kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def _format_select(formatter, name): """Modify the query selector by applying any formatters to it. Parameters ---------- formatter : str Hyphen-delimited formatter string where formatters are applied inside-out, e.g. the formatter string SEC_TO_MICRO-INTEGER-FORMAT_UTC_USEC applie...	[ "def", "_format_select", "(", "formatter", ",", "name", ")", ":", "for", "caster", "in", "formatter", ".", "split", "(", "'-'", ")", ":", "if", "caster", "==", "'SEC_TO_MICRO'", ":", "name", "=", "\"%s*1000000\"", "%", "name", "elif", "':'", "in", "caste...	28.896552	0.001155
def create_ui(self): ''' .. versionchanged:: 0.9 Update device registration in real-time while dragging video control point to new position. .. versionchanged:: 0.12 Add ``dynamic_electrode_state_shapes`` layer to show dynamic electrode actuations...	[ "def", "create_ui", "(", "self", ")", ":", "super", "(", "DmfDeviceCanvas", ",", "self", ")", ".", "create_ui", "(", ")", "self", ".", "video_sink", "=", "VideoSink", "(", "*", "[", "self", ".", "socket_info", "[", "k", "]", "for", "k", "in", "[", ...	48.218182	0.000739
def generate_seviri_file(seviri, platform_name): """Generate the pyspectral internal common format relative response function file for one SEVIRI """ import h5py filename = os.path.join(seviri.output_dir, "rsr_seviri_{0}.h5".format(platform_name)) sat_name = platfor...	[ "def", "generate_seviri_file", "(", "seviri", ",", "platform_name", ")", ":", "import", "h5py", "filename", "=", "os", ".", "path", ".", "join", "(", "seviri", ".", "output_dir", ",", "\"rsr_seviri_{0}.h5\"", ".", "format", "(", "platform_name", ")", ")", "s...	38.263158	0.000671
def create_table_index(self): """Create the QTableView that will hold the index model.""" self.table_index = QTableView() self.table_index.horizontalHeader().hide() self.table_index.setEditTriggers(QTableWidget.NoEditTriggers) self.table_index.setHorizontalScrollBarPolicy(Qt...	[ "def", "create_table_index", "(", "self", ")", ":", "self", ".", "table_index", "=", "QTableView", "(", ")", "self", ".", "table_index", ".", "horizontalHeader", "(", ")", ".", "hide", "(", ")", "self", ".", "table_index", ".", "setEditTriggers", "(", "QTa...	60.666667	0.002165
def create_dataset(self, name, **kwargs): """Create an array. Parameters ---------- name : string Array name. data : array_like, optional Initial data. shape : int or tuple of ints Array shape. chunks : int or tuple of ints, op...	[ "def", "create_dataset", "(", "self", ",", "name", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_write_op", "(", "self", ".", "_create_dataset_nosync", ",", "name", ",", "", "", "kwargs", ")" ]	36.745455	0.000964
def handle_device_json(self, data): """Manage the device json list.""" self._device_json.insert(0, data) self._device_json.pop()	[ "def", "handle_device_json", "(", "self", ",", "data", ")", ":", "self", ".", "_device_json", ".", "insert", "(", "0", ",", "data", ")", "self", ".", "_device_json", ".", "pop", "(", ")" ]	37.25	0.013158
def random_forest_error(forest, X_train, X_test, inbag=None, calibrate=True, memory_constrained=False, memory_limit=None): """ Calculate error bars from scikit-learn RandomForest estimators. RandomForest is a regressor or classifier object this variance c...	[ "def", "random_forest_error", "(", "forest", ",", "X_train", ",", "X_test", ",", "inbag", "=", "None", ",", "calibrate", "=", "True", ",", "memory_constrained", "=", "False", ",", "memory_limit", "=", "None", ")", ":", "if", "inbag", "is", "None", ":", "...	38.990826	0.000229
def configure_doc_job( config_url, rosdistro_name, doc_build_name, repo_name, os_name, os_code_name, arch, config=None, build_file=None, index=None, dist_file=None, dist_cache=None, jenkins=None, views=None, is_disabled=False, groovy_script=None, doc_repos...	[ "def", "configure_doc_job", "(", "config_url", ",", "rosdistro_name", ",", "doc_build_name", ",", "repo_name", ",", "os_name", ",", "os_code_name", ",", "arch", ",", "config", "=", "None", ",", "build_file", "=", "None", ",", "index", "=", "None", ",", "dist...	39.505495	0.000271
def read_json(self): """ read metadata from json and set all the found properties. when overriding remember to wrap your calls in reading_ancillary_files :return: the read metadata :rtype: dict """ with reading_ancillary_files(self): if self.json_uri...	[ "def", "read_json", "(", "self", ")", ":", "with", "reading_ancillary_files", "(", "self", ")", ":", "if", "self", ".", "json_uri", "is", "None", ":", "metadata", "=", "self", ".", "_read_json_db", "(", ")", "else", ":", "metadata", "=", "self", ".", "...	38.217391	0.00222
def matchfieldnames(field_a, field_b): """Check match between two strings, ignoring case and spaces/underscores. Parameters ---------- a : str b : str Returns ------- bool """ normalised_a = field_a.replace(' ', '_').lower() normalised_b = field_b.replace(' ', ...	[ "def", "matchfieldnames", "(", "field_a", ",", "field_b", ")", ":", "normalised_a", "=", "field_a", ".", "replace", "(", "' '", ",", "'_'", ")", ".", "lower", "(", ")", "normalised_b", "=", "field_b", ".", "replace", "(", "' '", ",", "'_'", ")", ".", ...	21.235294	0.013263
def _get_json(self, urlpart): """ gets the result object dictionary """ url = self._url + "/%s" % urlpart params = { "f" : "json", } return self._get(url=url, param_dict=params, securityHandler=s...	[ "def", "_get_json", "(", "self", ",", "urlpart", ")", ":", "url", "=", "self", ".", "_url", "+", "\"/%s\"", "%", "urlpart", "params", "=", "{", "\"f\"", ":", "\"json\"", ",", "}", "return", "self", ".", "_get", "(", "url", "=", "url", ",", "param_d...	31.357143	0.015487
async def get_play_info(self) -> PlayInfo: """Return of the device.""" info = await self.services["avContent"]["getPlayingContentInfo"]({}) return PlayInfo.make(**info.pop())	[ "async", "def", "get_play_info", "(", "self", ")", "->", "PlayInfo", ":", "info", "=", "await", "self", ".", "services", "[", "\"avContent\"", "]", "[", "\"getPlayingContentInfo\"", "]", "(", "{", "}", ")", "return", "PlayInfo", ".", "make", "(", "", "...	49	0.01005
def process_tree_recur(self, file_names, node): """ Adds the names of all the files associated with the sub-tree rooted by `node` to `file_names` in post-order. :param file_names: A global list containing all file names associated with a tree :param node: The root of the current sub-tree...	[ "def", "process_tree_recur", "(", "self", ",", "file_names", ",", "node", ")", ":", "# Process node's children", "for", "child_node", "in", "node", ".", "children", ":", "self", ".", "process_tree_recur", "(", "file_names", ",", "child_node", ")", "# Call children...	50.25	0.008143
def coarsen_all_traces(level=2, exponential=False, axes="all", figure=None): """ This function does nearest-neighbor coarsening of the data. See spinmob.fun.coarsen_data for more information. Parameters ---------- level=2 How strongly to coarsen. exponential=False If Tr...	[ "def", "coarsen_all_traces", "(", "level", "=", "2", ",", "exponential", "=", "False", ",", "axes", "=", "\"all\"", ",", "figure", "=", "None", ")", ":", "if", "axes", "==", "\"gca\"", ":", "axes", "=", "_pylab", ".", "gca", "(", ")", "if", "axes", ...	27.818182	0.010526
def _resolve_access(self, addr, size): """ Resolves a memory access of a certain size. Returns a sequence of the bases, offsets, and sizes of the accesses required to fulfil this. """ # if we fit in one word first_offset = addr % self.width first_base = addr - fi...	[ "def", "_resolve_access", "(", "self", ",", "addr", ",", "size", ")", ":", "# if we fit in one word", "first_offset", "=", "addr", "%", "self", ".", "width", "first_base", "=", "addr", "-", "first_offset", "if", "first_offset", "+", "size", "<=", "self", "."...	37.181818	0.008343
def copy_file(self, path, prefixed_path, source_storage): """ Overwritten to execute only with --upload-unhashed-files param or StaticCloudinaryStorage. Otherwise only hashed files will be uploaded during postprocessing. """ if (settings.STATICFILES_STORAGE == 'cloudinary_storage...	[ "def", "copy_file", "(", "self", ",", "path", ",", "prefixed_path", ",", "source_storage", ")", ":", "if", "(", "settings", ".", "STATICFILES_STORAGE", "==", "'cloudinary_storage.storage.StaticCloudinaryStorage'", "or", "self", ".", "upload_unhashed_files", ")", ":", ...	59.25	0.008316
def run(self): """Execute events until the queue is empty. When there is a positive delay until the first event, the delay function is called and the event is left in the queue; otherwise, the event is removed from the queue and executed (its action function is called, passing it...	[ "def", "run", "(", "self", ")", ":", "# localize variable access to minimize overhead", "# and to improve thread safety", "q", "=", "self", ".", "_queue", "delayfunc", "=", "self", ".", "delayfunc", "timefunc", "=", "self", ".", "timefunc", "pop", "=", "heapq", "....	44.410256	0.00113
def filter(cls, parent=None, **filters): """ Gets all resources of the given type and parent (if provided) which match the given filters. This will trigger an api GET request. :param parent ResourceBase: the parent of the resource - used for nesting the request url, optional :par...	[ "def", "filter", "(", "cls", ",", "parent", "=", "None", ",", "", "", "filters", ")", ":", "data", "=", "cls", ".", "_process_filter_request", "(", "parent", ",", "", "", "filters", ")", "return", "cls", ".", "_load_resources", "(", "data", ")" ]	55.6	0.00885
def cli(sequencepath, report, refseq_database): """ Pass command line arguments to, and run the feature extraction functions """ main(sequencepath, report, refseq_database, num_threads=multiprocessing.cpu_count())	[ "def", "cli", "(", "sequencepath", ",", "report", ",", "refseq_database", ")", ":", "main", "(", "sequencepath", ",", "report", ",", "refseq_database", ",", "num_threads", "=", "multiprocessing", ".", "cpu_count", "(", ")", ")" ]	45	0.008734
def print_to_file(object): """ Function takes in object of type str, list, or dict and prints out to current working directory as pyoutput.txt :param: Object: object of type str, list, or dict :return: No return. Just prints out to file handler and save to current working directory as pyoutput.txt ...	[ "def", "print_to_file", "(", "object", ")", ":", "with", "open", "(", "'pyoutput.txt'", ",", "'w'", ")", "as", "fh", ":", "x", "=", "None", "if", "type", "(", "object", ")", "is", "list", ":", "x", "=", "json", ".", "dumps", "(", "object", ",", "...	40.333333	0.01454
def send_email(subject, message, sender, recipients, image_png=None): """ Decides whether to send notification. Notification is cancelled if there are no recipients or if stdout is onto tty or if in debug mode. Dispatches on config value email.method. Default is 'smtp'. """ notifiers = { ...	[ "def", "send_email", "(", "subject", ",", "message", ",", "sender", ",", "recipients", ",", "image_png", "=", "None", ")", ":", "notifiers", "=", "{", "'ses'", ":", "send_email_ses", ",", "'sendgrid'", ":", "send_email_sendgrid", ",", "'smtp'", ":", "send_em...	33.189189	0.001582
def variable(dims=1): """ Simple constructor to create single variables to create polynomials. Args: dims (int): Number of dimensions in the array. Returns: (Poly): Polynomial array with unit components in each dimension. Examples: >>> print(variabl...	[ "def", "variable", "(", "dims", "=", "1", ")", ":", "if", "dims", "==", "1", ":", "return", "Poly", "(", "{", "(", "1", ",", ")", ":", "1", "}", ",", "dim", "=", "1", ",", "shape", "=", "(", ")", ")", "return", "Poly", "(", "{", "tuple", ...	24.478261	0.001709
def GetRootKey(self): """Retrieves the Windows Registry root key. Returns: WinRegistryKey: Windows Registry root key. Raises: RuntimeError: if there are multiple matching mappings and the correct mapping cannot be resolved. """ root_registry_key = virtual.VirtualWinRegistryKe...	[ "def", "GetRootKey", "(", "self", ")", ":", "root_registry_key", "=", "virtual", ".", "VirtualWinRegistryKey", "(", "''", ")", "for", "mapped_key", "in", "self", ".", "_MAPPED_KEYS", ":", "key_path_segments", "=", "key_paths", ".", "SplitKeyPath", "(", "mapped_k...	32.742857	0.008475
def Then(self, f, args, kwargs): """ `Then(f, ...)` is equivalent to `ThenAt(1, f, ...)`. Checkout `phi.builder.Builder.ThenAt` for more information. """ return self.ThenAt(1, f, args, **kwargs)	[ "def", "Then", "(", "self", ",", "f", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "ThenAt", "(", "1", ",", "f", ",", "", "args", ",", "", "", "kwargs", ")" ]	43.6	0.013514
def cluster_target(): "Not so applicable for this sample" start_centers = [[0.2, 0.2], [0.0, -2.0], [3.0, -3.0], [3.0, 3.0], [-3.0, 3.0], [-3.0, -3.0]] template_clustering(start_centers, FCPS_SAMPLES.SAMPLE_TARGET, criterion = splitting_type.BAYESIAN_INFORMATION_CRITERION) template_clustering(start_...	[ "def", "cluster_target", "(", ")", ":", "start_centers", "=", "[", "[", "0.2", ",", "0.2", "]", ",", "[", "0.0", ",", "-", "2.0", "]", ",", "[", "3.0", ",", "-", "3.0", "]", ",", "[", "3.0", ",", "3.0", "]", ",", "[", "-", "3.0", ",", "3.0"...	83.4	0.019002
def majority(p, a, b, c): """Majority gate.""" p.cx(c, b) p.cx(c, a) p.ccx(a, b, c)	[ "def", "majority", "(", "p", ",", "a", ",", "b", ",", "c", ")", ":", "p", ".", "cx", "(", "c", ",", "b", ")", "p", ".", "cx", "(", "c", ",", "a", ")", "p", ".", "ccx", "(", "a", ",", "b", ",", "c", ")" ]	19	0.010101
def fromimage(im, flatten=False, mode=None): """ Return a copy of a PIL image as a numpy array. Parameters ---------- im : PIL image Input image. flatten : bool If true, convert the output to grey-scale. mode : str, optional Mode to convert image to, e.g. ``'RGB'``. ...	[ "def", "fromimage", "(", "im", ",", "flatten", "=", "False", ",", "mode", "=", "None", ")", ":", "if", "not", "Image", ".", "isImageType", "(", "im", ")", ":", "raise", "TypeError", "(", "\"Input is not a PIL image.\"", ")", "if", "mode", "is", "not", ...	31.705882	0.0006
def __display_stats(self): """Display some stats regarding unify process""" self.display('unify.tmpl', processed=self.total, matched=self.matched, unified=self.total - self.matched)	[ "def", "__display_stats", "(", "self", ")", ":", "self", ".", "display", "(", "'unify.tmpl'", ",", "processed", "=", "self", ".", "total", ",", "matched", "=", "self", ".", "matched", ",", "unified", "=", "self", ".", "total", "-", "self", ".", "matche...	39.166667	0.008333
def delete(ctx, opts, owner_repo_identifier, yes): """ Delete an entitlement from a repository. - OWNER/REPO/IDENTIFIER: Specify the OWNER namespace (i.e. user or org), and the REPO name that has an entitlement identified by IDENTIFIER. All separated by a slash. Example: 'your-org/your...	[ "def", "delete", "(", "ctx", ",", "opts", ",", "owner_repo_identifier", ",", "yes", ")", ":", "owner", ",", "repo", ",", "identifier", "=", "owner_repo_identifier", "delete_args", "=", "{", "\"identifier\"", ":", "click", ".", "style", "(", "identifier", ","...	30.55	0.001586
def cp(i): """ Input: { (repo_uoa) - repo UOA module_uoa - module UOA data_uoa - data UOA xcids[0] - {'repo_uoa', 'module_uoa', 'data_uoa'} - new CID or (new_repo_uoa) - new repo UOA ...	[ "def", "cp", "(", "i", ")", ":", "move", "=", "i", ".", "get", "(", "'move'", ",", "''", ")", "# Check if global writing is allowed", "r", "=", "check_writing", "(", "{", "}", ")", "if", "r", "[", "'return'", "]", ">", "0", ":", "return", "r", "imp...	25.384181	0.048619
def send(self, s): '''Sends string ``s`` to the child process, returning the number of bytes written. If a logfile is specified, a copy is written to that log. The default terminal input mode is canonical processing unless set otherwise by the child process. This allows backspac...	[ "def", "send", "(", "self", ",", "s", ")", ":", "if", "self", ".", "delaybeforesend", "is", "not", "None", ":", "time", ".", "sleep", "(", "self", ".", "delaybeforesend", ")", "s", "=", "self", ".", "_coerce_send_string", "(", "s", ")", "self", ".", ...	41.255814	0.001101
def update(self, other, kwargs): """ A dict-like update for Struct attributes. """ if other is None: return if not isinstance(other, dict): other = other.to_dict() self.__dict__.update(other, kwargs)	[ "def", "update", "(", "self", ",", "other", ",", "", "", "kwargs", ")", ":", "if", "other", "is", "None", ":", "return", "if", "not", "isinstance", "(", "other", ",", "dict", ")", ":", "other", "=", "other", ".", "to_dict", "(", ")", "self", "....	28.444444	0.011364
def write(self, *string): """ Writes to the output """ self._output.write(' '.join([six.text_type(s) for s in string])) return self	[ "def", "write", "(", "self", ",", "*", "string", ")", ":", "self", ".", "_output", ".", "write", "(", "' '", ".", "join", "(", "[", "six", ".", "text_type", "(", "s", ")", "for", "s", "in", "string", "]", ")", ")", "return", "self" ]	27.666667	0.011696
def process_docstring(app, what, name, obj, options, lines): """Process the docstring for a given python object. Called when autodoc has read and processed a docstring. `lines` is a list of docstring lines that `_process_docstring` modifies in place to change what Sphinx outputs. The following set...	[ "def", "process_docstring", "(", "app", ",", "what", ",", "name", ",", "obj", ",", "options", ",", "lines", ")", ":", "result_lines", "=", "lines", "if", "app", ".", "config", ".", "napoleon_numpy_docstring", ":", "docstring", "=", "ExtendedNumpyDocstring", ...	40.22	0.000485
def _generate_type_code_query(self, value): """Generate type-code queries. Notes: If the value of the type-code query exists in `TYPECODE_VALUE_TO_FIELD_AND_VALUE_PAIRS_MAPPING, then we query the specified field, along with the given value according to the mapping. S...	[ "def", "_generate_type_code_query", "(", "self", ",", "value", ")", ":", "mapping_for_value", "=", "self", ".", "TYPECODE_VALUE_TO_FIELD_AND_VALUE_PAIRS_MAPPING", ".", "get", "(", "value", ",", "None", ")", "if", "mapping_for_value", ":", "return", "generate_match_que...	45.782609	0.008372
def _index_param_value(num_samples, v, indices): """Private helper function for parameter value indexing. This determines whether a fit parameter `v` to a SearchCV.fit should be indexed along with `X` and `y`. Note that this differs from the scikit-learn version. They pass `X` and compute num_samples. ...	[ "def", "_index_param_value", "(", "num_samples", ",", "v", ",", "indices", ")", ":", "if", "not", "_is_arraylike", "(", "v", ")", "or", "_num_samples", "(", "v", ")", "!=", "num_samples", ":", "# pass through: skip indexing", "return", "v", "if", "sp", ".", ...	39.214286	0.001779
def _cal_dist2center(X, center): """ Calculate the SSE to the cluster center """ dmemb2cen = scipy.spatial.distance.cdist(X, center.reshape(1,X.shape[1]), metric='seuclidean') return(np.sum(dmemb2cen))	[ "def", "_cal_dist2center", "(", "X", ",", "center", ")", ":", "dmemb2cen", "=", "scipy", ".", "spatial", ".", "distance", ".", "cdist", "(", "X", ",", "center", ".", "reshape", "(", "1", ",", "X", ".", "shape", "[", "1", "]", ")", ",", "metric", ...	42.6	0.013825
def footprint(config, nside=None): """ UNTESTED. Should return a boolean array representing the pixels in the footprint. """ config = Config(config) if nside is None: nside = config['coords']['nside_pixel'] elif nside < config['coords']['nside_catalog']: raise Exception('Requ...	[ "def", "footprint", "(", "config", ",", "nside", "=", "None", ")", ":", "config", "=", "Config", "(", "config", ")", "if", "nside", "is", "None", ":", "nside", "=", "config", "[", "'coords'", "]", "[", "'nside_pixel'", "]", "elif", "nside", "<", "con...	41	0.008518
def delete_element_when_value_none(data_structure): """ This method remove all entries in a Python dict when its value is None. :param data_structure: Python dict (lists are supported). e.i: [{"element1": "e1", "element2": {"element2.1": "e2", "element2.2": ...	[ "def", "delete_element_when_value_none", "(", "data_structure", ")", ":", "if", "isinstance", "(", "data_structure", ",", "list", ")", ":", "for", "element", "in", "data_structure", ":", "delete_element_when_value_none", "(", "element", ")", "elif", "isinstance", "(...	42.5	0.001918
def write(self): """Write the configuration.""" if self.dirty: with open(self._cache_path, "w") as output_file: self._config.write(output_file)	[ "def", "write", "(", "self", ")", ":", "if", "self", ".", "dirty", ":", "with", "open", "(", "self", ".", "_cache_path", ",", "\"w\"", ")", "as", "output_file", ":", "self", ".", "_config", ".", "write", "(", "output_file", ")" ]	36.6	0.010695
def close(self): """Flush and close the stream. This is called automatically by the base resource on resources unless the resource is operating asynchronously; in that case, this method MUST be called in order to signal the end of the request. If not the request will simply hang...	[ "def", "close", "(", "self", ")", ":", "# Ensure we're not closed.", "self", ".", "require_not_closed", "(", ")", "if", "not", "self", ".", "streaming", "or", "self", ".", "asynchronous", ":", "# We're not streaming, auto-write content-length if not", "# already set.", ...	36.56	0.002132
def decode_int(stream, signed=False): """ Decode C{int}. """ n = result = 0 b = stream.read_uchar() while b & 0x80 != 0 and n < 3: result <<= 7 result \|= b & 0x7f b = stream.read_uchar() n += 1 if n < 3: result <<= 7 result \|= b else: ...	[ "def", "decode_int", "(", "stream", ",", "signed", "=", "False", ")", ":", "n", "=", "result", "=", "0", "b", "=", "stream", ".", "read_uchar", "(", ")", "while", "b", "&", "0x80", "!=", "0", "and", "n", "<", "3", ":", "result", "<<=", "7", "re...	18.642857	0.001821
def indexbox(msg="Shall I continue?" , title=" " , choices=("Yes","No") , image=None ): """ Display a buttonbox with the specified choices. Return the index of the choice selected. """ reply = buttonbox(msg=msg, choices=choices, title=title, image=image) index = -1 for choice...	[ "def", "indexbox", "(", "msg", "=", "\"Shall I continue?\"", ",", "title", "=", "\" \"", ",", "choices", "=", "(", "\"Yes\"", ",", "\"No\"", ")", ",", "image", "=", "None", ")", ":", "reply", "=", "buttonbox", "(", "msg", "=", "msg", ",", "choices", ...	30.375	0.021956
def get(cls, **kwargs): """Retrieve an object by making a GET request to Transifex. Each value in `kwargs` that corresponds to a field defined in `self.url_fields` will be used in the URL path of the request, so that a particular entry of this model is identified and retrieved. ...	[ "def", "get", "(", "cls", ",", "", "", "kwargs", ")", ":", "fields", "=", "{", "}", "for", "field", "in", "cls", ".", "url_fields", ":", "value", "=", "kwargs", ".", "pop", "(", "field", ",", "None", ")", "if", "value", "is", "None", ":", "cl...	38.16129	0.001649
def set_number_of_atoms( self, n, selected_sites=None ): """ Set the number of atoms for the simulation, and populate the simulation lattice. Args: n (Int): Number of atoms for this simulation. selected_sites (:obj:(List\|Set\|String), optional): Selects a subset of site t...	[ "def", "set_number_of_atoms", "(", "self", ",", "n", ",", "selected_sites", "=", "None", ")", ":", "self", ".", "number_of_atoms", "=", "n", "self", ".", "atoms", "=", "species", ".", "Species", "(", "self", ".", "lattice", ".", "populate_sites", "(", "s...	43.153846	0.019197
def get(self): '''Called by the protocol consumer''' if self._current: return self._resume(self._current, False) else: return self._get(None)	[ "def", "get", "(", "self", ")", ":", "if", "self", ".", "_current", ":", "return", "self", ".", "_resume", "(", "self", ".", "_current", ",", "False", ")", "else", ":", "return", "self", ".", "_get", "(", "None", ")" ]	30.666667	0.010582
def canonical(self): """Convert URL to its canonical form.""" def full_unescape(u): uu = urllib.unquote(u) if uu == u: return uu else: return full_unescape(uu) def full_unescape_to_bytes(u): uu = urlparse.unquote_to...	[ "def", "canonical", "(", "self", ")", ":", "def", "full_unescape", "(", "u", ")", ":", "uu", "=", "urllib", ".", "unquote", "(", "u", ")", "if", "uu", "==", "u", ":", "return", "uu", "else", ":", "return", "full_unescape", "(", "uu", ")", "def", ...	36.432432	0.000722
async def _on_event(self, event_): """Receive a hangouts_pb2.Event and fan out to Conversations. Args: event_: hangouts_pb2.Event instance """ conv_id = event_.conversation_id.id try: conv = await self._get_or_fetch_conversation(conv_id) except ex...	[ "async", "def", "_on_event", "(", "self", ",", "event_", ")", ":", "conv_id", "=", "event_", ".", "conversation_id", ".", "id", "try", ":", "conv", "=", "await", "self", ".", "_get_or_fetch_conversation", "(", "conv_id", ")", "except", "exceptions", ".", "...	38.714286	0.002401
def handle_symbol_info(self, call_id, payload): """Handler for response `SymbolInfo`.""" with catch(KeyError, lambda e: self.editor.message("unknown_symbol")): decl_pos = payload["declPos"] f = decl_pos.get("file") call_options = self.call_options[call_id] ...	[ "def", "handle_symbol_info", "(", "self", ",", "call_id", ",", "payload", ")", ":", "with", "catch", "(", "KeyError", ",", "lambda", "e", ":", "self", ".", "editor", ".", "message", "(", "\"unknown_symbol\"", ")", ")", ":", "decl_pos", "=", "payload", "[...	46.782609	0.001821
def generate_license(template, context): """ Generate a license by extracting variables from the template and replacing them with the corresponding values in the given context. """ out = StringIO() content = template.getvalue() for key in extract_vars(template): if key not in context...	[ "def", "generate_license", "(", "template", ",", "context", ")", ":", "out", "=", "StringIO", "(", ")", "content", "=", "template", ".", "getvalue", "(", ")", "for", "key", "in", "extract_vars", "(", "template", ")", ":", "if", "key", "not", "in", "con...	43.461538	0.001733
def get_op_result_name(left, right): """ Find the appropriate name to pin to an operation result. This result should always be either an Index or a Series. Parameters ---------- left : {Series, Index} right : object Returns ------- name : object Usually a string ""...	[ "def", "get_op_result_name", "(", "left", ",", "right", ")", ":", "# `left` is always a pd.Series when called from within ops", "if", "isinstance", "(", "right", ",", "(", "ABCSeries", ",", "pd", ".", "Index", ")", ")", ":", "name", "=", "_maybe_match_name", "(", ...	24.285714	0.001887
def _FetchCustomMappings(descriptor_ls): """Find and return all custom mappings for descriptors in descriptor_ls.""" custom_mappings = [] for descriptor in descriptor_ls: if isinstance(descriptor, ExtendedEnumDescriptor): custom_mappings.extend( _FormatCustomJsonMapping('...	[ "def", "_FetchCustomMappings", "(", "descriptor_ls", ")", ":", "custom_mappings", "=", "[", "]", "for", "descriptor", "in", "descriptor_ls", ":", "if", "isinstance", "(", "descriptor", ",", "ExtendedEnumDescriptor", ")", ":", "custom_mappings", ".", "extend", "(",...	48.058824	0.0012
def get_params(job_inis, **kw): """ Parse one or more INI-style config files. :param job_inis: List of configuration files (or list containing a single zip archive) :param kw: Optionally override some parameters :returns: A dictionary of parameters """ input_zip = No...	[ "def", "get_params", "(", "job_inis", ",", "", "", "kw", ")", ":", "input_zip", "=", "None", "if", "len", "(", "job_inis", ")", "==", "1", "and", "job_inis", "[", "0", "]", ".", "endswith", "(", "'.zip'", ")", ":", "input_zip", "=", "job_inis", "...	34.625	0.000702
def atoms(lines): """Parse atom block into atom objects Returns: dict: networkx nodes """ # Convert sdf style charge to actual charge conv_charge_table = {0: 0, 1: 3, 2: 2, 3: 1, 4: 0, 5: -1, 6: -2, 7: -3} results = {} for i, line in enumerate(lines): symbol = line[31:34].rs...	[ "def", "atoms", "(", "lines", ")", ":", "# Convert sdf style charge to actual charge", "conv_charge_table", "=", "{", "0", ":", "0", ",", "1", ":", "3", ",", "2", ":", "2", ",", "3", ":", "1", ",", "4", ":", "0", ",", "5", ":", "-", "1", ",", "6"...	32	0.001011
def create_query_index( self, design_document_id=None, index_name=None, index_type='json', partitioned=False, **kwargs ): """ Creates either a JSON or a text query index in the remote database. :param str index_type: Th...	[ "def", "create_query_index", "(", "self", ",", "design_document_id", "=", "None", ",", "index_name", "=", "None", ",", "index_type", "=", "'json'", ",", "partitioned", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "index_type", "==", "JSON_INDEX_TYP...	52.25	0.001084
def formdata_encode(fields): """Encode fields (a dict) as a multipart/form-data HTTP request payload. Returns a (content type, request body) pair. """ BOUNDARY = '----form-data-boundary-ZmRkNzJkMjUtMjkyMC00' out = [] for (key, value) in fields.items(): out.append('--' + BOUNDARY) ...	[ "def", "formdata_encode", "(", "fields", ")", ":", "BOUNDARY", "=", "'----form-data-boundary-ZmRkNzJkMjUtMjkyMC00'", "out", "=", "[", "]", "for", "(", "key", ",", "value", ")", "in", "fields", ".", "items", "(", ")", ":", "out", ".", "append", "(", "'--'",...	37.3125	0.001634
def Get(self,key): """Get disk by providing mount point or ID If key is not unique and finds multiple matches only the first will be returned """ for disk in self.disks: if disk.id == key: return(disk) elif key in disk.partition_paths: return(disk)	[ "def", "Get", "(", "self", ",", "key", ")", ":", "for", "disk", "in", "self", ".", "disks", ":", "if", "disk", ".", "id", "==", "key", ":", "return", "(", "disk", ")", "elif", "key", "in", "disk", ".", "partition_paths", ":", "return", "(", "disk...	25.9	0.052239
def wbem_request(url, data, creds, cimxml_headers=None, debug=False, x509=None, verify_callback=None, ca_certs=None, no_verification=False, timeout=None, recorders=None, conn_id=None): # pylint: disable=too-many-arguments,unused-argument # pylint: disable=too-m...	[ "def", "wbem_request", "(", "url", ",", "data", ",", "creds", ",", "cimxml_headers", "=", "None", ",", "debug", "=", "False", ",", "x509", "=", "None", ",", "verify_callback", "=", "None", ",", "ca_certs", "=", "None", ",", "no_verification", "=", "False...	46.047692	0.000131
def make_prototype_request(args, kwargs): """Make a prototype Request for a Matcher.""" if args and inspect.isclass(args[0]) and issubclass(args[0], Request): request_cls, arg_list = args[0], args[1:] return request_cls(arg_list, **kwargs) if args and isinstance(args[0], Request): ...	[ "def", "make_prototype_request", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "args", "and", "inspect", ".", "isclass", "(", "args", "[", "0", "]", ")", "and", "issubclass", "(", "args", "[", "0", "]", ",", "Request", ")", ":", "reque...	39	0.002088
def get(path, value='', load_path=None): ''' Get a value for a specific augeas path CLI Example: .. code-block:: bash salt '*' augeas.get /files/etc/hosts/1/ ipaddr path The path to get the value of value The optional value to get .. versionadded:: 2016.3.0 ...	[ "def", "get", "(", "path", ",", "value", "=", "''", ",", "load_path", "=", "None", ")", ":", "load_path", "=", "_check_load_paths", "(", "load_path", ")", "aug", "=", "_Augeas", "(", "loadpath", "=", "load_path", ")", "ret", "=", "{", "}", "path", "=...	21.162791	0.00105
def _check_for_api_errors(geocoding_results): """ Raise any exceptions if there were problems reported in the api response. """ status_result = geocoding_results.get("STATUS", {}) if "NO_RESULTS" in status_result.get("status", ""): return api_call_succ...	[ "def", "_check_for_api_errors", "(", "geocoding_results", ")", ":", "status_result", "=", "geocoding_results", ".", "get", "(", "\"STATUS\"", ",", "{", "}", ")", "if", "\"NO_RESULTS\"", "in", "status_result", ".", "get", "(", "\"status\"", ",", "\"\"", ")", ":...	41.631579	0.002472
def clear(self): """Clear the cache""" with self.lock: self.relations.clear() self.schemas.clear()	[ "def", "clear", "(", "self", ")", ":", "with", "self", ".", "lock", ":", "self", ".", "relations", ".", "clear", "(", ")", "self", ".", "schemas", ".", "clear", "(", ")" ]	26.8	0.014493
def _resolve_assignment_parts(parts, assign_path, context): """recursive function to resolve multiple assignments""" assign_path = assign_path[:] index = assign_path.pop(0) for part in parts: assigned = None if isinstance(part, nodes.Dict): # A dictionary in an iterating cont...	[ "def", "_resolve_assignment_parts", "(", "parts", ",", "assign_path", ",", "context", ")", ":", "assign_path", "=", "assign_path", "[", ":", "]", "index", "=", "assign_path", ".", "pop", "(", "0", ")", "for", "part", "in", "parts", ":", "assigned", "=", ...	33.710526	0.000759
def printInvoice(self, REQUEST=None, RESPONSE=None): """Print invoice """ invoice = self.getInvoice() invoice_url = invoice.absolute_url() RESPONSE.redirect('{}/invoice_print'.format(invoice_url))	[ "def", "printInvoice", "(", "self", ",", "REQUEST", "=", "None", ",", "RESPONSE", "=", "None", ")", ":", "invoice", "=", "self", ".", "getInvoice", "(", ")", "invoice_url", "=", "invoice", ".", "absolute_url", "(", ")", "RESPONSE", ".", "redirect", "(", ...	38.5	0.008475
def eparOptionFactory(master, statusBar, param, defaultParam, doScroll, fieldWidths, plugIn=None, editedCallbackObj=None, helpCallbackObj=None, mainGuiObj=None, defaultsVerb="Default", bg=None, indent=False, fl...	[ "def", "eparOptionFactory", "(", "master", ",", "statusBar", ",", "param", ",", "defaultParam", ",", "doScroll", ",", "fieldWidths", ",", "plugIn", "=", "None", ",", "editedCallbackObj", "=", "None", ",", "helpCallbackObj", "=", "None", ",", "mainGuiObj", "=",...	38.258065	0.000822
def _getConfigPath(self): """ Gets the currently configured config path. :return: the path, raises ValueError if it doesn't exist. """ confHome = environ.get('VIBE_CONFIG_HOME') return confHome if confHome is not None else path.join(path.expanduser("~"), '.vibe')	[ "def", "_getConfigPath", "(", "self", ")", ":", "confHome", "=", "environ", ".", "get", "(", "'VIBE_CONFIG_HOME'", ")", "return", "confHome", "if", "confHome", "is", "not", "None", "else", "path", ".", "join", "(", "path", ".", "expanduser", "(", "\"~\"", ...	43.571429	0.009646
def get_subset_ids(path): """ Return a list with ids of all available subsets (based on existing csv-files). """ all = [] for path in glob.glob(os.path.join(path, '*.tsv')): file_name = os.path.split(path)[1] basename = os.path.splitext(file_name)[0] all.appe...	[ "def", "get_subset_ids", "(", "path", ")", ":", "all", "=", "[", "]", "for", "path", "in", "glob", ".", "glob", "(", "os", ".", "path", ".", "join", "(", "path", ",", "'*.tsv'", ")", ")", ":", "file_name", "=", "os", ".", "path", ".", "split", ...	34.3	0.008523
def partition_items(count, bin_size): """ Given the total number of items, determine the number of items that can be added to each bin with a limit on the bin size. So if you want to partition 11 items into groups of 3, you'll want three of three and one of two. >>> partition_items(11, 3) [3, 3, 3, 2] But if...	[ "def", "partition_items", "(", "count", ",", "bin_size", ")", ":", "num_bins", "=", "int", "(", "math", ".", "ceil", "(", "count", "/", "float", "(", "bin_size", ")", ")", ")", "bins", "=", "[", "0", "]", "*", "num_bins", "for", "i", "in", "range",...	25.409091	0.031034
def _is_string(thing): """Check that thing is a string. The definition of the latter depends upon the Python version. :param thing: The thing to check if it's a string. :rtype: bool :returns: ``True`` if thing is string (or unicode in Python2). """ if (_py3k and isinstance(thing, st...	[ "def", "_is_string", "(", "thing", ")", ":", "if", "(", "_py3k", "and", "isinstance", "(", "thing", ",", "str", ")", ")", ":", "return", "True", "if", "(", "not", "_py3k", "and", "isinstance", "(", "thing", ",", "basestring", ")", ")", ":", "return",...	32.538462	0.002299
def main(argv=None): # IGNORE:C0111 ''' Main Entry ''' by = None reqres = check_requirements() if reqres == CheckResult.Error: perr("Requirement checking failed") sys.exit(const.EFatal) try: result = const.ENoError if argv is None: argv = sys.argv else: sys.argv.extend(argv) setuphandlers() ...	[ "def", "main", "(", "argv", "=", "None", ")", ":", "# IGNORE:C0111", "by", "=", "None", "reqres", "=", "check_requirements", "(", ")", "if", "reqres", "==", "CheckResult", ".", "Error", ":", "perr", "(", "\"Requirement checking failed\"", ")", "sys", ".", ...	32.458647	0.031243
def replace_wrep(t:str) -> str: "Replace word repetitions in `t`." def _replace_wrep(m:Collection[str]) -> str: c,cc = m.groups() return f' {TK_WREP} {len(cc.split())+1} {c} ' re_wrep = re.compile(r'(\b\w+\W+)(\1{3,})') return re_wrep.sub(_replace_wrep, t)	[ "def", "replace_wrep", "(", "t", ":", "str", ")", "->", "str", ":", "def", "_replace_wrep", "(", "m", ":", "Collection", "[", "str", "]", ")", "->", "str", ":", "c", ",", "cc", "=", "m", ".", "groups", "(", ")", "return", "f' {TK_WREP} {len(cc.split(...	40.285714	0.013889
def double( self ): """Return a new point that is twice the old.""" if self == INFINITY: return INFINITY # X9.62 B.3: p = self.__curve.p() a = self.__curve.a() l = ( ( 3 * self.__x * self.__x + a ) * \ numbertheory.inverse_mod( 2 * self.__y, p ) ) % p x3 = ( l * l - 2 * ...	[ "def", "double", "(", "self", ")", ":", "if", "self", "==", "INFINITY", ":", "return", "INFINITY", "# X9.62 B.3:", "p", "=", "self", ".", "__curve", ".", "p", "(", ")", "a", "=", "self", ".", "__curve", ".", "a", "(", ")", "l", "=", "(", "(", "...	22.722222	0.046948
def decrypt_ecb(self, data): """ Return an iterator that decrypts `data` using the Electronic Codebook (ECB) mode of operation. ECB mode can only operate on `data` that is a multiple of the block-size in length. Each iteration returns a block-sized :obj:`bytes` object (i.e. 8 bytes) ...	[ "def", "decrypt_ecb", "(", "self", ",", "data", ")", ":", "S1", ",", "S2", ",", "S3", ",", "S4", "=", "self", ".", "S", "P", "=", "self", ".", "P", "u4_1_pack", "=", "self", ".", "_u4_1_pack", "u1_4_unpack", "=", "self", ".", "_u1_4_unpack", "decry...	31.818182	0.010166
def write_stats_file(run_output_dict): """Writes a dummy PolyChord format .stats file for tests functions for processing stats files. This is written to: base_dir/file_root.stats Also returns the data in the file as a dict for comparison. Parameters ---------- run_output_dict: dict ...	[ "def", "write_stats_file", "(", "run_output_dict", ")", ":", "mandatory_keys", "=", "[", "'file_root'", ",", "'base_dir'", "]", "for", "key", "in", "mandatory_keys", ":", "assert", "key", "in", "run_output_dict", ",", "key", "+", "' not in run_output_dict'", "defa...	38.619565	0.000274
def create(obj: PersistedObject, obj_type: Type[T], errors: Dict[Type, Exception]): """ Helper method provided because we actually can't put that in the constructor, it creates a bug in Nose tests https://github.com/nose-devs/nose/issues/725 :param obj: :param errors: a dictiona...	[ "def", "create", "(", "obj", ":", "PersistedObject", ",", "obj_type", ":", "Type", "[", "T", "]", ",", "errors", ":", "Dict", "[", "Type", ",", "Exception", "]", ")", ":", "e", "=", "NoParserFoundForUnionType", "(", "'{obj} cannot be parsed as a {typ} because ...	42.722222	0.010178
async def stop_async(self): """ Stop the EventHubClient and all its Sender/Receiver clients. """ log.info("%r: Stopping %r clients", self.container_id, len(self.clients)) self.stopped = True await self._close_clients_async()	[ "async", "def", "stop_async", "(", "self", ")", ":", "log", ".", "info", "(", "\"%r: Stopping %r clients\"", ",", "self", ".", "container_id", ",", "len", "(", "self", ".", "clients", ")", ")", "self", ".", "stopped", "=", "True", "await", "self", ".", ...	38	0.011029
def acquire_fake_data(number_of_points=1000): """ This function generates some fake data and returns two channels of data in the form time_array, [channel1, channel2] """ # time array t = _n.linspace(0,10,number_of_points) return(t, [_n.cos(t)(1.0+0.2_n.random.random(number_of_points...	[ "def", "acquire_fake_data", "(", "number_of_points", "=", "1000", ")", ":", "# time array", "t", "=", "_n", ".", "linspace", "(", "0", ",", "10", ",", "number_of_points", ")", "return", "(", "t", ",", "[", "_n", ".", "cos", "(", "t", ")", "*", "(", ...	32	0.012658
def pack(self, value=None): """Pack the struct in a binary representation. Merge some fields to ensure correct packing. If no arguments are set for a particular instance, it is interpreted as abscence of VLAN information, and the pack() method will return an empty binary string...	[ "def", "pack", "(", "self", ",", "value", "=", "None", ")", ":", "if", "isinstance", "(", "value", ",", "type", "(", "self", ")", ")", ":", "return", "value", ".", "pack", "(", ")", "if", "self", ".", "pcp", "is", "None", "and", "self", ".", "c...	36	0.002353
def fill_buckets(self): ''' Get the configured backends and the intervals for any backend which supports them, and set up the update "buckets". There will be one bucket for each thing being updated at a given interval. ''' update_intervals = self.fileserver.update_interva...	[ "def", "fill_buckets", "(", "self", ")", ":", "update_intervals", "=", "self", ".", "fileserver", ".", "update_intervals", "(", ")", "self", ".", "buckets", "=", "{", "}", "for", "backend", "in", "self", ".", "fileserver", ".", "backends", "(", ")", ":",...	49.884615	0.000756
def query(self, query=None): """ If query is given, modify the URL correspondingly, return the current query otherwise. """ if query is None: return self.url.query self.url.query = query	[ "def", "query", "(", "self", ",", "query", "=", "None", ")", ":", "if", "query", "is", "None", ":", "return", "self", ".", "url", ".", "query", "self", ".", "url", ".", "query", "=", "query" ]	29.875	0.00813
def _pkl_finder_objectinfo( objectinfo, varinfo, findercmap, finderconvolve, sigclip, normto, normmingap, deredden_object=True, custom_bandpasses=None, lclistpkl=None, nbrradiusarcsec=30.0, maxnumneighbors=5, plotdpi...	[ "def", "_pkl_finder_objectinfo", "(", "objectinfo", ",", "varinfo", ",", "findercmap", ",", "finderconvolve", ",", "sigclip", ",", "normto", ",", "normmingap", ",", "deredden_object", "=", "True", ",", "custom_bandpasses", "=", "None", ",", "lclistpkl", "=", "No...	42.298893	0.002365
def resolution(self, index): """Resolution with a given index. Parameters ---------- index : int Resolution index. Global if this is the ``aionationstates.wa`` object, local if this is ``aionationstates.ga`` or ``aionationstates.sc``. Return...	[ "def", "resolution", "(", "self", ",", "index", ")", ":", "@", "api_query", "(", "'resolution'", ",", "id", "=", "str", "(", "index", ")", ")", "async", "def", "result", "(", "_", ",", "root", ")", ":", "elem", "=", "root", ".", "find", "(", "'RE...	29.111111	0.002463
def _decrypt_and_extract(self, fname): ''' This does the extraction (e.g., it decrypts the image and writes it to a new file on disk). ''' with open(fname, "r") as fp_in: encrypted_data = fp_in.read() decrypted_data = self._hilink_decrypt(encrypted_data) ...	[ "def", "_decrypt_and_extract", "(", "self", ",", "fname", ")", ":", "with", "open", "(", "fname", ",", "\"r\"", ")", "as", "fp_in", ":", "encrypted_data", "=", "fp_in", ".", "read", "(", ")", "decrypted_data", "=", "self", ".", "_hilink_decrypt", "(", "e...	40.181818	0.00885
def _sparse(self, x, y, sparse): """ Method that removes every non sparse th element. For example: if this argument was 5, This method would plot the 0th, 5th, 10th ... elements. Parameters ---------- x : list list of x values, of length j. ...	[ "def", "_sparse", "(", "self", ",", "x", ",", "y", ",", "sparse", ")", ":", "tmpX", "=", "[", "]", "tmpY", "=", "[", "]", "for", "i", "in", "range", "(", "len", "(", "x", ")", ")", ":", "if", "sparse", "==", "1", ":", "return", "x", ",", ...	24.714286	0.009736
def process_match(match, fixed_text, cur, cur_end): """Processes a single match in rules""" # Set our tools # -- Initial/default value for replace replace = True # -- Set check cursor depending on match['type'] if match['type'] == 'prefix': chk = cur - 1 else: # suffix ...	[ "def", "process_match", "(", "match", ",", "fixed_text", ",", "cur", ",", "cur_end", ")", ":", "# Set our tools", "# -- Initial/default value for replace", "replace", "=", "True", "# -- Set check cursor depending on match['type']", "if", "match", "[", "'type'", "]", "==...	38.65625	0.001971
def connect(self, keyfile=None): """Connect to the node via ssh using the paramiko library. :return: :py:class:`paramiko.SSHClient` - ssh connection or None on failure """ ssh = paramiko.SSHClient() ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy()) ...	[ "def", "connect", "(", "self", ",", "keyfile", "=", "None", ")", ":", "ssh", "=", "paramiko", ".", "SSHClient", "(", ")", "ssh", ".", "set_missing_host_key_policy", "(", "paramiko", ".", "AutoAddPolicy", "(", ")", ")", "if", "keyfile", "and", "os", ".", ...	43.814815	0.001654
def _AcquireLock(self, urn, blocking=None, blocking_lock_timeout=None, lease_time=None, blocking_sleep_interval=None): """This actually acquires the lock for a given URN.""" if urn is None: raise ValueError("URN...	[ "def", "_AcquireLock", "(", "self", ",", "urn", ",", "blocking", "=", "None", ",", "blocking_lock_timeout", "=", "None", ",", "lease_time", "=", "None", ",", "blocking_sleep_interval", "=", "None", ")", ":", "if", "urn", "is", "None", ":", "raise", "ValueE...	31.47619	0.013216
def _writeclientdoc(doc, thing, forceload=0): """Write HTML documentation to a file in the current directory. """ docmodule = pydoc.HTMLDoc.docmodule def strongarm(self, object, name=None, mod=None, ignored): result = docmodule(self, object, name, mod, ignored) # Grab all the aliases ...	[ "def", "_writeclientdoc", "(", "doc", ",", "thing", ",", "forceload", "=", "0", ")", ":", "docmodule", "=", "pydoc", ".", "HTMLDoc", ".", "docmodule", "def", "strongarm", "(", "self", ",", "object", ",", "name", "=", "None", ",", "mod", "=", "None", ...	40.793103	0.009083
def handler(self): """returns the handler""" if self._handler is None: self._handler = self.HTTPSClientAuthHandler(key=self._keyfile, cert=self._certificatefile) return self._handler	[ "def", "handler", "(", "self", ")", ":", "if", "self", ".", "_handler", "is", "None", ":", "self", ".", "_handler", "=", "self", ".", "HTTPSClientAuthHandler", "(", "key", "=", "self", ".", "_keyfile", ",", "cert", "=", "self", ".", "_certificatefile", ...	44.833333	0.010949
def get(): """Subarray list. This method will list all sub-arrays known to SDP. """ _url = get_root_url() LOG.debug('GET Sub array list') sub_array_ids = sorted(DB.get_sub_array_ids()) response = dict(sub_arrays=[]) for array_id in sub_array_ids: array_summary = dict(sub_arrar...	[ "def", "get", "(", ")", ":", "_url", "=", "get_root_url", "(", ")", "LOG", ".", "debug", "(", "'GET Sub array list'", ")", "sub_array_ids", "=", "sorted", "(", "DB", ".", "get_sub_array_ids", "(", ")", ")", "response", "=", "dict", "(", "sub_arrays", "="...	34	0.001244
def show_menu(self, status_icon, button, activate_time): """Show the tray icon menu. """ menu = self.get_widget('tray-menu') menu.popup(None, None, None, Gtk.StatusIcon.position_menu, button, activate_time)	[ "def", "show_menu", "(", "self", ",", "status_icon", ",", "button", ",", "activate_time", ")", ":", "menu", "=", "self", ".", "get_widget", "(", "'tray-menu'", ")", "menu", ".", "popup", "(", "None", ",", "None", ",", "None", ",", "Gtk", ".", "StatusIc...	46.8	0.012605
def indent(self, space=4): '''Return an indented Newick string, just like ``nw_indent`` in Newick Utilities Args: ``space`` (``int``): The number of spaces a tab should equal Returns: ``str``: An indented Newick string ''' if not isinstance(space,int): ...	[ "def", "indent", "(", "self", ",", "space", "=", "4", ")", ":", "if", "not", "isinstance", "(", "space", ",", "int", ")", ":", "raise", "TypeError", "(", "\"space must be an int\"", ")", "if", "space", "<", "0", ":", "raise", "ValueError", "(", "\"spac...	35.208333	0.017281
def evaluate_at(self, eval_at, testcases, mode=None): """ Sets the evaluation interation indices. :param list eval_at: iteration indices where an evaluation should be performed :param numpy.array testcases: testcases used for evaluation """ self.eval_at = eval_at ...	[ "def", "evaluate_at", "(", "self", ",", "eval_at", ",", "testcases", ",", "mode", "=", "None", ")", ":", "self", ".", "eval_at", "=", "eval_at", "self", ".", "log", ".", "eval_at", "=", "eval_at", "if", "mode", "is", "None", ":", "if", "self", ".", ...	37.25	0.009162
def _determine_stream_spread(self,simple=_USESIMPLE): """Determine the spread around the stream track, just sets matrices that describe the covariances""" allErrCovs= numpy.empty((self._nTrackChunks,6,6)) if self._multi is None: for ii in range(self._nTrackChunks): al...	[ "def", "_determine_stream_spread", "(", "self", ",", "simple", "=", "_USESIMPLE", ")", ":", "allErrCovs", "=", "numpy", ".", "empty", "(", "(", "self", ".", "_nTrackChunks", ",", "6", ",", "6", ")", ")", "if", "self", ".", "_multi", "is", "None", ":", ...	61.15	0.020318
def summary(self): """ Summarize the alignments for this subject. @return: A C{dict} with C{str} keys: bestScore: The C{float} best score of the matching reads. coverage: The C{float} fraction of the subject genome that is matched by at least one read. ...	[ "def", "summary", "(", "self", ")", ":", "return", "{", "'bestScore'", ":", "self", ".", "bestHsp", "(", ")", ".", "score", ".", "score", ",", "'coverage'", ":", "self", ".", "coverage", "(", ")", ",", "'hspCount'", ":", "self", ".", "hspCount", "(",...	43.26087	0.001967
def add_domain(session, organization, domain_name, is_top_domain=False): """Add a domain to the session. This function adds a new domain to the session using `domain_name` as its identifier. The new domain will also be linked to the organization object of `organization`. Values assigned to `domain...	[ "def", "add_domain", "(", "session", ",", "organization", ",", "domain_name", ",", "is_top_domain", "=", "False", ")", ":", "if", "domain_name", "is", "None", ":", "raise", "ValueError", "(", "\"'domain_name' cannot be None\"", ")", "if", "domain_name", "==", "'...	35.942857	0.000774
def combined_analysis(using): """ Combine the analysis in ES with the analysis defined in Python. The one in Python takes precedence """ python_analysis = collect_analysis(using) es_analysis = existing_analysis(using) if es_analysis == DOES_NOT_EXIST: return python_analysis # we...	[ "def", "combined_analysis", "(", "using", ")", ":", "python_analysis", "=", "collect_analysis", "(", "using", ")", "es_analysis", "=", "existing_analysis", "(", "using", ")", "if", "es_analysis", "==", "DOES_NOT_EXIST", ":", "return", "python_analysis", "# we want t...	33.727273	0.001311
def _init_ca(self): """Generate the root ca's cert and key. """ if not exists(path_join(self.ca_dir, 'ca.cnf')): with open(path_join(self.ca_dir, 'ca.cnf'), 'w') as fh: fh.write( CA_CONF_TEMPLATE % (self.get_conf_variables())) if not exist...	[ "def", "_init_ca", "(", "self", ")", ":", "if", "not", "exists", "(", "path_join", "(", "self", ".", "ca_dir", ",", "'ca.cnf'", ")", ")", ":", "with", "open", "(", "path_join", "(", "self", ".", "ca_dir", ",", "'ca.cnf'", ")", ",", "'w'", ")", "as"...	46.409091	0.001919
def put_settings(self, using=None, **kwargs): """ Change specific index level settings in real time. Any additional keyword arguments will be passed to ``Elasticsearch.indices.put_settings`` unchanged. """ return self._get_connection(using).indices.put_settings(index=sel...	[ "def", "put_settings", "(", "self", ",", "using", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_get_connection", "(", "using", ")", ".", "indices", ".", "put_settings", "(", "index", "=", "self", ".", "_name", ",", "", ""...	41.375	0.008876
def crc16_ccitt(data, crc=0): """Calculate the crc16 ccitt checksum of some data A starting crc value may be specified if desired. The input data is expected to be a sequence of bytes (string) and the output is an integer in the range (0, 0xFFFF). No packing is done to the resultant crc value. T...	[ "def", "crc16_ccitt", "(", "data", ",", "crc", "=", "0", ")", ":", "tab", "=", "CRC16_CCITT_TAB", "# minor optimization (now in locals)", "for", "byte", "in", "six", ".", "iterbytes", "(", "data", ")", ":", "crc", "=", "(", "(", "(", "crc", "<<", "8", ...	46.066667	0.001418

def _format_select(formatter, name): """Modify the query selector by applying any formatters to it. Parameters ---------- formatter : str Hyphen-delimited formatter string where formatters are applied inside-out, e.g. the formatter string SEC_TO_MICRO-INTEGER-FORMAT_UTC_USEC applie...

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28.896552

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def create_ui(self): ''' .. versionchanged:: 0.9 Update device registration in real-time while dragging video control point to new position. .. versionchanged:: 0.12 Add ``dynamic_electrode_state_shapes`` layer to show dynamic electrode actuations...

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def generate_seviri_file(seviri, platform_name): """Generate the pyspectral internal common format relative response function file for one SEVIRI """ import h5py filename = os.path.join(seviri.output_dir, "rsr_seviri_{0}.h5".format(platform_name)) sat_name = platfor...

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def create_table_index(self): """Create the QTableView that will hold the index model.""" self.table_index = QTableView() self.table_index.horizontalHeader().hide() self.table_index.setEditTriggers(QTableWidget.NoEditTriggers) self.table_index.setHorizontalScrollBarPolicy(Qt...

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def create_dataset(self, name, **kwargs): """Create an array. Parameters ---------- name : string Array name. data : array_like, optional Initial data. shape : int or tuple of ints Array shape. chunks : int or tuple of ints, op...

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def handle_device_json(self, data): """Manage the device json list.""" self._device_json.insert(0, data) self._device_json.pop()

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37.25

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def random_forest_error(forest, X_train, X_test, inbag=None, calibrate=True, memory_constrained=False, memory_limit=None): """ Calculate error bars from scikit-learn RandomForest estimators. RandomForest is a regressor or classifier object this variance c...

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def configure_doc_job( config_url, rosdistro_name, doc_build_name, repo_name, os_name, os_code_name, arch, config=None, build_file=None, index=None, dist_file=None, dist_cache=None, jenkins=None, views=None, is_disabled=False, groovy_script=None, doc_repos...

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39.505495

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def read_json(self): """ read metadata from json and set all the found properties. when overriding remember to wrap your calls in reading_ancillary_files :return: the read metadata :rtype: dict """ with reading_ancillary_files(self): if self.json_uri...

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38.217391

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def matchfieldnames(field_a, field_b): """Check match between two strings, ignoring case and spaces/underscores. Parameters ---------- a : str b : str Returns ------- bool """ normalised_a = field_a.replace(' ', '_').lower() normalised_b = field_b.replace(' ', ...

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def _get_json(self, urlpart): """ gets the result object dictionary """ url = self._url + "/%s" % urlpart params = { "f" : "json", } return self._get(url=url, param_dict=params, securityHandler=s...

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async def get_play_info(self) -> PlayInfo: """Return of the device.""" info = await self.services["avContent"]["getPlayingContentInfo"]({}) return PlayInfo.make(**info.pop())

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def process_tree_recur(self, file_names, node): """ Adds the names of all the files associated with the sub-tree rooted by `node` to `file_names` in post-order. :param file_names: A global list containing all file names associated with a tree :param node: The root of the current sub-tree...

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def coarsen_all_traces(level=2, exponential=False, axes="all", figure=None): """ This function does nearest-neighbor coarsening of the data. See spinmob.fun.coarsen_data for more information. Parameters ---------- level=2 How strongly to coarsen. exponential=False If Tr...

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def _resolve_access(self, addr, size): """ Resolves a memory access of a certain size. Returns a sequence of the bases, offsets, and sizes of the accesses required to fulfil this. """ # if we fit in one word first_offset = addr % self.width first_base = addr - fi...

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def copy_file(self, path, prefixed_path, source_storage): """ Overwritten to execute only with --upload-unhashed-files param or StaticCloudinaryStorage. Otherwise only hashed files will be uploaded during postprocessing. """ if (settings.STATICFILES_STORAGE == 'cloudinary_storage...

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def run(self): """Execute events until the queue is empty. When there is a positive delay until the first event, the delay function is called and the event is left in the queue; otherwise, the event is removed from the queue and executed (its action function is called, passing it...

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def filter(cls, parent=None, **filters): """ Gets all resources of the given type and parent (if provided) which match the given filters. This will trigger an api GET request. :param parent ResourceBase: the parent of the resource - used for nesting the request url, optional :par...

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def cli(sequencepath, report, refseq_database): """ Pass command line arguments to, and run the feature extraction functions """ main(sequencepath, report, refseq_database, num_threads=multiprocessing.cpu_count())

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def print_to_file(object): """ Function takes in object of type str, list, or dict and prints out to current working directory as pyoutput.txt :param: Object: object of type str, list, or dict :return: No return. Just prints out to file handler and save to current working directory as pyoutput.txt ...

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def send_email(subject, message, sender, recipients, image_png=None): """ Decides whether to send notification. Notification is cancelled if there are no recipients or if stdout is onto tty or if in debug mode. Dispatches on config value email.method. Default is 'smtp'. """ notifiers = { ...

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def variable(dims=1): """ Simple constructor to create single variables to create polynomials. Args: dims (int): Number of dimensions in the array. Returns: (Poly): Polynomial array with unit components in each dimension. Examples: >>> print(variabl...

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def GetRootKey(self): """Retrieves the Windows Registry root key. Returns: WinRegistryKey: Windows Registry root key. Raises: RuntimeError: if there are multiple matching mappings and the correct mapping cannot be resolved. """ root_registry_key = virtual.VirtualWinRegistryKe...

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def Then(self, f, *args, **kwargs): """ `Then(f, ...)` is equivalent to `ThenAt(1, f, ...)`. Checkout `phi.builder.Builder.ThenAt` for more information. """ return self.ThenAt(1, f, *args, **kwargs)

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def cluster_target(): "Not so applicable for this sample" start_centers = [[0.2, 0.2], [0.0, -2.0], [3.0, -3.0], [3.0, 3.0], [-3.0, 3.0], [-3.0, -3.0]] template_clustering(start_centers, FCPS_SAMPLES.SAMPLE_TARGET, criterion = splitting_type.BAYESIAN_INFORMATION_CRITERION) template_clustering(start_...

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def majority(p, a, b, c): """Majority gate.""" p.cx(c, b) p.cx(c, a) p.ccx(a, b, c)

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def fromimage(im, flatten=False, mode=None): """ Return a copy of a PIL image as a numpy array. Parameters ---------- im : PIL image Input image. flatten : bool If true, convert the output to grey-scale. mode : str, optional Mode to convert image to, e.g. ``'RGB'``. ...

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def __display_stats(self): """Display some stats regarding unify process""" self.display('unify.tmpl', processed=self.total, matched=self.matched, unified=self.total - self.matched)

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def delete(ctx, opts, owner_repo_identifier, yes): """ Delete an entitlement from a repository. - OWNER/REPO/IDENTIFIER: Specify the OWNER namespace (i.e. user or org), and the REPO name that has an entitlement identified by IDENTIFIER. All separated by a slash. Example: 'your-org/your...

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def cp(i): """ Input: { (repo_uoa) - repo UOA module_uoa - module UOA data_uoa - data UOA xcids[0] - {'repo_uoa', 'module_uoa', 'data_uoa'} - new CID or (new_repo_uoa) - new repo UOA ...

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def send(self, s): '''Sends string ``s`` to the child process, returning the number of bytes written. If a logfile is specified, a copy is written to that log. The default terminal input mode is canonical processing unless set otherwise by the child process. This allows backspac...

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def update(self, other, **kwargs): """ A dict-like update for Struct attributes. """ if other is None: return if not isinstance(other, dict): other = other.to_dict() self.__dict__.update(other, **kwargs)

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def write(self, *string): """ Writes to the output """ self._output.write(' '.join([six.text_type(s) for s in string])) return self

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def process_docstring(app, what, name, obj, options, lines): """Process the docstring for a given python object. Called when autodoc has read and processed a docstring. `lines` is a list of docstring lines that `_process_docstring` modifies in place to change what Sphinx outputs. The following set...

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def _generate_type_code_query(self, value): """Generate type-code queries. Notes: If the value of the type-code query exists in `TYPECODE_VALUE_TO_FIELD_AND_VALUE_PAIRS_MAPPING, then we query the specified field, along with the given value according to the mapping. S...

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def _index_param_value(num_samples, v, indices): """Private helper function for parameter value indexing. This determines whether a fit parameter `v` to a SearchCV.fit should be indexed along with `X` and `y`. Note that this differs from the scikit-learn version. They pass `X` and compute num_samples. ...

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def _cal_dist2center(X, center): """ Calculate the SSE to the cluster center """ dmemb2cen = scipy.spatial.distance.cdist(X, center.reshape(1,X.shape[1]), metric='seuclidean') return(np.sum(dmemb2cen))

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def footprint(config, nside=None): """ UNTESTED. Should return a boolean array representing the pixels in the footprint. """ config = Config(config) if nside is None: nside = config['coords']['nside_pixel'] elif nside < config['coords']['nside_catalog']: raise Exception('Requ...

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def delete_element_when_value_none(data_structure): """ This method remove all entries in a Python dict when its value is None. :param data_structure: Python dict (lists are supported). e.i: [{"element1": "e1", "element2": {"element2.1": "e2", "element2.2": ...

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def write(self): """Write the configuration.""" if self.dirty: with open(self._cache_path, "w") as output_file: self._config.write(output_file)

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def close(self): """Flush and close the stream. This is called automatically by the base resource on resources unless the resource is operating asynchronously; in that case, this method MUST be called in order to signal the end of the request. If not the request will simply hang...

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def decode_int(stream, signed=False): """ Decode C{int}. """ n = result = 0 b = stream.read_uchar() while b & 0x80 != 0 and n < 3: result <<= 7 result |= b & 0x7f b = stream.read_uchar() n += 1 if n < 3: result <<= 7 result |= b else: ...

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def indexbox(msg="Shall I continue?" , title=" " , choices=("Yes","No") , image=None ): """ Display a buttonbox with the specified choices. Return the index of the choice selected. """ reply = buttonbox(msg=msg, choices=choices, title=title, image=image) index = -1 for choice...

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def get(cls, **kwargs): """Retrieve an object by making a GET request to Transifex. Each value in `kwargs` that corresponds to a field defined in `self.url_fields` will be used in the URL path of the request, so that a particular entry of this model is identified and retrieved. ...

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def set_number_of_atoms( self, n, selected_sites=None ): """ Set the number of atoms for the simulation, and populate the simulation lattice. Args: n (Int): Number of atoms for this simulation. selected_sites (:obj:(List|Set|String), optional): Selects a subset of site t...

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def get(self): '''Called by the protocol consumer''' if self._current: return self._resume(self._current, False) else: return self._get(None)

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def canonical(self): """Convert URL to its canonical form.""" def full_unescape(u): uu = urllib.unquote(u) if uu == u: return uu else: return full_unescape(uu) def full_unescape_to_bytes(u): uu = urlparse.unquote_to...

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async def _on_event(self, event_): """Receive a hangouts_pb2.Event and fan out to Conversations. Args: event_: hangouts_pb2.Event instance """ conv_id = event_.conversation_id.id try: conv = await self._get_or_fetch_conversation(conv_id) except ex...

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def handle_symbol_info(self, call_id, payload): """Handler for response `SymbolInfo`.""" with catch(KeyError, lambda e: self.editor.message("unknown_symbol")): decl_pos = payload["declPos"] f = decl_pos.get("file") call_options = self.call_options[call_id] ...

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def generate_license(template, context): """ Generate a license by extracting variables from the template and replacing them with the corresponding values in the given context. """ out = StringIO() content = template.getvalue() for key in extract_vars(template): if key not in context...

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def get_op_result_name(left, right): """ Find the appropriate name to pin to an operation result. This result should always be either an Index or a Series. Parameters ---------- left : {Series, Index} right : object Returns ------- name : object Usually a string ""...

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def _FetchCustomMappings(descriptor_ls): """Find and return all custom mappings for descriptors in descriptor_ls.""" custom_mappings = [] for descriptor in descriptor_ls: if isinstance(descriptor, ExtendedEnumDescriptor): custom_mappings.extend( _FormatCustomJsonMapping('...

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def get_params(job_inis, **kw): """ Parse one or more INI-style config files. :param job_inis: List of configuration files (or list containing a single zip archive) :param kw: Optionally override some parameters :returns: A dictionary of parameters """ input_zip = No...

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def atoms(lines): """Parse atom block into atom objects Returns: dict: networkx nodes """ # Convert sdf style charge to actual charge conv_charge_table = {0: 0, 1: 3, 2: 2, 3: 1, 4: 0, 5: -1, 6: -2, 7: -3} results = {} for i, line in enumerate(lines): symbol = line[31:34].rs...

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def create_query_index( self, design_document_id=None, index_name=None, index_type='json', partitioned=False, **kwargs ): """ Creates either a JSON or a text query index in the remote database. :param str index_type: Th...

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def formdata_encode(fields): """Encode fields (a dict) as a multipart/form-data HTTP request payload. Returns a (content type, request body) pair. """ BOUNDARY = '----form-data-boundary-ZmRkNzJkMjUtMjkyMC00' out = [] for (key, value) in fields.items(): out.append('--' + BOUNDARY) ...

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def Get(self,key): """Get disk by providing mount point or ID If key is not unique and finds multiple matches only the first will be returned """ for disk in self.disks: if disk.id == key: return(disk) elif key in disk.partition_paths: return(disk)

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def wbem_request(url, data, creds, cimxml_headers=None, debug=False, x509=None, verify_callback=None, ca_certs=None, no_verification=False, timeout=None, recorders=None, conn_id=None): # pylint: disable=too-many-arguments,unused-argument # pylint: disable=too-m...

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def make_prototype_request(*args, **kwargs): """Make a prototype Request for a Matcher.""" if args and inspect.isclass(args[0]) and issubclass(args[0], Request): request_cls, arg_list = args[0], args[1:] return request_cls(*arg_list, **kwargs) if args and isinstance(args[0], Request): ...

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def get(path, value='', load_path=None): ''' Get a value for a specific augeas path CLI Example: .. code-block:: bash salt '*' augeas.get /files/etc/hosts/1/ ipaddr path The path to get the value of value The optional value to get .. versionadded:: 2016.3.0 ...

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def _check_for_api_errors(geocoding_results): """ Raise any exceptions if there were problems reported in the api response. """ status_result = geocoding_results.get("STATUS", {}) if "NO_RESULTS" in status_result.get("status", ""): return api_call_succ...

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def clear(self): """Clear the cache""" with self.lock: self.relations.clear() self.schemas.clear()

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def _resolve_assignment_parts(parts, assign_path, context): """recursive function to resolve multiple assignments""" assign_path = assign_path[:] index = assign_path.pop(0) for part in parts: assigned = None if isinstance(part, nodes.Dict): # A dictionary in an iterating cont...

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def printInvoice(self, REQUEST=None, RESPONSE=None): """Print invoice """ invoice = self.getInvoice() invoice_url = invoice.absolute_url() RESPONSE.redirect('{}/invoice_print'.format(invoice_url))

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def eparOptionFactory(master, statusBar, param, defaultParam, doScroll, fieldWidths, plugIn=None, editedCallbackObj=None, helpCallbackObj=None, mainGuiObj=None, defaultsVerb="Default", bg=None, indent=False, fl...

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def _getConfigPath(self): """ Gets the currently configured config path. :return: the path, raises ValueError if it doesn't exist. """ confHome = environ.get('VIBE_CONFIG_HOME') return confHome if confHome is not None else path.join(path.expanduser("~"), '.vibe')

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def get_subset_ids(path): """ Return a list with ids of all available subsets (based on existing csv-files). """ all = [] for path in glob.glob(os.path.join(path, '*.tsv')): file_name = os.path.split(path)[1] basename = os.path.splitext(file_name)[0] all.appe...

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def partition_items(count, bin_size): """ Given the total number of items, determine the number of items that can be added to each bin with a limit on the bin size. So if you want to partition 11 items into groups of 3, you'll want three of three and one of two. >>> partition_items(11, 3) [3, 3, 3, 2] But if...

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def _is_string(thing): """Check that **thing** is a string. The definition of the latter depends upon the Python version. :param thing: The thing to check if it's a string. :rtype: bool :returns: ``True`` if **thing** is string (or unicode in Python2). """ if (_py3k and isinstance(thing, st...

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def main(argv=None): # IGNORE:C0111 ''' Main Entry ''' by = None reqres = check_requirements() if reqres == CheckResult.Error: perr("Requirement checking failed") sys.exit(const.EFatal) try: result = const.ENoError if argv is None: argv = sys.argv else: sys.argv.extend(argv) setuphandlers() ...

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def replace_wrep(t:str) -> str: "Replace word repetitions in `t`." def _replace_wrep(m:Collection[str]) -> str: c,cc = m.groups() return f' {TK_WREP} {len(cc.split())+1} {c} ' re_wrep = re.compile(r'(\b\w+\W+)(\1{3,})') return re_wrep.sub(_replace_wrep, t)

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def double( self ): """Return a new point that is twice the old.""" if self == INFINITY: return INFINITY # X9.62 B.3: p = self.__curve.p() a = self.__curve.a() l = ( ( 3 * self.__x * self.__x + a ) * \ numbertheory.inverse_mod( 2 * self.__y, p ) ) % p x3 = ( l * l - 2 * ...

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def decrypt_ecb(self, data): """ Return an iterator that decrypts `data` using the Electronic Codebook (ECB) mode of operation. ECB mode can only operate on `data` that is a multiple of the block-size in length. Each iteration returns a block-sized :obj:`bytes` object (i.e. 8 bytes) ...

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def write_stats_file(run_output_dict): """Writes a dummy PolyChord format .stats file for tests functions for processing stats files. This is written to: base_dir/file_root.stats Also returns the data in the file as a dict for comparison. Parameters ---------- run_output_dict: dict ...

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def create(obj: PersistedObject, obj_type: Type[T], errors: Dict[Type, Exception]): """ Helper method provided because we actually can't put that in the constructor, it creates a bug in Nose tests https://github.com/nose-devs/nose/issues/725 :param obj: :param errors: a dictiona...

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async def stop_async(self): """ Stop the EventHubClient and all its Sender/Receiver clients. """ log.info("%r: Stopping %r clients", self.container_id, len(self.clients)) self.stopped = True await self._close_clients_async()

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def acquire_fake_data(number_of_points=1000): """ This function generates some fake data and returns two channels of data in the form time_array, [channel1, channel2] """ # time array t = _n.linspace(0,10,number_of_points) return(t, [_n.cos(t)*(1.0+0.2*_n.random.random(number_of_points...

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def pack(self, value=None): """Pack the struct in a binary representation. Merge some fields to ensure correct packing. If no arguments are set for a particular instance, it is interpreted as abscence of VLAN information, and the pack() method will return an empty binary string...

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def fill_buckets(self): ''' Get the configured backends and the intervals for any backend which supports them, and set up the update "buckets". There will be one bucket for each thing being updated at a given interval. ''' update_intervals = self.fileserver.update_interva...

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def query(self, query=None): """ If query is given, modify the URL correspondingly, return the current query otherwise. """ if query is None: return self.url.query self.url.query = query

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def _pkl_finder_objectinfo( objectinfo, varinfo, findercmap, finderconvolve, sigclip, normto, normmingap, deredden_object=True, custom_bandpasses=None, lclistpkl=None, nbrradiusarcsec=30.0, maxnumneighbors=5, plotdpi...

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def resolution(self, index): """Resolution with a given index. Parameters ---------- index : int Resolution index. Global if this is the ``aionationstates.wa`` object, local if this is ``aionationstates.ga`` or ``aionationstates.sc``. Return...

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def _decrypt_and_extract(self, fname): ''' This does the extraction (e.g., it decrypts the image and writes it to a new file on disk). ''' with open(fname, "r") as fp_in: encrypted_data = fp_in.read() decrypted_data = self._hilink_decrypt(encrypted_data) ...

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def _sparse(self, x, y, sparse): """ Method that removes every non sparse th element. For example: if this argument was 5, This method would plot the 0th, 5th, 10th ... elements. Parameters ---------- x : list list of x values, of length j. ...

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def process_match(match, fixed_text, cur, cur_end): """Processes a single match in rules""" # Set our tools # -- Initial/default value for replace replace = True # -- Set check cursor depending on match['type'] if match['type'] == 'prefix': chk = cur - 1 else: # suffix ...

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def connect(self, keyfile=None): """Connect to the node via ssh using the paramiko library. :return: :py:class:`paramiko.SSHClient` - ssh connection or None on failure """ ssh = paramiko.SSHClient() ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy()) ...

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def _AcquireLock(self, urn, blocking=None, blocking_lock_timeout=None, lease_time=None, blocking_sleep_interval=None): """This actually acquires the lock for a given URN.""" if urn is None: raise ValueError("URN...

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def _writeclientdoc(doc, thing, forceload=0): """Write HTML documentation to a file in the current directory. """ docmodule = pydoc.HTMLDoc.docmodule def strongarm(self, object, name=None, mod=None, *ignored): result = docmodule(self, object, name, mod, *ignored) # Grab all the aliases ...

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def handler(self): """returns the handler""" if self._handler is None: self._handler = self.HTTPSClientAuthHandler(key=self._keyfile, cert=self._certificatefile) return self._handler

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def get(): """Subarray list. This method will list all sub-arrays known to SDP. """ _url = get_root_url() LOG.debug('GET Sub array list') sub_array_ids = sorted(DB.get_sub_array_ids()) response = dict(sub_arrays=[]) for array_id in sub_array_ids: array_summary = dict(sub_arrar...

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def show_menu(self, status_icon, button, activate_time): """Show the tray icon menu. """ menu = self.get_widget('tray-menu') menu.popup(None, None, None, Gtk.StatusIcon.position_menu, button, activate_time)

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def indent(self, space=4): '''Return an indented Newick string, just like ``nw_indent`` in Newick Utilities Args: ``space`` (``int``): The number of spaces a tab should equal Returns: ``str``: An indented Newick string ''' if not isinstance(space,int): ...

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def evaluate_at(self, eval_at, testcases, mode=None): """ Sets the evaluation interation indices. :param list eval_at: iteration indices where an evaluation should be performed :param numpy.array testcases: testcases used for evaluation """ self.eval_at = eval_at ...

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def _determine_stream_spread(self,simple=_USESIMPLE): """Determine the spread around the stream track, just sets matrices that describe the covariances""" allErrCovs= numpy.empty((self._nTrackChunks,6,6)) if self._multi is None: for ii in range(self._nTrackChunks): al...

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def summary(self): """ Summarize the alignments for this subject. @return: A C{dict} with C{str} keys: bestScore: The C{float} best score of the matching reads. coverage: The C{float} fraction of the subject genome that is matched by at least one read. ...

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def add_domain(session, organization, domain_name, is_top_domain=False): """Add a domain to the session. This function adds a new domain to the session using `domain_name` as its identifier. The new domain will also be linked to the organization object of `organization`. Values assigned to `domain...

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def combined_analysis(using): """ Combine the analysis in ES with the analysis defined in Python. The one in Python takes precedence """ python_analysis = collect_analysis(using) es_analysis = existing_analysis(using) if es_analysis == DOES_NOT_EXIST: return python_analysis # we...

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def _init_ca(self): """Generate the root ca's cert and key. """ if not exists(path_join(self.ca_dir, 'ca.cnf')): with open(path_join(self.ca_dir, 'ca.cnf'), 'w') as fh: fh.write( CA_CONF_TEMPLATE % (self.get_conf_variables())) if not exist...

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def put_settings(self, using=None, **kwargs): """ Change specific index level settings in real time. Any additional keyword arguments will be passed to ``Elasticsearch.indices.put_settings`` unchanged. """ return self._get_connection(using).indices.put_settings(index=sel...

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def crc16_ccitt(data, crc=0): """Calculate the crc16 ccitt checksum of some data A starting crc value may be specified if desired. The input data is expected to be a sequence of bytes (string) and the output is an integer in the range (0, 0xFFFF). No packing is done to the resultant crc value. T...

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