partition stringclasses 3
values | func_name stringlengths 1 134 | docstring stringlengths 1 46.9k | path stringlengths 4 223 | original_string stringlengths 75 104k | code stringlengths 75 104k | docstring_tokens listlengths 1 1.97k | repo stringlengths 7 55 | language stringclasses 1
value | url stringlengths 87 315 | code_tokens listlengths 19 28.4k | sha stringlengths 40 40 |
|---|---|---|---|---|---|---|---|---|---|---|---|
valid | generatePlot | Generates a table where each cell represent a frequency of pairs
as described below.
x coordinate is the % difference between input records (origData list),
y coordinate is the % difference between corresponding output records. | examples/opf/tools/sp_plotter.py | def generatePlot(outputs, origData):
""" Generates a table where each cell represent a frequency of pairs
as described below.
x coordinate is the % difference between input records (origData list),
y coordinate is the % difference between corresponding output records.
"""
PLOT_PRECISION = 100
distribMat... | def generatePlot(outputs, origData):
""" Generates a table where each cell represent a frequency of pairs
as described below.
x coordinate is the % difference between input records (origData list),
y coordinate is the % difference between corresponding output records.
"""
PLOT_PRECISION = 100
distribMat... | [
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valid | generateRandomInput | Generates a set of input record
Params:
numRecords - how many records to generate
elemSize - the size of each record (num 0s or 1s)
numSet - how many 1s in each record
Returns: a list of inputs | examples/opf/tools/sp_plotter.py | def generateRandomInput(numRecords, elemSize = 400, numSet = 42):
""" Generates a set of input record
Params:
numRecords - how many records to generate
elemSize - the size of each record (num 0s or 1s)
numSet - how many 1s in each record
Returns: a list of inputs
"""
inputs = ... | def generateRandomInput(numRecords, elemSize = 400, numSet = 42):
""" Generates a set of input record
Params:
numRecords - how many records to generate
elemSize - the size of each record (num 0s or 1s)
numSet - how many 1s in each record
Returns: a list of inputs
"""
inputs = ... | [
"Generates",
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/examples/opf/tools/sp_plotter.py#L92-L117 | [
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valid | appendInputWithSimilarValues | Creates an 'one-off' record for each record in the inputs. Appends new
records to the same inputs list. | examples/opf/tools/sp_plotter.py | def appendInputWithSimilarValues(inputs):
""" Creates an 'one-off' record for each record in the inputs. Appends new
records to the same inputs list.
"""
numInputs = len(inputs)
for i in xrange(numInputs):
input = inputs[i]
for j in xrange(len(input)-1):
if input[j] == 1 and input[j+1] == 0:
... | def appendInputWithSimilarValues(inputs):
""" Creates an 'one-off' record for each record in the inputs. Appends new
records to the same inputs list.
"""
numInputs = len(inputs)
for i in xrange(numInputs):
input = inputs[i]
for j in xrange(len(input)-1):
if input[j] == 1 and input[j+1] == 0:
... | [
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valid | appendInputWithNSimilarValues | Creates a neighboring record for each record in the inputs and adds
new records at the end of the inputs list | examples/opf/tools/sp_plotter.py | def appendInputWithNSimilarValues(inputs, numNear = 10):
""" Creates a neighboring record for each record in the inputs and adds
new records at the end of the inputs list
"""
numInputs = len(inputs)
skipOne = False
for i in xrange(numInputs):
input = inputs[i]
numChanged = 0
newInput = copy.deep... | def appendInputWithNSimilarValues(inputs, numNear = 10):
""" Creates a neighboring record for each record in the inputs and adds
new records at the end of the inputs list
"""
numInputs = len(inputs)
skipOne = False
for i in xrange(numInputs):
input = inputs[i]
numChanged = 0
newInput = copy.deep... | [
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valid | modifyBits | Modifies up to maxChanges number of bits in the inputVal | examples/opf/tools/sp_plotter.py | def modifyBits(inputVal, maxChanges):
""" Modifies up to maxChanges number of bits in the inputVal
"""
changes = np.random.random_integers(0, maxChanges, 1)[0]
if changes == 0:
return inputVal
inputWidth = len(inputVal)
whatToChange = np.random.random_integers(0, 41, changes)
runningIndex = -1
n... | def modifyBits(inputVal, maxChanges):
""" Modifies up to maxChanges number of bits in the inputVal
"""
changes = np.random.random_integers(0, maxChanges, 1)[0]
if changes == 0:
return inputVal
inputWidth = len(inputVal)
whatToChange = np.random.random_integers(0, 41, changes)
runningIndex = -1
n... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/examples/opf/tools/sp_plotter.py#L166-L190 | [
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valid | getRandomWithMods | Returns a random selection from the inputSpace with randomly modified
up to maxChanges number of bits. | examples/opf/tools/sp_plotter.py | def getRandomWithMods(inputSpace, maxChanges):
""" Returns a random selection from the inputSpace with randomly modified
up to maxChanges number of bits.
"""
size = len(inputSpace)
ind = np.random.random_integers(0, size-1, 1)[0]
value = copy.deepcopy(inputSpace[ind])
if maxChanges == 0:
return valu... | def getRandomWithMods(inputSpace, maxChanges):
""" Returns a random selection from the inputSpace with randomly modified
up to maxChanges number of bits.
"""
size = len(inputSpace)
ind = np.random.random_integers(0, size-1, 1)[0]
value = copy.deepcopy(inputSpace[ind])
if maxChanges == 0:
return valu... | [
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valid | createEncoder | Creates and returns a #MultiEncoder including a ScalarEncoder for
energy consumption and a DateEncoder for the time of the day.
@see nupic/encoders/__init__.py for type to file-name mapping
@see nupic/encoders for encoder source files | examples/network/hierarchy_network_demo.py | def createEncoder():
"""
Creates and returns a #MultiEncoder including a ScalarEncoder for
energy consumption and a DateEncoder for the time of the day.
@see nupic/encoders/__init__.py for type to file-name mapping
@see nupic/encoders for encoder source files
"""
encoder = MultiEncoder()
encoder.addMul... | def createEncoder():
"""
Creates and returns a #MultiEncoder including a ScalarEncoder for
energy consumption and a DateEncoder for the time of the day.
@see nupic/encoders/__init__.py for type to file-name mapping
@see nupic/encoders for encoder source files
"""
encoder = MultiEncoder()
encoder.addMul... | [
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valid | createRecordSensor | Creates a RecordSensor region that allows us to specify a file record
stream as the input source. | examples/network/hierarchy_network_demo.py | def createRecordSensor(network, name, dataSource):
"""
Creates a RecordSensor region that allows us to specify a file record
stream as the input source.
"""
# Specific type of region. Possible options can be found in /nupic/regions/
regionType = "py.RecordSensor"
# Creates a json from specified dictiona... | def createRecordSensor(network, name, dataSource):
"""
Creates a RecordSensor region that allows us to specify a file record
stream as the input source.
"""
# Specific type of region. Possible options can be found in /nupic/regions/
regionType = "py.RecordSensor"
# Creates a json from specified dictiona... | [
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valid | createNetwork | Creates and returns a new Network with a sensor region reading data from
'dataSource'. There are two hierarchical levels, each with one SP and one TM.
@param dataSource - A RecordStream containing the input data
@returns a Network ready to run | examples/network/hierarchy_network_demo.py | def createNetwork(dataSource):
"""Creates and returns a new Network with a sensor region reading data from
'dataSource'. There are two hierarchical levels, each with one SP and one TM.
@param dataSource - A RecordStream containing the input data
@returns a Network ready to run
"""
network = Network()
# C... | def createNetwork(dataSource):
"""Creates and returns a new Network with a sensor region reading data from
'dataSource'. There are two hierarchical levels, each with one SP and one TM.
@param dataSource - A RecordStream containing the input data
@returns a Network ready to run
"""
network = Network()
# C... | [
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valid | runNetwork | Runs specified Network writing the ensuing anomaly
scores to writer.
@param network: The Network instance to be run
@param writer: A csv.writer used to write to output file. | examples/network/hierarchy_network_demo.py | def runNetwork(network, numRecords, writer):
"""
Runs specified Network writing the ensuing anomaly
scores to writer.
@param network: The Network instance to be run
@param writer: A csv.writer used to write to output file.
"""
sensorRegion = network.regions[_RECORD_SENSOR]
l1SpRegion = network.regions[... | def runNetwork(network, numRecords, writer):
"""
Runs specified Network writing the ensuing anomaly
scores to writer.
@param network: The Network instance to be run
@param writer: A csv.writer used to write to output file.
"""
sensorRegion = network.regions[_RECORD_SENSOR]
l1SpRegion = network.regions[... | [
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valid | clean | Removes trailing whitespace on each line. | src/nupic/swarming/hypersearch/object_json.py | def clean(s):
"""Removes trailing whitespace on each line."""
lines = [l.rstrip() for l in s.split('\n')]
return '\n'.join(lines) | def clean(s):
"""Removes trailing whitespace on each line."""
lines = [l.rstrip() for l in s.split('\n')]
return '\n'.join(lines) | [
"Removes",
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valid | MetricsManager.update | Compute the new metrics values, given the next inference/ground-truth values
:param results: (:class:`~nupic.frameworks.opf.opf_utils.ModelResult`)
object that was computed during the last iteration of the model.
:returns: (dict) where each key is the metric-name, and the values are
... | src/nupic/frameworks/opf/prediction_metrics_manager.py | def update(self, results):
"""
Compute the new metrics values, given the next inference/ground-truth values
:param results: (:class:`~nupic.frameworks.opf.opf_utils.ModelResult`)
object that was computed during the last iteration of the model.
:returns: (dict) where each key is the metric-... | def update(self, results):
"""
Compute the new metrics values, given the next inference/ground-truth values
:param results: (:class:`~nupic.frameworks.opf.opf_utils.ModelResult`)
object that was computed during the last iteration of the model.
:returns: (dict) where each key is the metric-... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/frameworks/opf/prediction_metrics_manager.py#L94-L156 | [
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"# (pprint.pformat(results.rawInput), pprint.pformat(results.inferences))",
"self",... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | MetricsManager.getMetrics | Gets the current metric values
:returns: (dict) where each key is the metric-name, and the values are
it scalar value. Same as the output of
:meth:`~nupic.frameworks.opf.prediction_metrics_manager.MetricsManager.update` | src/nupic/frameworks/opf/prediction_metrics_manager.py | def getMetrics(self):
"""
Gets the current metric values
:returns: (dict) where each key is the metric-name, and the values are
it scalar value. Same as the output of
:meth:`~nupic.frameworks.opf.prediction_metrics_manager.MetricsManager.update`
"""
result = {}
f... | def getMetrics(self):
"""
Gets the current metric values
:returns: (dict) where each key is the metric-name, and the values are
it scalar value. Same as the output of
:meth:`~nupic.frameworks.opf.prediction_metrics_manager.MetricsManager.update`
"""
result = {}
f... | [
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valid | MetricsManager.getMetricDetails | Gets detailed info about a given metric, in addition to its value. This
may including any statistics or auxilary data that are computed for a given
metric.
:param metricLabel: (string) label of the given metric (see
:class:`~nupic.frameworks.opf.metrics.MetricSpec`)
:returns: (dict) of met... | src/nupic/frameworks/opf/prediction_metrics_manager.py | def getMetricDetails(self, metricLabel):
"""
Gets detailed info about a given metric, in addition to its value. This
may including any statistics or auxilary data that are computed for a given
metric.
:param metricLabel: (string) label of the given metric (see
:class:`~nupic.frameworks... | def getMetricDetails(self, metricLabel):
"""
Gets detailed info about a given metric, in addition to its value. This
may including any statistics or auxilary data that are computed for a given
metric.
:param metricLabel: (string) label of the given metric (see
:class:`~nupic.frameworks... | [
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valid | MetricsManager._addResults | Stores the current model results in the manager's internal store
Parameters:
-----------------------------------------------------------------------
results: A ModelResults object that contains the current timestep's
input/inferences | src/nupic/frameworks/opf/prediction_metrics_manager.py | def _addResults(self, results):
"""
Stores the current model results in the manager's internal store
Parameters:
-----------------------------------------------------------------------
results: A ModelResults object that contains the current timestep's
input/inferences
"""
# ... | def _addResults(self, results):
"""
Stores the current model results in the manager's internal store
Parameters:
-----------------------------------------------------------------------
results: A ModelResults object that contains the current timestep's
input/inferences
"""
# ... | [
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valid | MetricsManager._getGroundTruth | Get the actual value for this field
Parameters:
-----------------------------------------------------------------------
sensorInputElement: The inference element (part of the inference) that
is being used for this metric | src/nupic/frameworks/opf/prediction_metrics_manager.py | def _getGroundTruth(self, inferenceElement):
"""
Get the actual value for this field
Parameters:
-----------------------------------------------------------------------
sensorInputElement: The inference element (part of the inference) that
is being used for this me... | def _getGroundTruth(self, inferenceElement):
"""
Get the actual value for this field
Parameters:
-----------------------------------------------------------------------
sensorInputElement: The inference element (part of the inference) that
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valid | MetricsManager.__constructMetricsModules | Creates the required metrics modules
Parameters:
-----------------------------------------------------------------------
metricSpecs:
A sequence of MetricSpec objects that specify which metric modules to
instantiate | src/nupic/frameworks/opf/prediction_metrics_manager.py | def __constructMetricsModules(self, metricSpecs):
"""
Creates the required metrics modules
Parameters:
-----------------------------------------------------------------------
metricSpecs:
A sequence of MetricSpec objects that specify which metric modules to
instantiate
"""
if no... | def __constructMetricsModules(self, metricSpecs):
"""
Creates the required metrics modules
Parameters:
-----------------------------------------------------------------------
metricSpecs:
A sequence of MetricSpec objects that specify which metric modules to
instantiate
"""
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valid | _generateSimple | Generate a simple dataset. This contains a bunch of non-overlapping
sequences.
At the end of the dataset, we introduce missing records so that test
code can insure that the model didn't get confused by them.
Parameters:
----------------------------------------------------
filename: name of the... | examples/opf/experiments/missing_record/make_datasets.py | def _generateSimple(filename="simple.csv", numSequences=1, elementsPerSeq=3,
numRepeats=10):
""" Generate a simple dataset. This contains a bunch of non-overlapping
sequences.
At the end of the dataset, we introduce missing records so that test
code can insure that the model didn't get ... | def _generateSimple(filename="simple.csv", numSequences=1, elementsPerSeq=3,
numRepeats=10):
""" Generate a simple dataset. This contains a bunch of non-overlapping
sequences.
At the end of the dataset, we introduce missing records so that test
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valid | InferenceShifter.shift | Shift the model result and return the new instance.
Queues up the T(i+1) prediction value and emits a T(i)
input/prediction pair, if possible. E.g., if the previous T(i-1)
iteration was learn-only, then we would not have a T(i) prediction in our
FIFO and would not be able to emit a meaningful input/pre... | src/nupic/data/inference_shifter.py | def shift(self, modelResult):
"""Shift the model result and return the new instance.
Queues up the T(i+1) prediction value and emits a T(i)
input/prediction pair, if possible. E.g., if the previous T(i-1)
iteration was learn-only, then we would not have a T(i) prediction in our
FIFO and would not b... | def shift(self, modelResult):
"""Shift the model result and return the new instance.
Queues up the T(i+1) prediction value and emits a T(i)
input/prediction pair, if possible. E.g., if the previous T(i-1)
iteration was learn-only, then we would not have a T(i) prediction in our
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valid | generateStats | Collect statistics for each of the fields in the user input data file and
return a stats dict object.
Parameters:
------------------------------------------------------------------------------
filename: The path and name of the data file.
maxSamples: Upper bound on the number of rows to... | src/nupic/data/stats_v2.py | def generateStats(filename, maxSamples = None,):
"""
Collect statistics for each of the fields in the user input data file and
return a stats dict object.
Parameters:
------------------------------------------------------------------------------
filename: The path and name of the data file.
m... | def generateStats(filename, maxSamples = None,):
"""
Collect statistics for each of the fields in the user input data file and
return a stats dict object.
Parameters:
------------------------------------------------------------------------------
filename: The path and name of the data file.
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valid | NumberStatsCollector.getStats | Override of getStats() in BaseStatsCollector
stats: A dictionary where all the stats are
outputted | src/nupic/data/stats_v2.py | def getStats(self, stats):
""" Override of getStats() in BaseStatsCollector
stats: A dictionary where all the stats are
outputted
"""
BaseStatsCollector.getStats(self, stats)
sortedNumberList = sorted(self.valueList)
listLength = len(sortedNumberList)
min = sortedNumberList[0... | def getStats(self, stats):
""" Override of getStats() in BaseStatsCollector
stats: A dictionary where all the stats are
outputted
"""
BaseStatsCollector.getStats(self, stats)
sortedNumberList = sorted(self.valueList)
listLength = len(sortedNumberList)
min = sortedNumberList[0... | [
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valid | main | Run according to options in sys.argv and diff classifiers. | scripts/run_experiment_classifier_diff.py | def main():
"""Run according to options in sys.argv and diff classifiers."""
initLogging(verbose=True)
# Initialize PRNGs
initExperimentPrng()
# Mock out the creation of the SDRClassifier.
@staticmethod
def _mockCreate(*args, **kwargs):
kwargs.pop('implementation', None)
return SDRClassifierDiff... | def main():
"""Run according to options in sys.argv and diff classifiers."""
initLogging(verbose=True)
# Initialize PRNGs
initExperimentPrng()
# Mock out the creation of the SDRClassifier.
@staticmethod
def _mockCreate(*args, **kwargs):
kwargs.pop('implementation', None)
return SDRClassifierDiff... | [
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valid | _abbreviate | Abbreviate the given text to threshold chars and append an ellipsis if its
length exceeds threshold; used for logging;
NOTE: the resulting text could be longer than threshold due to the ellipsis | src/nupic/database/client_jobs_dao.py | def _abbreviate(text, threshold):
""" Abbreviate the given text to threshold chars and append an ellipsis if its
length exceeds threshold; used for logging;
NOTE: the resulting text could be longer than threshold due to the ellipsis
"""
if text is not None and len(text) > threshold:
text = text[:threshol... | def _abbreviate(text, threshold):
""" Abbreviate the given text to threshold chars and append an ellipsis if its
length exceeds threshold; used for logging;
NOTE: the resulting text could be longer than threshold due to the ellipsis
"""
if text is not None and len(text) > threshold:
text = text[:threshol... | [
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valid | ClientJobsDAO.__getDBNameForVersion | Generates the ClientJobs database name for the given version of the
database
Parameters:
----------------------------------------------------------------
dbVersion: ClientJobs database version number
retval: the ClientJobs database name for the given DB version | src/nupic/database/client_jobs_dao.py | def __getDBNameForVersion(cls, dbVersion):
""" Generates the ClientJobs database name for the given version of the
database
Parameters:
----------------------------------------------------------------
dbVersion: ClientJobs database version number
retval: the ClientJobs database na... | def __getDBNameForVersion(cls, dbVersion):
""" Generates the ClientJobs database name for the given version of the
database
Parameters:
----------------------------------------------------------------
dbVersion: ClientJobs database version number
retval: the ClientJobs database na... | [
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valid | ClientJobsDAO.get | Get the instance of the ClientJobsDAO created for this process (or
perhaps at some point in the future, for this thread).
Parameters:
----------------------------------------------------------------
retval: instance of ClientJobsDAO | src/nupic/database/client_jobs_dao.py | def get():
""" Get the instance of the ClientJobsDAO created for this process (or
perhaps at some point in the future, for this thread).
Parameters:
----------------------------------------------------------------
retval: instance of ClientJobsDAO
"""
# Instantiate if needed
if Client... | def get():
""" Get the instance of the ClientJobsDAO created for this process (or
perhaps at some point in the future, for this thread).
Parameters:
----------------------------------------------------------------
retval: instance of ClientJobsDAO
"""
# Instantiate if needed
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valid | ClientJobsDAO._columnNameDBToPublic | Convert a database internal column name to a public name. This
takes something of the form word1_word2_word3 and converts it to:
word1Word2Word3. If the db field name starts with '_', it is stripped out
so that the name is compatible with collections.namedtuple.
for example: _word1_word2_word3 => word1W... | src/nupic/database/client_jobs_dao.py | def _columnNameDBToPublic(self, dbName):
""" Convert a database internal column name to a public name. This
takes something of the form word1_word2_word3 and converts it to:
word1Word2Word3. If the db field name starts with '_', it is stripped out
so that the name is compatible with collections.namedtup... | def _columnNameDBToPublic(self, dbName):
""" Convert a database internal column name to a public name. This
takes something of the form word1_word2_word3 and converts it to:
word1Word2Word3. If the db field name starts with '_', it is stripped out
so that the name is compatible with collections.namedtup... | [
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valid | ClientJobsDAO.connect | Locate the current version of the jobs DB or create a new one, and
optionally delete old versions laying around. If desired, this method
can be called at any time to re-create the tables from scratch, delete
old versions of the database, etc.
Parameters:
--------------------------------------------... | src/nupic/database/client_jobs_dao.py | def connect(self, deleteOldVersions=False, recreate=False):
""" Locate the current version of the jobs DB or create a new one, and
optionally delete old versions laying around. If desired, this method
can be called at any time to re-create the tables from scratch, delete
old versions of the database, et... | def connect(self, deleteOldVersions=False, recreate=False):
""" Locate the current version of the jobs DB or create a new one, and
optionally delete old versions laying around. If desired, this method
can be called at any time to re-create the tables from scratch, delete
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valid | ClientJobsDAO._initTables | Initialize tables, if needed
Parameters:
----------------------------------------------------------------
cursor: SQL cursor
deleteOldVersions: if true, delete any old versions of the DB left
on the server
recreate: if true, recreate the database ... | src/nupic/database/client_jobs_dao.py | def _initTables(self, cursor, deleteOldVersions, recreate):
""" Initialize tables, if needed
Parameters:
----------------------------------------------------------------
cursor: SQL cursor
deleteOldVersions: if true, delete any old versions of the DB left
on... | def _initTables(self, cursor, deleteOldVersions, recreate):
""" Initialize tables, if needed
Parameters:
----------------------------------------------------------------
cursor: SQL cursor
deleteOldVersions: if true, delete any old versions of the DB left
on... | [
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valid | ClientJobsDAO._getMatchingRowsNoRetries | Return a sequence of matching rows with the requested field values from
a table or empty sequence if nothing matched.
tableInfo: Table information: a ClientJobsDAO._TableInfoBase instance
conn: Owned connection acquired from ConnectionFactory.get()
fieldsToMatch: Dictionary of inter... | src/nupic/database/client_jobs_dao.py | def _getMatchingRowsNoRetries(self, tableInfo, conn, fieldsToMatch,
selectFieldNames, maxRows=None):
""" Return a sequence of matching rows with the requested field values from
a table or empty sequence if nothing matched.
tableInfo: Table information: a ClientJobsDAO.... | def _getMatchingRowsNoRetries(self, tableInfo, conn, fieldsToMatch,
selectFieldNames, maxRows=None):
""" Return a sequence of matching rows with the requested field values from
a table or empty sequence if nothing matched.
tableInfo: Table information: a ClientJobsDAO.... | [
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valid | ClientJobsDAO._getMatchingRowsWithRetries | Like _getMatchingRowsNoRetries(), but with retries on transient MySQL
failures | src/nupic/database/client_jobs_dao.py | def _getMatchingRowsWithRetries(self, tableInfo, fieldsToMatch,
selectFieldNames, maxRows=None):
""" Like _getMatchingRowsNoRetries(), but with retries on transient MySQL
failures
"""
with ConnectionFactory.get() as conn:
return self._getMatchingRowsNoRetries(tabl... | def _getMatchingRowsWithRetries(self, tableInfo, fieldsToMatch,
selectFieldNames, maxRows=None):
""" Like _getMatchingRowsNoRetries(), but with retries on transient MySQL
failures
"""
with ConnectionFactory.get() as conn:
return self._getMatchingRowsNoRetries(tabl... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L995-L1002 | [
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valid | ClientJobsDAO._getOneMatchingRowNoRetries | Return a single matching row with the requested field values from the
the requested table or None if nothing matched.
tableInfo: Table information: a ClientJobsDAO._TableInfoBase instance
conn: Owned connection acquired from ConnectionFactory.get()
fieldsToMatch: Dictionary of inter... | src/nupic/database/client_jobs_dao.py | def _getOneMatchingRowNoRetries(self, tableInfo, conn, fieldsToMatch,
selectFieldNames):
""" Return a single matching row with the requested field values from the
the requested table or None if nothing matched.
tableInfo: Table information: a ClientJobsDAO._TableInfo... | def _getOneMatchingRowNoRetries(self, tableInfo, conn, fieldsToMatch,
selectFieldNames):
""" Return a single matching row with the requested field values from the
the requested table or None if nothing matched.
tableInfo: Table information: a ClientJobsDAO._TableInfo... | [
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valid | ClientJobsDAO._getOneMatchingRowWithRetries | Like _getOneMatchingRowNoRetries(), but with retries on transient MySQL
failures | src/nupic/database/client_jobs_dao.py | def _getOneMatchingRowWithRetries(self, tableInfo, fieldsToMatch,
selectFieldNames):
""" Like _getOneMatchingRowNoRetries(), but with retries on transient MySQL
failures
"""
with ConnectionFactory.get() as conn:
return self._getOneMatchingRowNoRetries(tableInfo,... | def _getOneMatchingRowWithRetries(self, tableInfo, fieldsToMatch,
selectFieldNames):
""" Like _getOneMatchingRowNoRetries(), but with retries on transient MySQL
failures
"""
with ConnectionFactory.get() as conn:
return self._getOneMatchingRowNoRetries(tableInfo,... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1037-L1044 | [
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valid | ClientJobsDAO._insertOrGetUniqueJobNoRetries | Attempt to insert a row with the given parameters into the jobs table.
Return jobID of the inserted row, or of an existing row with matching
client/jobHash key.
The combination of client and jobHash are expected to be unique (enforced
by a unique index on the two columns).
NOTE: It's possibe that ... | src/nupic/database/client_jobs_dao.py | def _insertOrGetUniqueJobNoRetries(
self, conn, client, cmdLine, jobHash, clientInfo, clientKey, params,
minimumWorkers, maximumWorkers, jobType, priority, alreadyRunning):
""" Attempt to insert a row with the given parameters into the jobs table.
Return jobID of the inserted row, or of an existing row ... | def _insertOrGetUniqueJobNoRetries(
self, conn, client, cmdLine, jobHash, clientInfo, clientKey, params,
minimumWorkers, maximumWorkers, jobType, priority, alreadyRunning):
""" Attempt to insert a row with the given parameters into the jobs table.
Return jobID of the inserted row, or of an existing row ... | [
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valid | ClientJobsDAO._resumeJobNoRetries | Resumes processing of an existing job that is presently in the
STATUS_COMPLETED state.
NOTE: this is primarily for resuming suspended Production and Stream Jobs; DO
NOT use it on Hypersearch jobs.
This prepares an existing job entry to resume processing. The CJM is always
periodically sweeping th... | src/nupic/database/client_jobs_dao.py | def _resumeJobNoRetries(self, conn, jobID, alreadyRunning):
""" Resumes processing of an existing job that is presently in the
STATUS_COMPLETED state.
NOTE: this is primarily for resuming suspended Production and Stream Jobs; DO
NOT use it on Hypersearch jobs.
This prepares an existing job entry ... | def _resumeJobNoRetries(self, conn, jobID, alreadyRunning):
""" Resumes processing of an existing job that is presently in the
STATUS_COMPLETED state.
NOTE: this is primarily for resuming suspended Production and Stream Jobs; DO
NOT use it on Hypersearch jobs.
This prepares an existing job entry ... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1181-L1260 | [
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valid | ClientJobsDAO.jobResume | Resumes processing of an existing job that is presently in the
STATUS_COMPLETED state.
NOTE: this is primarily for resuming suspended Production Jobs; DO NOT use
it on Hypersearch jobs.
NOTE: The job MUST be in the STATUS_COMPLETED state at the time of this
call, otherwise an exception will be rai... | src/nupic/database/client_jobs_dao.py | def jobResume(self, jobID, alreadyRunning=False):
""" Resumes processing of an existing job that is presently in the
STATUS_COMPLETED state.
NOTE: this is primarily for resuming suspended Production Jobs; DO NOT use
it on Hypersearch jobs.
NOTE: The job MUST be in the STATUS_COMPLETED state at the... | def jobResume(self, jobID, alreadyRunning=False):
""" Resumes processing of an existing job that is presently in the
STATUS_COMPLETED state.
NOTE: this is primarily for resuming suspended Production Jobs; DO NOT use
it on Hypersearch jobs.
NOTE: The job MUST be in the STATUS_COMPLETED state at the... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1304-L1347 | [
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valid | ClientJobsDAO.jobInsert | Add an entry to the jobs table for a new job request. This is called by
clients that wish to startup a new job, like a Hypersearch, stream job, or
specific model evaluation from the engine.
This puts a new entry into the jobs table. The CJM is always periodically
sweeping the jobs table and when it fin... | src/nupic/database/client_jobs_dao.py | def jobInsert(self, client, cmdLine, clientInfo='', clientKey='', params='',
alreadyRunning=False, minimumWorkers=0, maximumWorkers=0,
jobType='', priority=DEFAULT_JOB_PRIORITY):
""" Add an entry to the jobs table for a new job request. This is called by
clients that wish to star... | def jobInsert(self, client, cmdLine, clientInfo='', clientKey='', params='',
alreadyRunning=False, minimumWorkers=0, maximumWorkers=0,
jobType='', priority=DEFAULT_JOB_PRIORITY):
""" Add an entry to the jobs table for a new job request. This is called by
clients that wish to star... | [
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valid | ClientJobsDAO.jobInsertUnique | Add an entry to the jobs table for a new job request, but only if the
same job, by the same client is not already running. If the job is already
running, or queued up to run, this call does nothing. If the job does not
exist in the jobs table or has completed, it will be inserted and/or started
up again... | src/nupic/database/client_jobs_dao.py | def jobInsertUnique(self, client, cmdLine, jobHash, clientInfo='',
clientKey='', params='', minimumWorkers=0,
maximumWorkers=0, jobType='',
priority=DEFAULT_JOB_PRIORITY):
""" Add an entry to the jobs table for a new job request, but only if the
... | def jobInsertUnique(self, client, cmdLine, jobHash, clientInfo='',
clientKey='', params='', minimumWorkers=0,
maximumWorkers=0, jobType='',
priority=DEFAULT_JOB_PRIORITY):
""" Add an entry to the jobs table for a new job request, but only if the
... | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO._startJobWithRetries | Place the given job in STATUS_RUNNING mode; the job is expected to be
STATUS_NOTSTARTED.
NOTE: this function was factored out of jobStartNext because it's also
needed for testing (e.g., test_client_jobs_dao.py) | src/nupic/database/client_jobs_dao.py | def _startJobWithRetries(self, jobID):
""" Place the given job in STATUS_RUNNING mode; the job is expected to be
STATUS_NOTSTARTED.
NOTE: this function was factored out of jobStartNext because it's also
needed for testing (e.g., test_client_jobs_dao.py)
"""
with ConnectionFactory.get() as conn... | def _startJobWithRetries(self, jobID):
""" Place the given job in STATUS_RUNNING mode; the job is expected to be
STATUS_NOTSTARTED.
NOTE: this function was factored out of jobStartNext because it's also
needed for testing (e.g., test_client_jobs_dao.py)
"""
with ConnectionFactory.get() as conn... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1549-L1570 | [
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"' start_time=UTC_TIMESTAMP(), '",
"'... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobStartNext | For use only by Nupic Scheduler (also known as ClientJobManager) Look
through the jobs table and see if any new job requests have been
queued up. If so, pick one and mark it as starting up and create the
model table to hold the results
Parameters:
---------------------------------------------------... | src/nupic/database/client_jobs_dao.py | def jobStartNext(self):
""" For use only by Nupic Scheduler (also known as ClientJobManager) Look
through the jobs table and see if any new job requests have been
queued up. If so, pick one and mark it as starting up and create the
model table to hold the results
Parameters:
-------------------... | def jobStartNext(self):
""" For use only by Nupic Scheduler (also known as ClientJobManager) Look
through the jobs table and see if any new job requests have been
queued up. If so, pick one and mark it as starting up and create the
model table to hold the results
Parameters:
-------------------... | [
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"# this select instead",
... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobReactivateRunningJobs | Look through the jobs table and reactivate all that are already in the
running state by setting their _eng_allocate_new_workers fields to True;
used by Nupic Scheduler as part of its failure-recovery procedure. | src/nupic/database/client_jobs_dao.py | def jobReactivateRunningJobs(self):
""" Look through the jobs table and reactivate all that are already in the
running state by setting their _eng_allocate_new_workers fields to True;
used by Nupic Scheduler as part of its failure-recovery procedure.
"""
# Get a database connection and cursor
w... | def jobReactivateRunningJobs(self):
""" Look through the jobs table and reactivate all that are already in the
running state by setting their _eng_allocate_new_workers fields to True;
used by Nupic Scheduler as part of its failure-recovery procedure.
"""
# Get a database connection and cursor
w... | [
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"' _eng_allocate_new_workers=TRUE '",
... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobGetDemand | Look through the jobs table and get the demand - minimum and maximum
number of workers requested, if new workers are to be allocated, if there
are any untended dead workers, for all running jobs.
Parameters:
----------------------------------------------------------------
retval: list of Clien... | src/nupic/database/client_jobs_dao.py | def jobGetDemand(self,):
""" Look through the jobs table and get the demand - minimum and maximum
number of workers requested, if new workers are to be allocated, if there
are any untended dead workers, for all running jobs.
Parameters:
--------------------------------------------------------------... | def jobGetDemand(self,):
""" Look through the jobs table and get the demand - minimum and maximum
number of workers requested, if new workers are to be allocated, if there
are any untended dead workers, for all running jobs.
Parameters:
--------------------------------------------------------------... | [
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valid | ClientJobsDAO.jobCancelAllRunningJobs | Set cancel field of all currently-running jobs to true. | src/nupic/database/client_jobs_dao.py | def jobCancelAllRunningJobs(self):
""" Set cancel field of all currently-running jobs to true.
"""
# Get a database connection and cursor
with ConnectionFactory.get() as conn:
query = 'UPDATE %s SET cancel=TRUE WHERE status<>%%s ' \
% (self.jobsTableName,)
conn.cursor.execute... | def jobCancelAllRunningJobs(self):
""" Set cancel field of all currently-running jobs to true.
"""
# Get a database connection and cursor
with ConnectionFactory.get() as conn:
query = 'UPDATE %s SET cancel=TRUE WHERE status<>%%s ' \
% (self.jobsTableName,)
conn.cursor.execute... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1646-L1657 | [
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valid | ClientJobsDAO.jobCountCancellingJobs | Look through the jobs table and count the running jobs whose
cancel field is true.
Parameters:
----------------------------------------------------------------
retval: A count of running jobs with the cancel field set to true. | src/nupic/database/client_jobs_dao.py | def jobCountCancellingJobs(self,):
""" Look through the jobs table and count the running jobs whose
cancel field is true.
Parameters:
----------------------------------------------------------------
retval: A count of running jobs with the cancel field set to true.
"""
with ConnectionF... | def jobCountCancellingJobs(self,):
""" Look through the jobs table and count the running jobs whose
cancel field is true.
Parameters:
----------------------------------------------------------------
retval: A count of running jobs with the cancel field set to true.
"""
with ConnectionF... | [
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valid | ClientJobsDAO.jobGetCancellingJobs | Look through the jobs table and get the list of running jobs whose
cancel field is true.
Parameters:
----------------------------------------------------------------
retval: A (possibly empty) sequence of running job IDs with cancel field
set to true | src/nupic/database/client_jobs_dao.py | def jobGetCancellingJobs(self,):
""" Look through the jobs table and get the list of running jobs whose
cancel field is true.
Parameters:
----------------------------------------------------------------
retval: A (possibly empty) sequence of running job IDs with cancel field
... | def jobGetCancellingJobs(self,):
""" Look through the jobs table and get the list of running jobs whose
cancel field is true.
Parameters:
----------------------------------------------------------------
retval: A (possibly empty) sequence of running job IDs with cancel field
... | [
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valid | ClientJobsDAO.partitionAtIntervals | Generator to allow iterating slices at dynamic intervals
Parameters:
----------------------------------------------------------------
data: Any data structure that supports slicing (i.e. list or tuple)
*intervals: Iterable of intervals. The sum of intervals should be less
than, o... | src/nupic/database/client_jobs_dao.py | def partitionAtIntervals(data, intervals):
""" Generator to allow iterating slices at dynamic intervals
Parameters:
----------------------------------------------------------------
data: Any data structure that supports slicing (i.e. list or tuple)
*intervals: Iterable of intervals. The sum ... | def partitionAtIntervals(data, intervals):
""" Generator to allow iterating slices at dynamic intervals
Parameters:
----------------------------------------------------------------
data: Any data structure that supports slicing (i.e. list or tuple)
*intervals: Iterable of intervals. The sum ... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1706-L1724 | [
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valid | ClientJobsDAO._combineResults | Return a list of namedtuples from the result of a join query. A
single database result is partitioned at intervals corresponding to the
fields in namedTuples. The return value is the result of applying
namedtuple._make() to each of the partitions, for each of the namedTuples.
Parameters:
--------... | src/nupic/database/client_jobs_dao.py | def _combineResults(result, *namedTuples):
""" Return a list of namedtuples from the result of a join query. A
single database result is partitioned at intervals corresponding to the
fields in namedTuples. The return value is the result of applying
namedtuple._make() to each of the partitions, for eac... | def _combineResults(result, *namedTuples):
""" Return a list of namedtuples from the result of a join query. A
single database result is partitioned at intervals corresponding to the
fields in namedTuples. The return value is the result of applying
namedtuple._make() to each of the partitions, for eac... | [
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valid | ClientJobsDAO.jobInfoWithModels | Get all info about a job, with model details, if available.
Parameters:
----------------------------------------------------------------
job: jobID of the job to query
retval: A sequence of two-tuples if the jobID exists in the jobs
table (exeption is raised if it doesn't exist). Each t... | src/nupic/database/client_jobs_dao.py | def jobInfoWithModels(self, jobID):
""" Get all info about a job, with model details, if available.
Parameters:
----------------------------------------------------------------
job: jobID of the job to query
retval: A sequence of two-tuples if the jobID exists in the jobs
table (exe... | def jobInfoWithModels(self, jobID):
""" Get all info about a job, with model details, if available.
Parameters:
----------------------------------------------------------------
job: jobID of the job to query
retval: A sequence of two-tuples if the jobID exists in the jobs
table (exe... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1748-L1790 | [
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valid | ClientJobsDAO.jobInfo | Get all info about a job
Parameters:
----------------------------------------------------------------
job: jobID of the job to query
retval: namedtuple containing the job info. | src/nupic/database/client_jobs_dao.py | def jobInfo(self, jobID):
""" Get all info about a job
Parameters:
----------------------------------------------------------------
job: jobID of the job to query
retval: namedtuple containing the job info.
"""
row = self._getOneMatchingRowWithRetries(
self._jobs, dict(job_id=job... | def jobInfo(self, jobID):
""" Get all info about a job
Parameters:
----------------------------------------------------------------
job: jobID of the job to query
retval: namedtuple containing the job info.
"""
row = self._getOneMatchingRowWithRetries(
self._jobs, dict(job_id=job... | [
"Get",
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1794-L1812 | [
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valid | ClientJobsDAO.jobSetStatus | Change the status on the given job
Parameters:
----------------------------------------------------------------
job: jobID of the job to change status
status: new status string (ClientJobsDAO.STATUS_xxxxx)
useConnectionID: True if the connection id of the calling function
must be th... | src/nupic/database/client_jobs_dao.py | def jobSetStatus(self, jobID, status, useConnectionID=True,):
""" Change the status on the given job
Parameters:
----------------------------------------------------------------
job: jobID of the job to change status
status: new status string (ClientJobsDAO.STATUS_xxxxx)
useConnecti... | def jobSetStatus(self, jobID, status, useConnectionID=True,):
""" Change the status on the given job
Parameters:
----------------------------------------------------------------
job: jobID of the job to change status
status: new status string (ClientJobsDAO.STATUS_xxxxx)
useConnecti... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1817-L1846 | [
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valid | ClientJobsDAO.jobSetCompleted | Change the status on the given job to completed
Parameters:
----------------------------------------------------------------
job: jobID of the job to mark as completed
completionReason: completionReason string
completionMsg: completionMsg string
useConnectionID: True i... | src/nupic/database/client_jobs_dao.py | def jobSetCompleted(self, jobID, completionReason, completionMsg,
useConnectionID = True):
""" Change the status on the given job to completed
Parameters:
----------------------------------------------------------------
job: jobID of the job to mark as completed
... | def jobSetCompleted(self, jobID, completionReason, completionMsg,
useConnectionID = True):
""" Change the status on the given job to completed
Parameters:
----------------------------------------------------------------
job: jobID of the job to mark as completed
... | [
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valid | ClientJobsDAO.jobCancel | Cancel the given job. This will update the cancel field in the
jobs table and will result in the job being cancelled.
Parameters:
----------------------------------------------------------------
jobID: jobID of the job to mark as completed
to False for hypersearch workers | src/nupic/database/client_jobs_dao.py | def jobCancel(self, jobID):
""" Cancel the given job. This will update the cancel field in the
jobs table and will result in the job being cancelled.
Parameters:
----------------------------------------------------------------
jobID: jobID of the job to mark as completed
to Fal... | def jobCancel(self, jobID):
""" Cancel the given job. This will update the cancel field in the
jobs table and will result in the job being cancelled.
Parameters:
----------------------------------------------------------------
jobID: jobID of the job to mark as completed
to Fal... | [
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valid | ClientJobsDAO.jobGetModelIDs | Fetch all the modelIDs that correspond to a given jobID; empty sequence
if none | src/nupic/database/client_jobs_dao.py | def jobGetModelIDs(self, jobID):
"""Fetch all the modelIDs that correspond to a given jobID; empty sequence
if none"""
rows = self._getMatchingRowsWithRetries(self._models, dict(job_id=jobID),
['model_id'])
return [r[0] for r in rows] | def jobGetModelIDs(self, jobID):
"""Fetch all the modelIDs that correspond to a given jobID; empty sequence
if none"""
rows = self._getMatchingRowsWithRetries(self._models, dict(job_id=jobID),
['model_id'])
return [r[0] for r in rows] | [
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valid | ClientJobsDAO.getActiveJobCountForClientInfo | Return the number of jobs for the given clientInfo and a status that is
not completed. | src/nupic/database/client_jobs_dao.py | def getActiveJobCountForClientInfo(self, clientInfo):
""" Return the number of jobs for the given clientInfo and a status that is
not completed.
"""
with ConnectionFactory.get() as conn:
query = 'SELECT count(job_id) ' \
'FROM %s ' \
'WHERE client_info = %%s ' \
... | def getActiveJobCountForClientInfo(self, clientInfo):
""" Return the number of jobs for the given clientInfo and a status that is
not completed.
"""
with ConnectionFactory.get() as conn:
query = 'SELECT count(job_id) ' \
'FROM %s ' \
'WHERE client_info = %%s ' \
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valid | ClientJobsDAO.getActiveJobCountForClientKey | Return the number of jobs for the given clientKey and a status that is
not completed. | src/nupic/database/client_jobs_dao.py | def getActiveJobCountForClientKey(self, clientKey):
""" Return the number of jobs for the given clientKey and a status that is
not completed.
"""
with ConnectionFactory.get() as conn:
query = 'SELECT count(job_id) ' \
'FROM %s ' \
'WHERE client_key = %%s ' \
... | def getActiveJobCountForClientKey(self, clientKey):
""" Return the number of jobs for the given clientKey and a status that is
not completed.
"""
with ConnectionFactory.get() as conn:
query = 'SELECT count(job_id) ' \
'FROM %s ' \
'WHERE client_key = %%s ' \
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valid | ClientJobsDAO.getActiveJobsForClientInfo | Fetch jobIDs for jobs in the table with optional fields given a
specific clientInfo | src/nupic/database/client_jobs_dao.py | def getActiveJobsForClientInfo(self, clientInfo, fields=[]):
""" Fetch jobIDs for jobs in the table with optional fields given a
specific clientInfo """
# Form the sequence of field name strings that will go into the
# request
dbFields = [self._jobs.pubToDBNameDict[x] for x in fields]
dbFields... | def getActiveJobsForClientInfo(self, clientInfo, fields=[]):
""" Fetch jobIDs for jobs in the table with optional fields given a
specific clientInfo """
# Form the sequence of field name strings that will go into the
# request
dbFields = [self._jobs.pubToDBNameDict[x] for x in fields]
dbFields... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L1952-L1968 | [
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valid | ClientJobsDAO.getFieldsForActiveJobsOfType | Helper function for querying the models table including relevant job
info where the job type matches the specified jobType. Only records for
which there is a matching jobId in both tables is returned, and only the
requested fields are returned in each result, assuming that there is not
a conflict. Thi... | src/nupic/database/client_jobs_dao.py | def getFieldsForActiveJobsOfType(self, jobType, fields=[]):
""" Helper function for querying the models table including relevant job
info where the job type matches the specified jobType. Only records for
which there is a matching jobId in both tables is returned, and only the
requested fields are retu... | def getFieldsForActiveJobsOfType(self, jobType, fields=[]):
""" Helper function for querying the models table including relevant job
info where the job type matches the specified jobType. Only records for
which there is a matching jobId in both tables is returned, and only the
requested fields are retu... | [
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"... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobGetFields | Fetch the values of 1 or more fields from a job record. Here, 'fields'
is a list with the names of the fields to fetch. The names are the public
names of the fields (camelBack, not the lower_case_only form as stored in
the DB).
Parameters:
-----------------------------------------------------------... | src/nupic/database/client_jobs_dao.py | def jobGetFields(self, jobID, fields):
""" Fetch the values of 1 or more fields from a job record. Here, 'fields'
is a list with the names of the fields to fetch. The names are the public
names of the fields (camelBack, not the lower_case_only form as stored in
the DB).
Parameters:
------------... | def jobGetFields(self, jobID, fields):
""" Fetch the values of 1 or more fields from a job record. Here, 'fields'
is a list with the names of the fields to fetch. The names are the public
names of the fields (camelBack, not the lower_case_only form as stored in
the DB).
Parameters:
------------... | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobsGetFields | Fetch the values of 1 or more fields from a sequence of job records.
Here, 'fields' is a sequence (list or tuple) with the names of the fields to
fetch. The names are the public names of the fields (camelBack, not the
lower_case_only form as stored in the DB).
WARNING!!!: The order of the results are N... | src/nupic/database/client_jobs_dao.py | def jobsGetFields(self, jobIDs, fields, requireAll=True):
""" Fetch the values of 1 or more fields from a sequence of job records.
Here, 'fields' is a sequence (list or tuple) with the names of the fields to
fetch. The names are the public names of the fields (camelBack, not the
lower_case_only form as ... | def jobsGetFields(self, jobIDs, fields, requireAll=True):
""" Fetch the values of 1 or more fields from a sequence of job records.
Here, 'fields' is a sequence (list or tuple) with the names of the fields to
fetch. The names are the public names of the fields (camelBack, not the
lower_case_only form as ... | [
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... | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2064-L2094 | [
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"... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobSetFields | Change the values of 1 or more fields in a job. Here, 'fields' is a
dict with the name/value pairs to change. The names are the public names of
the fields (camelBack, not the lower_case_only form as stored in the DB).
This method is for private use by the ClientJobManager only.
Parameters:
--------... | src/nupic/database/client_jobs_dao.py | def jobSetFields(self, jobID, fields, useConnectionID=True,
ignoreUnchanged=False):
""" Change the values of 1 or more fields in a job. Here, 'fields' is a
dict with the name/value pairs to change. The names are the public names of
the fields (camelBack, not the lower_case_only form as st... | def jobSetFields(self, jobID, fields, useConnectionID=True,
ignoreUnchanged=False):
""" Change the values of 1 or more fields in a job. Here, 'fields' is a
dict with the name/value pairs to change. The names are the public names of
the fields (camelBack, not the lower_case_only form as st... | [
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valid | ClientJobsDAO.jobSetFieldIfEqual | Change the value of 1 field in a job to 'newValue', but only if the
current value matches 'curValue'. The 'fieldName' is the public name of
the field (camelBack, not the lower_case_only form as stored in the DB).
This method is used for example by HypersearcWorkers to update the
engWorkerState field pe... | src/nupic/database/client_jobs_dao.py | def jobSetFieldIfEqual(self, jobID, fieldName, newValue, curValue):
""" Change the value of 1 field in a job to 'newValue', but only if the
current value matches 'curValue'. The 'fieldName' is the public name of
the field (camelBack, not the lower_case_only form as stored in the DB).
This method is use... | def jobSetFieldIfEqual(self, jobID, fieldName, newValue, curValue):
""" Change the value of 1 field in a job to 'newValue', but only if the
current value matches 'curValue'. The 'fieldName' is the public name of
the field (camelBack, not the lower_case_only form as stored in the DB).
This method is use... | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.jobIncrementIntField | Incremet the value of 1 field in a job by increment. The 'fieldName' is
the public name of the field (camelBack, not the lower_case_only form as
stored in the DB).
This method is used for example by HypersearcWorkers to update the
engWorkerState field periodically. By qualifying on curValue, it insures... | src/nupic/database/client_jobs_dao.py | def jobIncrementIntField(self, jobID, fieldName, increment=1,
useConnectionID=False):
""" Incremet the value of 1 field in a job by increment. The 'fieldName' is
the public name of the field (camelBack, not the lower_case_only form as
stored in the DB).
This method is used fo... | def jobIncrementIntField(self, jobID, fieldName, increment=1,
useConnectionID=False):
""" Incremet the value of 1 field in a job by increment. The 'fieldName' is
the public name of the field (camelBack, not the lower_case_only form as
stored in the DB).
This method is used fo... | [
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valid | ClientJobsDAO.jobUpdateResults | Update the results string and last-update-time fields of a model.
Parameters:
----------------------------------------------------------------
jobID: job ID of model to modify
results: new results (json dict string) | src/nupic/database/client_jobs_dao.py | def jobUpdateResults(self, jobID, results):
""" Update the results string and last-update-time fields of a model.
Parameters:
----------------------------------------------------------------
jobID: job ID of model to modify
results: new results (json dict string)
"""
with Connection... | def jobUpdateResults(self, jobID, results):
""" Update the results string and last-update-time fields of a model.
Parameters:
----------------------------------------------------------------
jobID: job ID of model to modify
results: new results (json dict string)
"""
with Connection... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2243-L2255 | [
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"' results=%%s '",
"' WHE... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelsClearAll | Delete all models from the models table
Parameters:
---------------------------------------------------------------- | src/nupic/database/client_jobs_dao.py | def modelsClearAll(self):
""" Delete all models from the models table
Parameters:
----------------------------------------------------------------
"""
self._logger.info('Deleting all rows from models table %r',
self.modelsTableName)
with ConnectionFactory.get() as conn:
... | def modelsClearAll(self):
""" Delete all models from the models table
Parameters:
----------------------------------------------------------------
"""
self._logger.info('Deleting all rows from models table %r',
self.modelsTableName)
with ConnectionFactory.get() as conn:
... | [
"Delete",
"all",
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"models",
"table"
] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2260-L2270 | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelInsertAndStart | Insert a new unique model (based on params) into the model table in the
"running" state. This will return two things: whether or not the model was
actually inserted (i.e. that set of params isn't already in the table) and
the modelID chosen for that set of params. Even if the model was not
inserted by t... | src/nupic/database/client_jobs_dao.py | def modelInsertAndStart(self, jobID, params, paramsHash, particleHash=None):
""" Insert a new unique model (based on params) into the model table in the
"running" state. This will return two things: whether or not the model was
actually inserted (i.e. that set of params isn't already in the table) and
t... | def modelInsertAndStart(self, jobID, params, paramsHash, particleHash=None):
""" Insert a new unique model (based on params) into the model table in the
"running" state. This will return two things: whether or not the model was
actually inserted (i.e. that set of params isn't already in the table) and
t... | [
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... | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2274-L2411 | [
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"paramsHash",
"# Normalize hashes",... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelsInfo | Get ALL info for a set of models
WARNING!!!: The order of the results are NOT necessarily in the same order as
the order of the model IDs passed in!!!
Parameters:
----------------------------------------------------------------
modelIDs: list of model IDs
retval: list of nametuples con... | src/nupic/database/client_jobs_dao.py | def modelsInfo(self, modelIDs):
""" Get ALL info for a set of models
WARNING!!!: The order of the results are NOT necessarily in the same order as
the order of the model IDs passed in!!!
Parameters:
----------------------------------------------------------------
modelIDs: list of model IDs... | def modelsInfo(self, modelIDs):
""" Get ALL info for a set of models
WARNING!!!: The order of the results are NOT necessarily in the same order as
the order of the model IDs passed in!!!
Parameters:
----------------------------------------------------------------
modelIDs: list of model IDs... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2415-L2442 | [
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valid | ClientJobsDAO.modelsGetFields | Fetch the values of 1 or more fields from a sequence of model records.
Here, 'fields' is a list with the names of the fields to fetch. The names
are the public names of the fields (camelBack, not the lower_case_only form
as stored in the DB).
WARNING!!!: The order of the results are NOT necessarily in ... | src/nupic/database/client_jobs_dao.py | def modelsGetFields(self, modelIDs, fields):
""" Fetch the values of 1 or more fields from a sequence of model records.
Here, 'fields' is a list with the names of the fields to fetch. The names
are the public names of the fields (camelBack, not the lower_case_only form
as stored in the DB).
WARNING... | def modelsGetFields(self, modelIDs, fields):
""" Fetch the values of 1 or more fields from a sequence of model records.
Here, 'fields' is a list with the names of the fields to fetch. The names
are the public names of the fields (camelBack, not the lower_case_only form
as stored in the DB).
WARNING... | [
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... | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2446-L2488 | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelsGetFieldsForJob | Gets the specified fields for all the models for a single job. This is
similar to modelsGetFields
Parameters:
----------------------------------------------------------------
jobID: jobID for the models to be searched
fields: A list of fields to return
ignoreKilled: ... | src/nupic/database/client_jobs_dao.py | def modelsGetFieldsForJob(self, jobID, fields, ignoreKilled=False):
""" Gets the specified fields for all the models for a single job. This is
similar to modelsGetFields
Parameters:
----------------------------------------------------------------
jobID: jobID for the models to be searc... | def modelsGetFieldsForJob(self, jobID, fields, ignoreKilled=False):
""" Gets the specified fields for all the models for a single job. This is
similar to modelsGetFields
Parameters:
----------------------------------------------------------------
jobID: jobID for the models to be searc... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2493-L2546 | [
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valid | ClientJobsDAO.modelsGetFieldsForCheckpointed | Gets fields from all models in a job that have been checkpointed. This is
used to figure out whether or not a new model should be checkpointed.
Parameters:
-----------------------------------------------------------------------
jobID: The jobID for the models to be searched
field... | src/nupic/database/client_jobs_dao.py | def modelsGetFieldsForCheckpointed(self, jobID, fields):
"""
Gets fields from all models in a job that have been checkpointed. This is
used to figure out whether or not a new model should be checkpointed.
Parameters:
-----------------------------------------------------------------------
jobID:... | def modelsGetFieldsForCheckpointed(self, jobID, fields):
"""
Gets fields from all models in a job that have been checkpointed. This is
used to figure out whether or not a new model should be checkpointed.
Parameters:
-----------------------------------------------------------------------
jobID:... | [
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valid | ClientJobsDAO.modelSetFields | Change the values of 1 or more fields in a model. Here, 'fields' is a
dict with the name/value pairs to change. The names are the public names of
the fields (camelBack, not the lower_case_only form as stored in the DB).
Parameters:
----------------------------------------------------------------
jo... | src/nupic/database/client_jobs_dao.py | def modelSetFields(self, modelID, fields, ignoreUnchanged = False):
""" Change the values of 1 or more fields in a model. Here, 'fields' is a
dict with the name/value pairs to change. The names are the public names of
the fields (camelBack, not the lower_case_only form as stored in the DB).
Parameters:... | def modelSetFields(self, modelID, fields, ignoreUnchanged = False):
""" Change the values of 1 or more fields in a model. Here, 'fields' is a
dict with the name/value pairs to change. The names are the public names of
the fields (camelBack, not the lower_case_only form as stored in the DB).
Parameters:... | [
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"the... | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2589-L2632 | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelsGetParams | Get the params and paramsHash for a set of models.
WARNING!!!: The order of the results are NOT necessarily in the same order as
the order of the model IDs passed in!!!
Parameters:
----------------------------------------------------------------
modelIDs: list of model IDs
retval: list... | src/nupic/database/client_jobs_dao.py | def modelsGetParams(self, modelIDs):
""" Get the params and paramsHash for a set of models.
WARNING!!!: The order of the results are NOT necessarily in the same order as
the order of the model IDs passed in!!!
Parameters:
----------------------------------------------------------------
modelID... | def modelsGetParams(self, modelIDs):
""" Get the params and paramsHash for a set of models.
WARNING!!!: The order of the results are NOT necessarily in the same order as
the order of the model IDs passed in!!!
Parameters:
----------------------------------------------------------------
modelID... | [
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valid | ClientJobsDAO.modelsGetResultAndStatus | Get the results string and other status fields for a set of models.
WARNING!!!: The order of the results are NOT necessarily in the same order
as the order of the model IDs passed in!!!
For each model, this returns a tuple containing:
(modelID, results, status, updateCounter, numRecords, completionRe... | src/nupic/database/client_jobs_dao.py | def modelsGetResultAndStatus(self, modelIDs):
""" Get the results string and other status fields for a set of models.
WARNING!!!: The order of the results are NOT necessarily in the same order
as the order of the model IDs passed in!!!
For each model, this returns a tuple containing:
(modelID, re... | def modelsGetResultAndStatus(self, modelIDs):
""" Get the results string and other status fields for a set of models.
WARNING!!!: The order of the results are NOT necessarily in the same order
as the order of the model IDs passed in!!!
For each model, this returns a tuple containing:
(modelID, re... | [
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"(",... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelsGetUpdateCounters | Return info on all of the models that are in already in the models
table for a given job. For each model, this returns a tuple
containing: (modelID, updateCounter).
Note that we don't return the results for all models, since the results
string could be quite large. The information we are returning is
... | src/nupic/database/client_jobs_dao.py | def modelsGetUpdateCounters(self, jobID):
""" Return info on all of the models that are in already in the models
table for a given job. For each model, this returns a tuple
containing: (modelID, updateCounter).
Note that we don't return the results for all models, since the results
string could be ... | def modelsGetUpdateCounters(self, jobID):
""" Return info on all of the models that are in already in the models
table for a given job. For each model, this returns a tuple
containing: (modelID, updateCounter).
Note that we don't return the results for all models, since the results
string could be ... | [
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... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelUpdateResults | Update the results string, and/or num_records fields of
a model. This will fail if the model does not currently belong to this
client (connection_id doesn't match).
Parameters:
----------------------------------------------------------------
modelID: model ID of model to modify
results: ... | src/nupic/database/client_jobs_dao.py | def modelUpdateResults(self, modelID, results=None, metricValue =None,
numRecords=None):
""" Update the results string, and/or num_records fields of
a model. This will fail if the model does not currently belong to this
client (connection_id doesn't match).
Parameters:
----... | def modelUpdateResults(self, modelID, results=None, metricValue =None,
numRecords=None):
""" Update the results string, and/or num_records fields of
a model. This will fail if the model does not currently belong to this
client (connection_id doesn't match).
Parameters:
----... | [
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valid | ClientJobsDAO.modelSetCompleted | Mark a model as completed, with the given completionReason and
completionMsg. This will fail if the model does not currently belong to this
client (connection_id doesn't match).
Parameters:
----------------------------------------------------------------
modelID: model ID of model to mo... | src/nupic/database/client_jobs_dao.py | def modelSetCompleted(self, modelID, completionReason, completionMsg,
cpuTime=0, useConnectionID=True):
""" Mark a model as completed, with the given completionReason and
completionMsg. This will fail if the model does not currently belong to this
client (connection_id doesn't match)... | def modelSetCompleted(self, modelID, completionReason, completionMsg,
cpuTime=0, useConnectionID=True):
""" Mark a model as completed, with the given completionReason and
completionMsg. This will fail if the model does not currently belong to this
client (connection_id doesn't match)... | [
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... | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2782-L2825 | [
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"=... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | ClientJobsDAO.modelAdoptNextOrphan | Look through the models table for an orphaned model, which is a model
that is not completed yet, whose _eng_last_update_time is more than
maxUpdateInterval seconds ago.
If one is found, change its _eng_worker_conn_id to the current worker's
and return the model id.
Parameters:
----------------... | src/nupic/database/client_jobs_dao.py | def modelAdoptNextOrphan(self, jobId, maxUpdateInterval):
""" Look through the models table for an orphaned model, which is a model
that is not completed yet, whose _eng_last_update_time is more than
maxUpdateInterval seconds ago.
If one is found, change its _eng_worker_conn_id to the current worker's
... | def modelAdoptNextOrphan(self, jobId, maxUpdateInterval):
""" Look through the models table for an orphaned model, which is a model
that is not completed yet, whose _eng_last_update_time is more than
maxUpdateInterval seconds ago.
If one is found, change its _eng_worker_conn_id to the current worker's
... | [
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"whose",
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/database/client_jobs_dao.py#L2829-L2907 | [
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":"... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | profileSP | profiling performance of SpatialPooler (SP)
using the python cProfile module and ordered by cumulative time,
see how to run on command-line above.
@param spClass implementation of SP (cpp, py, ..)
@param spDim number of columns in SP (in 1D, for 2D see colDim in code)
@param nRuns number of calls of the prof... | scripts/profiling/sp_profile.py | def profileSP(spClass, spDim, nRuns):
"""
profiling performance of SpatialPooler (SP)
using the python cProfile module and ordered by cumulative time,
see how to run on command-line above.
@param spClass implementation of SP (cpp, py, ..)
@param spDim number of columns in SP (in 1D, for 2D see colDim in co... | def profileSP(spClass, spDim, nRuns):
"""
profiling performance of SpatialPooler (SP)
using the python cProfile module and ordered by cumulative time,
see how to run on command-line above.
@param spClass implementation of SP (cpp, py, ..)
@param spDim number of columns in SP (in 1D, for 2D see colDim in co... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/scripts/profiling/sp_profile.py#L31-L79 | [
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"# create SP instance to me... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | KNNClassifierRegion.getSpec | Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getSpec`. | src/nupic/regions/knn_classifier_region.py | def getSpec(cls):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getSpec`.
"""
ns = dict(
description=KNNClassifierRegion.__doc__,
singleNodeOnly=True,
inputs=dict(
categoryIn=dict(
description='Vector of zero or more category indices for this... | def getSpec(cls):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getSpec`.
"""
ns = dict(
description=KNNClassifierRegion.__doc__,
singleNodeOnly=True,
inputs=dict(
categoryIn=dict(
description='Vector of zero or more category indices for this... | [
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"PyRegion",
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/regions/knn_classifier_region.py#L82-L489 | [
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valid | KNNClassifierRegion._initEphemerals | Initialize attributes that are not saved with the checkpoint. | src/nupic/regions/knn_classifier_region.py | def _initEphemerals(self):
"""
Initialize attributes that are not saved with the checkpoint.
"""
self._firstComputeCall = True
self._accuracy = None
self._protoScores = None
self._categoryDistances = None
self._knn = knn_classifier.KNNClassifier(**self.knnParams)
for x in ('_partit... | def _initEphemerals(self):
"""
Initialize attributes that are not saved with the checkpoint.
"""
self._firstComputeCall = True
self._accuracy = None
self._protoScores = None
self._categoryDistances = None
self._knn = knn_classifier.KNNClassifier(**self.knnParams)
for x in ('_partit... | [
"Initialize",
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"are",
"not",
"saved",
"with",
"the",
"checkpoint",
"."
] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/regions/knn_classifier_region.py#L605-L619 | [
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valid | KNNClassifierRegion.getParameter | Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getParameter`. | src/nupic/regions/knn_classifier_region.py | def getParameter(self, name, index=-1):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getParameter`.
"""
if name == "patternCount":
return self._knn._numPatterns
elif name == "patternMatrix":
return self._getPatternMatrix()
elif name == "k":
return self._knn.k
... | def getParameter(self, name, index=-1):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getParameter`.
"""
if name == "patternCount":
return self._knn._numPatterns
elif name == "patternMatrix":
return self._getPatternMatrix()
elif name == "k":
return self._knn.k
... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/regions/knn_classifier_region.py#L704-L756 | [
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valid | KNNClassifierRegion.setParameter | Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.setParameter`. | src/nupic/regions/knn_classifier_region.py | def setParameter(self, name, index, value):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.setParameter`.
"""
if name == "learningMode":
self.learningMode = bool(int(value))
self._epoch = 0
elif name == "inferenceMode":
self._epoch = 0
if int(value) and not sel... | def setParameter(self, name, index, value):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.setParameter`.
"""
if name == "learningMode":
self.learningMode = bool(int(value))
self._epoch = 0
elif name == "inferenceMode":
self._epoch = 0
if int(value) and not sel... | [
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valid | KNNClassifierRegion.enableTap | Begin writing output tap files.
:param tapPath: (string) base name of the output tap files to write. | src/nupic/regions/knn_classifier_region.py | def enableTap(self, tapPath):
"""
Begin writing output tap files.
:param tapPath: (string) base name of the output tap files to write.
"""
self._tapFileIn = open(tapPath + '.in', 'w')
self._tapFileOut = open(tapPath + '.out', 'w') | def enableTap(self, tapPath):
"""
Begin writing output tap files.
:param tapPath: (string) base name of the output tap files to write.
"""
self._tapFileIn = open(tapPath + '.in', 'w')
self._tapFileOut = open(tapPath + '.out', 'w') | [
"Begin",
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"."
] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/regions/knn_classifier_region.py#L807-L815 | [
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valid | KNNClassifierRegion.disableTap | Disable writing of output tap files. | src/nupic/regions/knn_classifier_region.py | def disableTap(self):
"""
Disable writing of output tap files.
"""
if self._tapFileIn is not None:
self._tapFileIn.close()
self._tapFileIn = None
if self._tapFileOut is not None:
self._tapFileOut.close()
self._tapFileOut = None | def disableTap(self):
"""
Disable writing of output tap files.
"""
if self._tapFileIn is not None:
self._tapFileIn.close()
self._tapFileIn = None
if self._tapFileOut is not None:
self._tapFileOut.close()
self._tapFileOut = None | [
"Disable",
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"."
] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/regions/knn_classifier_region.py#L818-L828 | [
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"... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | KNNClassifierRegion.handleLogInput | Write inputs to output tap file.
:param inputs: (iter) some inputs. | src/nupic/regions/knn_classifier_region.py | def handleLogInput(self, inputs):
"""
Write inputs to output tap file.
:param inputs: (iter) some inputs.
"""
if self._tapFileIn is not None:
for input in inputs:
for k in range(len(input)):
print >> self._tapFileIn, input[k],
print >> self._tapFileIn | def handleLogInput(self, inputs):
"""
Write inputs to output tap file.
:param inputs: (iter) some inputs.
"""
if self._tapFileIn is not None:
for input in inputs:
for k in range(len(input)):
print >> self._tapFileIn, input[k],
print >> self._tapFileIn | [
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valid | KNNClassifierRegion.handleLogOutput | Write outputs to output tap file.
:param outputs: (iter) some outputs. | src/nupic/regions/knn_classifier_region.py | def handleLogOutput(self, output):
"""
Write outputs to output tap file.
:param outputs: (iter) some outputs.
"""
#raise Exception('MULTI-LINE DUMMY\nMULTI-LINE DUMMY')
if self._tapFileOut is not None:
for k in range(len(output)):
print >> self._tapFileOut, output[k],
print ... | def handleLogOutput(self, output):
"""
Write outputs to output tap file.
:param outputs: (iter) some outputs.
"""
#raise Exception('MULTI-LINE DUMMY\nMULTI-LINE DUMMY')
if self._tapFileOut is not None:
for k in range(len(output)):
print >> self._tapFileOut, output[k],
print ... | [
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valid | KNNClassifierRegion._storeSample | Store a training sample and associated category label | src/nupic/regions/knn_classifier_region.py | def _storeSample(self, inputVector, trueCatIndex, partition=0):
"""
Store a training sample and associated category label
"""
# If this is the first sample, then allocate a numpy array
# of the appropriate size in which to store all samples.
if self._samples is None:
self._samples = numpy... | def _storeSample(self, inputVector, trueCatIndex, partition=0):
"""
Store a training sample and associated category label
"""
# If this is the first sample, then allocate a numpy array
# of the appropriate size in which to store all samples.
if self._samples is None:
self._samples = numpy... | [
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valid | KNNClassifierRegion.compute | Process one input sample. This method is called by the runtime engine.
.. note:: the number of input categories may vary, but the array size is
fixed to the max number of categories allowed (by a lower region), so
"unused" indices of the input category array are filled with -1s.
TODO: confusio... | src/nupic/regions/knn_classifier_region.py | def compute(self, inputs, outputs):
"""
Process one input sample. This method is called by the runtime engine.
.. note:: the number of input categories may vary, but the array size is
fixed to the max number of categories allowed (by a lower region), so
"unused" indices of the input categor... | def compute(self, inputs, outputs):
"""
Process one input sample. This method is called by the runtime engine.
.. note:: the number of input categories may vary, but the array size is
fixed to the max number of categories allowed (by a lower region), so
"unused" indices of the input categor... | [
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valid | KNNClassifierRegion._finishLearning | Does nothing. Kept here for API compatibility | src/nupic/regions/knn_classifier_region.py | def _finishLearning(self):
"""Does nothing. Kept here for API compatibility """
if self._doSphering:
self._finishSphering()
self._knn.finishLearning()
# Compute leave-one-out validation accuracy if
# we actually received non-trivial partition info
self._accuracy = None | def _finishLearning(self):
"""Does nothing. Kept here for API compatibility """
if self._doSphering:
self._finishSphering()
self._knn.finishLearning()
# Compute leave-one-out validation accuracy if
# we actually received non-trivial partition info
self._accuracy = None | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/regions/knn_classifier_region.py#L1142-L1151 | [
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valid | KNNClassifierRegion._finishSphering | Compute normalization constants for each feature dimension
based on the collected training samples. Then normalize our
training samples using these constants (so that each input
dimension has mean and variance of zero and one, respectively.)
Then feed these "sphered" training samples into the underlyin... | src/nupic/regions/knn_classifier_region.py | def _finishSphering(self):
"""
Compute normalization constants for each feature dimension
based on the collected training samples. Then normalize our
training samples using these constants (so that each input
dimension has mean and variance of zero and one, respectively.)
Then feed these "spher... | def _finishSphering(self):
"""
Compute normalization constants for each feature dimension
based on the collected training samples. Then normalize our
training samples using these constants (so that each input
dimension has mean and variance of zero and one, respectively.)
Then feed these "spher... | [
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valid | KNNClassifierRegion.getOutputElementCount | Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getOutputElementCount`. | src/nupic/regions/knn_classifier_region.py | def getOutputElementCount(self, name):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getOutputElementCount`.
"""
if name == 'categoriesOut':
return self.maxCategoryCount
elif name == 'categoryProbabilitiesOut':
return self.maxCategoryCount
elif name == 'bestPrototypeI... | def getOutputElementCount(self, name):
"""
Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getOutputElementCount`.
"""
if name == 'categoriesOut':
return self.maxCategoryCount
elif name == 'categoryProbabilitiesOut':
return self.maxCategoryCount
elif name == 'bestPrototypeI... | [
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valid | generateStats | Generate requested statistics for a dataset and cache to a file.
If filename is None, then don't cache to a file | src/nupic/data/stats.py | def generateStats(filename, statsInfo, maxSamples = None, filters=[], cache=True):
"""Generate requested statistics for a dataset and cache to a file.
If filename is None, then don't cache to a file"""
# Sanity checking
if not isinstance(statsInfo, dict):
raise RuntimeError("statsInfo must be a dict -- "
... | def generateStats(filename, statsInfo, maxSamples = None, filters=[], cache=True):
"""Generate requested statistics for a dataset and cache to a file.
If filename is None, then don't cache to a file"""
# Sanity checking
if not isinstance(statsInfo, dict):
raise RuntimeError("statsInfo must be a dict -- "
... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/data/stats.py#L123-L202 | [
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valid | getScalarMetricWithTimeOfDayAnomalyParams | Return a dict that can be used to create an anomaly model via
:meth:`nupic.frameworks.opf.model_factory.ModelFactory.create`.
Example:
.. code-block:: python
from nupic.frameworks.opf.model_factory import ModelFactory
from nupic.frameworks.opf.common_models.cluster_params import (
getScalarMetric... | src/nupic/frameworks/opf/common_models/cluster_params.py | def getScalarMetricWithTimeOfDayAnomalyParams(metricData,
minVal=None,
maxVal=None,
minResolution=None,
tmImplementation = "cpp"):
"""... | def getScalarMetricWithTimeOfDayAnomalyParams(metricData,
minVal=None,
maxVal=None,
minResolution=None,
tmImplementation = "cpp"):
"""... | [
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valid | _rangeGen | Return reasonable min/max values to use given the data. | src/nupic/frameworks/opf/common_models/cluster_params.py | def _rangeGen(data, std=1):
"""
Return reasonable min/max values to use given the data.
"""
dataStd = np.std(data)
if dataStd == 0:
dataStd = 1
minval = np.min(data) - std * dataStd
maxval = np.max(data) + std * dataStd
return minval, maxval | def _rangeGen(data, std=1):
"""
Return reasonable min/max values to use given the data.
"""
dataStd = np.std(data)
if dataStd == 0:
dataStd = 1
minval = np.min(data) - std * dataStd
maxval = np.max(data) + std * dataStd
return minval, maxval | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/frameworks/opf/common_models/cluster_params.py#L120-L129 | [
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"da... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | _fixupRandomEncoderParams | Given model params, figure out the correct parameters for the
RandomDistributed encoder. Modifies params in place. | src/nupic/frameworks/opf/common_models/cluster_params.py | def _fixupRandomEncoderParams(params, minVal, maxVal, minResolution):
"""
Given model params, figure out the correct parameters for the
RandomDistributed encoder. Modifies params in place.
"""
encodersDict = (
params["modelConfig"]["modelParams"]["sensorParams"]["encoders"]
)
for encoder in encodersD... | def _fixupRandomEncoderParams(params, minVal, maxVal, minResolution):
"""
Given model params, figure out the correct parameters for the
RandomDistributed encoder. Modifies params in place.
"""
encodersDict = (
params["modelConfig"]["modelParams"]["sensorParams"]["encoders"]
)
for encoder in encodersD... | [
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"]",... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | MonitoredTemporalMemory.read | Intercepts TemporalMemory deserialization request in order to initialize
`TemporalMemoryMonitorMixin` state
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance | src/nupic/algorithms/backtracking_tm_shim.py | def read(cls, proto):
"""
Intercepts TemporalMemory deserialization request in order to initialize
`TemporalMemoryMonitorMixin` state
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance
"""
tm = super(TemporalMemoryMonitorMixin, cls).read(... | def read(cls, proto):
"""
Intercepts TemporalMemory deserialization request in order to initialize
`TemporalMemoryMonitorMixin` state
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance
"""
tm = super(TemporalMemoryMonitorMixin, cls).read(... | [
"Intercepts",
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"request",
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"order",
"to",
"initialize",
"TemporalMemoryMonitorMixin",
"state"
] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/backtracking_tm_shim.py#L42-L59 | [
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"_... | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | TMShimMixin.read | Intercepts TemporalMemory deserialization request in order to initialize
`self.infActiveState`
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance | src/nupic/algorithms/backtracking_tm_shim.py | def read(cls, proto):
"""
Intercepts TemporalMemory deserialization request in order to initialize
`self.infActiveState`
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance
"""
tm = super(TMShimMixin, cls).read(proto)
tm.infActiveState... | def read(cls, proto):
"""
Intercepts TemporalMemory deserialization request in order to initialize
`self.infActiveState`
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance
"""
tm = super(TMShimMixin, cls).read(proto)
tm.infActiveState... | [
"Intercepts",
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"initialize",
"self",
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/backtracking_tm_shim.py#L109-L120 | [
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] | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
valid | TMShimMixin.topDownCompute | (From `backtracking_tm.py`)
Top-down compute - generate expected input given output of the TM
@param topDownIn top down input from the level above us
@returns best estimate of the TM input that would have generated bottomUpOut. | src/nupic/algorithms/backtracking_tm_shim.py | def topDownCompute(self, topDownIn=None):
"""
(From `backtracking_tm.py`)
Top-down compute - generate expected input given output of the TM
@param topDownIn top down input from the level above us
@returns best estimate of the TM input that would have generated bottomUpOut.
"""
output = num... | def topDownCompute(self, topDownIn=None):
"""
(From `backtracking_tm.py`)
Top-down compute - generate expected input given output of the TM
@param topDownIn top down input from the level above us
@returns best estimate of the TM input that would have generated bottomUpOut.
"""
output = num... | [
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valid | MonitoredTMShim.read | Intercepts TemporalMemory deserialization request in order to initialize
`self.infActiveState`
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance | src/nupic/algorithms/backtracking_tm_shim.py | def read(cls, proto):
"""
Intercepts TemporalMemory deserialization request in order to initialize
`self.infActiveState`
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance
"""
tm = super(MonitoredTMShim, cls).read(proto)
tm.infActiveS... | def read(cls, proto):
"""
Intercepts TemporalMemory deserialization request in order to initialize
`self.infActiveState`
@param proto (DynamicStructBuilder) Proto object
@return (TemporalMemory) TemporalMemory shim instance
"""
tm = super(MonitoredTMShim, cls).read(proto)
tm.infActiveS... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/backtracking_tm_shim.py#L242-L253 | [
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valid | MonitoredTMShim.compute | (From `backtracking_tm.py`)
Handle one compute, possibly learning.
@param bottomUpInput The bottom-up input, typically from a spatial pooler
@param enableLearn If true, perform learning
@param computeInfOutput If None, default behavior is to disable the inference
... | src/nupic/algorithms/backtracking_tm_shim.py | def compute(self, bottomUpInput, enableLearn, computeInfOutput=None):
"""
(From `backtracking_tm.py`)
Handle one compute, possibly learning.
@param bottomUpInput The bottom-up input, typically from a spatial pooler
@param enableLearn If true, perform learning
@param computeInfOutput ... | def compute(self, bottomUpInput, enableLearn, computeInfOutput=None):
"""
(From `backtracking_tm.py`)
Handle one compute, possibly learning.
@param bottomUpInput The bottom-up input, typically from a spatial pooler
@param enableLearn If true, perform learning
@param computeInfOutput ... | [
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valid | pickByDistribution | Pick a value according to the provided distribution.
Example:
::
pickByDistribution([.2, .1])
Returns 0 two thirds of the time and 1 one third of the time.
:param distribution: Probability distribution. Need not be normalized.
:param r: Instance of random.Random. Uses the system instance if one is
... | src/nupic/math/stats.py | def pickByDistribution(distribution, r=None):
"""
Pick a value according to the provided distribution.
Example:
::
pickByDistribution([.2, .1])
Returns 0 two thirds of the time and 1 one third of the time.
:param distribution: Probability distribution. Need not be normalized.
:param r: Instance o... | def pickByDistribution(distribution, r=None):
"""
Pick a value according to the provided distribution.
Example:
::
pickByDistribution([.2, .1])
Returns 0 two thirds of the time and 1 one third of the time.
:param distribution: Probability distribution. Need not be normalized.
:param r: Instance o... | [
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valid | Indicator | Returns an array of length size and type dtype that is everywhere 0,
except in the index in pos.
:param pos: (int) specifies the position of the one entry that will be set.
:param size: (int) The total size of the array to be returned.
:param dtype: The element type (compatible with NumPy array())
of ... | src/nupic/math/stats.py | def Indicator(pos, size, dtype):
"""
Returns an array of length size and type dtype that is everywhere 0,
except in the index in pos.
:param pos: (int) specifies the position of the one entry that will be set.
:param size: (int) The total size of the array to be returned.
:param dtype: The element type (co... | def Indicator(pos, size, dtype):
"""
Returns an array of length size and type dtype that is everywhere 0,
except in the index in pos.
:param pos: (int) specifies the position of the one entry that will be set.
:param size: (int) The total size of the array to be returned.
:param dtype: The element type (co... | [
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] | numenta/nupic | python | https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/math/stats.py#L64-L77 | [
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] | 5922fafffdccc8812e72b3324965ad2f7d4bbdad |
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