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valid
read_fakelc
This just reads a pickled fake LC. Parameters ---------- fakelcfile : str The fake LC file to read. Returns ------- dict This returns an lcdict.
astrobase/fakelcs/recovery.py
def read_fakelc(fakelcfile): ''' This just reads a pickled fake LC. Parameters ---------- fakelcfile : str The fake LC file to read. Returns ------- dict This returns an lcdict. ''' try: with open(fakelcfile,'rb') as infd: lcdict = pickle...
def read_fakelc(fakelcfile): ''' This just reads a pickled fake LC. Parameters ---------- fakelcfile : str The fake LC file to read. Returns ------- dict This returns an lcdict. ''' try: with open(fakelcfile,'rb') as infd: lcdict = pickle...
[ "This", "just", "reads", "a", "pickled", "fake", "LC", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L84-L109
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2922a14619d183fb28005fa7d02027ac436f2265
valid
get_varfeatures
This runs `lcproc.lcvfeatures.parallel_varfeatures` on fake LCs in `simbasedir`. Parameters ---------- simbasedir : str The directory containing the fake LCs to process. mindet : int The minimum number of detections needed to accept an LC and process it. nworkers : int or Non...
astrobase/fakelcs/recovery.py
def get_varfeatures(simbasedir, mindet=1000, nworkers=None): '''This runs `lcproc.lcvfeatures.parallel_varfeatures` on fake LCs in `simbasedir`. Parameters ---------- simbasedir : str The directory containing the fake LCs to process. mindet : in...
def get_varfeatures(simbasedir, mindet=1000, nworkers=None): '''This runs `lcproc.lcvfeatures.parallel_varfeatures` on fake LCs in `simbasedir`. Parameters ---------- simbasedir : str The directory containing the fake LCs to process. mindet : in...
[ "This", "runs", "lcproc", ".", "lcvfeatures", ".", "parallel_varfeatures", "on", "fake", "LCs", "in", "simbasedir", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L117-L186
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2922a14619d183fb28005fa7d02027ac436f2265
valid
precision
This calculates precision. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfp : int The number of false positives. Returns ------- float The precision calculated using `ntp/(ntp + nfp)`.
astrobase/fakelcs/recovery.py
def precision(ntp, nfp): ''' This calculates precision. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfp : int The number of false positives. Returns ------- float The precision calc...
def precision(ntp, nfp): ''' This calculates precision. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfp : int The number of false positives. Returns ------- float The precision calc...
[ "This", "calculates", "precision", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L190-L216
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2922a14619d183fb28005fa7d02027ac436f2265
valid
recall
This calculates recall. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfn : int The number of false negatives. Returns ------- float The precision calculated using `ntp/(ntp + nfn)`.
astrobase/fakelcs/recovery.py
def recall(ntp, nfn): ''' This calculates recall. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfn : int The number of false negatives. Returns ------- float The precision calculated...
def recall(ntp, nfn): ''' This calculates recall. https://en.wikipedia.org/wiki/Precision_and_recall Parameters ---------- ntp : int The number of true positives. nfn : int The number of false negatives. Returns ------- float The precision calculated...
[ "This", "calculates", "recall", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L220-L246
[ "def", "recall", "(", "ntp", ",", "nfn", ")", ":", "if", "(", "ntp", "+", "nfn", ")", ">", "0", ":", "return", "ntp", "/", "(", "ntp", "+", "nfn", ")", "else", ":", "return", "np", ".", "nan" ]
2922a14619d183fb28005fa7d02027ac436f2265
valid
matthews_correl_coeff
This calculates the Matthews correlation coefficent. https://en.wikipedia.org/wiki/Matthews_correlation_coefficient Parameters ---------- ntp : int The number of true positives. ntn : int The number of true negatives nfp : int The number of false positives. nfn ...
astrobase/fakelcs/recovery.py
def matthews_correl_coeff(ntp, ntn, nfp, nfn): ''' This calculates the Matthews correlation coefficent. https://en.wikipedia.org/wiki/Matthews_correlation_coefficient Parameters ---------- ntp : int The number of true positives. ntn : int The number of true negatives ...
def matthews_correl_coeff(ntp, ntn, nfp, nfn): ''' This calculates the Matthews correlation coefficent. https://en.wikipedia.org/wiki/Matthews_correlation_coefficient Parameters ---------- ntp : int The number of true positives. ntn : int The number of true negatives ...
[ "This", "calculates", "the", "Matthews", "correlation", "coefficent", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L250-L285
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2922a14619d183fb28005fa7d02027ac436f2265
valid
get_recovered_variables_for_magbin
This runs variability selection for the given magbinmedian. To generate a full recovery matrix over all magnitude bins, run this function for each magbin over the specified stetson_stdev_min and inveta_stdev_min grid. Parameters ---------- simbasedir : str The input directory of fake ...
astrobase/fakelcs/recovery.py
def get_recovered_variables_for_magbin(simbasedir, magbinmedian, stetson_stdev_min=2.0, inveta_stdev_min=2.0, iqr_stdev_min=2.0, ...
def get_recovered_variables_for_magbin(simbasedir, magbinmedian, stetson_stdev_min=2.0, inveta_stdev_min=2.0, iqr_stdev_min=2.0, ...
[ "This", "runs", "variability", "selection", "for", "the", "given", "magbinmedian", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L293-L657
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2922a14619d183fb28005fa7d02027ac436f2265
valid
magbin_varind_gridsearch_worker
This is a parallel grid search worker for the function below.
astrobase/fakelcs/recovery.py
def magbin_varind_gridsearch_worker(task): ''' This is a parallel grid search worker for the function below. ''' simbasedir, gridpoint, magbinmedian = task try: res = get_recovered_variables_for_magbin(simbasedir, magbinmedian, ...
def magbin_varind_gridsearch_worker(task): ''' This is a parallel grid search worker for the function below. ''' simbasedir, gridpoint, magbinmedian = task try: res = get_recovered_variables_for_magbin(simbasedir, magbinmedian, ...
[ "This", "is", "a", "parallel", "grid", "search", "worker", "for", "the", "function", "below", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L661-L679
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2922a14619d183fb28005fa7d02027ac436f2265
valid
variable_index_gridsearch_magbin
This runs a variable index grid search per magbin. For each magbin, this does a grid search using the stetson and inveta ranges provided and tries to optimize the Matthews Correlation Coefficient (best value is +1.0), indicating the best possible separation of variables vs. nonvariables. The thresholds...
astrobase/fakelcs/recovery.py
def variable_index_gridsearch_magbin(simbasedir, stetson_stdev_range=(1.0,20.0), inveta_stdev_range=(1.0,20.0), iqr_stdev_range=(1.0,20.0), ngridpoints=32, ...
def variable_index_gridsearch_magbin(simbasedir, stetson_stdev_range=(1.0,20.0), inveta_stdev_range=(1.0,20.0), iqr_stdev_range=(1.0,20.0), ngridpoints=32, ...
[ "This", "runs", "a", "variable", "index", "grid", "search", "per", "magbin", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L683-L831
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2922a14619d183fb28005fa7d02027ac436f2265
valid
plot_varind_gridsearch_magbin_results
This plots the gridsearch results from `variable_index_gridsearch_magbin`. Parameters ---------- gridsearch_results : dict This is the dict produced by `variable_index_gridsearch_magbin` above. Returns ------- dict The returned dict contains filenames of the recovery rate plo...
astrobase/fakelcs/recovery.py
def plot_varind_gridsearch_magbin_results(gridsearch_results): '''This plots the gridsearch results from `variable_index_gridsearch_magbin`. Parameters ---------- gridsearch_results : dict This is the dict produced by `variable_index_gridsearch_magbin` above. Returns ------- dict...
def plot_varind_gridsearch_magbin_results(gridsearch_results): '''This plots the gridsearch results from `variable_index_gridsearch_magbin`. Parameters ---------- gridsearch_results : dict This is the dict produced by `variable_index_gridsearch_magbin` above. Returns ------- dict...
[ "This", "plots", "the", "gridsearch", "results", "from", "variable_index_gridsearch_magbin", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L835-L1430
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2922a14619d183fb28005fa7d02027ac436f2265
valid
run_periodfinding
This runs periodfinding using several period-finders on a collection of fake LCs. As a rough benchmark, 25000 fake LCs with 10000--50000 points per LC take about 26 days in total to run on an invocation of this function using GLS+PDM+BLS and 10 periodworkers and 4 controlworkers (so all 40 'cores') on ...
astrobase/fakelcs/recovery.py
def run_periodfinding(simbasedir, pfmethods=('gls','pdm','bls'), pfkwargs=({},{},{'startp':1.0,'maxtransitduration':0.3}), getblssnr=False, sigclip=5.0, nperiodworkers=10, ncontrolworkers=...
def run_periodfinding(simbasedir, pfmethods=('gls','pdm','bls'), pfkwargs=({},{},{'startp':1.0,'maxtransitduration':0.3}), getblssnr=False, sigclip=5.0, nperiodworkers=10, ncontrolworkers=...
[ "This", "runs", "periodfinding", "using", "several", "period", "-", "finders", "on", "a", "collection", "of", "fake", "LCs", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L1454-L1574
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2922a14619d183fb28005fa7d02027ac436f2265
valid
check_periodrec_alias
This determines what kind of aliasing (if any) exists between `recoveredperiod` and `actualperiod`. Parameters ---------- actualperiod : float The actual period of the object. recoveredperiod : float The recovered period of the object. tolerance : float The absolute d...
astrobase/fakelcs/recovery.py
def check_periodrec_alias(actualperiod, recoveredperiod, tolerance=1.0e-3): '''This determines what kind of aliasing (if any) exists between `recoveredperiod` and `actualperiod`. Parameters ---------- actualperiod : float The actual perio...
def check_periodrec_alias(actualperiod, recoveredperiod, tolerance=1.0e-3): '''This determines what kind of aliasing (if any) exists between `recoveredperiod` and `actualperiod`. Parameters ---------- actualperiod : float The actual perio...
[ "This", "determines", "what", "kind", "of", "aliasing", "(", "if", "any", ")", "exists", "between", "recoveredperiod", "and", "actualperiod", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L1578-L1675
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2922a14619d183fb28005fa7d02027ac436f2265
valid
periodicvar_recovery
Recovers the periodic variable status/info for the simulated PF result. - Uses simbasedir and the lcfbasename stored in fakepfpkl to figure out where the LC for this object is. - Gets the actual_varparams, actual_varperiod, actual_vartype, actual_varamplitude elements from the LC. - Figures out...
astrobase/fakelcs/recovery.py
def periodicvar_recovery(fakepfpkl, simbasedir, period_tolerance=1.0e-3): '''Recovers the periodic variable status/info for the simulated PF result. - Uses simbasedir and the lcfbasename stored in fakepfpkl to figure out where the LC for this object is. ...
def periodicvar_recovery(fakepfpkl, simbasedir, period_tolerance=1.0e-3): '''Recovers the periodic variable status/info for the simulated PF result. - Uses simbasedir and the lcfbasename stored in fakepfpkl to figure out where the LC for this object is. ...
[ "Recovers", "the", "periodic", "variable", "status", "/", "info", "for", "the", "simulated", "PF", "result", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L1679-L1911
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2922a14619d183fb28005fa7d02027ac436f2265
valid
periodrec_worker
This is a parallel worker for running period-recovery. Parameters ---------- task : tuple This is used to pass args to the `periodicvar_recovery` function:: task[0] = period-finding result pickle to work on task[1] = simbasedir task[2] = period_tolerance R...
astrobase/fakelcs/recovery.py
def periodrec_worker(task): '''This is a parallel worker for running period-recovery. Parameters ---------- task : tuple This is used to pass args to the `periodicvar_recovery` function:: task[0] = period-finding result pickle to work on task[1] = simbasedir ...
def periodrec_worker(task): '''This is a parallel worker for running period-recovery. Parameters ---------- task : tuple This is used to pass args to the `periodicvar_recovery` function:: task[0] = period-finding result pickle to work on task[1] = simbasedir ...
[ "This", "is", "a", "parallel", "worker", "for", "running", "period", "-", "recovery", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L1915-L1946
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2922a14619d183fb28005fa7d02027ac436f2265
valid
parallel_periodicvar_recovery
This is a parallel driver for `periodicvar_recovery`. Parameters ---------- simbasedir : str The base directory where all of the fake LCs and period-finding results are. period_tolerance : float The maximum difference that this function will consider between an actual ...
astrobase/fakelcs/recovery.py
def parallel_periodicvar_recovery(simbasedir, period_tolerance=1.0e-3, liststartind=None, listmaxobjects=None, nworkers=None): '''This is a parallel driver for `periodicvar_recover...
def parallel_periodicvar_recovery(simbasedir, period_tolerance=1.0e-3, liststartind=None, listmaxobjects=None, nworkers=None): '''This is a parallel driver for `periodicvar_recover...
[ "This", "is", "a", "parallel", "driver", "for", "periodicvar_recovery", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L1950-L2064
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2922a14619d183fb28005fa7d02027ac436f2265
valid
plot_periodicvar_recovery_results
This plots the results of periodic var recovery. This function makes plots for periodicvar recovered fraction as a function of: - magbin - periodbin - amplitude of variability - ndet with plot lines broken down by: - magcol - periodfinder - vartype - recovery status ...
astrobase/fakelcs/recovery.py
def plot_periodicvar_recovery_results( precvar_results, aliases_count_as_recovered=None, magbins=None, periodbins=None, amplitudebins=None, ndetbins=None, minbinsize=1, plotfile_ext='png', ): '''This plots the results of periodic var recovery. Thi...
def plot_periodicvar_recovery_results( precvar_results, aliases_count_as_recovered=None, magbins=None, periodbins=None, amplitudebins=None, ndetbins=None, minbinsize=1, plotfile_ext='png', ): '''This plots the results of periodic var recovery. Thi...
[ "This", "plots", "the", "results", "of", "periodic", "var", "recovery", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/fakelcs/recovery.py#L2073-L3700
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2922a14619d183fb28005fa7d02027ac436f2265
valid
mast_query
This queries the STScI MAST service for catalog data. All results are downloaded as JSON files that are written to `cachedir`. Parameters ---------- service : str This is the name of the service to use. See https://mast.stsci.edu/api/v0/_services.html for a list of all available ...
astrobase/services/mast.py
def mast_query(service, params, data=None, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=10.0, refresh=5.0, maxtimeout=90.0, ...
def mast_query(service, params, data=None, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=10.0, refresh=5.0, maxtimeout=90.0, ...
[ "This", "queries", "the", "STScI", "MAST", "service", "for", "catalog", "data", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/services/mast.py#L78-L338
[ "def", "mast_query", "(", "service", ",", "params", ",", "data", "=", "None", ",", "apiversion", "=", "'v0'", ",", "forcefetch", "=", "False", ",", "cachedir", "=", "'~/.astrobase/mast-cache'", ",", "verbose", "=", "True", ",", "timeout", "=", "10.0", ",",...
2922a14619d183fb28005fa7d02027ac436f2265
valid
tic_conesearch
This runs a TESS Input Catalog cone search on MAST. If you use this, please cite the TIC paper (Stassun et al 2018; http://adsabs.harvard.edu/abs/2018AJ....156..102S). Also see the "living" TESS input catalog docs: https://docs.google.com/document/d/1zdiKMs4Ld4cXZ2DW4lMX-fuxAF6hPHTjqjIwGqnfjqI Al...
astrobase/services/mast.py
def tic_conesearch( ra, decl, radius_arcmin=5.0, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=10.0, refresh=5.0, maxtimeout=90.0, maxtries=3, jitter=5.0, raiseonfail=Fa...
def tic_conesearch( ra, decl, radius_arcmin=5.0, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=10.0, refresh=5.0, maxtimeout=90.0, maxtries=3, jitter=5.0, raiseonfail=Fa...
[ "This", "runs", "a", "TESS", "Input", "Catalog", "cone", "search", "on", "MAST", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/services/mast.py#L342-L448
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2922a14619d183fb28005fa7d02027ac436f2265
valid
tic_xmatch
This does a cross-match with TIC. Parameters ---------- ra,decl : np.arrays or lists of floats The coordinates that will be cross-matched against the TIC. radius_arcsec : float The cross-match radius in arcseconds. apiversion : str The API version of the MAST service to u...
astrobase/services/mast.py
def tic_xmatch( ra, decl, radius_arcsec=5.0, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=90.0, refresh=5.0, maxtimeout=180.0, maxtries=3, jitter=5.0, raiseonfail=False...
def tic_xmatch( ra, decl, radius_arcsec=5.0, apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=90.0, refresh=5.0, maxtimeout=180.0, maxtries=3, jitter=5.0, raiseonfail=False...
[ "This", "does", "a", "cross", "-", "match", "with", "TIC", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/services/mast.py#L452-L554
[ "def", "tic_xmatch", "(", "ra", ",", "decl", ",", "radius_arcsec", "=", "5.0", ",", "apiversion", "=", "'v0'", ",", "forcefetch", "=", "False", ",", "cachedir", "=", "'~/.astrobase/mast-cache'", ",", "verbose", "=", "True", ",", "timeout", "=", "90.0", ","...
2922a14619d183fb28005fa7d02027ac436f2265
valid
tic_objectsearch
This runs a TIC search for a specified TIC ID. Parameters ---------- objectid : str The object ID to look up information for. idcol_to_use : str This is the name of the object ID column to use when looking up the provided `objectid`. This is one of {'ID', 'HIP', 'TYC', 'UCAC',...
astrobase/services/mast.py
def tic_objectsearch( objectid, idcol_to_use="ID", apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=90.0, refresh=5.0, maxtimeout=180.0, maxtries=3, jitter=5.0, raiseonfail=False )...
def tic_objectsearch( objectid, idcol_to_use="ID", apiversion='v0', forcefetch=False, cachedir='~/.astrobase/mast-cache', verbose=True, timeout=90.0, refresh=5.0, maxtimeout=180.0, maxtries=3, jitter=5.0, raiseonfail=False )...
[ "This", "runs", "a", "TIC", "search", "for", "a", "specified", "TIC", "ID", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/services/mast.py#L558-L659
[ "def", "tic_objectsearch", "(", "objectid", ",", "idcol_to_use", "=", "\"ID\"", ",", "apiversion", "=", "'v0'", ",", "forcefetch", "=", "False", ",", "cachedir", "=", "'~/.astrobase/mast-cache'", ",", "verbose", "=", "True", ",", "timeout", "=", "90.0", ",", ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
send_email
This sends an email to addresses, informing them about events. The email account settings are retrieved from the settings file as described above. Parameters ---------- sender : str The name of the sender to use in the email header. subject : str Subject of the email. co...
astrobase/emailutils.py
def send_email(sender, subject, content, email_recipient_list, email_address_list, email_user=None, email_pass=None, email_server=None): '''This sends an email to addresses, informing them about events. The...
def send_email(sender, subject, content, email_recipient_list, email_address_list, email_user=None, email_pass=None, email_server=None): '''This sends an email to addresses, informing them about events. The...
[ "This", "sends", "an", "email", "to", "addresses", "informing", "them", "about", "events", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/emailutils.py#L110-L260
[ "def", "send_email", "(", "sender", ",", "subject", ",", "content", ",", "email_recipient_list", ",", "email_address_list", ",", "email_user", "=", "None", ",", "email_pass", "=", "None", ",", "email_server", "=", "None", ")", ":", "if", "not", "email_user", ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
fourier_sinusoidal_func
This generates a sinusoidal light curve using a Fourier cosine series. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, [amplitude_1, amplitude_2, amplitude_3, ..., amplitude_X], [phas...
astrobase/lcmodels/sinusoidal.py
def fourier_sinusoidal_func(fourierparams, times, mags, errs): '''This generates a sinusoidal light curve using a Fourier cosine series. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, [amplit...
def fourier_sinusoidal_func(fourierparams, times, mags, errs): '''This generates a sinusoidal light curve using a Fourier cosine series. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, [amplit...
[ "This", "generates", "a", "sinusoidal", "light", "curve", "using", "a", "Fourier", "cosine", "series", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcmodels/sinusoidal.py#L16-L73
[ "def", "fourier_sinusoidal_func", "(", "fourierparams", ",", "times", ",", "mags", ",", "errs", ")", ":", "period", ",", "epoch", ",", "famps", ",", "fphases", "=", "fourierparams", "# figure out the order from the length of the Fourier param list", "forder", "=", "le...
2922a14619d183fb28005fa7d02027ac436f2265
valid
fourier_sinusoidal_residual
This returns the residual between the model mags and the actual mags. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, [amplitude_1, amplitude_2, amplitude_3, ..., amplitude_X], [phase...
astrobase/lcmodels/sinusoidal.py
def fourier_sinusoidal_residual(fourierparams, times, mags, errs): ''' This returns the residual between the model mags and the actual mags. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, ...
def fourier_sinusoidal_residual(fourierparams, times, mags, errs): ''' This returns the residual between the model mags and the actual mags. Parameters ---------- fourierparams : list This MUST be a list of the following form like so:: [period, epoch, ...
[ "This", "returns", "the", "residual", "between", "the", "model", "mags", "and", "the", "actual", "mags", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcmodels/sinusoidal.py#L77-L114
[ "def", "fourier_sinusoidal_residual", "(", "fourierparams", ",", "times", ",", "mags", ",", "errs", ")", ":", "modelmags", ",", "phase", ",", "ptimes", ",", "pmags", ",", "perrs", "=", "(", "fourier_sinusoidal_func", "(", "fourierparams", ",", "times", ",", ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
_make_periodogram
Makes periodogram, objectinfo, and finder tile for `checkplot_png` and `twolsp_checkplot_png`. Parameters ---------- axes : matplotlib.axes.Axes object The Axes object which will contain the plot being made. lspinfo : dict Dict containing results from a period-finder in `astrobase...
astrobase/checkplot/png.py
def _make_periodogram(axes, lspinfo, objectinfo, findercmap, finderconvolve, verbose=True, findercachedir='~/.astrobase/stamp-cache'): '''Makes periodogram, objectinfo, and finder tile...
def _make_periodogram(axes, lspinfo, objectinfo, findercmap, finderconvolve, verbose=True, findercachedir='~/.astrobase/stamp-cache'): '''Makes periodogram, objectinfo, and finder tile...
[ "Makes", "periodogram", "objectinfo", "and", "finder", "tile", "for", "checkplot_png", "and", "twolsp_checkplot_png", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/checkplot/png.py#L108-L364
[ "def", "_make_periodogram", "(", "axes", ",", "lspinfo", ",", "objectinfo", ",", "findercmap", ",", "finderconvolve", ",", "verbose", "=", "True", ",", "findercachedir", "=", "'~/.astrobase/stamp-cache'", ")", ":", "# get the appropriate plot ylabel", "pgramylabel", "...
2922a14619d183fb28005fa7d02027ac436f2265
valid
_make_magseries_plot
Makes the mag-series plot tile for `checkplot_png` and `twolsp_checkplot_png`. axes : matplotlib.axes.Axes object The Axes object where the generated plot will go. stimes,smags,serrs : np.array The mag/flux time-series arrays along with associated errors. These should all have been...
astrobase/checkplot/png.py
def _make_magseries_plot(axes, stimes, smags, serrs, magsarefluxes=False, ms=2.0): '''Makes the mag-series plot tile for `checkplot_png` and `twolsp_checkplot_png`. axes : matplotlib...
def _make_magseries_plot(axes, stimes, smags, serrs, magsarefluxes=False, ms=2.0): '''Makes the mag-series plot tile for `checkplot_png` and `twolsp_checkplot_png`. axes : matplotlib...
[ "Makes", "the", "mag", "-", "series", "plot", "tile", "for", "checkplot_png", "and", "twolsp_checkplot_png", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/checkplot/png.py#L368-L437
[ "def", "_make_magseries_plot", "(", "axes", ",", "stimes", ",", "smags", ",", "serrs", ",", "magsarefluxes", "=", "False", ",", "ms", "=", "2.0", ")", ":", "scaledplottime", "=", "stimes", "-", "npmin", "(", "stimes", ")", "axes", ".", "plot", "(", "sc...
2922a14619d183fb28005fa7d02027ac436f2265
valid
_make_phased_magseries_plot
Makes the phased magseries plot tile for the `checkplot_png` and `twolsp_checkplot_png` functions. Parameters ---------- axes : matplotlib.axes.Axes object The Axes object where the generated plot will be written. periodind : int The index of the current best period being processe...
astrobase/checkplot/png.py
def _make_phased_magseries_plot(axes, periodind, stimes, smags, serrs, varperiod, varepoch, phasewrap, phasesort, phasebin, minbinelems, ...
def _make_phased_magseries_plot(axes, periodind, stimes, smags, serrs, varperiod, varepoch, phasewrap, phasesort, phasebin, minbinelems, ...
[ "Makes", "the", "phased", "magseries", "plot", "tile", "for", "the", "checkplot_png", "and", "twolsp_checkplot_png", "functions", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/checkplot/png.py#L441-L786
[ "def", "_make_phased_magseries_plot", "(", "axes", ",", "periodind", ",", "stimes", ",", "smags", ",", "serrs", ",", "varperiod", ",", "varepoch", ",", "phasewrap", ",", "phasesort", ",", "phasebin", ",", "minbinelems", ",", "plotxlim", ",", "lspmethod", ",", ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
checkplot_png
This makes a checkplot PNG using the output from a period-finder routine. A checkplot is a 3 x 3 grid of plots like so:: [periodogram + objectinfo] [ unphased LC ] [period 1 phased LC] [ period 1 phased LC /2 ] [period 1 phased LC x2] [period 2 phased LC] [ period 3 phased LC ...
astrobase/checkplot/png.py
def checkplot_png(lspinfo, times, mags, errs, varepoch='min', magsarefluxes=False, objectinfo=None, findercmap='gray_r', finderconvolve=None, findercachedir='...
def checkplot_png(lspinfo, times, mags, errs, varepoch='min', magsarefluxes=False, objectinfo=None, findercmap='gray_r', finderconvolve=None, findercachedir='...
[ "This", "makes", "a", "checkplot", "PNG", "using", "the", "output", "from", "a", "period", "-", "finder", "routine", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/checkplot/png.py#L794-L1172
[ "def", "checkplot_png", "(", "lspinfo", ",", "times", ",", "mags", ",", "errs", ",", "varepoch", "=", "'min'", ",", "magsarefluxes", "=", "False", ",", "objectinfo", "=", "None", ",", "findercmap", "=", "'gray_r'", ",", "finderconvolve", "=", "None", ",", ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
twolsp_checkplot_png
This makes a checkplot using results from two independent period-finders. Adapted from Luke Bouma's implementation of a similar function in his work. This makes a special checkplot that uses two lspinfo dictionaries, from two independent period-finding methods. For EBs, it's probably best to use Stelli...
astrobase/checkplot/png.py
def twolsp_checkplot_png(lspinfo1, lspinfo2, times, mags, errs, varepoch='min', magsarefluxes=False, objectinfo=None, fi...
def twolsp_checkplot_png(lspinfo1, lspinfo2, times, mags, errs, varepoch='min', magsarefluxes=False, objectinfo=None, fi...
[ "This", "makes", "a", "checkplot", "using", "results", "from", "two", "independent", "period", "-", "finders", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/checkplot/png.py#L1176-L1638
[ "def", "twolsp_checkplot_png", "(", "lspinfo1", ",", "lspinfo2", ",", "times", ",", "mags", ",", "errs", ",", "varepoch", "=", "'min'", ",", "magsarefluxes", "=", "False", ",", "objectinfo", "=", "None", ",", "findercmap", "=", "'gray_r'", ",", "finderconvol...
2922a14619d183fb28005fa7d02027ac436f2265
valid
precess_coordinates
Precesses target coordinates `ra`, `dec` from `epoch_one` to `epoch_two`. This takes into account the jd of the observations, as well as the proper motion of the target mu_ra, mu_dec. Adapted from J. D. Hartman's VARTOOLS/converttime.c [coordprecess]. Parameters ---------- ra,dec : float ...
astrobase/timeutils.py
def precess_coordinates(ra, dec, epoch_one, epoch_two, jd=None, mu_ra=0.0, mu_dec=0.0, outscalar=False): '''Precesses target coordinates `ra`, `dec` from `epoch_one` to `epoch_two`. This take...
def precess_coordinates(ra, dec, epoch_one, epoch_two, jd=None, mu_ra=0.0, mu_dec=0.0, outscalar=False): '''Precesses target coordinates `ra`, `dec` from `epoch_one` to `epoch_two`. This take...
[ "Precesses", "target", "coordinates", "ra", "dec", "from", "epoch_one", "to", "epoch_two", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L137-L257
[ "def", "precess_coordinates", "(", "ra", ",", "dec", ",", "epoch_one", ",", "epoch_two", ",", "jd", "=", "None", ",", "mu_ra", "=", "0.0", ",", "mu_dec", "=", "0.0", ",", "outscalar", "=", "False", ")", ":", "raproc", ",", "decproc", "=", "np", ".", ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
_single_true
This returns True if only one True-ish element exists in `iterable`. Parameters ---------- iterable : iterable Returns ------- bool True if only one True-ish element exists in `iterable`. False otherwise.
astrobase/timeutils.py
def _single_true(iterable): '''This returns True if only one True-ish element exists in `iterable`. Parameters ---------- iterable : iterable Returns ------- bool True if only one True-ish element exists in `iterable`. False otherwise. ''' # return True if exactly one t...
def _single_true(iterable): '''This returns True if only one True-ish element exists in `iterable`. Parameters ---------- iterable : iterable Returns ------- bool True if only one True-ish element exists in `iterable`. False otherwise. ''' # return True if exactly one t...
[ "This", "returns", "True", "if", "only", "one", "True", "-", "ish", "element", "exists", "in", "iterable", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L265-L290
[ "def", "_single_true", "(", "iterable", ")", ":", "# return True if exactly one true found", "iterator", "=", "iter", "(", "iterable", ")", "# consume from \"i\" until first true or it's exhausted", "has_true", "=", "any", "(", "iterator", ")", "# carry on consuming until ano...
2922a14619d183fb28005fa7d02027ac436f2265
valid
get_epochs_given_midtimes_and_period
This calculates the future epochs for a transit, given a period and a starting epoch The equation used is:: t_mid = period*epoch + t0 Default behavior if no kwargs are used is to define `t0` as the median finite time of the passed `t_mid` array. Only one of `err_t_mid` or `t0_fixed` shou...
astrobase/timeutils.py
def get_epochs_given_midtimes_and_period( t_mid, period, err_t_mid=None, t0_fixed=None, t0_percentile=None, verbose=False ): '''This calculates the future epochs for a transit, given a period and a starting epoch The equation used is:: t_mid = period...
def get_epochs_given_midtimes_and_period( t_mid, period, err_t_mid=None, t0_fixed=None, t0_percentile=None, verbose=False ): '''This calculates the future epochs for a transit, given a period and a starting epoch The equation used is:: t_mid = period...
[ "This", "calculates", "the", "future", "epochs", "for", "a", "transit", "given", "a", "period", "and", "a", "starting", "epoch" ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L294-L388
[ "def", "get_epochs_given_midtimes_and_period", "(", "t_mid", ",", "period", ",", "err_t_mid", "=", "None", ",", "t0_fixed", "=", "None", ",", "t0_percentile", "=", "None", ",", "verbose", "=", "False", ")", ":", "kwargarr", "=", "np", ".", "array", "(", "[...
2922a14619d183fb28005fa7d02027ac436f2265
valid
unixtime_to_jd
This converts UNIX time in seconds to a Julian date in UTC (JD_UTC). Parameters ---------- unix_time : float A UNIX time in decimal seconds since the 1970 UNIX epoch. Returns ------- jd : float The Julian date corresponding to the provided UNIX time.
astrobase/timeutils.py
def unixtime_to_jd(unix_time): '''This converts UNIX time in seconds to a Julian date in UTC (JD_UTC). Parameters ---------- unix_time : float A UNIX time in decimal seconds since the 1970 UNIX epoch. Returns ------- jd : float The Julian date corresponding to the provide...
def unixtime_to_jd(unix_time): '''This converts UNIX time in seconds to a Julian date in UTC (JD_UTC). Parameters ---------- unix_time : float A UNIX time in decimal seconds since the 1970 UNIX epoch. Returns ------- jd : float The Julian date corresponding to the provide...
[ "This", "converts", "UNIX", "time", "in", "seconds", "to", "a", "Julian", "date", "in", "UTC", "(", "JD_UTC", ")", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L396-L415
[ "def", "unixtime_to_jd", "(", "unix_time", ")", ":", "# use astropy's time module", "jdutc", "=", "astime", ".", "Time", "(", "unix_time", ",", "format", "=", "'unix'", ",", "scale", "=", "'utc'", ")", "return", "jdutc", ".", "jd" ]
2922a14619d183fb28005fa7d02027ac436f2265
valid
datetime_to_jd
This converts a Python datetime object (naive, time in UT) to JD_UTC. Parameters ---------- dt : datetime A naive Python `datetime` object (e.g. with no tz attribute) measured at UTC. Returns ------- jd : float The Julian date corresponding to the `datetime` object.
astrobase/timeutils.py
def datetime_to_jd(dt): '''This converts a Python datetime object (naive, time in UT) to JD_UTC. Parameters ---------- dt : datetime A naive Python `datetime` object (e.g. with no tz attribute) measured at UTC. Returns ------- jd : float The Julian date correspond...
def datetime_to_jd(dt): '''This converts a Python datetime object (naive, time in UT) to JD_UTC. Parameters ---------- dt : datetime A naive Python `datetime` object (e.g. with no tz attribute) measured at UTC. Returns ------- jd : float The Julian date correspond...
[ "This", "converts", "a", "Python", "datetime", "object", "(", "naive", "time", "in", "UT", ")", "to", "JD_UTC", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L419-L438
[ "def", "datetime_to_jd", "(", "dt", ")", ":", "jdutc", "=", "astime", ".", "Time", "(", "dt", ",", "format", "=", "'datetime'", ",", "scale", "=", "'utc'", ")", "return", "jdutc", ".", "jd" ]
2922a14619d183fb28005fa7d02027ac436f2265
valid
jd_to_datetime
This converts a UTC JD to a Python `datetime` object or ISO date string. Parameters ---------- jd : float The Julian date measured at UTC. returniso : bool If False, returns a naive Python `datetime` object corresponding to `jd`. If True, returns the ISO format string correspo...
astrobase/timeutils.py
def jd_to_datetime(jd, returniso=False): '''This converts a UTC JD to a Python `datetime` object or ISO date string. Parameters ---------- jd : float The Julian date measured at UTC. returniso : bool If False, returns a naive Python `datetime` object corresponding to `jd`....
def jd_to_datetime(jd, returniso=False): '''This converts a UTC JD to a Python `datetime` object or ISO date string. Parameters ---------- jd : float The Julian date measured at UTC. returniso : bool If False, returns a naive Python `datetime` object corresponding to `jd`....
[ "This", "converts", "a", "UTC", "JD", "to", "a", "Python", "datetime", "object", "or", "ISO", "date", "string", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L442-L469
[ "def", "jd_to_datetime", "(", "jd", ",", "returniso", "=", "False", ")", ":", "tt", "=", "astime", ".", "Time", "(", "jd", ",", "format", "=", "'jd'", ",", "scale", "=", "'utc'", ")", "if", "returniso", ":", "return", "tt", ".", "iso", "else", ":",...
2922a14619d183fb28005fa7d02027ac436f2265
valid
jd_corr
Returns BJD_TDB or HJD_TDB for input JD_UTC. The equation used is:: BJD_TDB = JD_UTC + JD_to_TDB_corr + romer_delay where: - JD_to_TDB_corr is the difference between UTC and TDB JDs - romer_delay is the delay caused by finite speed of light from Earth-Sun This is based on the code at: ...
astrobase/timeutils.py
def jd_corr(jd, ra, dec, obslon=None, obslat=None, obsalt=None, jd_type='bjd'): '''Returns BJD_TDB or HJD_TDB for input JD_UTC. The equation used is:: BJD_TDB = JD_UTC + JD_to_TDB_corr + romer_delay where: - JD_to_TDB_corr is the di...
def jd_corr(jd, ra, dec, obslon=None, obslat=None, obsalt=None, jd_type='bjd'): '''Returns BJD_TDB or HJD_TDB for input JD_UTC. The equation used is:: BJD_TDB = JD_UTC + JD_to_TDB_corr + romer_delay where: - JD_to_TDB_corr is the di...
[ "Returns", "BJD_TDB", "or", "HJD_TDB", "for", "input", "JD_UTC", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/timeutils.py#L535-L668
[ "def", "jd_corr", "(", "jd", ",", "ra", ",", "dec", ",", "obslon", "=", "None", ",", "obslat", "=", "None", ",", "obsalt", "=", "None", ",", "jd_type", "=", "'bjd'", ")", ":", "if", "not", "HAVEKERNEL", ":", "LOGERROR", "(", "'no JPL kernel available, ...
2922a14619d183fb28005fa7d02027ac436f2265
valid
_lclist_parallel_worker
This is a parallel worker for makelclist. Parameters ---------- task : tuple This is a tuple containing the following items: task[0] = lcf task[1] = columns task[2] = lcformat task[3] = lcformatdir task[4] = lcndetkey Returns ------- dict or N...
astrobase/lcproc/catalogs.py
def _lclist_parallel_worker(task): '''This is a parallel worker for makelclist. Parameters ---------- task : tuple This is a tuple containing the following items: task[0] = lcf task[1] = columns task[2] = lcformat task[3] = lcformatdir task[4] = lcndetk...
def _lclist_parallel_worker(task): '''This is a parallel worker for makelclist. Parameters ---------- task : tuple This is a tuple containing the following items: task[0] = lcf task[1] = columns task[2] = lcformat task[3] = lcformatdir task[4] = lcndetk...
[ "This", "is", "a", "parallel", "worker", "for", "makelclist", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/catalogs.py#L116-L228
[ "def", "_lclist_parallel_worker", "(", "task", ")", ":", "lcf", ",", "columns", ",", "lcformat", ",", "lcformatdir", ",", "lcndetkey", "=", "task", "# get the bits needed for lcformat handling", "# NOTE: we re-import things in this worker function because sometimes", "# functio...
2922a14619d183fb28005fa7d02027ac436f2265
valid
make_lclist
This generates a light curve catalog for all light curves in a directory. Given a base directory where all the files are, and a light curve format, this will find all light curves, pull out the keys in each lcdict requested in the `columns` kwarg for each object, and write them to the requested output ...
astrobase/lcproc/catalogs.py
def make_lclist(basedir, outfile, use_list_of_filenames=None, lcformat='hat-sql', lcformatdir=None, fileglob=None, recursive=True, columns=['objectid', 'objectinfo.ra', ...
def make_lclist(basedir, outfile, use_list_of_filenames=None, lcformat='hat-sql', lcformatdir=None, fileglob=None, recursive=True, columns=['objectid', 'objectinfo.ra', ...
[ "This", "generates", "a", "light", "curve", "catalog", "for", "all", "light", "curves", "in", "a", "directory", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/catalogs.py#L232-L743
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2922a14619d183fb28005fa7d02027ac436f2265
valid
filter_lclist
This is used to perform cone-search, cross-match, and column-filter operations on a light curve catalog generated by `make_lclist`. Uses the output of `make_lclist` above. This function returns a list of light curves matching various criteria specified by the `xmatchexternal`, `conesearch`, and `column...
astrobase/lcproc/catalogs.py
def filter_lclist(lc_catalog, objectidcol='objectid', racol='ra', declcol='decl', xmatchexternal=None, xmatchdistarcsec=3.0, externalcolnums=(0,1,2), externalcolnames=['objectid','ra','decl'], ...
def filter_lclist(lc_catalog, objectidcol='objectid', racol='ra', declcol='decl', xmatchexternal=None, xmatchdistarcsec=3.0, externalcolnums=(0,1,2), externalcolnames=['objectid','ra','decl'], ...
[ "This", "is", "used", "to", "perform", "cone", "-", "search", "cross", "-", "match", "and", "column", "-", "filter", "operations", "on", "a", "light", "curve", "catalog", "generated", "by", "make_lclist", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/catalogs.py#L747-L1214
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2922a14619d183fb28005fa7d02027ac436f2265
valid
_cpinfo_key_worker
This wraps `checkplotlist.checkplot_infokey_worker`. This is used to get the correct dtype for each element in retrieved results. Parameters ---------- task : tuple task[0] = cpfile task[1] = keyspeclist (infokeys kwarg from `add_cpinfo_to_lclist`) Returns ------- dict ...
astrobase/lcproc/catalogs.py
def _cpinfo_key_worker(task): '''This wraps `checkplotlist.checkplot_infokey_worker`. This is used to get the correct dtype for each element in retrieved results. Parameters ---------- task : tuple task[0] = cpfile task[1] = keyspeclist (infokeys kwarg from `add_cpinfo_to_lclist`)...
def _cpinfo_key_worker(task): '''This wraps `checkplotlist.checkplot_infokey_worker`. This is used to get the correct dtype for each element in retrieved results. Parameters ---------- task : tuple task[0] = cpfile task[1] = keyspeclist (infokeys kwarg from `add_cpinfo_to_lclist`)...
[ "This", "wraps", "checkplotlist", ".", "checkplot_infokey_worker", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/catalogs.py#L1222-L1283
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2922a14619d183fb28005fa7d02027ac436f2265
valid
add_cpinfo_to_lclist
This adds checkplot info to the initial light curve catalogs generated by `make_lclist`. This is used to incorporate all the extra info checkplots can have for objects back into columns in the light curve catalog produced by `make_lclist`. Objects are matched between the checkplots and the light cu...
astrobase/lcproc/catalogs.py
def add_cpinfo_to_lclist( checkplots, # list or a directory path initial_lc_catalog, magcol, # to indicate checkplot magcol outfile, checkplotglob='checkplot*.pkl*', infokeys=CPINFO_DEFAULTKEYS, nworkers=NCPUS ): '''This adds checkplot info to the initial li...
def add_cpinfo_to_lclist( checkplots, # list or a directory path initial_lc_catalog, magcol, # to indicate checkplot magcol outfile, checkplotglob='checkplot*.pkl*', infokeys=CPINFO_DEFAULTKEYS, nworkers=NCPUS ): '''This adds checkplot info to the initial li...
[ "This", "adds", "checkplot", "info", "to", "the", "initial", "light", "curve", "catalogs", "generated", "by", "make_lclist", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/catalogs.py#L1451-L1661
[ "def", "add_cpinfo_to_lclist", "(", "checkplots", ",", "# list or a directory path", "initial_lc_catalog", ",", "magcol", ",", "# to indicate checkplot magcol", "outfile", ",", "checkplotglob", "=", "'checkplot*.pkl*'", ",", "infokeys", "=", "CPINFO_DEFAULTKEYS", ",", "nwor...
2922a14619d183fb28005fa7d02027ac436f2265
valid
variability_threshold
This generates a list of objects with stetson J, IQR, and 1.0/eta above some threshold value to select them as potential variable stars. Use this to pare down the objects to review and put through period-finding. This does the thresholding per magnitude bin; this should be better than one single cut th...
astrobase/lcproc/varthreshold.py
def variability_threshold(featuresdir, outfile, magbins=DEFAULT_MAGBINS, maxobjects=None, timecols=None, magcols=None, errcols=None, lcfor...
def variability_threshold(featuresdir, outfile, magbins=DEFAULT_MAGBINS, maxobjects=None, timecols=None, magcols=None, errcols=None, lcfor...
[ "This", "generates", "a", "list", "of", "objects", "with", "stetson", "J", "IQR", "and", "1", ".", "0", "/", "eta", "above", "some", "threshold", "value", "to", "select", "them", "as", "potential", "variable", "stars", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/varthreshold.py#L96-L699
[ "def", "variability_threshold", "(", "featuresdir", ",", "outfile", ",", "magbins", "=", "DEFAULT_MAGBINS", ",", "maxobjects", "=", "None", ",", "timecols", "=", "None", ",", "magcols", "=", "None", ",", "errcols", "=", "None", ",", "lcformat", "=", "'hat-sq...
2922a14619d183fb28005fa7d02027ac436f2265
valid
plot_variability_thresholds
This makes plots for the variability threshold distributions. Parameters ---------- varthreshpkl : str The pickle produced by the function above. xmin_lcmad_stdev,xmin_stetj_stdev,xmin_iqr_stdev,xmin_inveta_stdev : float or np.array Values of the threshold values to override the ones ...
astrobase/lcproc/varthreshold.py
def plot_variability_thresholds(varthreshpkl, xmin_lcmad_stdev=5.0, xmin_stetj_stdev=2.0, xmin_iqr_stdev=2.0, xmin_inveta_stdev=2.0, lcformat='hat-sql', ...
def plot_variability_thresholds(varthreshpkl, xmin_lcmad_stdev=5.0, xmin_stetj_stdev=2.0, xmin_iqr_stdev=2.0, xmin_inveta_stdev=2.0, lcformat='hat-sql', ...
[ "This", "makes", "plots", "for", "the", "variability", "threshold", "distributions", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/lcproc/varthreshold.py#L703-L885
[ "def", "plot_variability_thresholds", "(", "varthreshpkl", ",", "xmin_lcmad_stdev", "=", "5.0", ",", "xmin_stetj_stdev", "=", "2.0", ",", "xmin_iqr_stdev", "=", "2.0", ",", "xmin_inveta_stdev", "=", "2.0", ",", "lcformat", "=", "'hat-sql'", ",", "lcformatdir", "="...
2922a14619d183fb28005fa7d02027ac436f2265
valid
get_stamp
This gets a FITS cutout from the NASA GSFC SkyView service. This downloads stamps in FITS format from the NASA SkyView service: https://skyview.gsfc.nasa.gov/current/cgi/query.pl Parameters ---------- ra,decl : float These are decimal equatorial coordinates for the cutout center. s...
astrobase/services/skyview.py
def get_stamp(ra, decl, survey='DSS2 Red', scaling='Linear', sizepix=300, forcefetch=False, cachedir='~/.astrobase/stamp-cache', timeout=10.0, retry_failed=True, verbose=True, jitter=5.0): '...
def get_stamp(ra, decl, survey='DSS2 Red', scaling='Linear', sizepix=300, forcefetch=False, cachedir='~/.astrobase/stamp-cache', timeout=10.0, retry_failed=True, verbose=True, jitter=5.0): '...
[ "This", "gets", "a", "FITS", "cutout", "from", "the", "NASA", "GSFC", "SkyView", "service", "." ]
waqasbhatti/astrobase
python
https://github.com/waqasbhatti/astrobase/blob/2922a14619d183fb28005fa7d02027ac436f2265/astrobase/services/skyview.py#L93-L307
[ "def", "get_stamp", "(", "ra", ",", "decl", ",", "survey", "=", "'DSS2 Red'", ",", "scaling", "=", "'Linear'", ",", "sizepix", "=", "300", ",", "forcefetch", "=", "False", ",", "cachedir", "=", "'~/.astrobase/stamp-cache'", ",", "timeout", "=", "10.0", ","...
2922a14619d183fb28005fa7d02027ac436f2265
valid
MapPolyline._update_proxy
An observer which sends the state change to the proxy.
src/googlemaps/widgets/map_view.py
def _update_proxy(self, change): """ An observer which sends the state change to the proxy. """ if change['type'] == 'container': #: Only update what's needed self.proxy.update_points(change) else: super(MapPolyline, self)._update_proxy(change)
def _update_proxy(self, change): """ An observer which sends the state change to the proxy. """ if change['type'] == 'container': #: Only update what's needed self.proxy.update_points(change) else: super(MapPolyline, self)._update_proxy(change)
[ "An", "observer", "which", "sends", "the", "state", "change", "to", "the", "proxy", "." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/widgets/map_view.py#L512-L520
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5b6dda745cede05755dd40d29775cc0544226c29
valid
MapPolygon._update_proxy
An observer which sends the state change to the proxy.
src/googlemaps/widgets/map_view.py
def _update_proxy(self, change): """ An observer which sends the state change to the proxy. """ if change['type'] == 'container': #: Only update what's needed self.proxy.update_points(change) else: super(MapPolygon, self)._update_proxy(change)
def _update_proxy(self, change): """ An observer which sends the state change to the proxy. """ if change['type'] == 'container': #: Only update what's needed self.proxy.update_points(change) else: super(MapPolygon, self)._update_proxy(change)
[ "An", "observer", "which", "sends", "the", "state", "change", "to", "the", "proxy", "." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/widgets/map_view.py#L567-L575
[ "def", "_update_proxy", "(", "self", ",", "change", ")", ":", "if", "change", "[", "'type'", "]", "==", "'container'", ":", "#: Only update what's needed", "self", ".", "proxy", ".", "update_points", "(", "change", ")", "else", ":", "super", "(", "MapPolygon...
5b6dda745cede05755dd40d29775cc0544226c29
valid
LatLngList.handle_change
Handle changes from atom ContainerLists
src/googlemaps/android/android_map_view.py
def handle_change(self, change): """ Handle changes from atom ContainerLists """ op = change['operation'] if op in 'append': self.add(len(change['value']), LatLng(*change['item'])) elif op == 'insert': self.add(change['index'], LatLng(*change['item'])) eli...
def handle_change(self, change): """ Handle changes from atom ContainerLists """ op = change['operation'] if op in 'append': self.add(len(change['value']), LatLng(*change['item'])) elif op == 'insert': self.add(change['index'], LatLng(*change['item'])) eli...
[ "Handle", "changes", "from", "atom", "ContainerLists" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L62-L78
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.create_widget
Create the underlying widget.
src/googlemaps/android/android_map_view.py
def create_widget(self): """ Create the underlying widget. """ self.init_options() #: Retrieve the actual map MapFragment.newInstance(self.options).then( self.on_map_fragment_created) # Holder for the fragment self.widget = FrameLayout(self.get_cont...
def create_widget(self): """ Create the underlying widget. """ self.init_options() #: Retrieve the actual map MapFragment.newInstance(self.options).then( self.on_map_fragment_created) # Holder for the fragment self.widget = FrameLayout(self.get_cont...
[ "Create", "the", "underlying", "widget", "." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L440-L464
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.init_options
Initialize the underlying map options.
src/googlemaps/android/android_map_view.py
def init_options(self): """ Initialize the underlying map options. """ self.options = GoogleMapOptions() d = self.declaration self.set_map_type(d.map_type) if d.ambient_mode: self.set_ambient_mode(d.ambient_mode) if (d.camera_position or d.camera_zoom...
def init_options(self): """ Initialize the underlying map options. """ self.options = GoogleMapOptions() d = self.declaration self.set_map_type(d.map_type) if d.ambient_mode: self.set_ambient_mode(d.ambient_mode) if (d.camera_position or d.camera_zoom...
[ "Initialize", "the", "underlying", "map", "options", "." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L466-L499
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.init_map
Add markers, polys, callouts, etc..
src/googlemaps/android/android_map_view.py
def init_map(self): """ Add markers, polys, callouts, etc..""" d = self.declaration if d.show_location: self.set_show_location(d.show_location) if d.show_traffic: self.set_show_traffic(d.show_traffic) if d.show_indoors: self.set_show_indoors(d....
def init_map(self): """ Add markers, polys, callouts, etc..""" d = self.declaration if d.show_location: self.set_show_location(d.show_location) if d.show_traffic: self.set_show_traffic(d.show_traffic) if d.show_indoors: self.set_show_indoors(d....
[ "Add", "markers", "polys", "callouts", "etc", ".." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L501-L558
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.init_info_window_adapter
Initialize the info window adapter. Should only be done if one of the markers defines a custom view.
src/googlemaps/android/android_map_view.py
def init_info_window_adapter(self): """ Initialize the info window adapter. Should only be done if one of the markers defines a custom view. """ adapter = self.adapter if adapter: return #: Already initialized adapter = GoogleMap.InfoWindowAdapter() ...
def init_info_window_adapter(self): """ Initialize the info window adapter. Should only be done if one of the markers defines a custom view. """ adapter = self.adapter if adapter: return #: Already initialized adapter = GoogleMap.InfoWindowAdapter() ...
[ "Initialize", "the", "info", "window", "adapter", ".", "Should", "only", "be", "done", "if", "one", "of", "the", "markers", "defines", "a", "custom", "view", "." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L560-L570
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.on_map_fragment_created
Create the fragment and pull the map reference when it's loaded.
src/googlemaps/android/android_map_view.py
def on_map_fragment_created(self, obj_id): """ Create the fragment and pull the map reference when it's loaded. """ self.fragment = MapFragment(__id__=obj_id) #: Setup callback so we know when the map is ready self.map.onMapReady.connect(self.on_map_ready) self.fragment...
def on_map_fragment_created(self, obj_id): """ Create the fragment and pull the map reference when it's loaded. """ self.fragment = MapFragment(__id__=obj_id) #: Setup callback so we know when the map is ready self.map.onMapReady.connect(self.on_map_ready) self.fragment...
[ "Create", "the", "fragment", "and", "pull", "the", "map", "reference", "when", "it", "s", "loaded", "." ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L575-L595
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.on_map_clicked
Called when the map is clicked
src/googlemaps/android/android_map_view.py
def on_map_clicked(self, pos): """ Called when the map is clicked """ d = self.declaration d.clicked({ 'click': 'short', 'position': tuple(pos) })
def on_map_clicked(self, pos): """ Called when the map is clicked """ d = self.declaration d.clicked({ 'click': 'short', 'position': tuple(pos) })
[ "Called", "when", "the", "map", "is", "clicked" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L629-L635
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapView.on_map_long_clicked
Called when the map is clicked
src/googlemaps/android/android_map_view.py
def on_map_long_clicked(self, pos): """ Called when the map is clicked """ d = self.declaration d.clicked({ 'click': 'long', 'position': tuple(pos) })
def on_map_long_clicked(self, pos): """ Called when the map is clicked """ d = self.declaration d.clicked({ 'click': 'long', 'position': tuple(pos) })
[ "Called", "when", "the", "map", "is", "clicked" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L637-L643
[ "def", "on_map_long_clicked", "(", "self", ",", "pos", ")", ":", "d", "=", "self", ".", "declaration", "d", ".", "clicked", "(", "{", "'click'", ":", "'long'", ",", "'position'", ":", "tuple", "(", "pos", ")", "}", ")" ]
5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapItemBase.destroy
Remove the marker if it was added to the map when destroying
src/googlemaps/android/android_map_view.py
def destroy(self): """ Remove the marker if it was added to the map when destroying""" marker = self.marker parent = self.parent() if marker: if parent: del parent.markers[marker.__id__] marker.remove() super(AndroidMapItemBase, self).destr...
def destroy(self): """ Remove the marker if it was added to the map when destroying""" marker = self.marker parent = self.parent() if marker: if parent: del parent.markers[marker.__id__] marker.remove() super(AndroidMapItemBase, self).destr...
[ "Remove", "the", "marker", "if", "it", "was", "added", "to", "the", "map", "when", "destroying" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L911-L919
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapMarker.child_added
If a child is added we have to make sure the map adapter exists
src/googlemaps/android/android_map_view.py
def child_added(self, child): """ If a child is added we have to make sure the map adapter exists """ if child.widget: # TODO: Should we keep count and remove the adapter if not all # markers request it? self.parent().init_info_window_adapter() super(AndroidMa...
def child_added(self, child): """ If a child is added we have to make sure the map adapter exists """ if child.widget: # TODO: Should we keep count and remove the adapter if not all # markers request it? self.parent().init_info_window_adapter() super(AndroidMa...
[ "If", "a", "child", "is", "added", "we", "have", "to", "make", "sure", "the", "map", "adapter", "exists" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L969-L975
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapMarker.on_marker
Convert our options into the actual marker object
src/googlemaps/android/android_map_view.py
def on_marker(self, marker): """ Convert our options into the actual marker object""" mid, pos = marker self.marker = Marker(__id__=mid) mapview = self.parent() # Save ref mapview.markers[mid] = self # Required so the packer can pass the id self.marker.se...
def on_marker(self, marker): """ Convert our options into the actual marker object""" mid, pos = marker self.marker = Marker(__id__=mid) mapview = self.parent() # Save ref mapview.markers[mid] = self # Required so the packer can pass the id self.marker.se...
[ "Convert", "our", "options", "into", "the", "actual", "marker", "object" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L980-L1002
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5b6dda745cede05755dd40d29775cc0544226c29
valid
AndroidMapCircle.on_marker
Convert our options into the actual circle object
src/googlemaps/android/android_map_view.py
def on_marker(self, mid): """ Convert our options into the actual circle object""" self.marker = Circle(__id__=mid) self.parent().markers[mid] = self #: Required so the packer can pass the id self.marker.setTag(mid) d = self.declaration if d.clickable: ...
def on_marker(self, mid): """ Convert our options into the actual circle object""" self.marker = Circle(__id__=mid) self.parent().markers[mid] = self #: Required so the packer can pass the id self.marker.setTag(mid) d = self.declaration if d.clickable: ...
[ "Convert", "our", "options", "into", "the", "actual", "circle", "object" ]
codelv/enaml-native-maps
python
https://github.com/codelv/enaml-native-maps/blob/5b6dda745cede05755dd40d29775cc0544226c29/src/googlemaps/android/android_map_view.py#L1151-L1164
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5b6dda745cede05755dd40d29775cc0544226c29
valid
CountVectorizer.fit_transform
Learn the vocabulary dictionary and return term-document matrix. This is equivalent to fit followed by transform, but more efficiently implemented. Parameters ---------- raw_documents : iterable An iterable which yields either str, unicode or file objects. R...
languageflow/transformer/count.py
def fit_transform(self, raw_documents, y=None): """ Learn the vocabulary dictionary and return term-document matrix. This is equivalent to fit followed by transform, but more efficiently implemented. Parameters ---------- raw_documents : iterable An iterable ...
def fit_transform(self, raw_documents, y=None): """ Learn the vocabulary dictionary and return term-document matrix. This is equivalent to fit followed by transform, but more efficiently implemented. Parameters ---------- raw_documents : iterable An iterable ...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/transformer/count.py#L145-L167
[ "def", "fit_transform", "(", "self", ",", "raw_documents", ",", "y", "=", "None", ")", ":", "documents", "=", "super", "(", "CountVectorizer", ",", "self", ")", ".", "fit_transform", "(", "raw_documents", "=", "raw_documents", ",", "y", "=", "y", ")", "s...
1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
Flow.data
Add data to flow
languageflow/flow.py
def data(self, X=None, y=None, sentences=None): """ Add data to flow """ self.X = X self.y = y self.sentences = sentences
def data(self, X=None, y=None, sentences=None): """ Add data to flow """ self.X = X self.y = y self.sentences = sentences
[ "Add", "data", "to", "flow" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/flow.py#L38-L45
[ "def", "data", "(", "self", ",", "X", "=", "None", ",", "y", "=", "None", ",", "sentences", "=", "None", ")", ":", "self", ".", "X", "=", "X", "self", ".", "y", "=", "y", "self", ".", "sentences", "=", "sentences" ]
1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
Flow.transform
Add transformer to flow and apply transformer to data in flow Parameters ---------- transformer : Transformer a transformer to transform data
languageflow/flow.py
def transform(self, transformer): """ Add transformer to flow and apply transformer to data in flow Parameters ---------- transformer : Transformer a transformer to transform data """ self.transformers.append(transformer) from languageflow.tra...
def transform(self, transformer): """ Add transformer to flow and apply transformer to data in flow Parameters ---------- transformer : Transformer a transformer to transform data """ self.transformers.append(transformer) from languageflow.tra...
[ "Add", "transformer", "to", "flow", "and", "apply", "transformer", "to", "data", "in", "flow" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/flow.py#L47-L69
[ "def", "transform", "(", "self", ",", "transformer", ")", ":", "self", ".", "transformers", ".", "append", "(", "transformer", ")", "from", "languageflow", ".", "transformer", ".", "tagged", "import", "TaggedTransformer", "if", "isinstance", "(", "transformer", ...
1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
Flow.train
Train model with transformed data
languageflow/flow.py
def train(self): """ Train model with transformed data """ for i, model in enumerate(self.models): N = [int(i * len(self.y)) for i in self.lc_range] for n in N: X = self.X[:n] y = self.y[:n] e = Experiment(X, y, mode...
def train(self): """ Train model with transformed data """ for i, model in enumerate(self.models): N = [int(i * len(self.y)) for i in self.lc_range] for n in N: X = self.X[:n] y = self.y[:n] e = Experiment(X, y, mode...
[ "Train", "model", "with", "transformed", "data" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/flow.py#L86-L98
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
Flow.export
Export model and transformers to export_folder Parameters ---------- model_name: string name of model to export export_folder: string folder to store exported model and transformers
languageflow/flow.py
def export(self, model_name, export_folder): """ Export model and transformers to export_folder Parameters ---------- model_name: string name of model to export export_folder: string folder to store exported model and transformers """ ...
def export(self, model_name, export_folder): """ Export model and transformers to export_folder Parameters ---------- model_name: string name of model to export export_folder: string folder to store exported model and transformers """ ...
[ "Export", "model", "and", "transformers", "to", "export_folder" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/flow.py#L100-L131
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
TfidfVectorizer.fit_transform
Learn vocabulary and idf, return term-document matrix. This is equivalent to fit followed by transform, but more efficiently implemented. Parameters ---------- raw_documents : iterable an iterable which yields either str, unicode or file objects Returns ...
languageflow/transformer/tfidf.py
def fit_transform(self, raw_documents, y=None): """Learn vocabulary and idf, return term-document matrix. This is equivalent to fit followed by transform, but more efficiently implemented. Parameters ---------- raw_documents : iterable an iterable which yields...
def fit_transform(self, raw_documents, y=None): """Learn vocabulary and idf, return term-document matrix. This is equivalent to fit followed by transform, but more efficiently implemented. Parameters ---------- raw_documents : iterable an iterable which yields...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/transformer/tfidf.py#L138-L173
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
SGDClassifier.fit
Fit linear model with Stochastic Gradient Descent. Parameters ---------- X : {array-like, sparse matrix}, shape (n_samples, n_features) Training data y : numpy array, shape (n_samples,) Target values coef_init : array, shape (n_classes, n_features) ...
languageflow/model/sgd.py
def fit(self, X, y, coef_init=None, intercept_init=None, sample_weight=None): """Fit linear model with Stochastic Gradient Descent. Parameters ---------- X : {array-like, sparse matrix}, shape (n_samples, n_features) Training data y : numpy array, shape ...
def fit(self, X, y, coef_init=None, intercept_init=None, sample_weight=None): """Fit linear model with Stochastic Gradient Descent. Parameters ---------- X : {array-like, sparse matrix}, shape (n_samples, n_features) Training data y : numpy array, shape ...
[ "Fit", "linear", "model", "with", "Stochastic", "Gradient", "Descent", "." ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/model/sgd.py#L21-L50
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
print_cm
pretty print for confusion matrixes
languageflow/evaluation/__init__.py
def print_cm(cm, labels, hide_zeroes=False, hide_diagonal=False, hide_threshold=None): """pretty print for confusion matrixes""" columnwidth = max([len(x) for x in labels] + [5]) # 5 is value length empty_cell = " " * columnwidth # Print header print(" " + empty_cell, end=" ") for label in l...
def print_cm(cm, labels, hide_zeroes=False, hide_diagonal=False, hide_threshold=None): """pretty print for confusion matrixes""" columnwidth = max([len(x) for x in labels] + [5]) # 5 is value length empty_cell = " " * columnwidth # Print header print(" " + empty_cell, end=" ") for label in l...
[ "pretty", "print", "for", "confusion", "matrixes" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/evaluation/__init__.py#L3-L24
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
load_big_file
Workaround for loading a big pickle file. Files over 2GB cause pickle errors on certin Mac and Windows distributions. :param f: :return:
languageflow/file_utils.py
def load_big_file(f): """ Workaround for loading a big pickle file. Files over 2GB cause pickle errors on certin Mac and Windows distributions. :param f: :return: """ logger.info(f'loading file {f}') with open(f, 'r+b') as f_in: # mmap seems to be much more memory efficient b...
def load_big_file(f): """ Workaround for loading a big pickle file. Files over 2GB cause pickle errors on certin Mac and Windows distributions. :param f: :return: """ logger.info(f'loading file {f}') with open(f, 'r+b') as f_in: # mmap seems to be much more memory efficient b...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/file_utils.py#L26-L37
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
url_to_filename
Converts a url into a filename in a reversible way. If `etag` is specified, add it on the end, separated by a period (which necessarily won't appear in the base64-encoded filename). Get rid of the quotes in the etag, since Windows doesn't like them.
languageflow/file_utils.py
def url_to_filename(url: str, etag: str = None) -> str: """ Converts a url into a filename in a reversible way. If `etag` is specified, add it on the end, separated by a period (which necessarily won't appear in the base64-encoded filename). Get rid of the quotes in the etag, since Windows doesn't l...
def url_to_filename(url: str, etag: str = None) -> str: """ Converts a url into a filename in a reversible way. If `etag` is specified, add it on the end, separated by a period (which necessarily won't appear in the base64-encoded filename). Get rid of the quotes in the etag, since Windows doesn't l...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/file_utils.py#L40-L56
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
filename_to_url
Recovers the the url from the encoded filename. Returns it and the ETag (which may be ``None``)
languageflow/file_utils.py
def filename_to_url(filename: str) -> Tuple[str, str]: """ Recovers the the url from the encoded filename. Returns it and the ETag (which may be ``None``) """ try: # If there is an etag, it's everything after the first period decoded, etag = filename.split(".", 1) except ValueErr...
def filename_to_url(filename: str) -> Tuple[str, str]: """ Recovers the the url from the encoded filename. Returns it and the ETag (which may be ``None``) """ try: # If there is an etag, it's everything after the first period decoded, etag = filename.split(".", 1) except ValueErr...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/file_utils.py#L59-L73
[ "def", "filename_to_url", "(", "filename", ":", "str", ")", "->", "Tuple", "[", "str", ",", "str", "]", ":", "try", ":", "# If there is an etag, it's everything after the first period", "decoded", ",", "etag", "=", "filename", ".", "split", "(", "\".\"", ",", ...
1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
cached_path
Given something that might be a URL (or might be a local path), determine which. If it's a URL, download the file and cache it, and return the path to the cached file. If it's already a local path, make sure the file exists and then return the path.
languageflow/file_utils.py
def cached_path(url_or_filename: str, cache_dir: Path) -> Path: """ Given something that might be a URL (or might be a local path), determine which. If it's a URL, download the file and cache it, and return the path to the cached file. If it's already a local path, make sure the file exists and then...
def cached_path(url_or_filename: str, cache_dir: Path) -> Path: """ Given something that might be a URL (or might be a local path), determine which. If it's a URL, download the file and cache it, and return the path to the cached file. If it's already a local path, make sure the file exists and then...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/file_utils.py#L76-L98
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
get_from_cache
Given a URL, look for the corresponding dataset in the local cache. If it's not there, download it. Then return the path to the cached file.
languageflow/file_utils.py
def get_from_cache(url: str, cache_dir: Path = None) -> Path: """ Given a URL, look for the corresponding dataset in the local cache. If it's not there, download it. Then return the path to the cached file. """ cache_dir.mkdir(parents=True, exist_ok=True) filename = re.sub(r'.+/', '', url) ...
def get_from_cache(url: str, cache_dir: Path = None) -> Path: """ Given a URL, look for the corresponding dataset in the local cache. If it's not there, download it. Then return the path to the cached file. """ cache_dir.mkdir(parents=True, exist_ok=True) filename = re.sub(r'.+/', '', url) ...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/file_utils.py#L102-L153
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
CRF.fit
Fit CRF according to X, y Parameters ---------- X : list of text each item is a text y: list each item is either a label (in multi class problem) or list of labels (in multi label problem)
languageflow/model/crf.py
def fit(self, X, y): """Fit CRF according to X, y Parameters ---------- X : list of text each item is a text y: list each item is either a label (in multi class problem) or list of labels (in multi label problem) """ trainer = py...
def fit(self, X, y): """Fit CRF according to X, y Parameters ---------- X : list of text each item is a text y: list each item is either a label (in multi class problem) or list of labels (in multi label problem) """ trainer = py...
[ "Fit", "CRF", "according", "to", "X", "y" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/model/crf.py#L10-L33
[ "def", "fit", "(", "self", ",", "X", ",", "y", ")", ":", "trainer", "=", "pycrfsuite", ".", "Trainer", "(", "verbose", "=", "True", ")", "for", "xseq", ",", "yseq", "in", "zip", "(", "X", ",", "y", ")", ":", "trainer", ".", "append", "(", "xseq...
1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
CRF.predict
Predict class labels for samples in X. Parameters ---------- X : {array-like, sparse matrix}, shape = [n_samples, n_features] Samples.
languageflow/model/crf.py
def predict(self, X): """Predict class labels for samples in X. Parameters ---------- X : {array-like, sparse matrix}, shape = [n_samples, n_features] Samples. """ if isinstance(X[0], list): return [self.estimator.tag(x) for x in X] return...
def predict(self, X): """Predict class labels for samples in X. Parameters ---------- X : {array-like, sparse matrix}, shape = [n_samples, n_features] Samples. """ if isinstance(X[0], list): return [self.estimator.tag(x) for x in X] return...
[ "Predict", "class", "labels", "for", "samples", "in", "X", "." ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/model/crf.py#L35-L45
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
Board.serve
Start LanguageBoard web application Parameters ---------- port: int port to serve web application
languageflow/board/__init__.py
def serve(self, port=62000): """ Start LanguageBoard web application Parameters ---------- port: int port to serve web application """ from http.server import HTTPServer, CGIHTTPRequestHandler os.chdir(self.log_folder) httpd = HTTPServer((''...
def serve(self, port=62000): """ Start LanguageBoard web application Parameters ---------- port: int port to serve web application """ from http.server import HTTPServer, CGIHTTPRequestHandler os.chdir(self.log_folder) httpd = HTTPServer((''...
[ "Start", "LanguageBoard", "web", "application" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/board/__init__.py#L47-L62
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
TaggedCorpus.analyze
:type auto_remove: boolean :param boolean auto_remove: auto remove previous files in analyze folder
languageflow/reader/tagged_corpus.py
def analyze(self, output_folder=".", auto_remove=False): """ :type auto_remove: boolean :param boolean auto_remove: auto remove previous files in analyze folder """ if auto_remove: try: shutil.rmtree(output_folder) except: p...
def analyze(self, output_folder=".", auto_remove=False): """ :type auto_remove: boolean :param boolean auto_remove: auto remove previous files in analyze folder """ if auto_remove: try: shutil.rmtree(output_folder) except: p...
[ ":", "type", "auto_remove", ":", "boolean", ":", "param", "boolean", "auto_remove", ":", "auto", "remove", "previous", "files", "in", "analyze", "folder" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/reader/tagged_corpus.py#L70-L94
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
FastTextClassifier.predict
In order to obtain the most likely label for a list of text Parameters ---------- X : list of string Raw texts Returns ------- C : list of string List labels
languageflow/model/fasttext.py
def predict(self, X): """ In order to obtain the most likely label for a list of text Parameters ---------- X : list of string Raw texts Returns ------- C : list of string List labels """ x = X if not isinstance(X,...
def predict(self, X): """ In order to obtain the most likely label for a list of text Parameters ---------- X : list of string Raw texts Returns ------- C : list of string List labels """ x = X if not isinstance(X,...
[ "In", "order", "to", "obtain", "the", "most", "likely", "label", "for", "a", "list", "of", "text" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/model/fasttext.py#L45-L66
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
CountLogger.log
Parameters ---------- model_folder : string folder contains binaries file of model binary_file : string file path to count transformer binary file log_folder : string log folder
languageflow/log/count.py
def log(model_folder, binary_file="count.transformer.bin", log_folder="analyze"): """ Parameters ---------- model_folder : string folder contains binaries file of model binary_file : string file path to count transformer binary file log...
def log(model_folder, binary_file="count.transformer.bin", log_folder="analyze"): """ Parameters ---------- model_folder : string folder contains binaries file of model binary_file : string file path to count transformer binary file log...
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undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/log/count.py#L13-L40
[ "def", "log", "(", "model_folder", ",", "binary_file", "=", "\"count.transformer.bin\"", ",", "log_folder", "=", "\"analyze\"", ")", ":", "file", "=", "join", "(", "model_folder", ",", "binary_file", ")", "vectorizer", "=", "joblib", ".", "load", "(", "file", ...
1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
KimCNNClassifier.fit
Fit KimCNNClassifier according to X, y Parameters ---------- X : list of string each item is a raw text y : list of string each item is a label
languageflow/model/cnn.py
def fit(self, X, y): """Fit KimCNNClassifier according to X, y Parameters ---------- X : list of string each item is a raw text y : list of string each item is a label """ #################### # Data Loader ################...
def fit(self, X, y): """Fit KimCNNClassifier according to X, y Parameters ---------- X : list of string each item is a raw text y : list of string each item is a label """ #################### # Data Loader ################...
[ "Fit", "KimCNNClassifier", "according", "to", "X", "y" ]
undertheseanlp/languageflow
python
https://github.com/undertheseanlp/languageflow/blob/1436e0bf72803e02ccf727f41e8fc85ba167d9fe/languageflow/model/cnn.py#L103-L177
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1436e0bf72803e02ccf727f41e8fc85ba167d9fe
valid
config_sources
Return the config files for an environment & cluster specific app.
yoconfigurator/smush.py
def config_sources(app, environment, cluster, configs_dirs, app_dir, local=False, build=False): """Return the config files for an environment & cluster specific app.""" sources = [ # Machine-specific (configs_dirs, 'hostname'), (configs_dirs, 'hostname-local'), ...
def config_sources(app, environment, cluster, configs_dirs, app_dir, local=False, build=False): """Return the config files for an environment & cluster specific app.""" sources = [ # Machine-specific (configs_dirs, 'hostname'), (configs_dirs, 'hostname-local'), ...
[ "Return", "the", "config", "files", "for", "an", "environment", "&", "cluster", "specific", "app", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/smush.py#L19-L60
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dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
available_sources
Yield the sources that are present.
yoconfigurator/smush.py
def available_sources(sources): """Yield the sources that are present.""" for dirs, name in sources: for directory in dirs: fn = os.path.join(directory, name) + '.py' if os.path.isfile(fn): yield fn
def available_sources(sources): """Yield the sources that are present.""" for dirs, name in sources: for directory in dirs: fn = os.path.join(directory, name) + '.py' if os.path.isfile(fn): yield fn
[ "Yield", "the", "sources", "that", "are", "present", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/smush.py#L63-L69
[ "def", "available_sources", "(", "sources", ")", ":", "for", "dirs", ",", "name", "in", "sources", ":", "for", "directory", "in", "dirs", ":", "fn", "=", "os", ".", "path", ".", "join", "(", "directory", ",", "name", ")", "+", "'.py'", "if", "os", ...
dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
smush_config
Merge the configuration sources and return the resulting DotDict.
yoconfigurator/smush.py
def smush_config(sources, initial=None): """Merge the configuration sources and return the resulting DotDict.""" if initial is None: initial = {} config = DotDict(initial) for fn in sources: log.debug('Merging %s', fn) mod = get_config_module(fn) config = mod.update(conf...
def smush_config(sources, initial=None): """Merge the configuration sources and return the resulting DotDict.""" if initial is None: initial = {} config = DotDict(initial) for fn in sources: log.debug('Merging %s', fn) mod = get_config_module(fn) config = mod.update(conf...
[ "Merge", "the", "configuration", "sources", "and", "return", "the", "resulting", "DotDict", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/smush.py#L72-L84
[ "def", "smush_config", "(", "sources", ",", "initial", "=", "None", ")", ":", "if", "initial", "is", "None", ":", "initial", "=", "{", "}", "config", "=", "DotDict", "(", "initial", ")", "for", "fn", "in", "sources", ":", "log", ".", "debug", "(", ...
dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
merge_dicts
Merge dictionary d2 into d1, overriding entries in d1 with values from d2. d1 is mutated. _path is for internal, recursive use.
yoconfigurator/dicts.py
def merge_dicts(d1, d2, _path=None): """ Merge dictionary d2 into d1, overriding entries in d1 with values from d2. d1 is mutated. _path is for internal, recursive use. """ if _path is None: _path = () if isinstance(d1, dict) and isinstance(d2, dict): for k, v in d2.items()...
def merge_dicts(d1, d2, _path=None): """ Merge dictionary d2 into d1, overriding entries in d1 with values from d2. d1 is mutated. _path is for internal, recursive use. """ if _path is None: _path = () if isinstance(d1, dict) and isinstance(d2, dict): for k, v in d2.items()...
[ "Merge", "dictionary", "d2", "into", "d1", "overriding", "entries", "in", "d1", "with", "values", "from", "d2", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/dicts.py#L101-L141
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dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
filter_dict
Return a subset of a dictionary using the specified keys.
yoconfigurator/dicts.py
def filter_dict(unfiltered, filter_keys): """Return a subset of a dictionary using the specified keys.""" filtered = DotDict() for k in filter_keys: filtered[k] = unfiltered[k] return filtered
def filter_dict(unfiltered, filter_keys): """Return a subset of a dictionary using the specified keys.""" filtered = DotDict() for k in filter_keys: filtered[k] = unfiltered[k] return filtered
[ "Return", "a", "subset", "of", "a", "dictionary", "using", "the", "specified", "keys", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/dicts.py#L144-L149
[ "def", "filter_dict", "(", "unfiltered", ",", "filter_keys", ")", ":", "filtered", "=", "DotDict", "(", ")", "for", "k", "in", "filter_keys", ":", "filtered", "[", "k", "]", "=", "unfiltered", "[", "k", "]", "return", "filtered" ]
dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
DotDict._convert_item
Convert obj into a DotDict, or list of DotDict. Directly nested lists aren't supported. Returns the result
yoconfigurator/dicts.py
def _convert_item(self, obj): """ Convert obj into a DotDict, or list of DotDict. Directly nested lists aren't supported. Returns the result """ if isinstance(obj, dict) and not isinstance(obj, DotDict): obj = DotDict(obj) elif isinstance(obj, list): ...
def _convert_item(self, obj): """ Convert obj into a DotDict, or list of DotDict. Directly nested lists aren't supported. Returns the result """ if isinstance(obj, dict) and not isinstance(obj, DotDict): obj = DotDict(obj) elif isinstance(obj, list): ...
[ "Convert", "obj", "into", "a", "DotDict", "or", "list", "of", "DotDict", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/dicts.py#L49-L64
[ "def", "_convert_item", "(", "self", ",", "obj", ")", ":", "if", "isinstance", "(", "obj", ",", "dict", ")", "and", "not", "isinstance", "(", "obj", ",", "DotDict", ")", ":", "obj", "=", "DotDict", "(", "obj", ")", "elif", "isinstance", "(", "obj", ...
dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
filter_config
Return a config subset using the filter defined in the deploy config.
yoconfigurator/filter.py
def filter_config(config, deploy_config): """Return a config subset using the filter defined in the deploy config.""" if not os.path.isfile(deploy_config): return DotDict() config_module = get_config_module(deploy_config) return config_module.filter(config)
def filter_config(config, deploy_config): """Return a config subset using the filter defined in the deploy config.""" if not os.path.isfile(deploy_config): return DotDict() config_module = get_config_module(deploy_config) return config_module.filter(config)
[ "Return", "a", "config", "subset", "using", "the", "filter", "defined", "in", "the", "deploy", "config", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/filter.py#L8-L13
[ "def", "filter_config", "(", "config", ",", "deploy_config", ")", ":", "if", "not", "os", ".", "path", ".", "isfile", "(", "deploy_config", ")", ":", "return", "DotDict", "(", ")", "config_module", "=", "get_config_module", "(", "deploy_config", ")", "return...
dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
seeded_auth_token
Return an auth token based on the client+service+seed tuple.
yoconfigurator/credentials.py
def seeded_auth_token(client, service, seed): """Return an auth token based on the client+service+seed tuple.""" hash_func = hashlib.md5() token = ','.join((client, service, seed)).encode('utf-8') hash_func.update(token) return hash_func.hexdigest()
def seeded_auth_token(client, service, seed): """Return an auth token based on the client+service+seed tuple.""" hash_func = hashlib.md5() token = ','.join((client, service, seed)).encode('utf-8') hash_func.update(token) return hash_func.hexdigest()
[ "Return", "an", "auth", "token", "based", "on", "the", "client", "+", "service", "+", "seed", "tuple", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/credentials.py#L4-L9
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dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
write_config
Write configuration to the applicaiton directory.
yoconfigurator/base.py
def write_config(config, app_dir, filename='configuration.json'): """Write configuration to the applicaiton directory.""" path = os.path.join(app_dir, filename) with open(path, 'w') as f: json.dump( config, f, indent=4, cls=DetectMissingEncoder, separators=(',', ': '))
def write_config(config, app_dir, filename='configuration.json'): """Write configuration to the applicaiton directory.""" path = os.path.join(app_dir, filename) with open(path, 'w') as f: json.dump( config, f, indent=4, cls=DetectMissingEncoder, separators=(',', ': '))
[ "Write", "configuration", "to", "the", "applicaiton", "directory", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/base.py#L27-L33
[ "def", "write_config", "(", "config", ",", "app_dir", ",", "filename", "=", "'configuration.json'", ")", ":", "path", "=", "os", ".", "path", ".", "join", "(", "app_dir", ",", "filename", ")", "with", "open", "(", "path", ",", "'w'", ")", "as", "f", ...
dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
get_config_module
Imports the config file to yoconfigurator.configs.<config_basename>.
yoconfigurator/base.py
def get_config_module(config_pathname): """Imports the config file to yoconfigurator.configs.<config_basename>.""" configs_mod = 'yoconfigurator.configs' if configs_mod not in sys.modules: sys.modules[configs_mod] = types.ModuleType(configs_mod) module_name = os.path.basename(config_pathname).rs...
def get_config_module(config_pathname): """Imports the config file to yoconfigurator.configs.<config_basename>.""" configs_mod = 'yoconfigurator.configs' if configs_mod not in sys.modules: sys.modules[configs_mod] = types.ModuleType(configs_mod) module_name = os.path.basename(config_pathname).rs...
[ "Imports", "the", "config", "file", "to", "yoconfigurator", ".", "configs", ".", "<config_basename", ">", "." ]
yola/yoconfigurator
python
https://github.com/yola/yoconfigurator/blob/dfb60fa1e30ae7cfec2526bb101fc205f5952639/yoconfigurator/base.py#L42-L49
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dfb60fa1e30ae7cfec2526bb101fc205f5952639
valid
validate_date
Return True if valid, raise ValueError if not
pypinfo/core.py
def validate_date(date_text): """Return True if valid, raise ValueError if not""" try: if int(date_text) < 0: return True except ValueError: pass try: datetime.strptime(date_text, '%Y-%m-%d') return True except ValueError: pass raise ValueErr...
def validate_date(date_text): """Return True if valid, raise ValueError if not""" try: if int(date_text) < 0: return True except ValueError: pass try: datetime.strptime(date_text, '%Y-%m-%d') return True except ValueError: pass raise ValueErr...
[ "Return", "True", "if", "valid", "raise", "ValueError", "if", "not" ]
ofek/pypinfo
python
https://github.com/ofek/pypinfo/blob/48d56e690d7667ae5854752c3a2dc07e321d5637/pypinfo/core.py#L48-L62
[ "def", "validate_date", "(", "date_text", ")", ":", "try", ":", "if", "int", "(", "date_text", ")", "<", "0", ":", "return", "True", "except", "ValueError", ":", "pass", "try", ":", "datetime", ".", "strptime", "(", "date_text", ",", "'%Y-%m-%d'", ")", ...
48d56e690d7667ae5854752c3a2dc07e321d5637
valid
get_download_total
Return the total downloads, and the downloads column
pypinfo/core.py
def get_download_total(rows): """Return the total downloads, and the downloads column""" headers = rows.pop(0) index = headers.index('download_count') total_downloads = sum(int(row[index]) for row in rows) rows.insert(0, headers) return total_downloads, index
def get_download_total(rows): """Return the total downloads, and the downloads column""" headers = rows.pop(0) index = headers.index('download_count') total_downloads = sum(int(row[index]) for row in rows) rows.insert(0, headers) return total_downloads, index
[ "Return", "the", "total", "downloads", "and", "the", "downloads", "column" ]
ofek/pypinfo
python
https://github.com/ofek/pypinfo/blob/48d56e690d7667ae5854752c3a2dc07e321d5637/pypinfo/core.py#L163-L170
[ "def", "get_download_total", "(", "rows", ")", ":", "headers", "=", "rows", ".", "pop", "(", "0", ")", "index", "=", "headers", ".", "index", "(", "'download_count'", ")", "total_downloads", "=", "sum", "(", "int", "(", "row", "[", "index", "]", ")", ...
48d56e690d7667ae5854752c3a2dc07e321d5637
valid
add_download_total
Add a final row to rows showing the total downloads
pypinfo/core.py
def add_download_total(rows): """Add a final row to rows showing the total downloads""" total_row = [""] * len(rows[0]) total_row[0] = "Total" total_downloads, downloads_column = get_download_total(rows) total_row[downloads_column] = str(total_downloads) rows.append(total_row) return rows
def add_download_total(rows): """Add a final row to rows showing the total downloads""" total_row = [""] * len(rows[0]) total_row[0] = "Total" total_downloads, downloads_column = get_download_total(rows) total_row[downloads_column] = str(total_downloads) rows.append(total_row) return rows
[ "Add", "a", "final", "row", "to", "rows", "showing", "the", "total", "downloads" ]
ofek/pypinfo
python
https://github.com/ofek/pypinfo/blob/48d56e690d7667ae5854752c3a2dc07e321d5637/pypinfo/core.py#L173-L181
[ "def", "add_download_total", "(", "rows", ")", ":", "total_row", "=", "[", "\"\"", "]", "*", "len", "(", "rows", "[", "0", "]", ")", "total_row", "[", "0", "]", "=", "\"Total\"", "total_downloads", ",", "downloads_column", "=", "get_download_total", "(", ...
48d56e690d7667ae5854752c3a2dc07e321d5637
valid
pypinfo
Valid fields are:\n project | version | file | pyversion | percent3 | percent2 | impl | impl-version |\n openssl | date | month | year | country | installer | installer-version |\n setuptools-version | system | system-release | distro | distro-version | cpu
pypinfo/cli.py
def pypinfo( ctx, project, fields, auth, run, json, indent, timeout, limit, days, start_date, end_date, where, order, all_installers, percent, markdown, ): """Valid fields are:\n project | version | file | pyversion | percent3 | percent2 | impl...
def pypinfo( ctx, project, fields, auth, run, json, indent, timeout, limit, days, start_date, end_date, where, order, all_installers, percent, markdown, ): """Valid fields are:\n project | version | file | pyversion | percent3 | percent2 | impl...
[ "Valid", "fields", "are", ":", "\\", "n", "project", "|", "version", "|", "file", "|", "pyversion", "|", "percent3", "|", "percent2", "|", "impl", "|", "impl", "-", "version", "|", "\\", "n", "openssl", "|", "date", "|", "month", "|", "year", "|", ...
ofek/pypinfo
python
https://github.com/ofek/pypinfo/blob/48d56e690d7667ae5854752c3a2dc07e321d5637/pypinfo/cli.py#L89-L194
[ "def", "pypinfo", "(", "ctx", ",", "project", ",", "fields", ",", "auth", ",", "run", ",", "json", ",", "indent", ",", "timeout", ",", "limit", ",", "days", ",", "start_date", ",", "end_date", ",", "where", ",", "order", ",", "all_installers", ",", "...
48d56e690d7667ae5854752c3a2dc07e321d5637
valid
find_and_patch_entry
Modify soup so Dash.app can generate TOCs on the fly.
src/doc2dash/parsers/intersphinx.py
def find_and_patch_entry(soup, entry): """ Modify soup so Dash.app can generate TOCs on the fly. """ link = soup.find("a", {"class": "headerlink"}, href="#" + entry.anchor) tag = soup.new_tag("a") tag["name"] = APPLE_REF_TEMPLATE.format(entry.type, entry.name) if link: link.parent.in...
def find_and_patch_entry(soup, entry): """ Modify soup so Dash.app can generate TOCs on the fly. """ link = soup.find("a", {"class": "headerlink"}, href="#" + entry.anchor) tag = soup.new_tag("a") tag["name"] = APPLE_REF_TEMPLATE.format(entry.type, entry.name) if link: link.parent.in...
[ "Modify", "soup", "so", "Dash", ".", "app", "can", "generate", "TOCs", "on", "the", "fly", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/parsers/intersphinx.py#L104-L118
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659a66e237eb0faa08e81094fc4140623b418952
valid
inv_entry_to_path
Determine the path from the intersphinx inventory entry Discard the anchors between head and tail to make it compatible with situations where extra meta information is encoded.
src/doc2dash/parsers/intersphinx.py
def inv_entry_to_path(data): """ Determine the path from the intersphinx inventory entry Discard the anchors between head and tail to make it compatible with situations where extra meta information is encoded. """ path_tuple = data[2].split("#") if len(path_tuple) > 1: path_str = "#...
def inv_entry_to_path(data): """ Determine the path from the intersphinx inventory entry Discard the anchors between head and tail to make it compatible with situations where extra meta information is encoded. """ path_tuple = data[2].split("#") if len(path_tuple) > 1: path_str = "#...
[ "Determine", "the", "path", "from", "the", "intersphinx", "inventory", "entry" ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/parsers/intersphinx.py#L121-L133
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659a66e237eb0faa08e81094fc4140623b418952
valid
main
Convert docs from SOURCE to Dash.app's docset format.
src/doc2dash/__main__.py
def main( source, force, name, quiet, verbose, destination, add_to_dash, add_to_global, icon, index_page, enable_js, online_redirect_url, parser, ): """ Convert docs from SOURCE to Dash.app's docset format. """ try: logging.config.dictConfig( ...
def main( source, force, name, quiet, verbose, destination, add_to_dash, add_to_global, icon, index_page, enable_js, online_redirect_url, parser, ): """ Convert docs from SOURCE to Dash.app's docset format. """ try: logging.config.dictConfig( ...
[ "Convert", "docs", "from", "SOURCE", "to", "Dash", ".", "app", "s", "docset", "format", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/__main__.py#L140-L236
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659a66e237eb0faa08e81094fc4140623b418952
valid
create_log_config
We use logging's levels as an easy-to-use verbosity controller.
src/doc2dash/__main__.py
def create_log_config(verbose, quiet): """ We use logging's levels as an easy-to-use verbosity controller. """ if verbose and quiet: raise ValueError( "Supplying both --quiet and --verbose makes no sense." ) elif verbose: level = logging.DEBUG elif quiet: ...
def create_log_config(verbose, quiet): """ We use logging's levels as an easy-to-use verbosity controller. """ if verbose and quiet: raise ValueError( "Supplying both --quiet and --verbose makes no sense." ) elif verbose: level = logging.DEBUG elif quiet: ...
[ "We", "use", "logging", "s", "levels", "as", "an", "easy", "-", "to", "-", "use", "verbosity", "controller", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/__main__.py#L239-L267
[ "def", "create_log_config", "(", "verbose", ",", "quiet", ")", ":", "if", "verbose", "and", "quiet", ":", "raise", "ValueError", "(", "\"Supplying both --quiet and --verbose makes no sense.\"", ")", "elif", "verbose", ":", "level", "=", "logging", ".", "DEBUG", "e...
659a66e237eb0faa08e81094fc4140623b418952
valid
setup_paths
Determine source and destination using the options.
src/doc2dash/__main__.py
def setup_paths(source, destination, name, add_to_global, force): """ Determine source and destination using the options. """ if source[-1] == "/": source = source[:-1] if not name: name = os.path.split(source)[-1] elif name.endswith(".docset"): name = name.replace(".docs...
def setup_paths(source, destination, name, add_to_global, force): """ Determine source and destination using the options. """ if source[-1] == "/": source = source[:-1] if not name: name = os.path.split(source)[-1] elif name.endswith(".docset"): name = name.replace(".docs...
[ "Determine", "source", "and", "destination", "using", "the", "options", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/__main__.py#L270-L293
[ "def", "setup_paths", "(", "source", ",", "destination", ",", "name", ",", "add_to_global", ",", "force", ")", ":", "if", "source", "[", "-", "1", "]", "==", "\"/\"", ":", "source", "=", "source", "[", ":", "-", "1", "]", "if", "not", "name", ":", ...
659a66e237eb0faa08e81094fc4140623b418952
valid
prepare_docset
Create boilerplate files & directories and copy vanilla docs inside. Return a tuple of path to resources and connection to sqlite db.
src/doc2dash/__main__.py
def prepare_docset( source, dest, name, index_page, enable_js, online_redirect_url ): """ Create boilerplate files & directories and copy vanilla docs inside. Return a tuple of path to resources and connection to sqlite db. """ resources = os.path.join(dest, "Contents", "Resources") docs = ...
def prepare_docset( source, dest, name, index_page, enable_js, online_redirect_url ): """ Create boilerplate files & directories and copy vanilla docs inside. Return a tuple of path to resources and connection to sqlite db. """ resources = os.path.join(dest, "Contents", "Resources") docs = ...
[ "Create", "boilerplate", "files", "&", "directories", "and", "copy", "vanilla", "docs", "inside", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/__main__.py#L308-L346
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659a66e237eb0faa08e81094fc4140623b418952
valid
add_icon
Add icon to docset
src/doc2dash/__main__.py
def add_icon(icon_data, dest): """ Add icon to docset """ with open(os.path.join(dest, "icon.png"), "wb") as f: f.write(icon_data)
def add_icon(icon_data, dest): """ Add icon to docset """ with open(os.path.join(dest, "icon.png"), "wb") as f: f.write(icon_data)
[ "Add", "icon", "to", "docset" ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/__main__.py#L349-L354
[ "def", "add_icon", "(", "icon_data", ",", "dest", ")", ":", "with", "open", "(", "os", ".", "path", ".", "join", "(", "dest", ",", "\"icon.png\"", ")", ",", "\"wb\"", ")", "as", "f", ":", "f", ".", "write", "(", "icon_data", ")" ]
659a66e237eb0faa08e81094fc4140623b418952
valid
patch_anchors
Consume ``ParseEntry``s then patch docs for TOCs by calling *parser*'s ``find_and_patch_entry``.
src/doc2dash/parsers/utils.py
def patch_anchors(parser, show_progressbar): """ Consume ``ParseEntry``s then patch docs for TOCs by calling *parser*'s ``find_and_patch_entry``. """ files = defaultdict(list) try: while True: pentry = (yield) try: fname, anchor = pentry.path.split...
def patch_anchors(parser, show_progressbar): """ Consume ``ParseEntry``s then patch docs for TOCs by calling *parser*'s ``find_and_patch_entry``. """ files = defaultdict(list) try: while True: pentry = (yield) try: fname, anchor = pentry.path.split...
[ "Consume", "ParseEntry", "s", "then", "patch", "docs", "for", "TOCs", "by", "calling", "*", "parser", "*", "s", "find_and_patch_entry", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/parsers/utils.py#L89-L133
[ "def", "patch_anchors", "(", "parser", ",", "show_progressbar", ")", ":", "files", "=", "defaultdict", "(", "list", ")", "try", ":", "while", "True", ":", "pentry", "=", "(", "yield", ")", "try", ":", "fname", ",", "anchor", "=", "pentry", ".", "path",...
659a66e237eb0faa08e81094fc4140623b418952
valid
has_file_with
Check whether *filename* in *path* contains the string *content*.
src/doc2dash/parsers/utils.py
def has_file_with(path, filename, content): """ Check whether *filename* in *path* contains the string *content*. """ try: with open(os.path.join(path, filename), "rb") as f: return content in f.read() except IOError as e: if e.errno == errno.ENOENT: return Fa...
def has_file_with(path, filename, content): """ Check whether *filename* in *path* contains the string *content*. """ try: with open(os.path.join(path, filename), "rb") as f: return content in f.read() except IOError as e: if e.errno == errno.ENOENT: return Fa...
[ "Check", "whether", "*", "filename", "*", "in", "*", "path", "*", "contains", "the", "string", "*", "content", "*", "." ]
hynek/doc2dash
python
https://github.com/hynek/doc2dash/blob/659a66e237eb0faa08e81094fc4140623b418952/src/doc2dash/parsers/utils.py#L136-L147
[ "def", "has_file_with", "(", "path", ",", "filename", ",", "content", ")", ":", "try", ":", "with", "open", "(", "os", ".", "path", ".", "join", "(", "path", ",", "filename", ")", ",", "\"rb\"", ")", "as", "f", ":", "return", "content", "in", "f", ...
659a66e237eb0faa08e81094fc4140623b418952
valid
Bdb.run_cell
Run the Cell code using the IPython globals and locals Args: cell (str): Python code to be executed
nbtutor/ipython/debugger.py
def run_cell(self, cell): """Run the Cell code using the IPython globals and locals Args: cell (str): Python code to be executed """ globals = self.ipy_shell.user_global_ns locals = self.ipy_shell.user_ns globals.update({ "__ipy_scope__": None, ...
def run_cell(self, cell): """Run the Cell code using the IPython globals and locals Args: cell (str): Python code to be executed """ globals = self.ipy_shell.user_global_ns locals = self.ipy_shell.user_ns globals.update({ "__ipy_scope__": None, ...
[ "Run", "the", "Cell", "code", "using", "the", "IPython", "globals", "and", "locals" ]
lgpage/nbtutor
python
https://github.com/lgpage/nbtutor/blob/07798a044cf6e1fd4eaac2afddeef3e13348dbcd/nbtutor/ipython/debugger.py#L35-L54
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07798a044cf6e1fd4eaac2afddeef3e13348dbcd