| | --- |
| | |
| | task_categories: |
| | - image-classification |
| | - image-segmentation |
| | - feature-extraction |
| | - zero-shot-classification |
| | - fill-mask |
| | size_categories: |
| | - 10K<n<100K |
| | tags: |
| | - biology |
| | - cells |
| | - radiation |
| | - microscopy |
| | - GeneLab |
| | --- |
| | |
| | # Dataset Card for Dataset GeneLab_BPS_BenchmarkData |
| |
|
| | ## Dataset Details |
| |
|
| | This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/ |
| | |
| | Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks. |
| | |
| | ### Dataset Description |
| | |
| | - **Curated by:** Frank Soboczenski |
| | - **Funded by [optional]:** [More Information Needed] |
| | - **Shared by [optional]:** [More Information Needed] |
| | - **Language(s) (NLP):** [More Information Needed] |
| | - **License:** There are no restrictions on the use of this data. |
| | |
| | ## Further Documentation |
| | |
| | https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub |
| |
|
| | ### Update Frequency |
| |
|
| | New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available. |
| |
|
| | ## Dataset Structure |
| |
|
| | GeneLab_BPS_BenchmarkData/<br> |
| | ├── README.md<br> |
| | └── data/<br> |
| | ├── High_Energy_Ion_Fe_Nuclei/<br> |
| | │ └── .tif<br> |
| | │ └── ...<br> |
| | └── XRay_irradiated_Nucleiation/<br> |
| | └── .tif<br> |
| | └── ...<br> |
| | |
| | ## How to Cite |
| |
|
| | Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData |
| |
|
| | ## Publications |
| |
|
| | - Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes |
| | - NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative |
| | |
| | ## Dataset Card Authors [optional] |
| |
|
| | Lauren Sanders (lauren.m.sanders@nasa.gov) |
| |
|
| | ## Dataset Card Contact |
| |
|
| | Frank Soboczenski (Frank.Soboczenski@york.ac.uk) |
