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train | FaceOffComparison.by_zone | Returns the faceoff win/total breakdown by zone for home and away as
.. code:: python
{ 'home/away': {
'off/def/neut/all': { 'won': won, 'total': total }
}
}
:returns: dict | nhlscrapi/games/faceoffcomp.py | def by_zone(self):
"""
Returns the faceoff win/total breakdown by zone for home and away as
.. code:: python
{ 'home/away': {
'off/def/neut/all': { 'won': won, 'total': total }
}
}
:returns: dict
... | def by_zone(self):
"""
Returns the faceoff win/total breakdown by zone for home and away as
.. code:: python
{ 'home/away': {
'off/def/neut/all': { 'won': won, 'total': total }
}
}
:returns: dict
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train | FaceOffComparison.fo_pct | Get the by team overall face-off win %.
:returns: dict, ``{ 'home': %, 'away': % }`` | nhlscrapi/games/faceoffcomp.py | def fo_pct(self):
"""
Get the by team overall face-off win %.
:returns: dict, ``{ 'home': %, 'away': % }``
"""
tots = self.team_totals
return {
t: tots[t]['won']/(1.0*tots[t]['total']) if tots[t]['total'] else 0.0
for t in [ 'home', 'away'... | def fo_pct(self):
"""
Get the by team overall face-off win %.
:returns: dict, ``{ 'home': %, 'away': % }``
"""
tots = self.team_totals
return {
t: tots[t]['won']/(1.0*tots[t]['total']) if tots[t]['total'] else 0.0
for t in [ 'home', 'away'... | [
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train | FaceOffComparison.fo_pct_by_zone | Get the by team face-off win % by zone. Format is
:returns: dict ``{ 'home/away': { 'off/def/neut': % } }`` | nhlscrapi/games/faceoffcomp.py | def fo_pct_by_zone(self):
"""
Get the by team face-off win % by zone. Format is
:returns: dict ``{ 'home/away': { 'off/def/neut': % } }``
"""
bz = self.by_zone
return {
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"""
Get the by team face-off win % by zone. Format is
:returns: dict ``{ 'home/away': { 'off/def/neut': % } }``
"""
bz = self.by_zone
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train | TeamIncrementor.update | Update the accumulator with the current play
:returns: new tally
:rtype: dict, ``{ 'period': per, 'time': clock, 'team': cumul, 'play': play }`` | nhlscrapi/games/cumstats.py | def update(self, play):
"""
Update the accumulator with the current play
:returns: new tally
:rtype: dict, ``{ 'period': per, 'time': clock, 'team': cumul, 'play': play }``
"""
new_tally = { }
#if any(isinstance(play.event, te) for te in self.trigger_even... | def update(self, play):
"""
Update the accumulator with the current play
:returns: new tally
:rtype: dict, ``{ 'period': per, 'time': clock, 'team': cumul, 'play': play }``
"""
new_tally = { }
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train | Corsi.share | The Cori-share (% of shot attempts) for each team
:returns: dict, ``{ 'home_name': %, 'away_name': % }`` | nhlscrapi/games/cumstats.py | def share(self):
"""
The Cori-share (% of shot attempts) for each team
:returns: dict, ``{ 'home_name': %, 'away_name': % }``
"""
tot = sum(self.total.values())
return { k: v/float(tot) for k,v in self.total.items() } | def share(self):
"""
The Cori-share (% of shot attempts) for each team
:returns: dict, ``{ 'home_name': %, 'away_name': % }``
"""
tot = sum(self.total.values())
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train | PlayByPlay.compute_stats | Compute the stats defined in ``self.cum_stats``.
:returns: collection of all computed :py:class:`.AccumulateStats`
:rtype: dict | nhlscrapi/games/playbyplay.py | def compute_stats(self):
"""
Compute the stats defined in ``self.cum_stats``.
:returns: collection of all computed :py:class:`.AccumulateStats`
:rtype: dict
"""
if not self.__have_stats:
if self.init_cs_teams and self.cum_stats:
self._... | def compute_stats(self):
"""
Compute the stats defined in ``self.cum_stats``.
:returns: collection of all computed :py:class:`.AccumulateStats`
:rtype: dict
"""
if not self.__have_stats:
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"_rep_read... | 2273683497ff27b0e92c8d1557ff0ce962dbf43b |
train | NHLCn.__html_rep | Retrieves the nhl html reports for the specified game and report code | nhlscrapi/scrapr/nhlreq.py | def __html_rep(self, game_key, rep_code):
"""Retrieves the nhl html reports for the specified game and report code"""
seas, gt, num = game_key.to_tuple()
url = [ self.__domain, "scores/htmlreports/", str(seas-1), str(seas),
"/", rep_code, "0", str(gt), ("%04i" % (num)), ".HTM" ]
... | def __html_rep(self, game_key, rep_code):
"""Retrieves the nhl html reports for the specified game and report code"""
seas, gt, num = game_key.to_tuple()
url = [ self.__domain, "scores/htmlreports/", str(seas-1), str(seas),
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train | to_char | Transforms the ASCII control character symbols to their real char.
Note: If the token is not an ASCII control character symbol, just
return the token.
Keyword arguments:
token -- the token to transform | pyisemail/validators/parser_validator.py | def to_char(token):
"""Transforms the ASCII control character symbols to their real char.
Note: If the token is not an ASCII control character symbol, just
return the token.
Keyword arguments:
token -- the token to transform
"""
if ord(token) in _range(9216, 9229 + 1):
token = _un... | def to_char(token):
"""Transforms the ASCII control character symbols to their real char.
Note: If the token is not an ASCII control character symbol, just
return the token.
Keyword arguments:
token -- the token to transform
"""
if ord(token) in _range(9216, 9229 + 1):
token = _un... | [
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train | ParserValidator.is_email | Check that an address address conforms to RFCs 5321, 5322 and others.
More specifically, see the follow RFCs:
* http://tools.ietf.org/html/rfc5321
* http://tools.ietf.org/html/rfc5322
* http://tools.ietf.org/html/rfc4291#section-2.2
* http://tools.ietf.org/html/r... | pyisemail/validators/parser_validator.py | def is_email(self, address, diagnose=False):
"""Check that an address address conforms to RFCs 5321, 5322 and others.
More specifically, see the follow RFCs:
* http://tools.ietf.org/html/rfc5321
* http://tools.ietf.org/html/rfc5322
* http://tools.ietf.org/html/rfc429... | def is_email(self, address, diagnose=False):
"""Check that an address address conforms to RFCs 5321, 5322 and others.
More specifically, see the follow RFCs:
* http://tools.ietf.org/html/rfc5321
* http://tools.ietf.org/html/rfc5322
* http://tools.ietf.org/html/rfc429... | [
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train | load_freesurfer_label | Get source node list for a specified freesurfer label.
Inputs
-------
annot_input : freesurfer annotation label file
label_name : freesurfer label name
cortex : not used | surfdist/load.py | def load_freesurfer_label(annot_input, label_name, cortex=None):
"""
Get source node list for a specified freesurfer label.
Inputs
-------
annot_input : freesurfer annotation label file
label_name : freesurfer label name
cortex : not used
"""
if cortex is not None:
print("W... | def load_freesurfer_label(annot_input, label_name, cortex=None):
"""
Get source node list for a specified freesurfer label.
Inputs
-------
annot_input : freesurfer annotation label file
label_name : freesurfer label name
cortex : not used
"""
if cortex is not None:
print("W... | [
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train | get_freesurfer_label | Print freesurfer label names. | surfdist/load.py | def get_freesurfer_label(annot_input, verbose = True):
"""
Print freesurfer label names.
"""
labels, color_table, names = nib.freesurfer.read_annot(annot_input)
if verbose:
print(names)
return names | def get_freesurfer_label(annot_input, verbose = True):
"""
Print freesurfer label names.
"""
labels, color_table, names = nib.freesurfer.read_annot(annot_input)
if verbose:
print(names)
return names | [
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train | viz | Visualize results on cortical surface using matplotlib.
Inputs
-------
coords : numpy array of shape (n_nodes,3), each row specifying the x,y,z
coordinates of one node of surface mesh
faces : numpy array of shape (n_faces, 3), each row specifying the indices
of the three nodes b... | surfdist/viz.py | def viz(coords, faces, stat_map=None,
elev=0, azim=0, cmap='coolwarm',
threshold=None, alpha='auto',
bg_map=None, bg_on_stat=False,
figsize=None,
**kwargs):
''' Visualize results on cortical surface using matplotlib.
Inputs
-------
coords : numpy array of shape ... | def viz(coords, faces, stat_map=None,
elev=0, azim=0, cmap='coolwarm',
threshold=None, alpha='auto',
bg_map=None, bg_on_stat=False,
figsize=None,
**kwargs):
''' Visualize results on cortical surface using matplotlib.
Inputs
-------
coords : numpy array of shape ... | [
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train | surf_keep_cortex | Remove medial wall from cortical surface to ensure that shortest paths are only calculated through the cortex.
Inputs
-------
surf : Tuple containing two numpy arrays of shape (n_nodes,3). Each node of the first array specifies the x, y, z
coordinates one node of the surface mesh. Each node of t... | surfdist/utils.py | def surf_keep_cortex(surf, cortex):
"""
Remove medial wall from cortical surface to ensure that shortest paths are only calculated through the cortex.
Inputs
-------
surf : Tuple containing two numpy arrays of shape (n_nodes,3). Each node of the first array specifies the x, y, z
coordina... | def surf_keep_cortex(surf, cortex):
"""
Remove medial wall from cortical surface to ensure that shortest paths are only calculated through the cortex.
Inputs
-------
surf : Tuple containing two numpy arrays of shape (n_nodes,3). Each node of the first array specifies the x, y, z
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train | triangles_keep_cortex | Remove triangles with nodes not contained in the cortex label array | surfdist/utils.py | def triangles_keep_cortex(triangles, cortex):
"""
Remove triangles with nodes not contained in the cortex label array
"""
# for or each face/triangle keep only those that only contain nodes within the list of cortex nodes
input_shape = triangles.shape
triangle_is_in_cortex = np.all(np.reshape(n... | def triangles_keep_cortex(triangles, cortex):
"""
Remove triangles with nodes not contained in the cortex label array
"""
# for or each face/triangle keep only those that only contain nodes within the list of cortex nodes
input_shape = triangles.shape
triangle_is_in_cortex = np.all(np.reshape(n... | [
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train | translate_src | Convert source nodes to new surface (without medial wall). | surfdist/utils.py | def translate_src(src, cortex):
"""
Convert source nodes to new surface (without medial wall).
"""
src_new = np.array(np.where(np.in1d(cortex, src))[0], dtype=np.int32)
return src_new | def translate_src(src, cortex):
"""
Convert source nodes to new surface (without medial wall).
"""
src_new = np.array(np.where(np.in1d(cortex, src))[0], dtype=np.int32)
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train | recort | Return data values to space of full cortex (including medial wall), with medial wall equal to zero. | surfdist/utils.py | def recort(input_data, surf, cortex):
"""
Return data values to space of full cortex (including medial wall), with medial wall equal to zero.
"""
data = np.zeros(len(surf[0]))
data[cortex] = input_data
return data | def recort(input_data, surf, cortex):
"""
Return data values to space of full cortex (including medial wall), with medial wall equal to zero.
"""
data = np.zeros(len(surf[0]))
data[cortex] = input_data
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train | find_node_match | Thanks to juhuntenburg.
Functions taken from https://github.com/juhuntenburg/brainsurfacescripts
Finds those points on the complex mesh that correspond best to the
simple mesh while forcing a one-to-one mapping. | surfdist/utils.py | def find_node_match(simple_vertices, complex_vertices):
"""
Thanks to juhuntenburg.
Functions taken from https://github.com/juhuntenburg/brainsurfacescripts
Finds those points on the complex mesh that correspond best to the
simple mesh while forcing a one-to-one mapping.
"""
import scipy.s... | def find_node_match(simple_vertices, complex_vertices):
"""
Thanks to juhuntenburg.
Functions taken from https://github.com/juhuntenburg/brainsurfacescripts
Finds those points on the complex mesh that correspond best to the
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train | EventSummRep.parse | Retreive and parse Event Summary report for the given :py:class:`nhlscrapi.games.game.GameKey`
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/eventsummrep.py | def parse(self):
"""
Retreive and parse Event Summary report for the given :py:class:`nhlscrapi.games.game.GameKey`
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... | def parse(self):
"""
Retreive and parse Event Summary report for the given :py:class:`nhlscrapi.games.game.GameKey`
:returns: ``self`` on success, ``None`` otherwise
"""
try:
return super(EventSummRep, self).parse() \
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train | EventSummRep.parse_home_shots | Parse shot info for home team.
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/eventsummrep.py | def parse_home_shots(self):
"""
Parse shot info for home team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_shot_tables()
self.shots['home'] = self.__parse_shot_tables(
self.__home_top,
self... | def parse_home_shots(self):
"""
Parse shot info for home team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_shot_tables()
self.shots['home'] = self.__parse_shot_tables(
self.__home_top,
self... | [
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train | EventSummRep.parse_away_shots | Parse shot info for away team.
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/eventsummrep.py | def parse_away_shots(self):
"""
Parse shot info for away team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_shot_tables()
self.shots['away'] = self.__parse_shot_tables(
self.__aw_top,
self._... | def parse_away_shots(self):
"""
Parse shot info for away team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_shot_tables()
self.shots['away'] = self.__parse_shot_tables(
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self._... | [
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train | EventSummRep.parse_home_fo | Parse face-off info for home team.
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/eventsummrep.py | def parse_home_fo(self):
"""
Parse face-off info for home team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_fo_tables()
self.face_offs['home'] = self.__parse_fo_table(self.__home_fo)
return self
except... | def parse_home_fo(self):
"""
Parse face-off info for home team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_fo_tables()
self.face_offs['home'] = self.__parse_fo_table(self.__home_fo)
return self
except... | [
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train | EventSummRep.parse_away_fo | Parse face-off info for away team.
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/eventsummrep.py | def parse_away_fo(self):
"""
Parse face-off info for away team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_fo_tables()
self.face_offs['away'] = self.__parse_fo_table(self.__away_fo)
return self
except... | def parse_away_fo(self):
"""
Parse face-off info for away team.
:returns: ``self`` on success, ``None`` otherwise
"""
try:
self.__set_fo_tables()
self.face_offs['away'] = self.__parse_fo_table(self.__away_fo)
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except... | [
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train | dist_calc | Calculate exact geodesic distance along cortical surface from set of source nodes.
"dist_type" specifies whether to calculate "min", "mean", "median", or "max" distance values
from a region-of-interest. If running only on single node, defaults to "min". | surfdist/surfdist.py | def dist_calc(surf, cortex, source_nodes):
"""
Calculate exact geodesic distance along cortical surface from set of source nodes.
"dist_type" specifies whether to calculate "min", "mean", "median", or "max" distance values
from a region-of-interest. If running only on single node, defaults to "min".
... | def dist_calc(surf, cortex, source_nodes):
"""
Calculate exact geodesic distance along cortical surface from set of source nodes.
"dist_type" specifies whether to calculate "min", "mean", "median", or "max" distance values
from a region-of-interest. If running only on single node, defaults to "min".
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train | zone_calc | Calculate closest nodes to each source node using exact geodesic distance along the cortical surface. | surfdist/surfdist.py | def zone_calc(surf, cortex, src):
"""
Calculate closest nodes to each source node using exact geodesic distance along the cortical surface.
"""
cortex_vertices, cortex_triangles = surf_keep_cortex(surf, cortex)
dist_vals = np.zeros((len(source_nodes), len(cortex_vertices)))
for x in range(len... | def zone_calc(surf, cortex, src):
"""
Calculate closest nodes to each source node using exact geodesic distance along the cortical surface.
"""
cortex_vertices, cortex_triangles = surf_keep_cortex(surf, cortex)
dist_vals = np.zeros((len(source_nodes), len(cortex_vertices)))
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train | dist_calc_matrix | Calculate exact geodesic distance along cortical surface from set of source nodes.
"labels" specifies the freesurfer label file to use. All values will be used other than those
specified in "exceptions" (default: 'Unknown' and 'Medial_Wall').
returns:
dist_mat: symmetrical nxn matrix of minimum dista... | surfdist/surfdist.py | def dist_calc_matrix(surf, cortex, labels, exceptions = ['Unknown', 'Medial_wall'], verbose = True):
"""
Calculate exact geodesic distance along cortical surface from set of source nodes.
"labels" specifies the freesurfer label file to use. All values will be used other than those
specified in "exceptio... | def dist_calc_matrix(surf, cortex, labels, exceptions = ['Unknown', 'Medial_wall'], verbose = True):
"""
Calculate exact geodesic distance along cortical surface from set of source nodes.
"labels" specifies the freesurfer label file to use. All values will be used other than those
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train | FaceOffRep.parse | Retreive and parse Play by Play data for the given nhlscrapi.GameKey
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/faceoffrep.py | def parse(self):
"""
Retreive and parse Play by Play data for the given nhlscrapi.GameKey
:returns: ``self`` on success, ``None`` otherwise
"""
try:
return (
super(FaceOffRep, self).parse()
and self.parse_home_face_offs()
... | def parse(self):
"""
Retreive and parse Play by Play data for the given nhlscrapi.GameKey
:returns: ``self`` on success, ``None`` otherwise
"""
try:
return (
super(FaceOffRep, self).parse()
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train | FaceOffRep.parse_home_face_offs | Parse only the home faceoffs
:returns: ``self`` on success, ``None`` otherwise | nhlscrapi/scrapr/faceoffrep.py | def parse_home_face_offs(self):
"""
Parse only the home faceoffs
:returns: ``self`` on success, ``None`` otherwise
"""
self.__set_team_docs()
self.face_offs['home'] = FaceOffRep.__read_team_doc(self.__home_doc)
return self | def parse_home_face_offs(self):
"""
Parse only the home faceoffs
:returns: ``self`` on success, ``None`` otherwise
"""
self.__set_team_docs()
self.face_offs['home'] = FaceOffRep.__read_team_doc(self.__home_doc)
return self | [
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train | FaceOffRep.parse_away_face_offs | Parse only the away faceoffs
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"""
Parse only the away faceoffs
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self.face_offs['away'] = FaceOffRep.__read_team_doc(self.__vis_doc)
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Parse only the away faceoffs
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self.face_offs['away'] = FaceOffRep.__read_team_doc(self.__vis_doc)
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train | load_module | Loads a module by filename | zopkio/utils.py | def load_module(filename):
"""
Loads a module by filename
"""
basename = os.path.basename(filename)
path = os.path.dirname(filename)
sys.path.append(path)
# TODO(tlan) need to figure out how to handle errors thrown here
return __import__(os.path.splitext(basename)[0]) | def load_module(filename):
"""
Loads a module by filename
"""
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path = os.path.dirname(filename)
sys.path.append(path)
# TODO(tlan) need to figure out how to handle errors thrown here
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train | make_machine_mapping | Convert the machine list argument from a list of names into a mapping of logical names to
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Convert the machine list argument from a list of names into a mapping of logical names to
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Convert the machine list argument from a list of names into a mapping of logical names to
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train | parse_config_list | Parse a list of configuration properties separated by '=' | zopkio/utils.py | def parse_config_list(config_list):
"""
Parse a list of configuration properties separated by '='
"""
if config_list is None:
return {}
else:
mapping = {}
for pair in config_list:
if (constants.CONFIG_SEPARATOR not in pair) or (pair.count(constants.CONFIG_SEPARATOR) != 1):
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"""
Parse a list of configuration properties separated by '='
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mapping = {}
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if (constants.CONFIG_SEPARATOR not in pair) or (pair.count(constants.CONFIG_SEPARATOR) != 1):
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train | parse_config_file | Parse a configuration file. Currently only supports .json, .py and properties separated by '='
:param config_file_path:
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:return: a dict of the configuration properties
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extension = os.path.splitext(config_file_path)[1]
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train | exec_with_env | :param ssh:
:param command:
:param msg:
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:param synch:
:return: | zopkio/remote_host_helper.py | def exec_with_env(ssh, command, msg='', env={}, **kwargs):
"""
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:param command:
:param msg:
:param env:
:param synch:
:return:
"""
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"""
:param ssh:
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:param msg:
:param env:
:param synch:
:return:
"""
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train | better_exec_command | Uses paramiko to execute a command but handles failure by raising a ParamikoError if the command fails.
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train | log_output | logs the output from a remote command
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logs the output from a remote command
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train | copy_dir | Recursively copy a directory flattens the output into a single directory but
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:param ftp:
:param filename:
:param outputdir:
:param prefix:
:param pattern: a regex pattern for files to match (by default matches everything)
:return: | zopkio/remote_host_helper.py | def copy_dir(ftp, filename, outputdir, prefix, pattern=''):
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:param filename:
:param outputdir:
:param prefix:
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Recursively copy a directory flattens the output into a single directory but
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train | open_remote_file | :param hostname:
:param filename:
:return: | zopkio/remote_host_helper.py | def open_remote_file(hostname, filename, mode='r', bufsize=-1, username=None, password=None):
"""
:param hostname:
:param filename:
:return:
"""
with get_ssh_client(hostname, username=username, password=password) as ssh:
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try:
sftp = ssh.open_sftp()
f... | def open_remote_file(hostname, filename, mode='r', bufsize=-1, username=None, password=None):
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:param hostname:
:param filename:
:return:
"""
with get_ssh_client(hostname, username=username, password=password) as ssh:
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f = None
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train | Deployer.deploy | Deploys the service to the host. This should at least perform the same actions as install and start
but may perform additional tasks as needed.
:Parameter unique_id: the name of the process
:Parameter configs: a mao of configs the deployer may use to modify the deployment | zopkio/deployer.py | def deploy(self, unique_id, configs=None):
"""Deploys the service to the host. This should at least perform the same actions as install and start
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:Parameter unique_id: the name of the process
:Parameter configs: a mao of configs the deployer may use to modif... | def deploy(self, unique_id, configs=None):
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train | Deployer.undeploy | Undeploys the service. This should at least perform the same actions as stop and uninstall
but may perform additional tasks as needed.
:Parameter unique_id: the name of the process
:Parameter configs: a map of configs the deployer may use | zopkio/deployer.py | def undeploy(self, unique_id, configs=None):
"""Undeploys the service. This should at least perform the same actions as stop and uninstall
but may perform additional tasks as needed.
:Parameter unique_id: the name of the process
:Parameter configs: a map of configs the deployer may use
"""
sel... | def undeploy(self, unique_id, configs=None):
"""Undeploys the service. This should at least perform the same actions as stop and uninstall
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:Parameter unique_id: the name of the process
:Parameter configs: a map of configs the deployer may use
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train | Deployer.soft_bounce | Performs a soft bounce (stop and start) for the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def soft_bounce(self, unique_id, configs=None):
""" Performs a soft bounce (stop and start) for the specified process
:Parameter unique_id: the name of the process
"""
self.stop(unique_id, configs)
self.start(unique_id, configs) | def soft_bounce(self, unique_id, configs=None):
""" Performs a soft bounce (stop and start) for the specified process
:Parameter unique_id: the name of the process
"""
self.stop(unique_id, configs)
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train | Deployer.hard_bounce | Performs a hard bounce (kill and start) for the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def hard_bounce(self, unique_id, configs=None):
""" Performs a hard bounce (kill and start) for the specified process
:Parameter unique_id: the name of the process
"""
self.kill(unique_id, configs)
self.start(unique_id, configs) | def hard_bounce(self, unique_id, configs=None):
""" Performs a hard bounce (kill and start) for the specified process
:Parameter unique_id: the name of the process
"""
self.kill(unique_id, configs)
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train | Deployer.sleep | Pauses the process for the specified delay and then resumes it
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:Parameter delay: delay time in seconds | zopkio/deployer.py | def sleep(self, unique_id, delay, configs=None):
""" Pauses the process for the specified delay and then resumes it
:Parameter unique_id: the name of the process
:Parameter delay: delay time in seconds
"""
self.pause(unique_id, configs)
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""" Pauses the process for the specified delay and then resumes it
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:Parameter delay: delay time in seconds
"""
self.pause(unique_id, configs)
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train | Deployer.pause | Issues a sigstop for the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def pause(self, unique_id, configs=None):
""" Issues a sigstop for the specified process
:Parameter unique_id: the name of the process
"""
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hostname = self.p... | def pause(self, unique_id, configs=None):
""" Issues a sigstop for the specified process
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train | Deployer._send_signal | Issues a signal for the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def _send_signal(self, unique_id, signalno, configs):
""" Issues a signal for the specified process
:Parameter unique_id: the name of the process
"""
pids = self.get_pid(unique_id, configs)
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"""
pids = self.get_pid(unique_id, configs)
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train | Deployer.resume | Issues a sigcont for the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def resume(self, unique_id, configs=None):
""" Issues a sigcont for the specified process
:Parameter unique_id: the name of the process
"""
self._send_signal(unique_id, signal.SIGCONT,configs) | def resume(self, unique_id, configs=None):
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:Parameter unique_id: the name of the process
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train | Deployer.kill | Issues a kill -9 to the specified process
calls the deployers get_pid function for the process. If no pid_file/pid_keyword is specified
a generic grep of ps aux command is executed on remote machine based on process parameters
which may not be reliable if more process are running with similar name
:Par... | zopkio/deployer.py | def kill(self, unique_id, configs=None):
""" Issues a kill -9 to the specified process
calls the deployers get_pid function for the process. If no pid_file/pid_keyword is specified
a generic grep of ps aux command is executed on remote machine based on process parameters
which may not be reliable if mor... | def kill(self, unique_id, configs=None):
""" Issues a kill -9 to the specified process
calls the deployers get_pid function for the process. If no pid_file/pid_keyword is specified
a generic grep of ps aux command is executed on remote machine based on process parameters
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train | Deployer.terminate | Issues a kill -15 to the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def terminate(self, unique_id, configs=None):
""" Issues a kill -15 to the specified process
:Parameter unique_id: the name of the process
"""
self._send_signal(unique_id, signal.SIGTERM, configs) | def terminate(self, unique_id, configs=None):
""" Issues a kill -15 to the specified process
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train | Deployer.hangup | Issue a signal to hangup the specified process
:Parameter unique_id: the name of the process | zopkio/deployer.py | def hangup(self, unique_id, configs=None):
"""
Issue a signal to hangup the specified process
:Parameter unique_id: the name of the process
"""
self._send_signal(unique_id, signal.SIGHUP, configs) | def hangup(self, unique_id, configs=None):
"""
Issue a signal to hangup the specified process
:Parameter unique_id: the name of the process
"""
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train | Deployer.get_logs | deprecated name for fetch_logs | zopkio/deployer.py | def get_logs(self, unique_id, logs, directory, pattern=constants.FILTER_NAME_ALLOW_NONE):
"""deprecated name for fetch_logs"""
self.fetch_logs(unique_id, logs, directory, pattern) | def get_logs(self, unique_id, logs, directory, pattern=constants.FILTER_NAME_ALLOW_NONE):
"""deprecated name for fetch_logs"""
self.fetch_logs(unique_id, logs, directory, pattern) | [
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train | Deployer.fetch_logs | Copies logs from the remote host that the process is running on to the provided directory
:Parameter unique_id the unique_id of the process in question
:Parameter logs a list of logs given by absolute path from the remote host
:Parameter directory the local directory to store the copied logs
:Parameter... | zopkio/deployer.py | def fetch_logs(self, unique_id, logs, directory, pattern=constants.FILTER_NAME_ALLOW_NONE):
""" Copies logs from the remote host that the process is running on to the provided directory
:Parameter unique_id the unique_id of the process in question
:Parameter logs a list of logs given by absolute path from ... | def fetch_logs(self, unique_id, logs, directory, pattern=constants.FILTER_NAME_ALLOW_NONE):
""" Copies logs from the remote host that the process is running on to the provided directory
:Parameter unique_id the unique_id of the process in question
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train | Deployer.fetch_logs_from_host | Static method Copies logs from specified host on the specified install path
:Parameter hostname the remote host from where we need to fetch the logs
:Parameter install_path path where the app is installed
:Parameter prefix prefix used to copy logs. Generall the unique_id of process
:Parameter logs a li... | zopkio/deployer.py | def fetch_logs_from_host(hostname, install_path, prefix, logs, directory, pattern):
""" Static method Copies logs from specified host on the specified install path
:Parameter hostname the remote host from where we need to fetch the logs
:Parameter install_path path where the app is installed
:Parameter... | def fetch_logs_from_host(hostname, install_path, prefix, logs, directory, pattern):
""" Static method Copies logs from specified host on the specified install path
:Parameter hostname the remote host from where we need to fetch the logs
:Parameter install_path path where the app is installed
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train | Reporter.generate | Generates the report | zopkio/junit_reporter.py | def generate(self):
"""
Generates the report
"""
self._setup()
for config_name in self.report_info.config_to_test_names_map.keys():
config_dir = os.path.join(self.report_info.resource_dir, config_name)
utils.makedirs(config_dir)
testsuite = self._generate_junit_xml(config_name)
... | def generate(self):
"""
Generates the report
"""
self._setup()
for config_name in self.report_info.config_to_test_names_map.keys():
config_dir = os.path.join(self.report_info.resource_dir, config_name)
utils.makedirs(config_dir)
testsuite = self._generate_junit_xml(config_name)
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train | SSHDeployer.install | Copies the executable to the remote machine under install path. Inspects the configs for the possible keys
'hostname': the host to install on
'install_path': the location on the remote host
'executable': the executable to copy
'no_copy': if this config is passed in and true then this method will not cop... | zopkio/adhoc_deployer.py | def install(self, unique_id, configs=None):
"""
Copies the executable to the remote machine under install path. Inspects the configs for the possible keys
'hostname': the host to install on
'install_path': the location on the remote host
'executable': the executable to copy
'no_copy': if this co... | def install(self, unique_id, configs=None):
"""
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'install_path': the location on the remote host
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train | SSHDeployer.start | Start the service. If `unique_id` has already been installed the deployer will start the service on that host.
Otherwise this will call install with the configs. Within the context of this function, only four configs are
considered
'start_command': the command to run (if provided will replace the default)
... | zopkio/adhoc_deployer.py | def start(self, unique_id, configs=None):
"""
Start the service. If `unique_id` has already been installed the deployer will start the service on that host.
Otherwise this will call install with the configs. Within the context of this function, only four configs are
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'start_command': the ... | def start(self, unique_id, configs=None):
"""
Start the service. If `unique_id` has already been installed the deployer will start the service on that host.
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train | SSHDeployer.stop | Stop the service. If the deployer has not started a service with`unique_id` the deployer will raise an Exception
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'terminate_only': if this config is passed in then this method is the same as terminate(unique_id) (this is also the
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"""Stop the service. If the deployer has not started a service with`unique_id` the deployer will raise an Exception
There are two configs that will be considered:
'terminate_only': if this config is passed in then this method is the same as terminate(unique_id) (thi... | def stop(self, unique_id, configs=None):
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train | SSHDeployer.uninstall | uninstall the service. If the deployer has not started a service with
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"""uninstall the service. If the deployer has not started a service with
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'additional_directories': a list of directories to remove in addition to those provided in the constructor plus
... | def uninstall(self, unique_id, configs=None):
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train | SSHDeployer.get_pid | Gets the pid of the process with `unique_id`. If the deployer does not know of a process
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train | SSHDeployer.get_host | Gets the host of the process with `unique_id`. If the deployer does not know of a process
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train | SSHDeployer.kill_all_process | Terminates all the running processes. By default it is set to false.
Users can set to true in config once the method to get_pid is done deterministically
either using pid_file or an accurate keyword | zopkio/adhoc_deployer.py | def kill_all_process(self):
""" Terminates all the running processes. By default it is set to false.
Users can set to true in config once the method to get_pid is done deterministically
either using pid_file or an accurate keyword
"""
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train | string_to_level | Converts a string to the corresponding log level | zopkio/__main__.py | def string_to_level(log_level):
"""
Converts a string to the corresponding log level
"""
if (log_level.strip().upper() == "DEBUG"):
return logging.DEBUG
if (log_level.strip().upper() == "INFO"):
return logging.INFO
if (log_level.strip().upper() == "WARNING"):
return logging.WARNING
if (log_lev... | def string_to_level(log_level):
"""
Converts a string to the corresponding log level
"""
if (log_level.strip().upper() == "DEBUG"):
return logging.DEBUG
if (log_level.strip().upper() == "INFO"):
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train | main | Parse command line arguments and then run the test suite | zopkio/__main__.py | def main():
"""
Parse command line arguments and then run the test suite
"""
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parser.add_argument('testfile',
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"""
Parse command line arguments and then run the test suite
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parser.add_argument('testfile',
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train | reset_all | Clear relevant globals to start fresh
:return: | zopkio/runtime.py | def reset_all():
"""
Clear relevant globals to start fresh
:return:
"""
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global _password
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global _machine_names
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reset_deployers()
reset_collector()
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train | get_active_config | gets the config value associated with the config_option or returns an empty string if the config is not found
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train | Reporter.generate | Generates the report | zopkio/html_reporter.py | def generate(self):
"""
Generates the report
"""
self._setup()
header_html = self._generate_header()
footer_html = self._generate_footer()
results_topbar_html = self._generate_topbar("results")
summary_topbar_html = self._generate_topbar("summary")
logs_topbar_html = self._generate_... | def generate(self):
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Generates the report
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train | UpdateType.execute | for a given file | Server/Python/src/dbs/dao/Oracle/Dataset/UpdateType.py | def execute ( self, conn, dataset, dataset_access_type, transaction=False ):
"""
for a given file
"""
if not conn:
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train | inputChecks | This is a function to check all the input for GET APIs. | Server/Python/src/dbs/utils/DBSInputValidation.py | def inputChecks(**_params_):
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This is a function to check all the input for GET APIs.
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train | validateStringInput | To check if a string has the required format. This is only used for POST APIs. | Server/Python/src/dbs/utils/DBSInputValidation.py | def validateStringInput(input_key,input_data, read=False):
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train | List.execute | Lists all primary datasets if pattern is not provided. | Server/Python/src/dbs/dao/Oracle/Service/List.py | def execute(self, conn, transaction=False):
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Lists all primary datasets if pattern is not provided.
"""
sql = self.sql
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Lists all primary datasets if pattern is not provided.
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binds = {}
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train | Remove.execute | daoinput keys:
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"""
daoinput keys:
migration_request_id
"""
if not conn:
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daoinput keys:
migration_request_id
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train | jsonstreamer | JSON streamer decorator | Server/Python/src/dbs/utils/dbsUtils.py | def jsonstreamer(func):
"""JSON streamer decorator"""
def wrapper (self, *args, **kwds):
gen = func (self, *args, **kwds)
yield "["
firstItem = True
for item in gen:
if not firstItem:
yield ","
else:
firstItem = False
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"""JSON streamer decorator"""
def wrapper (self, *args, **kwds):
gen = func (self, *args, **kwds)
yield "["
firstItem = True
for item in gen:
if not firstItem:
yield ","
else:
firstItem = False
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train | dbsUtils.decodeLumiIntervals | lumi_list must be of one of the two following formats:
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[a1, a2, a3] | Server/Python/src/dbs/utils/dbsUtils.py | def decodeLumiIntervals(self, lumi_list):
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train | DBSDatasetAccessType.listDatasetAccessTypes | List dataset access types | Server/Python/src/dbs/business/DBSDatasetAccessType.py | def listDatasetAccessTypes(self, dataset_access_type=""):
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List dataset access types
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if isinstance(dataset_access_type, basestring):
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dataset_access_type = str(dataset_access_type)
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List dataset access types
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dataset_access_type = str(dataset_access_type)
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train | IPBlock.block_before | Check the current request and block it if the IP address it's
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Check the current request and block it if the IP address it's
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# To avoid unnecessary database queries, ignore the IP check for
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train | IPBlock.matches_ip | Return True if the given IP is blacklisted, False otherwise. | flask_ipblock/__init__.py | def matches_ip(self, ip):
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# Check the cache if caching is enabled
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if matches_ip is not None:
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train | ListChild.execute | Lists all primary datasets if pattern is not provided. | Server/Python/src/dbs/dao/Oracle/FileParent/ListChild.py | def execute(self, conn, logical_file_name, block_name, block_id, transaction=False):
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Lists all primary datasets if pattern is not provided.
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binds = {}
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"""
Lists all primary datasets if pattern is not provided.
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binds = {}
sql = ''
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train | DBSAcquisitionEra.listAcquisitionEras | Returns all acquistion eras in dbs | Server/Python/src/dbs/business/DBSAcquisitionEra.py | def listAcquisitionEras(self, acq=''):
"""
Returns all acquistion eras in dbs
"""
try:
acq = str(acq)
except:
dbsExceptionHandler('dbsException-invalid-input', 'acquistion_era_name given is not valid : %s' %acq)
conn = self.dbi.connection()
... | def listAcquisitionEras(self, acq=''):
"""
Returns all acquistion eras in dbs
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try:
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dbsExceptionHandler('dbsException-invalid-input', 'acquistion_era_name given is not valid : %s' %acq)
conn = self.dbi.connection()
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train | DBSAcquisitionEra.listAcquisitionEras_CI | Returns all acquistion eras in dbs | Server/Python/src/dbs/business/DBSAcquisitionEra.py | def listAcquisitionEras_CI(self, acq=''):
"""
Returns all acquistion eras in dbs
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acq = str(acq)
except:
dbsExceptionHandler('dbsException-invalid-input', 'aquistion_era_name given is not valid : %s'%acq)
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Returns all acquistion eras in dbs
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dbsExceptionHandler('dbsException-invalid-input', 'aquistion_era_name given is not valid : %s'%acq)
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train | DBSAcquisitionEra.insertAcquisitionEra | Input dictionary has to have the following keys:
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it builds the correct dictionary for dao input and executes the dao | Server/Python/src/dbs/business/DBSAcquisitionEra.py | def insertAcquisitionEra(self, businput):
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train | DBSAcquisitionEra.UpdateAcqEraEndDate | Input dictionary has to have the following keys:
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train | GetID.execute | returns id for a given application | Server/Python/src/dbs/dao/Oracle/OutputModuleConfig/GetID.py | def execute(self, conn, app="", release_version="", pset_hash="", output_label="",
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returns id for a given application
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train | DBSMigrate.prepareDatasetMigrationList | Prepare the ordered lists of blocks based on input DATASET (note Block is different)
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4. Check if parent blocks are already at DST | Server/Python/src/dbs/business/DBSMigrate.py | def prepareDatasetMigrationList(self, conn, request):
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Prepare the ordered lists of blocks based on input DATASET (note Block is different)
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Prepare the ordered lists of blocks based on input DATASET (note Block is different)
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srcblks = self.getSrcBlocks(url,... | def processDatasetBlocks(self, url, conn, inputdataset, order_counter):
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Utility function, that comapares blocks of a dataset at source and dst
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train | DBSMigrate.getParentDatasetsOrderedList | check if input dataset has parents,
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url : source DBS url
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order_counter: the order in which migration happends. | Server/Python/src/dbs/business/DBSMigrate.py | def getParentDatasetsOrderedList(self, url, conn, dataset, order_counter):
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check if input dataset has parents,
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url : source DBS url
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check if input dataset has parents,
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train | DBSMigrate.prepareBlockMigrationList | Prepare the ordered lists of blocks based on input BLOCK
1. see if block already exists at dst (no need to migrate),
raise "ALREADY EXISTS"
2. see if block exists at src & make sure the block's open_for_writing=0
3. see if block has parents
4. see if parent... | Server/Python/src/dbs/business/DBSMigrate.py | def prepareBlockMigrationList(self, conn, request):
"""
Prepare the ordered lists of blocks based on input BLOCK
1. see if block already exists at dst (no need to migrate),
raise "ALREADY EXISTS"
2. see if block exists at src & make sure the block's open_for_writin... | def prepareBlockMigrationList(self, conn, request):
"""
Prepare the ordered lists of blocks based on input BLOCK
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raise "ALREADY EXISTS"
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train | DBSMigrate.removeMigrationRequest | Method to remove pending or failed migration request from the queue. | Server/Python/src/dbs/business/DBSMigrate.py | def removeMigrationRequest(self, migration_rqst):
"""
Method to remove pending or failed migration request from the queue.
"""
conn = self.dbi.connection()
try:
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self.mgrremove.execute(conn, migration_rqst)
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Method to remove pending or failed migration request from the queue.
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tran = conn.begin()
self.mgrremove.execute(conn, migration_rqst)
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train | DBSMigrate.insertMigrationRequest | Method to insert use requests to MIGRATION_REQUESTS table.
request keys: migration_url, migration_input | Server/Python/src/dbs/business/DBSMigrate.py | def insertMigrationRequest(self, request):
"""
Method to insert use requests to MIGRATION_REQUESTS table.
request keys: migration_url, migration_input
"""
conn = self.dbi.connection()
# check if already queued.
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"""
Method to insert use requests to MIGRATION_REQUESTS table.
request keys: migration_url, migration_input
"""
conn = self.dbi.connection()
# check if already queued.
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train | DBSMigrate.listMigrationRequests | get the status of the migration
migratee : can be dataset or block_name | Server/Python/src/dbs/business/DBSMigrate.py | def listMigrationRequests(self, migration_request_id="", block_name="",
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"""
get the status of the migration
migratee : can be dataset or block_name
"""
conn = self.dbi.connection()
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tr... | def listMigrationRequests(self, migration_request_id="", block_name="",
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"""
get the status of the migration
migratee : can be dataset or block_name
"""
conn = self.dbi.connection()
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train | DBSMigrate.listMigrationBlocks | get eveything of block that is has status = 0 and migration_request_id as specified. | Server/Python/src/dbs/business/DBSMigrate.py | def listMigrationBlocks(self, migration_request_id=""):
"""
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"""
conn = self.dbi.connection()
try:
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conn = self.dbi.connection()
try:
return self.mgrblklist.execute(conn, migration_request_id=migration_request_id)
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train | DBSMigrate.updateMigrationRequestStatus | migration_status:
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3=FAILED (will be retried)
9=Terminally FAILED
status change:
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1 -> 2
1 -> 3
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3 -> 1 is allowed for r... | Server/Python/src/dbs/business/DBSMigrate.py | def updateMigrationRequestStatus(self, migration_status, migration_request_id):
"""
migration_status:
0=PENDING
1=IN PROGRESS
2=COMPLETED
3=FAILED (will be retried)
9=Terminally FAILED
status change:
0 -> 1
1 -> 2
1 -> 3
1 ... | def updateMigrationRequestStatus(self, migration_status, migration_request_id):
"""
migration_status:
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1=IN PROGRESS
2=COMPLETED
3=FAILED (will be retried)
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train | DBSMigrate.updateMigrationBlockStatus | migration_status:
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status change:
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3 -> 1 allowed for retry... | Server/Python/src/dbs/business/DBSMigrate.py | def updateMigrationBlockStatus(self, migration_status=0, migration_block=None, migration_request=None):
"""
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0=PENDING
1=IN PROGRESS
2=COMPLETED
3=FAILED (will be retried)
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status change:
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"""
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1=IN PROGRESS
2=COMPLETED
3=FAILED (will be retried)
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train | DBSMigrate.getSrcDatasetParents | List block at src DBS | Server/Python/src/dbs/business/DBSMigrate.py | def getSrcDatasetParents(self, url, dataset):
"""
List block at src DBS
"""
#resturl = "%s/datasetparents?dataset=%s" % (url, dataset)
params={'dataset':dataset}
return cjson.decode(self.callDBSService(url, 'datasetparents', params, {})) | def getSrcDatasetParents(self, url, dataset):
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List block at src DBS
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train | DBSMigrate.getSrcBlockParents | List block at src DBS | Server/Python/src/dbs/business/DBSMigrate.py | def getSrcBlockParents(self, url, block):
"""
List block at src DBS
"""
#blockname = block.replace("#", urllib.quote_plus('#'))
#resturl = "%s/blockparents?block_name=%s" % (url, blockname)
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return cjson.decode(self.callDBSService(url, '... | def getSrcBlockParents(self, url, block):
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List block at src DBS
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#blockname = block.replace("#", urllib.quote_plus('#'))
#resturl = "%s/blockparents?block_name=%s" % (url, blockname)
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train | DBSMigrate.getSrcBlocks | Need to list all blocks of the dataset and its parents starting from the top
For now just list the blocks from this dataset.
Client type call... | Server/Python/src/dbs/business/DBSMigrate.py | def getSrcBlocks(self, url, dataset="", block=""):
"""
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Client type call...
"""
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Need to list all blocks of the dataset and its parents starting from the top
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train | InsertSingle.executeSingle | build dynamic sql based on daoinput | Server/Python/src/dbs/dao/Oracle/InsertTable/Insert.py | def executeSingle( self, conn, daoinput, tablename, transaction = False):
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train | Config._cast_boolean | Helper to convert config values to boolean as ConfigParser do. | decouple.py | def _cast_boolean(self, value):
"""
Helper to convert config values to boolean as ConfigParser do.
"""
if value.lower() not in self._BOOLEANS:
raise ValueError('Not a boolean: %s' % value)
return self._BOOLEANS[value.lower()] | def _cast_boolean(self, value):
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train | parse_requirements | Create a list for the 'install_requires' component of the setup function
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"""
Create a list for the 'install_requires' component of the setup function
by parsing a requirements file
"""
if os.path.exists(requirements_file):
# return a list that contains each line of the requirements file
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Create a list for the 'install_requires' component of the setup function
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... | 9619bafce3783b3e77f0415f8f9a258e33dd1e6f |
train | BriefList.execute | dataset: /a/b/c
block: /a/b/c#d | Server/Python/src/dbs/dao/Oracle/Block/BriefList.py | def execute(self, conn, dataset="", block_name="", data_tier_name="", origin_site_name="", logical_file_name="",
run_num=-1, min_cdate=0, max_cdate=0, min_ldate=0, max_ldate=0, cdate=0,
ldate=0, open_for_writing=-1, transaction = False):
"""
dataset: /a/b/c
block:... | def execute(self, conn, dataset="", block_name="", data_tier_name="", origin_site_name="", logical_file_name="",
run_num=-1, min_cdate=0, max_cdate=0, min_ldate=0, max_ldate=0, cdate=0,
ldate=0, open_for_writing=-1, transaction = False):
"""
dataset: /a/b/c
block:... | [
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":",
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] | dmwm/DBS | python | https://github.com/dmwm/DBS/blob/9619bafce3783b3e77f0415f8f9a258e33dd1e6f/Server/Python/src/dbs/dao/Oracle/Block/BriefList.py#L26-L144 | [
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... | 9619bafce3783b3e77f0415f8f9a258e33dd1e6f |
train | List.execute | Lists all primary dataset types if no user input is provided. | Server/Python/src/dbs/dao/Oracle/PrimaryDSType/List.py | def execute(self, conn, dsType = "", dataset="", transaction = False):
"""
Lists all primary dataset types if no user input is provided.
"""
sql = self.sql
binds={}
if not dsType and not dataset:
pass
elif dsType and dataset in ("", None, '%'):
... | def execute(self, conn, dsType = "", dataset="", transaction = False):
"""
Lists all primary dataset types if no user input is provided.
"""
sql = self.sql
binds={}
if not dsType and not dataset:
pass
elif dsType and dataset in ("", None, '%'):
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] | dmwm/DBS | python | https://github.com/dmwm/DBS/blob/9619bafce3783b3e77f0415f8f9a258e33dd1e6f/Server/Python/src/dbs/dao/Oracle/PrimaryDSType/List.py#L29-L62 | [
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"dataset",... | 9619bafce3783b3e77f0415f8f9a258e33dd1e6f |
train | List.execute | returns id for a given application | Server/Python/src/dbs/dao/Oracle/OutputModuleConfig/List.py | def execute(self, conn, dataset="", logical_file_name="", app="", release_version="", pset_hash="",
output_label ="", block_id=0, global_tag='', transaction = False):
"""
returns id for a given application
"""
#sql=self.sql
binds = {}
setAnd=False
#add search only b... | def execute(self, conn, dataset="", logical_file_name="", app="", release_version="", pset_hash="",
output_label ="", block_id=0, global_tag='', transaction = False):
"""
returns id for a given application
"""
#sql=self.sql
binds = {}
setAnd=False
#add search only b... | [
"returns",
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] | dmwm/DBS | python | https://github.com/dmwm/DBS/blob/9619bafce3783b3e77f0415f8f9a258e33dd1e6f/Server/Python/src/dbs/dao/Oracle/OutputModuleConfig/List.py#L42-L116 | [
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"block_id"... | 9619bafce3783b3e77f0415f8f9a258e33dd1e6f |
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