kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def wait(self, timeout=None): """ Blocking wait for task status. """ if self._thread is None: return self._thread.join(timeout=timeout)	[ "def", "wait", "(", "self", ",", "timeout", "=", "None", ")", ":", "if", "self", ".", "_thread", "is", "None", ":", "return", "self", ".", "_thread", ".", "join", "(", "timeout", "=", "timeout", ")" ]	25.857143	0.010695
def StatusLine(self): """Generate the colored line indicating plugin status.""" pid = self.inferior.pid curthread = None threadnum = 0 if pid: if not self.inferior.is_running: logging.warning('Inferior is not running.') self.Detach() pid = None else: try: ...	[ "def", "StatusLine", "(", "self", ")", ":", "pid", "=", "self", ".", "inferior", ".", "pid", "curthread", "=", "None", "threadnum", "=", "0", "if", "pid", ":", "if", "not", "self", ".", "inferior", ".", "is_running", ":", "logging", ".", "warning", "...	35.925926	0.01004
def process_samples_table(samples_table, instruments_table, mef_transform_fxns=None, beads_table=None, base_dir=".", verbose=False, plot=False, ...	[ "def", "process_samples_table", "(", "samples_table", ",", "instruments_table", ",", "mef_transform_fxns", "=", "None", ",", "beads_table", "=", "None", ",", "base_dir", "=", "\".\"", ",", "verbose", "=", "False", ",", "plot", "=", "False", ",", "plot_dir", "=...	46.130435	0.001779
def process_options(pkg_version, sys_argv, option_list=None): """Handle debugger options. Set `option_list' if you are writing another main program and want to extend the existing set of debugger options. The options dicionary from opt_parser is return. sys_argv is also updated.""" usage_str=""...	[ "def", "process_options", "(", "pkg_version", ",", "sys_argv", ",", "option_list", "=", "None", ")", ":", "usage_str", "=", "\"\"\"%prog [debugger-options]]\n\n Client connection to an out-of-process trepan3k debugger session\"\"\"", "# serverChoices = ('TCP','FIFO', None) # we use ...	44.272727	0.00134
def t_IDENTIFIER(self, t): r'[a-zA-Z_][a-zA-Z0-9_]*' t.type = self.reserved_words.get(t.value, 'IDENTIFIER') return t	[ "def", "t_IDENTIFIER", "(", "self", ",", "t", ")", ":", "t", ".", "type", "=", "self", ".", "reserved_words", ".", "get", "(", "t", ".", "value", ",", "'IDENTIFIER'", ")", "return", "t" ]	34.5	0.014184
def _write_enums(self, entity_name, attributes): """ This method writes the ouput for a particular specification. """ self.enum_attrs_for_locale[entity_name] = attributes; for attribute in attributes: enum_name = "%s%sEnum" % (entity_name, attribute.name[0].upper() ...	[ "def", "_write_enums", "(", "self", ",", "entity_name", ",", "attributes", ")", ":", "self", ".", "enum_attrs_for_locale", "[", "entity_name", "]", "=", "attributes", "for", "attribute", "in", "attributes", ":", "enum_name", "=", "\"%s%sEnum\"", "%", "(", "ent...	48.25	0.022872
def _find_common_roots(paths): """Out of some paths it finds the common roots that need monitoring.""" paths = [x.split(os.path.sep) for x in paths] root = {} for chunks in sorted(paths, key=len, reverse=True): node = root for chunk in chunks: node = node.setdefault(chunk, {}...	[ "def", "_find_common_roots", "(", "paths", ")", ":", "paths", "=", "[", "x", ".", "split", "(", "os", ".", "path", ".", "sep", ")", "for", "x", "in", "paths", "]", "root", "=", "{", "}", "for", "chunks", "in", "sorted", "(", "paths", ",", "key", ...	27.35	0.001767
def wol(mac, bcast='255.255.255.255', destport=9): ''' Send a "Magic Packet" to wake up a Minion CLI Example: .. code-block:: bash salt-run network.wol 08-00-27-13-69-77 salt-run network.wol 080027136977 255.255.255.255 7 salt-run network.wol 08:00:27:13:69:77 255.255.255.255 ...	[ "def", "wol", "(", "mac", ",", "bcast", "=", "'255.255.255.255'", ",", "destport", "=", "9", ")", ":", "dest", "=", "salt", ".", "utils", ".", "network", ".", "mac_str_to_bytes", "(", "mac", ")", "sock", "=", "socket", ".", "socket", "(", "socket", "...	33.470588	0.001709
def full_data(tgt, fun, arg=None, tgt_type='glob', returner='', timeout=5): ''' Return the full data about the publication, this is invoked in the same way as the publish function CLI Example: .. code-block:: bash salt ...	[ "def", "full_data", "(", "tgt", ",", "fun", ",", "arg", "=", "None", ",", "tgt_type", "=", "'glob'", ",", "returner", "=", "''", ",", "timeout", "=", "5", ")", ":", "return", "_publish", "(", "tgt", ",", "fun", ",", "arg", "=", "arg", ",", "tgt_t...	26.085714	0.001056
def format(sql, encoding=None, *options): """Format sql* according to options. Available options are documented in :ref:`formatting`. In addition to the formatting options this function accepts the keyword "encoding" which determines the encoding of the statement. :returns: The formatted SQL ...	[ "def", "format", "(", "sql", ",", "encoding", "=", "None", ",", "", "", "options", ")", ":", "stack", "=", "engine", ".", "FilterStack", "(", ")", "options", "=", "formatter", ".", "validate_options", "(", "options", ")", "stack", "=", "formatter", "...	38.533333	0.001689
def fix_e265(source, aggressive=False): # pylint: disable=unused-argument """Format block comments.""" if '#' not in source: # Optimization. return source ignored_line_numbers = multiline_string_lines( source, include_docstrings=True) \| set(commented_out_code_lines(source))...	[ "def", "fix_e265", "(", "source", ",", "aggressive", "=", "False", ")", ":", "# pylint: disable=unused-argument", "if", "'#'", "not", "in", "source", ":", "# Optimization.", "return", "source", "ignored_line_numbers", "=", "multiline_string_lines", "(", "source", ",...	34.763158	0.000736
def imrescale(img, scale, return_scale=False, interpolation='bilinear'): """Resize image while keeping the aspect ratio. Args: img (ndarray): The input image. scale (float or tuple[int]): The scaling factor or maximum size. If it is a float number, then the image will be rescaled by...	[ "def", "imrescale", "(", "img", ",", "scale", ",", "return_scale", "=", "False", ",", "interpolation", "=", "'bilinear'", ")", ":", "h", ",", "w", "=", "img", ".", "shape", "[", ":", "2", "]", "if", "isinstance", "(", "scale", ",", "(", "float", ",...	38.864865	0.000678
def send_photo(self, photo: str, caption: str=None, reply: Message=None, on_success: callable=None, reply_markup: botapi.ReplyMarkup=None): """ Send photo to this peer. :param photo: File path to photo to send. :param caption: Caption for photo :param reply: Me...	[ "def", "send_photo", "(", "self", ",", "photo", ":", "str", ",", "caption", ":", "str", "=", "None", ",", "reply", ":", "Message", "=", "None", ",", "on_success", ":", "callable", "=", "None", ",", "reply_markup", ":", "botapi", ".", "ReplyMarkup", "="...	47.923077	0.020472
def decode_cookie(cookie, key=None): ''' This decodes a cookie given by `encode_cookie`. If verification of the cookie fails, ``None`` will be implicitly returned. :param cookie: An encoded cookie. :type cookie: str :param key: The key to use when creating the cookie digest. If not ...	[ "def", "decode_cookie", "(", "cookie", ",", "key", "=", "None", ")", ":", "try", ":", "payload", ",", "digest", "=", "cookie", ".", "rsplit", "(", "u'\|'", ",", "1", ")", "if", "hasattr", "(", "digest", ",", "'decode'", ")", ":", "digest", "=", "dig...	32.285714	0.001433
def digit(decimal, digit, input_base=10): """ Find the value of an integer at a specific digit when represented in a particular base. Args: decimal(int): A number represented in base 10 (positive integer). digit(int): The digit to find where zero is the first, lowest, digit. ...	[ "def", "digit", "(", "decimal", ",", "digit", ",", "input_base", "=", "10", ")", ":", "if", "decimal", "==", "0", ":", "return", "0", "if", "digit", "!=", "0", ":", "return", "(", "decimal", "//", "(", "input_base", "**", "digit", ")", ")", "%", ...	29.264706	0.000973
def capabilities(self, keyword=None): """CAPABILITIES command. Determines the capabilities of the server. Although RFC3977 states that this is a required command for servers to implement not all servers do, so expect that NNTPPermanentError may be raised when this command is is...	[ "def", "capabilities", "(", "self", ",", "keyword", "=", "None", ")", ":", "args", "=", "keyword", "code", ",", "message", "=", "self", ".", "command", "(", "\"CAPABILITIES\"", ",", "args", ")", "if", "code", "!=", "101", ":", "raise", "NNTPReplyError", ...	34.153846	0.002191
def request(self, path, method='GET', params=None, type=REST_TYPE): """Builds a request, gets a response and decodes it.""" response_text = self._get_http_client(type).request(path, method, params) if not response_text: return response_text response_json = json.loads(respon...	[ "def", "request", "(", "self", ",", "path", ",", "method", "=", "'GET'", ",", "params", "=", "None", ",", "type", "=", "REST_TYPE", ")", ":", "response_text", "=", "self", ".", "_get_http_client", "(", "type", ")", ".", "request", "(", "path", ",", "...	36.307692	0.008264
def create_canonical_classpath(cls, classpath_products, targets, basedir, save_classpath_file=False, internal_classpath_only=True, excludes=None): """Create a stable classpath of symlinks with standardized names. ...	[ "def", "create_canonical_classpath", "(", "cls", ",", "classpath_products", ",", "targets", ",", "basedir", ",", "save_classpath_file", "=", "False", ",", "internal_classpath_only", "=", "True", ",", "excludes", "=", "None", ")", ":", "def", "delete_old_target_outpu...	51.133333	0.012059
def get_all_knoreq_user_objects(self, include_machine = False): """ Fetches all user objects with useraccountcontrol DONT_REQ_PREAUTH flag set from the AD, and returns MSADUser object. """ logger.debug('Polling AD for all user objects, machine accounts included: %s'% include_machine) if include_machine == ...	[ "def", "get_all_knoreq_user_objects", "(", "self", ",", "include_machine", "=", "False", ")", ":", "logger", ".", "debug", "(", "'Polling AD for all user objects, machine accounts included: %s'", "%", "include_machine", ")", "if", "include_machine", "==", "True", ":", "...	44.5625	0.032967
def plotHistogram(freqCounts, title='On-Times Histogram', xLabel='On-Time'): """ This is usually used to display a histogram of the on-times encountered in a particular output. The freqCounts is a vector containg the frequency counts of each on-time (starting at an on-time of 0 and going to an on-time = len(...	[ "def", "plotHistogram", "(", "freqCounts", ",", "title", "=", "'On-Times Histogram'", ",", "xLabel", "=", "'On-Time'", ")", ":", "import", "pylab", "pylab", ".", "ion", "(", ")", "pylab", ".", "figure", "(", ")", "pylab", ".", "bar", "(", "numpy", ".", ...	29.64	0.010458
async def _process_lines(self, pattern: Optional[str] = None) -> None: """Read line from pipe they match with pattern.""" if pattern is not None: cmp = re.compile(pattern) _LOGGER.debug("Start working with pattern '%s'.", pattern) # read lines while self.is_running:...	[ "async", "def", "_process_lines", "(", "self", ",", "pattern", ":", "Optional", "[", "str", "]", "=", "None", ")", "->", "None", ":", "if", "pattern", "is", "not", "None", ":", "cmp", "=", "re", ".", "compile", "(", "pattern", ")", "_LOGGER", ".", ...	33.814815	0.00213
def query_insert(self, direction='max'): """ Query to get latest (default) or earliest update to repository """ if direction == 'min': return Layer.objects.aggregate( Min('last_updated'))['last_updated__min'].strftime('%Y-%m-%dT%H:%M:%SZ') return self....	[ "def", "query_insert", "(", "self", ",", "direction", "=", "'max'", ")", ":", "if", "direction", "==", "'min'", ":", "return", "Layer", ".", "objects", ".", "aggregate", "(", "Min", "(", "'last_updated'", ")", ")", "[", "'last_updated__min'", "]", ".", "...	48.777778	0.008949
def bytes_required(self): """ Returns ------- int Estimated number of bytes required by arrays registered on the cube, taking their extents into account. """ return np.sum([hcu.array_bytes(a) for a in self.arrays(reify=True).itervalues(...	[ "def", "bytes_required", "(", "self", ")", ":", "return", "np", ".", "sum", "(", "[", "hcu", ".", "array_bytes", "(", "a", ")", "for", "a", "in", "self", ".", "arrays", "(", "reify", "=", "True", ")", ".", "itervalues", "(", ")", "]", ")" ]	31.4	0.009288
def new_pos(self, html_div): """factory method pattern""" pos = self.Position(self, html_div) pos.bind_mov() self.positions.append(pos) return pos	[ "def", "new_pos", "(", "self", ",", "html_div", ")", ":", "pos", "=", "self", ".", "Position", "(", "self", ",", "html_div", ")", "pos", ".", "bind_mov", "(", ")", "self", ".", "positions", ".", "append", "(", "pos", ")", "return", "pos" ]	30.166667	0.010753
def decode(secret: Union[str, bytes], token: Union[str, bytes], alg: str = default_alg) -> Tuple[dict, dict]: """ Decodes the given token's header and payload and validates the signature. :param secret: The secret used to decode the token. Must match the secret used when creating the tok...	[ "def", "decode", "(", "secret", ":", "Union", "[", "str", ",", "bytes", "]", ",", "token", ":", "Union", "[", "str", ",", "bytes", "]", ",", "alg", ":", "str", "=", "default_alg", ")", "->", "Tuple", "[", "dict", ",", "dict", "]", ":", "secret", ...	42.142857	0.000552
def DualDBFlow(cls): """Decorator that creates AFF4 and RELDB flows from a given mixin.""" if issubclass(cls, flow.GRRFlow): raise ValueError("Mixin class shouldn't inherit from GRRFlow.") if cls.__name__[-5:] != "Mixin": raise ValueError("Flow mixin should have a name that ends in 'Mixin'.") flow_na...	[ "def", "DualDBFlow", "(", "cls", ")", ":", "if", "issubclass", "(", "cls", ",", "flow", ".", "GRRFlow", ")", ":", "raise", "ValueError", "(", "\"Mixin class shouldn't inherit from GRRFlow.\"", ")", "if", "cls", ".", "__name__", "[", "-", "5", ":", "]", "!=...	32.368421	0.018957
def url_concat( url: str, args: Union[ None, Dict[str, str], List[Tuple[str, str]], Tuple[Tuple[str, str], ...] ], ) -> str: """Concatenate url and arguments regardless of whether url has existing query parameters. ``args`` may be either a dictionary or a list of key-value pairs (th...	[ "def", "url_concat", "(", "url", ":", "str", ",", "args", ":", "Union", "[", "None", ",", "Dict", "[", "str", ",", "str", "]", ",", "List", "[", "Tuple", "[", "str", ",", "str", "]", "]", ",", "Tuple", "[", "Tuple", "[", "str", ",", "str", "]...	32.266667	0.001337
def dispatch_event(self, event, *args): """Dispatches an event. Returns a boolean indicating whether or not a handler suppressed further handling of the event (even the last). """ if event not in self.event_handlers: _log.error("Dispatch requested for unknown event '...	[ "def", "dispatch_event", "(", "self", ",", "event", ",", "*", "args", ")", ":", "if", "event", "not", "in", "self", ".", "event_handlers", ":", "_log", ".", "error", "(", "\"Dispatch requested for unknown event '%s'\"", ",", "event", ")", "return", "False", ...	38.296296	0.001887
def little_endian(self): """ Return the little_endian attribute of the BFD file being processed. """ if not self._ptr: raise BfdException("BFD not initialized") return _bfd.get_bfd_attribute(self._ptr, BfdAttributes.IS_LITTLE_ENDIAN)	[ "def", "little_endian", "(", "self", ")", ":", "if", "not", "self", ".", "_ptr", ":", "raise", "BfdException", "(", "\"BFD not initialized\"", ")", "return", "_bfd", ".", "get_bfd_attribute", "(", "self", ".", "_ptr", ",", "BfdAttributes", ".", "IS_LITTLE_ENDI...	34.875	0.01049
def get_labels(ids_find): """ Labels to make Cannon model spectra """ a = pyfits.open("%s/lamost_catalog_full.fits" %LAB_DIR) data = a[1].data a.close() id_all = data['lamost_id'] id_all = np.array(id_all) id_all = np.array([val.strip() for val in id_all]) snr_all = data['cannon_snrg'] ...	[ "def", "get_labels", "(", "ids_find", ")", ":", "a", "=", "pyfits", ".", "open", "(", "\"%s/lamost_catalog_full.fits\"", "%", "LAB_DIR", ")", "data", "=", "a", "[", "1", "]", ".", "data", "a", ".", "close", "(", ")", "id_all", "=", "data", "[", "'lam...	36.28	0.009667
def prob(self, pw): """ returns the probabiltiy of pw in the model. P[pw] = n(pw)/n(__total__) """ return float(self._T.get(pw, 0)) / self._T[TOTALF_W]	[ "def", "prob", "(", "self", ",", "pw", ")", ":", "return", "float", "(", "self", ".", "_T", ".", "get", "(", "pw", ",", "0", ")", ")", "/", "self", ".", "_T", "[", "TOTALF_W", "]" ]	31	0.010471
def find_project_file(start_dir, basename): '''Walk up the directory tree until we find a file of the given name.''' prefix = os.path.abspath(start_dir) while True: candidate = os.path.join(prefix, basename) if os.path.isfile(candidate): return candidate if os.path.exists...	[ "def", "find_project_file", "(", "start_dir", ",", "basename", ")", ":", "prefix", "=", "os", ".", "path", ".", "abspath", "(", "start_dir", ")", "while", "True", ":", "candidate", "=", "os", ".", "path", ".", "join", "(", "prefix", ",", "basename", ")...	45.466667	0.001437
def save(cls, network, phases=[], filename=''): r""" Saves data from the given objects into the specified file. Parameters ---------- network : OpenPNM Network Object The network containing the desired data phases : list of OpenPNM Phase Objects (optional, d...	[ "def", "save", "(", "cls", ",", "network", ",", "phases", "=", "[", "]", ",", "filename", "=", "''", ")", ":", "project", ",", "network", ",", "phases", "=", "cls", ".", "_parse_args", "(", "network", "=", "network", ",", "phases", "=", "phases", "...	38.834862	0.000461
def organization_memberships(self, organization): """ Retrieve tche organization fields for this organization. :param organization: Organization object or id """ return self._query_zendesk(self.endpoint.organization_memberships, 'organization_membership', id=organization)	[ "def", "organization_memberships", "(", "self", ",", "organization", ")", ":", "return", "self", ".", "_query_zendesk", "(", "self", ".", "endpoint", ".", "organization_memberships", ",", "'organization_membership'", ",", "id", "=", "organization", ")" ]	43.857143	0.009585
def to_native(self, value, context=None): """ Schematics deserializer override We return a phoenumbers.PhoneNumber object so any kind of formatting can be trivially performed. Additionally, some convenient properties have been added: e164: string formatted '+11234567890' ...	[ "def", "to_native", "(", "self", ",", "value", ",", "context", "=", "None", ")", ":", "if", "isinstance", "(", "value", ",", "pn", ".", "phonenumber", ".", "PhoneNumber", ")", ":", "return", "value", "try", ":", "phone", "=", "pn", ".", "parse", "(",...	34.354839	0.001826
def restore_bios_config(irmc_info, bios_config): """restore bios configuration This function sends a RESTORE BIOS request to the server. Then when the bios is ready for restoring, it will apply the provided settings and return. Note that this operation may take time. :param irmc_info: node inf...	[ "def", "restore_bios_config", "(", "irmc_info", ",", "bios_config", ")", ":", "def", "_process_bios_config", "(", ")", ":", "try", ":", "if", "isinstance", "(", "bios_config", ",", "dict", ")", ":", "input_data", "=", "bios_config", "else", ":", "input_data", ...	38.339286	0.000454
def index_whichnot(ol,value,which): ''' from elist.elist import * ol = [1,'a',3,'a',4,'a',5] index_whichnot(ol,'a',0) index_whichnot(ol,'a',1) index_whichnot(ol,'a',2) ''' length = ol.__len__() seq = -1 for i in range(0,length): if(value == ol[i]): ...	[ "def", "index_whichnot", "(", "ol", ",", "value", ",", "which", ")", ":", "length", "=", "ol", ".", "__len__", "(", ")", "seq", "=", "-", "1", "for", "i", "in", "range", "(", "0", ",", "length", ")", ":", "if", "(", "value", "==", "ol", "[", ...	23.3	0.008247
def update(self, task_id, progress): """ Defines the current progress for this progress bar id in iteration units (not percent). If the given id does not exist or the given progress is identical to the current, then does nothing. Logger uses a redraw rate be...	[ "def", "update", "(", "self", ",", "task_id", ",", "progress", ")", ":", "self", ".", "queue", ".", "put", "(", "dill", ".", "dumps", "(", "UpdateProgressCommand", "(", "task_id", "=", "task_id", ",", "progress", "=", "progress", ")", ")", ")" ]	70.2	0.010309
def isCountRate(self): """ isCountRate: Method or IRInputObject used to indicate if the science data is in units of counts or count rate. This method assumes that the keyword 'BUNIT' is in the header of the input FITS file. """ has_bunit = False if 'BUNIT...	[ "def", "isCountRate", "(", "self", ")", ":", "has_bunit", "=", "False", "if", "'BUNIT'", "in", "self", ".", "_image", "[", "'sci'", ",", "1", "]", ".", "header", ":", "has_bunit", "=", "True", "countrate", "=", "False", "if", "(", "self", ".", "_imag...	35.588235	0.012882
def get_performed_builds(self, id, **kwargs): """ Gets the set of builds performed during in a Product Milestone cycle This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please define a `callback` function to be invoked when re...	[ "def", "get_performed_builds", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'callback'", ")", ":", "return", "self", ".", "get_performed_builds_with_...	42.034483	0.002406
def dens(self,R,z,phi=0.,t=0.,forcepoisson=False): """ NAME: dens PURPOSE: evaluate the density rho(R,z,t) INPUT: R - Cylindrical Galactocentric radius (can be Quantity) z - vertical height (can be Quantity) phi - azimuth (opt...	[ "def", "dens", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ",", "forcepoisson", "=", "False", ")", ":", "try", ":", "if", "forcepoisson", ":", "raise", "AttributeError", "#Hack!", "return", "self", ".", "_amp", "*",...	27.380952	0.030227
def random_square_mask(shape, fraction): """Create a numpy array with specified shape and masked fraction. Args: shape: tuple, shape of the mask to create. fraction: float, fraction of the mask area to populate with `mask_scalar`. Returns: numpy.array: A numpy array storing the mask. """ mask =...	[ "def", "random_square_mask", "(", "shape", ",", "fraction", ")", ":", "mask", "=", "np", ".", "ones", "(", "shape", ")", "patch_area", "=", "shape", "[", "0", "]", "", "shape", "[", "1", "]", "", "fraction", "patch_dim", "=", "np", ".", "int", "(...	26.166667	0.015361
def refine(video, *kwargs): """Refine a video by searching `TheTVDB <http://thetvdb.com/>`_. .. note:: This refiner only work for instances of :class:`~subliminal.video.Episode`. Several attributes can be found: :attr:`~subliminal.video.Episode.series` * :attr:`~subliminal.video.E...	[ "def", "refine", "(", "video", ",", "", "", "kwargs", ")", ":", "# only deal with Episode videos", "if", "not", "isinstance", "(", "video", ",", "Episode", ")", ":", "logger", ".", "error", "(", "'Cannot refine episodes'", ")", "return", "# exit if the informa...	35.412281	0.001928
def docopt(doc, argv=None, help=True, version=None, options_first=False): """Parse `argv` based on command-line interface described in `doc`. `docopt` creates your command-line interface based on its description that you pass as `doc`. Such description can contain --options, <positional-argument>, comm...	[ "def", "docopt", "(", "doc", ",", "argv", "=", "None", ",", "help", "=", "True", ",", "version", "=", "None", ",", "options_first", "=", "False", ")", ":", "if", "argv", "is", "None", ":", "argv", "=", "sys", ".", "argv", "[", "1", ":", "]", "D...	34.875	0.000951
def p_createx(self,t): """expression : kw_create kw_table nexists NAME '(' tablespecs ')' opt_inheritx \| kw_create kw_table nexists NAME inheritx """ if len(t)==6: t[0] = CreateX(t[3], t[4], [], None, [], t[5]) else: all_constraints = {k:list(group) for k, group in itertool...	[ "def", "p_createx", "(", "self", ",", "t", ")", ":", "if", "len", "(", "t", ")", "==", "6", ":", "t", "[", "0", "]", "=", "CreateX", "(", "t", "[", "3", "]", ",", "t", "[", "4", "]", ",", "[", "]", ",", "None", ",", "[", "]", ",", "t"...	61.357143	0.021789
def tf_lanczos_smallest_eigval(vector_prod_fn, matrix_dim, initial_vector, num_iter=1000, max_iter=1000, collapse_tol=1e-9, dtype=tf.f...	[ "def", "tf_lanczos_smallest_eigval", "(", "vector_prod_fn", ",", "matrix_dim", ",", "initial_vector", ",", "num_iter", "=", "1000", ",", "max_iter", "=", "1000", ",", "collapse_tol", "=", "1e-9", ",", "dtype", "=", "tf", ".", "float32", ")", ":", "# alpha will...	35.305263	0.010441
def _add_finder(importer, finder): """Register a new pkg_resources path finder that does not replace the existing finder.""" existing_finder = _get_finder(importer) if not existing_finder: pkg_resources.register_finder(importer, finder) else: pkg_resources.register_finder(importer, ChainedFinder.of(ex...	[ "def", "_add_finder", "(", "importer", ",", "finder", ")", ":", "existing_finder", "=", "_get_finder", "(", "importer", ")", "if", "not", "existing_finder", ":", "pkg_resources", ".", "register_finder", "(", "importer", ",", "finder", ")", "else", ":", "pkg_re...	37.222222	0.020408
def register(cls, name: str, plugin: Type[ConnectionPlugin]) -> None: """Registers a connection plugin with a specified name Args: name: name of the connection plugin to register plugin: defined connection plugin class Raises: :obj:`nornir.core.exceptions.Co...	[ "def", "register", "(", "cls", ",", "name", ":", "str", ",", "plugin", ":", "Type", "[", "ConnectionPlugin", "]", ")", "->", "None", ":", "existing_plugin", "=", "cls", ".", "available", ".", "get", "(", "name", ")", "if", "existing_plugin", "is", "Non...	43.4	0.002255
def _set_pose_num(self, pose_num): """WARNING: Applies only to the MDAnalysis_Wrapper """ current_mobile_coord = self.mobile_origin_coord self.static_mobile_copy_uni.trajectory.ts._pos[self.static_num_atoms:,:] = self.zdock_trans_rot(self.grid_size, self.grid_spacing, self.init_t...	[ "def", "_set_pose_num", "(", "self", ",", "pose_num", ")", ":", "current_mobile_coord", "=", "self", ".", "mobile_origin_coord", "self", ".", "static_mobile_copy_uni", ".", "trajectory", ".", "ts", ".", "_pos", "[", "self", ".", "static_num_atoms", ":", ",", "...	64	0.013216
def set_up_resource_parameters(self): """Set up the resource parameter for the add/edit view. """ name_parameter = StringParameter('UUID-1') name_parameter.name = self.resource_parameters['Resource name'] name_parameter.help_text = tr( 'Name of the resource that will ...	[ "def", "set_up_resource_parameters", "(", "self", ")", ":", "name_parameter", "=", "StringParameter", "(", "'UUID-1'", ")", "name_parameter", ".", "name", "=", "self", ".", "resource_parameters", "[", "'Resource name'", "]", "name_parameter", ".", "help_text", "=", ...	48.488095	0.000241
def get_workflow_actions_for(brain_or_object): """Returns a list with the actions (transitions) supported by the workflows the object pass in is bound to. Note it returns all actions, not only those allowed for the object based on its current state and permissions. """ portal_type = api.get_portal_t...	[ "def", "get_workflow_actions_for", "(", "brain_or_object", ")", ":", "portal_type", "=", "api", ".", "get_portal_type", "(", "brain_or_object", ")", "actions", "=", "actions_by_type", ".", "get", "(", "portal_type", ",", "None", ")", "if", "actions", ":", "retur...	41.142857	0.002262
def img2img_transformer2d_tiny(): """Tiny params.""" hparams = img2img_transformer2d_base() hparams.num_decoder_layers = 2 hparams.hidden_size = 128 hparams.batch_size = 4 hparams.max_length = 128 hparams.attention_key_channels = hparams.attention_value_channels = 0 hparams.filter_size = 128 hparams.n...	[ "def", "img2img_transformer2d_tiny", "(", ")", ":", "hparams", "=", "img2img_transformer2d_base", "(", ")", "hparams", ".", "num_decoder_layers", "=", "2", "hparams", ".", "hidden_size", "=", "128", "hparams", ".", "batch_size", "=", "4", "hparams", ".", "max_le...	29.615385	0.032746
def build(self): """Builds the `HelicalHelix`.""" helical_helix = Polypeptide() primitive_coords = self.curve_primitive.coordinates helices = [Helix.from_start_and_end(start=primitive_coords[i], end=primitive_coords[i + 1], ...	[ "def", "build", "(", "self", ")", ":", "helical_helix", "=", "Polypeptide", "(", ")", "primitive_coords", "=", "self", ".", "curve_primitive", ".", "coordinates", "helices", "=", "[", "Helix", ".", "from_start_and_end", "(", "start", "=", "primitive_coords", "...	49.55	0.001979
def get_mounts_by_path(): ''' Gets all mounted devices and paths :return: dict of mounted devices and related information by path ''' mount_info = [] f = open('/proc/mounts', 'r') for line in f: _tmp = line.split(" ") mount_info.append({'path': _tmp[1], ...	[ "def", "get_mounts_by_path", "(", ")", ":", "mount_info", "=", "[", "]", "f", "=", "open", "(", "'/proc/mounts'", ",", "'r'", ")", "for", "line", "in", "f", ":", "_tmp", "=", "line", ".", "split", "(", "\" \"", ")", "mount_info", ".", "append", "(", ...	31.0625	0.001953
def p_lpartselect_minus(self, p): 'lpartselect : identifier LBRACKET expression MINUSCOLON expression RBRACKET' p[0] = Partselect(p[1], p[3], Minus(p[3], p[5]), lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))	[ "def", "p_lpartselect_minus", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "Partselect", "(", "p", "[", "1", "]", ",", "p", "[", "3", "]", ",", "Minus", "(", "p", "[", "3", "]", ",", "p", "[", "5", "]", ")", ",", "lineno", "=...	57.5	0.012876
def request_and_get_output(self, table, outtype, outfn): """ Shorthand for requesting an output file and then downloading it when ready. ## Arguments * `table` (str): The name of the table to export. * `outtype` (str): The type of output. Must be one of: CSV...	[ "def", "request_and_get_output", "(", "self", ",", "table", ",", "outtype", ",", "outfn", ")", ":", "job_id", "=", "self", ".", "request_output", "(", "table", ",", "outtype", ")", "status", "=", "self", ".", "monitor", "(", "job_id", ")", "if", "status"...	38.272727	0.002317
def set_level(self, level, console_only=False): """ Defines the logging level (from standard logging module) for log messages. :param level: Level of logging for the file logger. :param console_only: [Optional] If True then the file logger...	[ "def", "set_level", "(", "self", ",", "level", ",", "console_only", "=", "False", ")", ":", "self", ".", "queue", ".", "put", "(", "dill", ".", "dumps", "(", "SetLevelCommand", "(", "level", "=", "level", ",", "console_only", "=", "console_only", ")", ...	48.7	0.012097
def style_from_dict(style_dict, include_defaults=True): """ Create a ``Style`` instance from a dictionary or other mapping. The dictionary is equivalent to the ``Style.styles`` dictionary from pygments, with a few additions: it supports 'reverse' and 'blink'. Usage:: style_from_dict({ ...	[ "def", "style_from_dict", "(", "style_dict", ",", "include_defaults", "=", "True", ")", ":", "assert", "isinstance", "(", "style_dict", ",", "Mapping", ")", "if", "include_defaults", ":", "s2", "=", "{", "}", "s2", ".", "update", "(", "DEFAULT_STYLE_EXTENSIONS...	32.724138	0.000341
def is_in(self, point_x, point_y): """ Test if the point is within this ellipse """ x = self.x_origin y = self.y_origin a = self.e_width#/2 # FIXME: Why divide by two b = self.e_height#/2 return ((point_x-x)2/(a2)) + ((point_y-y)2/(b2)) < 1.0	[ "def", "is_in", "(", "self", ",", "point_x", ",", "point_y", ")", ":", "x", "=", "self", ".", "x_origin", "y", "=", "self", ".", "y_origin", "a", "=", "self", ".", "e_width", "#/2 # FIXME: Why divide by two", "b", "=", "self", ".", "e_height", "#/2", "...	32.444444	0.02
def diag_stressor(self, stressor, name=None): """ Diagonalize one row of the stressor matrix for a flow analysis. This method takes one row of the F matrix and diagonalize to the full region/sector format. Footprints calculation based on this matrix show the flow of embodied stressors f...	[ "def", "diag_stressor", "(", "self", ",", "stressor", ",", "name", "=", "None", ")", ":", "if", "type", "(", "stressor", ")", "is", "int", ":", "stressor", "=", "self", ".", "F", ".", "index", "[", "stressor", "]", "if", "len", "(", "stressor", ")"...	32.982143	0.001052
def steps_for_spec(builder, spec, processed_modules=None): ''' Sets `builder` configuration, and returns all the builder steps necessary to build `spec` and its dependencies. Traverses the dependencies in depth-first order, honoring the sequencing in each 'depends_on' list. ''' if processed...	[ "def", "steps_for_spec", "(", "builder", ",", "spec", ",", "processed_modules", "=", "None", ")", ":", "if", "processed_modules", "is", "None", ":", "processed_modules", "=", "set", "(", ")", "steps", "=", "[", "]", "for", "module", "in", "spec", ".", "g...	34.428571	0.001346
def to_file(self, destination, format='csv', csv_delimiter=',', csv_header=True): """Save the results to a local file in CSV format. Args: destination: path on the local filesystem for the saved results. format: the format to use for the exported data; currently only 'csv' is supported. csv_d...	[ "def", "to_file", "(", "self", ",", "destination", ",", "format", "=", "'csv'", ",", "csv_delimiter", "=", "','", ",", "csv_header", "=", "True", ")", ":", "f", "=", "codecs", ".", "open", "(", "destination", ",", "'w'", ",", "'utf-8'", ")", "fieldname...	40.869565	0.009356
def emit_pdf(outputs, options): '''Runs the PDF conversion command to generate the PDF.''' cmd = options.pdf_cmd cmd = cmd.replace('%o', options.pdfname) if len(outputs) > 2: cmd_print = cmd.replace('%i', ' '.join(outputs[:2] + ['...'])) else: cmd_print = cmd.replace('%i', ' '.join...	[ "def", "emit_pdf", "(", "outputs", ",", "options", ")", ":", "cmd", "=", "options", ".", "pdf_cmd", "cmd", "=", "cmd", ".", "replace", "(", "'%o'", ",", "options", ".", "pdfname", ")", "if", "len", "(", "outputs", ")", ">", "2", ":", "cmd_print", "...	28.36	0.001364
def files(self, pattern=None, sort_key=lambda k: k, sort_reverse=False, abspath=False): """ Return a sorted list containing relative path of all files (recursively). :type pattern: str :param pattern: Unix style (glob like/gitignore like) pattern :param sort_key: key argument for sorte...	[ "def", "files", "(", "self", ",", "pattern", "=", "None", ",", "sort_key", "=", "lambda", "k", ":", "k", ",", "sort_reverse", "=", "False", ",", "abspath", "=", "False", ")", ":", "return", "sorted", "(", "self", ".", "iterfiles", "(", "pattern", ","...	36.733333	0.00885
def license_from_trove(trove): """Finds out license from list of trove classifiers. Args: trove: list of trove classifiers Returns: Fedora name of the package license or empty string, if no licensing information is found in trove classifiers. """ license = [] for classifi...	[ "def", "license_from_trove", "(", "trove", ")", ":", "license", "=", "[", "]", "for", "classifier", "in", "trove", ":", "if", "'License'", "in", "classifier", ":", "stripped", "=", "classifier", ".", "strip", "(", ")", "# if taken from EGG-INFO, begins with Clas...	39.176471	0.001466
def patch(self, measurementId): """ Patches the metadata associated with the new measurement, if this impacts the measurement length then a new measurement is created otherwise it just updates it in place. :param measurementId: :return: """ data = request.get_j...	[ "def", "patch", "(", "self", ",", "measurementId", ")", ":", "data", "=", "request", ".", "get_json", "(", ")", "if", "data", "is", "not", "None", ":", "logger", ".", "debug", "(", "'Received payload for '", "+", "measurementId", "+", "' - '", "+", "str"...	43.333333	0.010038
def _randomize_single_subject(data, seed=None): """Randomly permute the voxels of the subject. The subject is organized as Voxel x TR, this method shuffles the voxel dimension in place. Parameters ---------- data: 2D array in shape [nVoxels, nTRs] Activity image data to be shuffled. ...	[ "def", "_randomize_single_subject", "(", "data", ",", "seed", "=", "None", ")", ":", "if", "seed", "is", "not", "None", ":", "np", ".", "random", ".", "seed", "(", "seed", ")", "np", ".", "random", ".", "shuffle", "(", "data", ")" ]	25.5	0.00189
def create_analysis(context, source, **kwargs): """Create a new Analysis. The source can be an Analysis Service or an existing Analysis, and all possible field values will be set to the values found in the source object. :param context: The analysis will be created inside this object. :param source...	[ "def", "create_analysis", "(", "context", ",", "source", ",", "", "", "kwargs", ")", ":", "an_id", "=", "kwargs", ".", "get", "(", "'id'", ",", "source", ".", "getKeyword", "(", ")", ")", "analysis", "=", "_createObjectByType", "(", "\"Analysis\"", ","...	46.033333	0.000709
def get_name_init(self, name): """Get initial name of symbol. """ self._register_name(name) return self._var_name_mappers[name].get_init()	[ "def", "get_name_init", "(", "self", ",", "name", ")", ":", "self", ".", "_register_name", "(", "name", ")", "return", "self", ".", "_var_name_mappers", "[", "name", "]", ".", "get_init", "(", ")" ]	27.666667	0.011696
def organization_subscription_delete(self, id, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/organization_subscriptions#delete-organization-subscription" api_path = "/api/v2/organization_subscriptions/{id}.json" api_path = api_path.format(id=id) return self.call(api_path, ...	[ "def", "organization_subscription_delete", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/organization_subscriptions/{id}.json\"", "api_path", "=", "api_path", ".", "format", "(", "id", "=", "id", ")", "return", "self", "....	68.4	0.008671
def stream(self, date_created_from=values.unset, date_created_to=values.unset, limit=None, page_size=None): """ Streams ExecutionInstance records from the API as a generator stream. This operation lazily loads records as efficiently as possible until the limit is reached. ...	[ "def", "stream", "(", "self", ",", "date_created_from", "=", "values", ".", "unset", ",", "date_created_to", "=", "values", ".", "unset", ",", "limit", "=", "None", ",", "page_size", "=", "None", ")", ":", "limits", "=", "self", ".", "_version", ".", "...	55.655172	0.008526
def run(self): """ Run the deduplication process. We apply the removal strategy one duplicate set at a time to keep memory footprint low and make the log of actions easier to read. """ logger.info( "The {} strategy will be applied on each duplicate set.".format( ...	[ "def", "run", "(", "self", ")", ":", "logger", ".", "info", "(", "\"The {} strategy will be applied on each duplicate set.\"", ".", "format", "(", "self", ".", "conf", ".", "strategy", ")", ")", "self", ".", "stats", "[", "'set_total'", "]", "=", "len", "(",...	34.347826	0.002463
def change_password(_, user_id=None, password=None): """ Change user password """ click.echo(green('\nChange password:')) click.echo(green('-' 40)) with get_app().app_context(): user = find_user(dict(id=user_id)) if not user: click.echo(red('User not found\n')) ...	[ "def", "change_password", "(", "", "_", ",", "user_id", "=", "None", ",", "password", "=", "None", ")", ":", "click", ".", "echo", "(", "green", "(", "'\\nChange password:'", ")", ")", "click", ".", "echo", "(", "green", "(", "'-'", "", "40", ")", ...	31.105263	0.001642
def location_check(lat, lon): """For use by Core client wrappers""" if not (isinstance(lat, number_types) and -90 <= lat <= 90): raise ValueError("Latitude: '{latitude}' invalid".format(latitude=lat)) if not (isinstance(lon, number_types) and -180 <= lon <= 180): raise V...	[ "def", "location_check", "(", "lat", ",", "lon", ")", ":", "if", "not", "(", "isinstance", "(", "lat", ",", "number_types", ")", "and", "-", "90", "<=", "lat", "<=", "90", ")", ":", "raise", "ValueError", "(", "\"Latitude: '{latitude}' invalid\"", ".", "...	54.428571	0.010336
def delete_lbaas_member(self, lbaas_member, lbaas_pool): """Deletes the specified lbaas_member.""" return self.delete(self.lbaas_member_path % (lbaas_pool, lbaas_member))	[ "def", "delete_lbaas_member", "(", "self", ",", "lbaas_member", ",", "lbaas_pool", ")", ":", "return", "self", ".", "delete", "(", "self", ".", "lbaas_member_path", "%", "(", "lbaas_pool", ",", "lbaas_member", ")", ")" ]	61.333333	0.010753
def pruneChanges(self, changeHorizon): """ Called periodically by DBConnector, this method deletes changes older than C{changeHorizon}. """ if not changeHorizon: return None def thd(conn): changes_tbl = self.db.model.changes # First,...	[ "def", "pruneChanges", "(", "self", ",", "changeHorizon", ")", ":", "if", "not", "changeHorizon", ":", "return", "None", "def", "thd", "(", "conn", ")", ":", "changes_tbl", "=", "self", ".", "db", ".", "model", ".", "changes", "# First, get the list of chang...	43.333333	0.001368
def rasterize_pdf( input_file, output_file, xres, yres, raster_device, log, pageno=1, page_dpi=None, rotation=None, filter_vector=False, ): """Rasterize one page of a PDF at resolution (xres, yres) in canvas units. The image is sized to match the integer pixels dimension...	[ "def", "rasterize_pdf", "(", "input_file", ",", "output_file", ",", "xres", ",", "yres", ",", "raster_device", ",", "log", ",", "pageno", "=", "1", ",", "page_dpi", "=", "None", ",", "rotation", "=", "None", ",", "filter_vector", "=", "False", ",", ")", ...	34.292929	0.000573
def exportFile(self, jobStoreFileID, dstUrl): """ Exports file to destination pointed at by the destination URL. Refer to :meth:`.AbstractJobStore.importFile` documentation for currently supported URL schemes. Note that the helper method _exportFile is used to read from the source and ...	[ "def", "exportFile", "(", "self", ",", "jobStoreFileID", ",", "dstUrl", ")", ":", "dstUrl", "=", "urlparse", ".", "urlparse", "(", "dstUrl", ")", "otherCls", "=", "self", ".", "_findJobStoreForUrl", "(", "dstUrl", ",", "export", "=", "True", ")", "self", ...	54.529412	0.008484
def max_entropy_distribution(node_indices, number_of_nodes): """Return the maximum entropy distribution over a set of nodes. This is different from the network's uniform distribution because nodes outside ``node_indices`` are fixed and treated as if they have only 1 state. Args: node_indic...	[ "def", "max_entropy_distribution", "(", "node_indices", ",", "number_of_nodes", ")", ":", "distribution", "=", "np", ".", "ones", "(", "repertoire_shape", "(", "node_indices", ",", "number_of_nodes", ")", ")", "return", "distribution", "/", "distribution", ".", "s...	38	0.001427
def all(self, query=None, **kwargs): """ Gets all organizations. """ return super(OrganizationsProxy, self).all(query=query)	[ "def", "all", "(", "self", ",", "query", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "super", "(", "OrganizationsProxy", ",", "self", ")", ".", "all", "(", "query", "=", "query", ")" ]	25.333333	0.012739
def logpdf_sum(self, f, y, Y_metadata=None): """ Convenience function that can overridden for functions where this could be computed more efficiently """ return np.sum(self.logpdf(f, y, Y_metadata=Y_metadata))	[ "def", "logpdf_sum", "(", "self", ",", "f", ",", "y", ",", "Y_metadata", "=", "None", ")", ":", "return", "np", ".", "sum", "(", "self", ".", "logpdf", "(", "f", ",", "y", ",", "Y_metadata", "=", "Y_metadata", ")", ")" ]	40.666667	0.008032
def path_or_git_url(self, repo, owner='kivy', branch='master', url_format='https://github.com/{owner}/{repo}.git', platform=None, squash_hyphen=True): """Get source location for a git checkout This method will check the `buildozer....	[ "def", "path_or_git_url", "(", "self", ",", "repo", ",", "owner", "=", "'kivy'", ",", "branch", "=", "'master'", ",", "url_format", "=", "'https://github.com/{owner}/{repo}.git'", ",", "platform", "=", "None", ",", "squash_hyphen", "=", "True", ")", ":", "if",...	40.0375	0.001828
def get_element(text_or_tree_or_element): """ Get back an ET.Element for several possible input formats """ if isinstance(text_or_tree_or_element, ET.Element): return text_or_tree_or_element elif isinstance(text_or_tree_or_element, ET.ElementTree): return text_or_tree_or_element.getr...	[ "def", "get_element", "(", "text_or_tree_or_element", ")", ":", "if", "isinstance", "(", "text_or_tree_or_element", ",", "ET", ".", "Element", ")", ":", "return", "text_or_tree_or_element", "elif", "isinstance", "(", "text_or_tree_or_element", ",", "ET", ".", "Eleme...	41.75	0.001953
def execute_command(parser, config, ext_classes): """ Banana banana """ res = 0 cmd = config.get('command') get_private_folder = config.get('get_private_folder', False) if cmd == 'help': parser.print_help() elif cmd == 'run' or get_private_folder: # git.mk backward compat ...	[ "def", "execute_command", "(", "parser", ",", "config", ",", "ext_classes", ")", ":", "res", "=", "0", "cmd", "=", "config", ".", "get", "(", "'command'", ")", "get_private_folder", "=", "config", ".", "get", "(", "'get_private_folder'", ",", "False", ")",...	32.55	0.000497
def cluster(args): """ Creating clusters """ args = _check_args(args) read_stats_file = op.join(args.dir_out, "read_stats.tsv") if file_exists(read_stats_file): os.remove(read_stats_file) bam_file, seq_obj = _clean_alignment(args) logger.info("Parsing matrix file") seqL, y...	[ "def", "cluster", "(", "args", ")", ":", "args", "=", "_check_args", "(", "args", ")", "read_stats_file", "=", "op", ".", "join", "(", "args", ".", "dir_out", ",", "\"read_stats.tsv\"", ")", "if", "file_exists", "(", "read_stats_file", ")", ":", "os", "....	37.661972	0.002187
def ptz_status_send(self, zoom, pan, tilt, force_mavlink1=False): ''' Transmits the actual Pan, Tilt and Zoom values of the camera unit zoom : The actual Zoom Value (uint8_t) pan : The Pan value in 10ths of degre...	[ "def", "ptz_status_send", "(", "self", ",", "zoom", ",", "pan", ",", "tilt", ",", "force_mavlink1", "=", "False", ")", ":", "return", "self", ".", "send", "(", "self", ".", "ptz_status_encode", "(", "zoom", ",", "pan", ",", "tilt", ")", ",", "force_mav...	53.6	0.011009
def mchirp_sampler_lnm(kwargs): ''' Draw chirp mass samples for uniform-in-log model Parameters ---------- kwargs: string Keyword arguments as model parameters and number of samples Returns ------- mchirp-astro: array The chirp mass samples...	[ "def", "mchirp_sampler_lnm", "(", "", "", "kwargs", ")", ":", "m1", ",", "m2", "=", "draw_lnm_samples", "(", "", "", "kwargs", ")", "mchirp_astro", "=", "mchirp_from_mass1_mass2", "(", "m1", ",", "m2", ")", "return", "mchirp_astro" ]	26.294118	0.00216
def add_masquerade(zone=None, permanent=True): ''' Enable masquerade on a zone. If zone is omitted, default zone will be used. .. versionadded:: 2015.8.0 CLI Example: .. code-block:: bash salt '*' firewalld.add_masquerade To enable masquerade on a specific zone .. code-bloc...	[ "def", "add_masquerade", "(", "zone", "=", "None", ",", "permanent", "=", "True", ")", ":", "if", "zone", ":", "cmd", "=", "'--zone={0} --add-masquerade'", ".", "format", "(", "zone", ")", "else", ":", "cmd", "=", "'--add-masquerade'", "if", "permanent", "...	19.642857	0.001733
def _represent_ordereddict(dump, tag, mapping, flow_style=None): """PyYAML representer function for OrderedDict. This is needed for yaml.safe_dump() to support OrderedDict. Courtesy: https://blog.elsdoerfer.name/2012/07/26/make-pyyaml-output-an-ordereddict/ """ value = [] node = yaml.Mappin...	[ "def", "_represent_ordereddict", "(", "dump", ",", "tag", ",", "mapping", ",", "flow_style", "=", "None", ")", ":", "value", "=", "[", "]", "node", "=", "yaml", ".", "MappingNode", "(", "tag", ",", "value", ",", "flow_style", "=", "flow_style", ")", "i...	41	0.000794
def serialize(self, method="urlencoded", lev=0, **kwargs): """ Convert this instance to another representation. Which representation is given by the choice of serialization method. :param method: A serialization method. Presently 'urlencoded', 'json', 'jwt' and 'dic...	[ "def", "serialize", "(", "self", ",", "method", "=", "\"urlencoded\"", ",", "lev", "=", "0", ",", "", "", "kwargs", ")", ":", "return", "getattr", "(", "self", ",", "\"to_%s\"", "%", "method", ")", "(", "lev", "=", "lev", ",", "", "", "kwargs",...	45.833333	0.008913
def get_shutit_pexpect_sessions(self, note=None): """Returns all the shutit_pexpect_session keys for this object. @return: list of all shutit_pexpect_session keys (pexpect_session_ids) """ self.handle_note(note) sessions = [] for key in self.shutit_pexpect_sessions: sessions.append(shutit_object.shutit_...	[ "def", "get_shutit_pexpect_sessions", "(", "self", ",", "note", "=", "None", ")", ":", "self", ".", "handle_note", "(", "note", ")", "sessions", "=", "[", "]", "for", "key", "in", "self", ".", "shutit_pexpect_sessions", ":", "sessions", ".", "append", "(",...	34.636364	0.028133
def handle_rereduce(self, reduce_function_names, values): """Re-reduce a set of values, with a list of rereduction functions.""" # This gets a large list of reduction functions, given their names. reduce_functions = [] for reduce_function_name in reduce_function_names: try: ...	[ "def", "handle_rereduce", "(", "self", ",", "reduce_function_names", ",", "values", ")", ":", "# This gets a large list of reduction functions, given their names.", "reduce_functions", "=", "[", "]", "for", "reduce_function_name", "in", "reduce_function_names", ":", "try", ...	48.272727	0.001847
def _dist_wrapper(): """Add temporary distribution build files (and then clean up).""" try: # Copy select .rst files to .txt for build. for rst_file, txt_file in zip(SDIST_RST_FILES, SDIST_TXT_FILES): local("cp %s %s" % (rst_file, txt_file)) # Perform action. yield...	[ "def", "_dist_wrapper", "(", ")", ":", "try", ":", "# Copy select .rst files to .txt for build.", "for", "rst_file", ",", "txt_file", "in", "zip", "(", "SDIST_RST_FILES", ",", "SDIST_TXT_FILES", ")", ":", "local", "(", "\"cp %s %s\"", "%", "(", "rst_file", ",", ...	35	0.002141
def connect(dbapi_connection, connection_record): """ Called once by SQLAlchemy for each new SQLite DB-API connection. Here is where we issue some PRAGMA statements to configure how we're going to access the SQLite database. @param dbapi_connection: A newly connecte...	[ "def", "connect", "(", "dbapi_connection", ",", "connection_record", ")", ":", "try", ":", "cursor", "=", "dbapi_connection", ".", "cursor", "(", ")", "try", ":", "cursor", ".", "execute", "(", "\"PRAGMA foreign_keys = ON;\"", ")", "cursor", ".", "execute", "(...	33.36	0.002331
def create(cls, name, certificate): """ Create a new external VPN CA for signing internal gateway certificates. :param str name: Name of VPN CA :param str certificate: file name, path or certificate string. :raises CreateElementFailed: Failed creating cert with r...	[ "def", "create", "(", "cls", ",", "name", ",", "certificate", ")", ":", "json", "=", "{", "'name'", ":", "name", ",", "'certificate'", ":", "certificate", "}", "return", "ElementCreator", "(", "cls", ",", "json", ")" ]	34.357143	0.008097
def write_force_constants_to_hdf5(force_constants, filename='force_constants.hdf5', p2s_map=None, physical_unit=None, compression=None): """Write force constants in hdf5 format. ...	[ "def", "write_force_constants_to_hdf5", "(", "force_constants", ",", "filename", "=", "'force_constants.hdf5'", ",", "p2s_map", "=", "None", ",", "physical_unit", "=", "None", ",", "compression", "=", "None", ")", ":", "try", ":", "import", "h5py", "except", "Im...	35.642857	0.00065
def filter_paths(pathnames, included_patterns=None, excluded_patterns=None, case_sensitive=True): """ Filters from a set of paths based on acceptable patterns and ignorable patterns. :param pathnames: A list of path names that will be filtered ...	[ "def", "filter_paths", "(", "pathnames", ",", "included_patterns", "=", "None", ",", "excluded_patterns", "=", "None", ",", "case_sensitive", "=", "True", ")", ":", "included", "=", "[", "\"*\"", "]", "if", "included_patterns", "is", "None", "else", "included_...	44.47619	0.001572
def timeout_exponential_backoff( retries: int, timeout: int, maximum: int, ) -> Iterator[int]: """ Timeouts generator with an exponential backoff strategy. Timeouts start spaced by `timeout`, after `retries` exponentially increase the retry delays until `maximum`, then maximum is re...	[ "def", "timeout_exponential_backoff", "(", "retries", ":", "int", ",", "timeout", ":", "int", ",", "maximum", ":", "int", ",", ")", "->", "Iterator", "[", "int", "]", ":", "yield", "timeout", "tries", "=", "1", "while", "tries", "<", "retries", ":", "t...	24.434783	0.001712
def is_merged(self): """ :calls: `GET /repos/:owner/:repo/pulls/:number/merge <http://developer.github.com/v3/pulls>`_ :rtype: bool """ status, headers, data = self._requester.requestJson( "GET", self.url + "/merge" ) return status == 204	[ "def", "is_merged", "(", "self", ")", ":", "status", ",", "headers", ",", "data", "=", "self", ".", "_requester", ".", "requestJson", "(", "\"GET\"", ",", "self", ".", "url", "+", "\"/merge\"", ")", "return", "status", "==", "204" ]	30.9	0.009434
def _transform_gradients(self, g): """ Transform the gradients by multiplying the gradient factor for each constraint to it. """ #py3 fix #[np.put(g, i, c.gradfactor(self.param_array[i], g[i])) for c, i in self.constraints.iteritems() if c != __fixed__] [np.put(g,...	[ "def", "_transform_gradients", "(", "self", ",", "g", ")", ":", "#py3 fix", "#[np.put(g, i, c.gradfactor(self.param_array[i], g[i])) for c, i in self.constraints.iteritems() if c != __fixed__]", "[", "np", ".", "put", "(", "g", ",", "i", ",", "c", ".", "gradfactor", "(", ...	48.1	0.014286

def wait(self, timeout=None): """ Blocking wait for task status. """ if self._thread is None: return self._thread.join(timeout=timeout)

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def StatusLine(self): """Generate the colored line indicating plugin status.""" pid = self.inferior.pid curthread = None threadnum = 0 if pid: if not self.inferior.is_running: logging.warning('Inferior is not running.') self.Detach() pid = None else: try: ...

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def process_samples_table(samples_table, instruments_table, mef_transform_fxns=None, beads_table=None, base_dir=".", verbose=False, plot=False, ...

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def process_options(pkg_version, sys_argv, option_list=None): """Handle debugger options. Set `option_list' if you are writing another main program and want to extend the existing set of debugger options. The options dicionary from opt_parser is return. sys_argv is also updated.""" usage_str=""...

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def t_IDENTIFIER(self, t): r'[a-zA-Z_][a-zA-Z0-9_]*' t.type = self.reserved_words.get(t.value, 'IDENTIFIER') return t

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def _write_enums(self, entity_name, attributes): """ This method writes the ouput for a particular specification. """ self.enum_attrs_for_locale[entity_name] = attributes; for attribute in attributes: enum_name = "%s%sEnum" % (entity_name, attribute.name[0].upper() ...

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def _find_common_roots(paths): """Out of some paths it finds the common roots that need monitoring.""" paths = [x.split(os.path.sep) for x in paths] root = {} for chunks in sorted(paths, key=len, reverse=True): node = root for chunk in chunks: node = node.setdefault(chunk, {}...

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def wol(mac, bcast='255.255.255.255', destport=9): ''' Send a "Magic Packet" to wake up a Minion CLI Example: .. code-block:: bash salt-run network.wol 08-00-27-13-69-77 salt-run network.wol 080027136977 255.255.255.255 7 salt-run network.wol 08:00:27:13:69:77 255.255.255.255 ...

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def full_data(tgt, fun, arg=None, tgt_type='glob', returner='', timeout=5): ''' Return the full data about the publication, this is invoked in the same way as the publish function CLI Example: .. code-block:: bash salt ...

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def format(sql, encoding=None, **options): """Format *sql* according to *options*. Available options are documented in :ref:`formatting`. In addition to the formatting options this function accepts the keyword "encoding" which determines the encoding of the statement. :returns: The formatted SQL ...

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def fix_e265(source, aggressive=False): # pylint: disable=unused-argument """Format block comments.""" if '#' not in source: # Optimization. return source ignored_line_numbers = multiline_string_lines( source, include_docstrings=True) | set(commented_out_code_lines(source))...

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def imrescale(img, scale, return_scale=False, interpolation='bilinear'): """Resize image while keeping the aspect ratio. Args: img (ndarray): The input image. scale (float or tuple[int]): The scaling factor or maximum size. If it is a float number, then the image will be rescaled by...

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def send_photo(self, photo: str, caption: str=None, reply: Message=None, on_success: callable=None, reply_markup: botapi.ReplyMarkup=None): """ Send photo to this peer. :param photo: File path to photo to send. :param caption: Caption for photo :param reply: Me...

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def decode_cookie(cookie, key=None): ''' This decodes a cookie given by `encode_cookie`. If verification of the cookie fails, ``None`` will be implicitly returned. :param cookie: An encoded cookie. :type cookie: str :param key: The key to use when creating the cookie digest. If not ...

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def digit(decimal, digit, input_base=10): """ Find the value of an integer at a specific digit when represented in a particular base. Args: decimal(int): A number represented in base 10 (positive integer). digit(int): The digit to find where zero is the first, lowest, digit. ...

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def capabilities(self, keyword=None): """CAPABILITIES command. Determines the capabilities of the server. Although RFC3977 states that this is a required command for servers to implement not all servers do, so expect that NNTPPermanentError may be raised when this command is is...

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def request(self, path, method='GET', params=None, type=REST_TYPE): """Builds a request, gets a response and decodes it.""" response_text = self._get_http_client(type).request(path, method, params) if not response_text: return response_text response_json = json.loads(respon...

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def create_canonical_classpath(cls, classpath_products, targets, basedir, save_classpath_file=False, internal_classpath_only=True, excludes=None): """Create a stable classpath of symlinks with standardized names. ...

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def get_all_knoreq_user_objects(self, include_machine = False): """ Fetches all user objects with useraccountcontrol DONT_REQ_PREAUTH flag set from the AD, and returns MSADUser object. """ logger.debug('Polling AD for all user objects, machine accounts included: %s'% include_machine) if include_machine == ...

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def plotHistogram(freqCounts, title='On-Times Histogram', xLabel='On-Time'): """ This is usually used to display a histogram of the on-times encountered in a particular output. The freqCounts is a vector containg the frequency counts of each on-time (starting at an on-time of 0 and going to an on-time = len(...

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async def _process_lines(self, pattern: Optional[str] = None) -> None: """Read line from pipe they match with pattern.""" if pattern is not None: cmp = re.compile(pattern) _LOGGER.debug("Start working with pattern '%s'.", pattern) # read lines while self.is_running:...

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def query_insert(self, direction='max'): """ Query to get latest (default) or earliest update to repository """ if direction == 'min': return Layer.objects.aggregate( Min('last_updated'))['last_updated__min'].strftime('%Y-%m-%dT%H:%M:%SZ') return self....

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def bytes_required(self): """ Returns ------- int Estimated number of bytes required by arrays registered on the cube, taking their extents into account. """ return np.sum([hcu.array_bytes(a) for a in self.arrays(reify=True).itervalues(...

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def new_pos(self, html_div): """factory method pattern""" pos = self.Position(self, html_div) pos.bind_mov() self.positions.append(pos) return pos

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def decode(secret: Union[str, bytes], token: Union[str, bytes], alg: str = default_alg) -> Tuple[dict, dict]: """ Decodes the given token's header and payload and validates the signature. :param secret: The secret used to decode the token. Must match the secret used when creating the tok...

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def DualDBFlow(cls): """Decorator that creates AFF4 and RELDB flows from a given mixin.""" if issubclass(cls, flow.GRRFlow): raise ValueError("Mixin class shouldn't inherit from GRRFlow.") if cls.__name__[-5:] != "Mixin": raise ValueError("Flow mixin should have a name that ends in 'Mixin'.") flow_na...

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def url_concat( url: str, args: Union[ None, Dict[str, str], List[Tuple[str, str]], Tuple[Tuple[str, str], ...] ], ) -> str: """Concatenate url and arguments regardless of whether url has existing query parameters. ``args`` may be either a dictionary or a list of key-value pairs (th...

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def dispatch_event(self, event, *args): """Dispatches an event. Returns a boolean indicating whether or not a handler suppressed further handling of the event (even the last). """ if event not in self.event_handlers: _log.error("Dispatch requested for unknown event '...

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def little_endian(self): """ Return the little_endian attribute of the BFD file being processed. """ if not self._ptr: raise BfdException("BFD not initialized") return _bfd.get_bfd_attribute(self._ptr, BfdAttributes.IS_LITTLE_ENDIAN)

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def get_labels(ids_find): """ Labels to make Cannon model spectra """ a = pyfits.open("%s/lamost_catalog_full.fits" %LAB_DIR) data = a[1].data a.close() id_all = data['lamost_id'] id_all = np.array(id_all) id_all = np.array([val.strip() for val in id_all]) snr_all = data['cannon_snrg'] ...

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def prob(self, pw): """ returns the probabiltiy of pw in the model. P[pw] = n(pw)/n(__total__) """ return float(self._T.get(pw, 0)) / self._T[TOTALF_W]

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def find_project_file(start_dir, basename): '''Walk up the directory tree until we find a file of the given name.''' prefix = os.path.abspath(start_dir) while True: candidate = os.path.join(prefix, basename) if os.path.isfile(candidate): return candidate if os.path.exists...

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def save(cls, network, phases=[], filename=''): r""" Saves data from the given objects into the specified file. Parameters ---------- network : OpenPNM Network Object The network containing the desired data phases : list of OpenPNM Phase Objects (optional, d...

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def organization_memberships(self, organization): """ Retrieve tche organization fields for this organization. :param organization: Organization object or id """ return self._query_zendesk(self.endpoint.organization_memberships, 'organization_membership', id=organization)

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def to_native(self, value, context=None): """ Schematics deserializer override We return a phoenumbers.PhoneNumber object so any kind of formatting can be trivially performed. Additionally, some convenient properties have been added: e164: string formatted '+11234567890' ...

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def restore_bios_config(irmc_info, bios_config): """restore bios configuration This function sends a RESTORE BIOS request to the server. Then when the bios is ready for restoring, it will apply the provided settings and return. Note that this operation may take time. :param irmc_info: node inf...

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def index_whichnot(ol,value,which): ''' from elist.elist import * ol = [1,'a',3,'a',4,'a',5] index_whichnot(ol,'a',0) index_whichnot(ol,'a',1) index_whichnot(ol,'a',2) ''' length = ol.__len__() seq = -1 for i in range(0,length): if(value == ol[i]): ...

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def update(self, task_id, progress): """ Defines the current progress for this progress bar id in iteration units (not percent). If the given id does not exist or the given progress is identical to the current, then does nothing. Logger uses a redraw rate be...

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def isCountRate(self): """ isCountRate: Method or IRInputObject used to indicate if the science data is in units of counts or count rate. This method assumes that the keyword 'BUNIT' is in the header of the input FITS file. """ has_bunit = False if 'BUNIT...

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def get_performed_builds(self, id, **kwargs): """ Gets the set of builds performed during in a Product Milestone cycle This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please define a `callback` function to be invoked when re...

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def dens(self,R,z,phi=0.,t=0.,forcepoisson=False): """ NAME: dens PURPOSE: evaluate the density rho(R,z,t) INPUT: R - Cylindrical Galactocentric radius (can be Quantity) z - vertical height (can be Quantity) phi - azimuth (opt...

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def random_square_mask(shape, fraction): """Create a numpy array with specified shape and masked fraction. Args: shape: tuple, shape of the mask to create. fraction: float, fraction of the mask area to populate with `mask_scalar`. Returns: numpy.array: A numpy array storing the mask. """ mask =...

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def refine(video, **kwargs): """Refine a video by searching `TheTVDB <http://thetvdb.com/>`_. .. note:: This refiner only work for instances of :class:`~subliminal.video.Episode`. Several attributes can be found: * :attr:`~subliminal.video.Episode.series` * :attr:`~subliminal.video.E...

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def docopt(doc, argv=None, help=True, version=None, options_first=False): """Parse `argv` based on command-line interface described in `doc`. `docopt` creates your command-line interface based on its description that you pass as `doc`. Such description can contain --options, <positional-argument>, comm...

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def p_createx(self,t): """expression : kw_create kw_table nexists NAME '(' tablespecs ')' opt_inheritx | kw_create kw_table nexists NAME inheritx """ if len(t)==6: t[0] = CreateX(t[3], t[4], [], None, [], t[5]) else: all_constraints = {k:list(group) for k, group in itertool...

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def tf_lanczos_smallest_eigval(vector_prod_fn, matrix_dim, initial_vector, num_iter=1000, max_iter=1000, collapse_tol=1e-9, dtype=tf.f...

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def _add_finder(importer, finder): """Register a new pkg_resources path finder that does not replace the existing finder.""" existing_finder = _get_finder(importer) if not existing_finder: pkg_resources.register_finder(importer, finder) else: pkg_resources.register_finder(importer, ChainedFinder.of(ex...

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def register(cls, name: str, plugin: Type[ConnectionPlugin]) -> None: """Registers a connection plugin with a specified name Args: name: name of the connection plugin to register plugin: defined connection plugin class Raises: :obj:`nornir.core.exceptions.Co...

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def _set_pose_num(self, pose_num): """WARNING: Applies only to the MDAnalysis_Wrapper """ current_mobile_coord = self.mobile_origin_coord self.static_mobile_copy_uni.trajectory.ts._pos[self.static_num_atoms:,:] = self.zdock_trans_rot(self.grid_size, self.grid_spacing, self.init_t...

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def set_up_resource_parameters(self): """Set up the resource parameter for the add/edit view. """ name_parameter = StringParameter('UUID-1') name_parameter.name = self.resource_parameters['Resource name'] name_parameter.help_text = tr( 'Name of the resource that will ...

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def get_workflow_actions_for(brain_or_object): """Returns a list with the actions (transitions) supported by the workflows the object pass in is bound to. Note it returns all actions, not only those allowed for the object based on its current state and permissions. """ portal_type = api.get_portal_t...

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def img2img_transformer2d_tiny(): """Tiny params.""" hparams = img2img_transformer2d_base() hparams.num_decoder_layers = 2 hparams.hidden_size = 128 hparams.batch_size = 4 hparams.max_length = 128 hparams.attention_key_channels = hparams.attention_value_channels = 0 hparams.filter_size = 128 hparams.n...

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def build(self): """Builds the `HelicalHelix`.""" helical_helix = Polypeptide() primitive_coords = self.curve_primitive.coordinates helices = [Helix.from_start_and_end(start=primitive_coords[i], end=primitive_coords[i + 1], ...

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def get_mounts_by_path(): ''' Gets all mounted devices and paths :return: dict of mounted devices and related information by path ''' mount_info = [] f = open('/proc/mounts', 'r') for line in f: _tmp = line.split(" ") mount_info.append({'path': _tmp[1], ...

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def p_lpartselect_minus(self, p): 'lpartselect : identifier LBRACKET expression MINUSCOLON expression RBRACKET' p[0] = Partselect(p[1], p[3], Minus(p[3], p[5]), lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))

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def request_and_get_output(self, table, outtype, outfn): """ Shorthand for requesting an output file and then downloading it when ready. ## Arguments * `table` (str): The name of the table to export. * `outtype` (str): The type of output. Must be one of: CSV...

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def set_level(self, level, console_only=False): """ Defines the logging level (from standard logging module) for log messages. :param level: Level of logging for the file logger. :param console_only: [Optional] If True then the file logger...

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def style_from_dict(style_dict, include_defaults=True): """ Create a ``Style`` instance from a dictionary or other mapping. The dictionary is equivalent to the ``Style.styles`` dictionary from pygments, with a few additions: it supports 'reverse' and 'blink'. Usage:: style_from_dict({ ...

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def is_in(self, point_x, point_y): """ Test if the point is within this ellipse """ x = self.x_origin y = self.y_origin a = self.e_width#/2 # FIXME: Why divide by two b = self.e_height#/2 return ((point_x-x)**2/(a**2)) + ((point_y-y)**2/(b**2)) < 1.0

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32.444444

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def diag_stressor(self, stressor, name=None): """ Diagonalize one row of the stressor matrix for a flow analysis. This method takes one row of the F matrix and diagonalize to the full region/sector format. Footprints calculation based on this matrix show the flow of embodied stressors f...

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def steps_for_spec(builder, spec, processed_modules=None): ''' Sets `builder` configuration, and returns all the builder steps necessary to build `spec` and its dependencies. Traverses the dependencies in depth-first order, honoring the sequencing in each 'depends_on' list. ''' if processed...

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def to_file(self, destination, format='csv', csv_delimiter=',', csv_header=True): """Save the results to a local file in CSV format. Args: destination: path on the local filesystem for the saved results. format: the format to use for the exported data; currently only 'csv' is supported. csv_d...

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40.869565

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def emit_pdf(outputs, options): '''Runs the PDF conversion command to generate the PDF.''' cmd = options.pdf_cmd cmd = cmd.replace('%o', options.pdfname) if len(outputs) > 2: cmd_print = cmd.replace('%i', ' '.join(outputs[:2] + ['...'])) else: cmd_print = cmd.replace('%i', ' '.join...

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28.36

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def files(self, pattern=None, sort_key=lambda k: k, sort_reverse=False, abspath=False): """ Return a sorted list containing relative path of all files (recursively). :type pattern: str :param pattern: Unix style (glob like/gitignore like) pattern :param sort_key: key argument for sorte...

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36.733333

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def license_from_trove(trove): """Finds out license from list of trove classifiers. Args: trove: list of trove classifiers Returns: Fedora name of the package license or empty string, if no licensing information is found in trove classifiers. """ license = [] for classifi...

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39.176471

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def patch(self, measurementId): """ Patches the metadata associated with the new measurement, if this impacts the measurement length then a new measurement is created otherwise it just updates it in place. :param measurementId: :return: """ data = request.get_j...

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43.333333

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def _randomize_single_subject(data, seed=None): """Randomly permute the voxels of the subject. The subject is organized as Voxel x TR, this method shuffles the voxel dimension in place. Parameters ---------- data: 2D array in shape [nVoxels, nTRs] Activity image data to be shuffled. ...

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25.5

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def create_analysis(context, source, **kwargs): """Create a new Analysis. The source can be an Analysis Service or an existing Analysis, and all possible field values will be set to the values found in the source object. :param context: The analysis will be created inside this object. :param source...

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46.033333

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def get_name_init(self, name): """Get initial name of symbol. """ self._register_name(name) return self._var_name_mappers[name].get_init()

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27.666667

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def organization_subscription_delete(self, id, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/organization_subscriptions#delete-organization-subscription" api_path = "/api/v2/organization_subscriptions/{id}.json" api_path = api_path.format(id=id) return self.call(api_path, ...

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68.4

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def stream(self, date_created_from=values.unset, date_created_to=values.unset, limit=None, page_size=None): """ Streams ExecutionInstance records from the API as a generator stream. This operation lazily loads records as efficiently as possible until the limit is reached. ...

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def run(self): """ Run the deduplication process. We apply the removal strategy one duplicate set at a time to keep memory footprint low and make the log of actions easier to read. """ logger.info( "The {} strategy will be applied on each duplicate set.".format( ...

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def change_password(*_, user_id=None, password=None): """ Change user password """ click.echo(green('\nChange password:')) click.echo(green('-' * 40)) with get_app().app_context(): user = find_user(dict(id=user_id)) if not user: click.echo(red('User not found\n')) ...

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def location_check(lat, lon): """For use by Core client wrappers""" if not (isinstance(lat, number_types) and -90 <= lat <= 90): raise ValueError("Latitude: '{latitude}' invalid".format(latitude=lat)) if not (isinstance(lon, number_types) and -180 <= lon <= 180): raise V...

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def delete_lbaas_member(self, lbaas_member, lbaas_pool): """Deletes the specified lbaas_member.""" return self.delete(self.lbaas_member_path % (lbaas_pool, lbaas_member))

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def pruneChanges(self, changeHorizon): """ Called periodically by DBConnector, this method deletes changes older than C{changeHorizon}. """ if not changeHorizon: return None def thd(conn): changes_tbl = self.db.model.changes # First,...

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def rasterize_pdf( input_file, output_file, xres, yres, raster_device, log, pageno=1, page_dpi=None, rotation=None, filter_vector=False, ): """Rasterize one page of a PDF at resolution (xres, yres) in canvas units. The image is sized to match the integer pixels dimension...

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def exportFile(self, jobStoreFileID, dstUrl): """ Exports file to destination pointed at by the destination URL. Refer to :meth:`.AbstractJobStore.importFile` documentation for currently supported URL schemes. Note that the helper method _exportFile is used to read from the source and ...

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def max_entropy_distribution(node_indices, number_of_nodes): """Return the maximum entropy distribution over a set of nodes. This is different from the network's uniform distribution because nodes outside ``node_indices`` are fixed and treated as if they have only 1 state. Args: node_indic...

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def all(self, query=None, **kwargs): """ Gets all organizations. """ return super(OrganizationsProxy, self).all(query=query)

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def logpdf_sum(self, f, y, Y_metadata=None): """ Convenience function that can overridden for functions where this could be computed more efficiently """ return np.sum(self.logpdf(f, y, Y_metadata=Y_metadata))

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def path_or_git_url(self, repo, owner='kivy', branch='master', url_format='https://github.com/{owner}/{repo}.git', platform=None, squash_hyphen=True): """Get source location for a git checkout This method will check the `buildozer....

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def get_element(text_or_tree_or_element): """ Get back an ET.Element for several possible input formats """ if isinstance(text_or_tree_or_element, ET.Element): return text_or_tree_or_element elif isinstance(text_or_tree_or_element, ET.ElementTree): return text_or_tree_or_element.getr...

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def execute_command(parser, config, ext_classes): """ Banana banana """ res = 0 cmd = config.get('command') get_private_folder = config.get('get_private_folder', False) if cmd == 'help': parser.print_help() elif cmd == 'run' or get_private_folder: # git.mk backward compat ...

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def cluster(args): """ Creating clusters """ args = _check_args(args) read_stats_file = op.join(args.dir_out, "read_stats.tsv") if file_exists(read_stats_file): os.remove(read_stats_file) bam_file, seq_obj = _clean_alignment(args) logger.info("Parsing matrix file") seqL, y...

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def ptz_status_send(self, zoom, pan, tilt, force_mavlink1=False): ''' Transmits the actual Pan, Tilt and Zoom values of the camera unit zoom : The actual Zoom Value (uint8_t) pan : The Pan value in 10ths of degre...

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def mchirp_sampler_lnm(**kwargs): ''' Draw chirp mass samples for uniform-in-log model Parameters ---------- **kwargs: string Keyword arguments as model parameters and number of samples Returns ------- mchirp-astro: array The chirp mass samples...

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def add_masquerade(zone=None, permanent=True): ''' Enable masquerade on a zone. If zone is omitted, default zone will be used. .. versionadded:: 2015.8.0 CLI Example: .. code-block:: bash salt '*' firewalld.add_masquerade To enable masquerade on a specific zone .. code-bloc...

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def _represent_ordereddict(dump, tag, mapping, flow_style=None): """PyYAML representer function for OrderedDict. This is needed for yaml.safe_dump() to support OrderedDict. Courtesy: https://blog.elsdoerfer.name/2012/07/26/make-pyyaml-output-an-ordereddict/ """ value = [] node = yaml.Mappin...

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def serialize(self, method="urlencoded", lev=0, **kwargs): """ Convert this instance to another representation. Which representation is given by the choice of serialization method. :param method: A serialization method. Presently 'urlencoded', 'json', 'jwt' and 'dic...

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def get_shutit_pexpect_sessions(self, note=None): """Returns all the shutit_pexpect_session keys for this object. @return: list of all shutit_pexpect_session keys (pexpect_session_ids) """ self.handle_note(note) sessions = [] for key in self.shutit_pexpect_sessions: sessions.append(shutit_object.shutit_...

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def handle_rereduce(self, reduce_function_names, values): """Re-reduce a set of values, with a list of rereduction functions.""" # This gets a large list of reduction functions, given their names. reduce_functions = [] for reduce_function_name in reduce_function_names: try: ...

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def _dist_wrapper(): """Add temporary distribution build files (and then clean up).""" try: # Copy select *.rst files to *.txt for build. for rst_file, txt_file in zip(SDIST_RST_FILES, SDIST_TXT_FILES): local("cp %s %s" % (rst_file, txt_file)) # Perform action. yield...

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def connect(dbapi_connection, connection_record): """ Called once by SQLAlchemy for each new SQLite DB-API connection. Here is where we issue some PRAGMA statements to configure how we're going to access the SQLite database. @param dbapi_connection: A newly connecte...

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def create(cls, name, certificate): """ Create a new external VPN CA for signing internal gateway certificates. :param str name: Name of VPN CA :param str certificate: file name, path or certificate string. :raises CreateElementFailed: Failed creating cert with r...

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def write_force_constants_to_hdf5(force_constants, filename='force_constants.hdf5', p2s_map=None, physical_unit=None, compression=None): """Write force constants in hdf5 format. ...

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def filter_paths(pathnames, included_patterns=None, excluded_patterns=None, case_sensitive=True): """ Filters from a set of paths based on acceptable patterns and ignorable patterns. :param pathnames: A list of path names that will be filtered ...

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def timeout_exponential_backoff( retries: int, timeout: int, maximum: int, ) -> Iterator[int]: """ Timeouts generator with an exponential backoff strategy. Timeouts start spaced by `timeout`, after `retries` exponentially increase the retry delays until `maximum`, then maximum is re...

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def is_merged(self): """ :calls: `GET /repos/:owner/:repo/pulls/:number/merge <http://developer.github.com/v3/pulls>`_ :rtype: bool """ status, headers, data = self._requester.requestJson( "GET", self.url + "/merge" ) return status == 204

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def _transform_gradients(self, g): """ Transform the gradients by multiplying the gradient factor for each constraint to it. """ #py3 fix #[np.put(g, i, c.gradfactor(self.param_array[i], g[i])) for c, i in self.constraints.iteritems() if c != __fixed__] [np.put(g,...

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