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valid
PyIndenterMode.indent
Performs an indentation
pyqode/python/modes/indenter.py
def indent(self): """ Performs an indentation """ if not self.tab_always_indent: super(PyIndenterMode, self).indent() else: cursor = self.editor.textCursor() assert isinstance(cursor, QtGui.QTextCursor) if cursor.hasSelection(): ...
def indent(self): """ Performs an indentation """ if not self.tab_always_indent: super(PyIndenterMode, self).indent() else: cursor = self.editor.textCursor() assert isinstance(cursor, QtGui.QTextCursor) if cursor.hasSelection(): ...
[ "Performs", "an", "indentation" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/indenter.py#L38-L58
[ "def", "indent", "(", "self", ")", ":", "if", "not", "self", ".", "tab_always_indent", ":", "super", "(", "PyIndenterMode", ",", "self", ")", ".", "indent", "(", ")", "else", ":", "cursor", "=", "self", ".", "editor", ".", "textCursor", "(", ")", "as...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyIndenterMode.unindent
Performs an un-indentation
pyqode/python/modes/indenter.py
def unindent(self): """ Performs an un-indentation """ if self.tab_always_indent: cursor = self.editor.textCursor() if not cursor.hasSelection(): cursor.select(cursor.LineUnderCursor) self.unindent_selection(cursor) else: ...
def unindent(self): """ Performs an un-indentation """ if self.tab_always_indent: cursor = self.editor.textCursor() if not cursor.hasSelection(): cursor.select(cursor.LineUnderCursor) self.unindent_selection(cursor) else: ...
[ "Performs", "an", "un", "-", "indentation" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/indenter.py#L60-L70
[ "def", "unindent", "(", "self", ")", ":", "if", "self", ".", "tab_always_indent", ":", "cursor", "=", "self", ".", "editor", ".", "textCursor", "(", ")", "if", "not", "cursor", ".", "hasSelection", "(", ")", ":", "cursor", ".", "select", "(", "cursor",...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyAutoIndentMode._handle_indent_between_paren
Handle indent between symbols such as parenthesis, braces,...
pyqode/python/modes/autoindent.py
def _handle_indent_between_paren(self, column, line, parent_impl, tc): """ Handle indent between symbols such as parenthesis, braces,... """ pre, post = parent_impl next_char = self._get_next_char(tc) prev_char = self._get_prev_char(tc) prev_open = prev_char in ['...
def _handle_indent_between_paren(self, column, line, parent_impl, tc): """ Handle indent between symbols such as parenthesis, braces,... """ pre, post = parent_impl next_char = self._get_next_char(tc) prev_char = self._get_prev_char(tc) prev_open = prev_char in ['...
[ "Handle", "indent", "between", "symbols", "such", "as", "parenthesis", "braces", "..." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/autoindent.py#L249-L298
[ "def", "_handle_indent_between_paren", "(", "self", ",", "column", ",", "line", ",", "parent_impl", ",", "tc", ")", ":", "pre", ",", "post", "=", "parent_impl", "next_char", "=", "self", ".", "_get_next_char", "(", "tc", ")", "prev_char", "=", "self", ".",...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyAutoIndentMode._at_block_start
Improve QTextCursor.atBlockStart to ignore spaces
pyqode/python/modes/autoindent.py
def _at_block_start(tc, line): """ Improve QTextCursor.atBlockStart to ignore spaces """ if tc.atBlockStart(): return True column = tc.columnNumber() indentation = len(line) - len(line.lstrip()) return column <= indentation
def _at_block_start(tc, line): """ Improve QTextCursor.atBlockStart to ignore spaces """ if tc.atBlockStart(): return True column = tc.columnNumber() indentation = len(line) - len(line.lstrip()) return column <= indentation
[ "Improve", "QTextCursor", ".", "atBlockStart", "to", "ignore", "spaces" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/autoindent.py#L301-L309
[ "def", "_at_block_start", "(", "tc", ",", "line", ")", ":", "if", "tc", ".", "atBlockStart", "(", ")", ":", "return", "True", "column", "=", "tc", ".", "columnNumber", "(", ")", "indentation", "=", "len", "(", "line", ")", "-", "len", "(", "line", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyFileManager.detect_encoding
For the implementation of encoding definitions in Python, look at: - http://www.python.org/dev/peps/pep-0263/ .. note:: code taken and adapted from ```jedi.common.source_to_unicode.detect_encoding```
pyqode/python/managers/file.py
def detect_encoding(self, path): """ For the implementation of encoding definitions in Python, look at: - http://www.python.org/dev/peps/pep-0263/ .. note:: code taken and adapted from ```jedi.common.source_to_unicode.detect_encoding``` """ with open(path, 'r...
def detect_encoding(self, path): """ For the implementation of encoding definitions in Python, look at: - http://www.python.org/dev/peps/pep-0263/ .. note:: code taken and adapted from ```jedi.common.source_to_unicode.detect_encoding``` """ with open(path, 'r...
[ "For", "the", "implementation", "of", "encoding", "definitions", "in", "Python", "look", "at", ":", "-", "http", ":", "//", "www", ".", "python", ".", "org", "/", "dev", "/", "peps", "/", "pep", "-", "0263", "/" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/managers/file.py#L23-L47
[ "def", "detect_encoding", "(", "self", ",", "path", ")", ":", "with", "open", "(", "path", ",", "'rb'", ")", "as", "file", ":", "source", "=", "file", ".", "read", "(", ")", "# take care of line encodings (not in jedi)", "source", "=", "source", ".", "repl...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
CommentsMode.on_state_changed
Called when the mode is activated/deactivated
pyqode/python/modes/comments.py
def on_state_changed(self, state): """ Called when the mode is activated/deactivated """ if state: self.action.triggered.connect(self.comment) self.editor.add_action(self.action, sub_menu='Python') if 'pyqt5' in os.environ['QT_API'].lower(): ...
def on_state_changed(self, state): """ Called when the mode is activated/deactivated """ if state: self.action.triggered.connect(self.comment) self.editor.add_action(self.action, sub_menu='Python') if 'pyqt5' in os.environ['QT_API'].lower(): ...
[ "Called", "when", "the", "mode", "is", "activated", "/", "deactivated" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/comments.py#L19-L32
[ "def", "on_state_changed", "(", "self", ",", "state", ")", ":", "if", "state", ":", "self", ".", "action", ".", "triggered", ".", "connect", "(", "self", ".", "comment", ")", "self", ".", "editor", ".", "add_action", "(", "self", ".", "action", ",", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
CommentsMode.comment
Comments/Uncomments the selected lines or the current lines if there is no selection.
pyqode/python/modes/comments.py
def comment(self): """ Comments/Uncomments the selected lines or the current lines if there is no selection. """ cursor = self.editor.textCursor() # get the indent at which comment should be inserted and whether to # comment or uncomment the selected text ...
def comment(self): """ Comments/Uncomments the selected lines or the current lines if there is no selection. """ cursor = self.editor.textCursor() # get the indent at which comment should be inserted and whether to # comment or uncomment the selected text ...
[ "Comments", "/", "Uncomments", "the", "selected", "lines", "or", "the", "current", "lines", "if", "there", "is", "no", "selection", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/comments.py#L78-L108
[ "def", "comment", "(", "self", ")", ":", "cursor", "=", "self", ".", "editor", ".", "textCursor", "(", ")", "# get the indent at which comment should be inserted and whether to", "# comment or uncomment the selected text", "indent", ",", "comment", ",", "nb_lines", "=", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyCodeEditBase.setPlainText
Extends QCodeEdit.setPlainText to allow user to setPlainText without mimetype (since the python syntax highlighter does not use it).
pyqode/python/widgets/code_edit.py
def setPlainText(self, txt, mimetype='text/x-python', encoding='utf-8'): """ Extends QCodeEdit.setPlainText to allow user to setPlainText without mimetype (since the python syntax highlighter does not use it). """ try: self.syntax_highlighter.docstrings[:] = [] ...
def setPlainText(self, txt, mimetype='text/x-python', encoding='utf-8'): """ Extends QCodeEdit.setPlainText to allow user to setPlainText without mimetype (since the python syntax highlighter does not use it). """ try: self.syntax_highlighter.docstrings[:] = [] ...
[ "Extends", "QCodeEdit", ".", "setPlainText", "to", "allow", "user", "to", "setPlainText", "without", "mimetype", "(", "since", "the", "python", "syntax", "highlighter", "does", "not", "use", "it", ")", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/widgets/code_edit.py#L34-L44
[ "def", "setPlainText", "(", "self", ",", "txt", ",", "mimetype", "=", "'text/x-python'", ",", "encoding", "=", "'utf-8'", ")", ":", "try", ":", "self", ".", "syntax_highlighter", ".", "docstrings", "[", ":", "]", "=", "[", "]", "self", ".", "syntax_highl...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyConsole.update_terminal_colors
Update terminal color scheme based on the pygments color scheme colors
pyqode/python/widgets/console.py
def update_terminal_colors(self): """ Update terminal color scheme based on the pygments color scheme colors """ self.color_scheme = self.create_color_scheme( background=self.syntax_highlighter.color_scheme.background, foreground=self.syntax_highlighter.color_sche...
def update_terminal_colors(self): """ Update terminal color scheme based on the pygments color scheme colors """ self.color_scheme = self.create_color_scheme( background=self.syntax_highlighter.color_scheme.background, foreground=self.syntax_highlighter.color_sche...
[ "Update", "terminal", "color", "scheme", "based", "on", "the", "pygments", "color", "scheme", "colors" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/widgets/console.py#L71-L77
[ "def", "update_terminal_colors", "(", "self", ")", ":", "self", ".", "color_scheme", "=", "self", ".", "create_color_scheme", "(", "background", "=", "self", ".", "syntax_highlighter", ".", "color_scheme", ".", "background", ",", "foreground", "=", "self", ".", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyInteractiveConsole.mouseMoveEvent
Extends mouseMoveEvent to display a pointing hand cursor when the mouse cursor is over a file location
pyqode/python/widgets/interactive.py
def mouseMoveEvent(self, e): """ Extends mouseMoveEvent to display a pointing hand cursor when the mouse cursor is over a file location """ super(PyInteractiveConsole, self).mouseMoveEvent(e) cursor = self.cursorForPosition(e.pos()) assert isinstance(cursor, QtGui...
def mouseMoveEvent(self, e): """ Extends mouseMoveEvent to display a pointing hand cursor when the mouse cursor is over a file location """ super(PyInteractiveConsole, self).mouseMoveEvent(e) cursor = self.cursorForPosition(e.pos()) assert isinstance(cursor, QtGui...
[ "Extends", "mouseMoveEvent", "to", "display", "a", "pointing", "hand", "cursor", "when", "the", "mouse", "cursor", "is", "over", "a", "file", "location" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/widgets/interactive.py#L97-L113
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821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PyInteractiveConsole.mousePressEvent
Emits open_file_requested if the press event occured over a file location string.
pyqode/python/widgets/interactive.py
def mousePressEvent(self, e): """ Emits open_file_requested if the press event occured over a file location string. """ super(PyInteractiveConsole, self).mousePressEvent(e) cursor = self.cursorForPosition(e.pos()) p = cursor.positionInBlock() usd = cursor...
def mousePressEvent(self, e): """ Emits open_file_requested if the press event occured over a file location string. """ super(PyInteractiveConsole, self).mousePressEvent(e) cursor = self.cursorForPosition(e.pos()) p = cursor.positionInBlock() usd = cursor...
[ "Emits", "open_file_requested", "if", "the", "press", "event", "occured", "over", "a", "file", "location", "string", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/widgets/interactive.py#L115-L126
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821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
PythonFoldDetector.detect_fold_level
Perfoms fold level detection for current block (take previous block into account). :param prev_block: previous block, None if `block` is the first block. :param block: block to analyse. :return: block fold level
pyqode/python/folding.py
def detect_fold_level(self, prev_block, block): """ Perfoms fold level detection for current block (take previous block into account). :param prev_block: previous block, None if `block` is the first block. :param block: block to analyse. :return: block fold level ...
def detect_fold_level(self, prev_block, block): """ Perfoms fold level detection for current block (take previous block into account). :param prev_block: previous block, None if `block` is the first block. :param block: block to analyse. :return: block fold level ...
[ "Perfoms", "fold", "level", "detection", "for", "current", "block", "(", "take", "previous", "block", "into", "account", ")", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/folding.py#L63-L85
[ "def", "detect_fold_level", "(", "self", ",", "prev_block", ",", "block", ")", ":", "# Python is an indent based language so use indentation for folding", "# makes sense but we restrict new regions to indentation after a ':',", "# that way only the real logical blocks are displayed.", "lvl...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.setup_actions
Connects slots to signals
examples/pynotepad/pynotepad/main_window.py
def setup_actions(self): """ Connects slots to signals """ self.actionOpen.triggered.connect(self.on_open) self.actionNew.triggered.connect(self.on_new) self.actionSave.triggered.connect(self.on_save) self.actionSave_as.triggered.connect(self.on_save_as) self.actionQuit.t...
def setup_actions(self): """ Connects slots to signals """ self.actionOpen.triggered.connect(self.on_open) self.actionNew.triggered.connect(self.on_new) self.actionSave.triggered.connect(self.on_save) self.actionSave_as.triggered.connect(self.on_save_as) self.actionQuit.t...
[ "Connects", "slots", "to", "signals" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L63-L77
[ "def", "setup_actions", "(", "self", ")", ":", "self", ".", "actionOpen", ".", "triggered", ".", "connect", "(", "self", ".", "on_open", ")", "self", ".", "actionNew", ".", "triggered", ".", "connect", "(", "self", ".", "on_new", ")", "self", ".", "act...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.setup_editor
Setup the python editor, run the server and connect a few signals. :param editor: editor to setup.
examples/pynotepad/pynotepad/main_window.py
def setup_editor(self, editor): """ Setup the python editor, run the server and connect a few signals. :param editor: editor to setup. """ editor.cursorPositionChanged.connect(self.on_cursor_pos_changed) try: m = editor.modes.get(modes.GoToAssignmentsMode) ...
def setup_editor(self, editor): """ Setup the python editor, run the server and connect a few signals. :param editor: editor to setup. """ editor.cursorPositionChanged.connect(self.on_cursor_pos_changed) try: m = editor.modes.get(modes.GoToAssignmentsMode) ...
[ "Setup", "the", "python", "editor", "run", "the", "server", "and", "connect", "a", "few", "signals", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L103-L116
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821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.open_file
Creates a new GenericCodeEdit, opens the requested file and adds it to the tab widget. :param path: Path of the file to open :return The opened editor if open succeeded.
examples/pynotepad/pynotepad/main_window.py
def open_file(self, path, line=None): """ Creates a new GenericCodeEdit, opens the requested file and adds it to the tab widget. :param path: Path of the file to open :return The opened editor if open succeeded. """ editor = None if path: int...
def open_file(self, path, line=None): """ Creates a new GenericCodeEdit, opens the requested file and adds it to the tab widget. :param path: Path of the file to open :return The opened editor if open succeeded. """ editor = None if path: int...
[ "Creates", "a", "new", "GenericCodeEdit", "opens", "the", "requested", "file", "and", "adds", "it", "to", "the", "tab", "widget", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L118-L139
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821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow._get_backend_parameters
Gets the pyqode backend parameters (interpreter and script).
examples/pynotepad/pynotepad/main_window.py
def _get_backend_parameters(self): """ Gets the pyqode backend parameters (interpreter and script). """ frozen = hasattr(sys, 'frozen') interpreter = Settings().interpreter if frozen: interpreter = None pyserver = server.__file__ if interpreter is not ...
def _get_backend_parameters(self): """ Gets the pyqode backend parameters (interpreter and script). """ frozen = hasattr(sys, 'frozen') interpreter = Settings().interpreter if frozen: interpreter = None pyserver = server.__file__ if interpreter is not ...
[ "Gets", "the", "pyqode", "backend", "parameters", "(", "interpreter", "and", "script", ")", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L141-L151
[ "def", "_get_backend_parameters", "(", "self", ")", ":", "frozen", "=", "hasattr", "(", "sys", ",", "'frozen'", ")", "interpreter", "=", "Settings", "(", ")", ".", "interpreter", "if", "frozen", ":", "interpreter", "=", "None", "pyserver", "=", "server", "...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.on_new
Add a new empty code editor to the tab widget
examples/pynotepad/pynotepad/main_window.py
def on_new(self): """ Add a new empty code editor to the tab widget """ interpreter, pyserver, args = self._get_backend_parameters() self.setup_editor(self.tabWidget.create_new_document( extension='.py', interpreter=interpreter, server_script=pyserver, arg...
def on_new(self): """ Add a new empty code editor to the tab widget """ interpreter, pyserver, args = self._get_backend_parameters() self.setup_editor(self.tabWidget.create_new_document( extension='.py', interpreter=interpreter, server_script=pyserver, arg...
[ "Add", "a", "new", "empty", "code", "editor", "to", "the", "tab", "widget" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L153-L162
[ "def", "on_new", "(", "self", ")", ":", "interpreter", ",", "pyserver", ",", "args", "=", "self", ".", "_get_backend_parameters", "(", ")", "self", ".", "setup_editor", "(", "self", ".", "tabWidget", ".", "create_new_document", "(", "extension", "=", "'.py'"...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.on_open
Shows an open file dialog and open the file if the dialog was accepted.
examples/pynotepad/pynotepad/main_window.py
def on_open(self): """ Shows an open file dialog and open the file if the dialog was accepted. """ filename, filter = QtWidgets.QFileDialog.getOpenFileName(self, 'Open') if filename: self.open_file(filename) self.actionRun.setEnabled(True) sel...
def on_open(self): """ Shows an open file dialog and open the file if the dialog was accepted. """ filename, filter = QtWidgets.QFileDialog.getOpenFileName(self, 'Open') if filename: self.open_file(filename) self.actionRun.setEnabled(True) sel...
[ "Shows", "an", "open", "file", "dialog", "and", "open", "the", "file", "if", "the", "dialog", "was", "accepted", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L164-L174
[ "def", "on_open", "(", "self", ")", ":", "filename", ",", "filter", "=", "QtWidgets", ".", "QFileDialog", ".", "getOpenFileName", "(", "self", ",", "'Open'", ")", "if", "filename", ":", "self", ".", "open_file", "(", "filename", ")", "self", ".", "action...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.on_save_as
Save the current editor document as.
examples/pynotepad/pynotepad/main_window.py
def on_save_as(self): """ Save the current editor document as. """ path = self.tabWidget.current_widget().file.path path = os.path.dirname(path) if path else '' filename, filter = QtWidgets.QFileDialog.getSaveFileName( self, 'Save', path) if filename: ...
def on_save_as(self): """ Save the current editor document as. """ path = self.tabWidget.current_widget().file.path path = os.path.dirname(path) if path else '' filename, filter = QtWidgets.QFileDialog.getSaveFileName( self, 'Save', path) if filename: ...
[ "Save", "the", "current", "editor", "document", "as", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L181-L195
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821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.setup_mnu_style
setup the style menu for an editor tab
examples/pynotepad/pynotepad/main_window.py
def setup_mnu_style(self, editor): """ setup the style menu for an editor tab """ menu = QtWidgets.QMenu('Styles', self.menuEdit) group = QtWidgets.QActionGroup(self) self.styles_group = group current_style = editor.syntax_highlighter.color_scheme.name group.triggered.con...
def setup_mnu_style(self, editor): """ setup the style menu for an editor tab """ menu = QtWidgets.QMenu('Styles', self.menuEdit) group = QtWidgets.QActionGroup(self) self.styles_group = group current_style = editor.syntax_highlighter.color_scheme.name group.triggered.con...
[ "setup", "the", "style", "menu", "for", "an", "editor", "tab" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L208-L223
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821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.setup_mnu_panels
Setup the panels menu for the current editor. :param editor:
examples/pynotepad/pynotepad/main_window.py
def setup_mnu_panels(self, editor): """ Setup the panels menu for the current editor. :param editor: """ for panel in editor.panels: if panel.dynamic: continue a = QtWidgets.QAction(self.menuModes) a.setText(panel.name) ...
def setup_mnu_panels(self, editor): """ Setup the panels menu for the current editor. :param editor: """ for panel in editor.panels: if panel.dynamic: continue a = QtWidgets.QAction(self.menuModes) a.setText(panel.name) ...
[ "Setup", "the", "panels", "menu", "for", "the", "current", "editor", ".", ":", "param", "editor", ":" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L235-L249
[ "def", "setup_mnu_panels", "(", "self", ",", "editor", ")", ":", "for", "panel", "in", "editor", ".", "panels", ":", "if", "panel", ".", "dynamic", ":", "continue", "a", "=", "QtWidgets", ".", "QAction", "(", "self", ".", "menuModes", ")", "a", ".", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.on_current_tab_changed
Update action states when the current tab changed.
examples/pynotepad/pynotepad/main_window.py
def on_current_tab_changed(self): """ Update action states when the current tab changed. """ self.menuEdit.clear() self.menuModes.clear() self.menuPanels.clear() editor = self.tabWidget.current_widget() self.menuEdit.setEnabled(editor is not None) ...
def on_current_tab_changed(self): """ Update action states when the current tab changed. """ self.menuEdit.clear() self.menuModes.clear() self.menuPanels.clear() editor = self.tabWidget.current_widget() self.menuEdit.setEnabled(editor is not None) ...
[ "Update", "action", "states", "when", "the", "current", "tab", "changed", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L254-L274
[ "def", "on_current_tab_changed", "(", "self", ")", ":", "self", ".", "menuEdit", ".", "clear", "(", ")", "self", ".", "menuModes", ".", "clear", "(", ")", "self", ".", "menuPanels", ".", "clear", "(", ")", "editor", "=", "self", ".", "tabWidget", ".", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.on_run
Run the current current script
examples/pynotepad/pynotepad/main_window.py
def on_run(self): """ Run the current current script """ filename = self.tabWidget.current_widget().file.path wd = os.path.dirname(filename) args = Settings().get_run_config_for_file(filename) self.interactiveConsole.start_process( Settings().interpret...
def on_run(self): """ Run the current current script """ filename = self.tabWidget.current_widget().file.path wd = os.path.dirname(filename) args = Settings().get_run_config_for_file(filename) self.interactiveConsole.start_process( Settings().interpret...
[ "Run", "the", "current", "current", "script" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L326-L337
[ "def", "on_run", "(", "self", ")", ":", "filename", "=", "self", ".", "tabWidget", ".", "current_widget", "(", ")", ".", "file", ".", "path", "wd", "=", "os", ".", "path", ".", "dirname", "(", "filename", ")", "args", "=", "Settings", "(", ")", "."...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
MainWindow.on_goto_out_of_doc
Open the a new tab when goto goes out of the current document. :param assignment: Destination
examples/pynotepad/pynotepad/main_window.py
def on_goto_out_of_doc(self, assignment): """ Open the a new tab when goto goes out of the current document. :param assignment: Destination """ editor = self.open_file(assignment.module_path) if editor: TextHelper(editor).goto_line(assignment.line, assignment...
def on_goto_out_of_doc(self, assignment): """ Open the a new tab when goto goes out of the current document. :param assignment: Destination """ editor = self.open_file(assignment.module_path) if editor: TextHelper(editor).goto_line(assignment.line, assignment...
[ "Open", "the", "a", "new", "tab", "when", "goto", "goes", "out", "of", "the", "current", "document", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/examples/pynotepad/pynotepad/main_window.py#L339-L347
[ "def", "on_goto_out_of_doc", "(", "self", ",", "assignment", ")", ":", "editor", "=", "self", ".", "open_file", "(", "assignment", ".", "module_path", ")", "if", "editor", ":", "TextHelper", "(", "editor", ")", ".", "goto_line", "(", "assignment", ".", "li...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
calltips
Worker that returns a list of calltips. A calltips is a tuple made of the following parts: - module_name: name of the module of the function invoked - call_name: name of the function that is being called - params: the list of parameter names. - index: index of the current parameter - ...
pyqode/python/backend/workers.py
def calltips(request_data): """ Worker that returns a list of calltips. A calltips is a tuple made of the following parts: - module_name: name of the module of the function invoked - call_name: name of the function that is being called - params: the list of parameter names. - index:...
def calltips(request_data): """ Worker that returns a list of calltips. A calltips is a tuple made of the following parts: - module_name: name of the module of the function invoked - call_name: name of the function that is being called - params: the list of parameter names. - index:...
[ "Worker", "that", "returns", "a", "list", "of", "calltips", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L21-L50
[ "def", "calltips", "(", "request_data", ")", ":", "code", "=", "request_data", "[", "'code'", "]", "line", "=", "request_data", "[", "'line'", "]", "+", "1", "column", "=", "request_data", "[", "'column'", "]", "path", "=", "request_data", "[", "'path'", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
goto_assignments
Go to assignements worker.
pyqode/python/backend/workers.py
def goto_assignments(request_data): """ Go to assignements worker. """ code = request_data['code'] line = request_data['line'] + 1 column = request_data['column'] path = request_data['path'] # encoding = request_data['encoding'] encoding = 'utf-8' script = jedi.Script(code, line,...
def goto_assignments(request_data): """ Go to assignements worker. """ code = request_data['code'] line = request_data['line'] + 1 column = request_data['column'] path = request_data['path'] # encoding = request_data['encoding'] encoding = 'utf-8' script = jedi.Script(code, line,...
[ "Go", "to", "assignements", "worker", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L53-L72
[ "def", "goto_assignments", "(", "request_data", ")", ":", "code", "=", "request_data", "[", "'code'", "]", "line", "=", "request_data", "[", "'line'", "]", "+", "1", "column", "=", "request_data", "[", "'column'", "]", "path", "=", "request_data", "[", "'p...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
defined_names
Returns the list of defined names for the document.
pyqode/python/backend/workers.py
def defined_names(request_data): """ Returns the list of defined names for the document. """ global _old_definitions ret_val = [] path = request_data['path'] toplvl_definitions = jedi.names( request_data['code'], path, 'utf-8') for d in toplvl_definitions: definition = _e...
def defined_names(request_data): """ Returns the list of defined names for the document. """ global _old_definitions ret_val = [] path = request_data['path'] toplvl_definitions = jedi.names( request_data['code'], path, 'utf-8') for d in toplvl_definitions: definition = _e...
[ "Returns", "the", "list", "of", "defined", "names", "for", "the", "document", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L105-L119
[ "def", "defined_names", "(", "request_data", ")", ":", "global", "_old_definitions", "ret_val", "=", "[", "]", "path", "=", "request_data", "[", "'path'", "]", "toplvl_definitions", "=", "jedi", ".", "names", "(", "request_data", "[", "'code'", "]", ",", "pa...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
quick_doc
Worker that returns the documentation of the symbol under cursor.
pyqode/python/backend/workers.py
def quick_doc(request_data): """ Worker that returns the documentation of the symbol under cursor. """ code = request_data['code'] line = request_data['line'] + 1 column = request_data['column'] path = request_data['path'] # encoding = 'utf-8' encoding = 'utf-8' script = jedi.Scr...
def quick_doc(request_data): """ Worker that returns the documentation of the symbol under cursor. """ code = request_data['code'] line = request_data['line'] + 1 column = request_data['column'] path = request_data['path'] # encoding = 'utf-8' encoding = 'utf-8' script = jedi.Scr...
[ "Worker", "that", "returns", "the", "documentation", "of", "the", "symbol", "under", "cursor", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L122-L139
[ "def", "quick_doc", "(", "request_data", ")", ":", "code", "=", "request_data", "[", "'code'", "]", "line", "=", "request_data", "[", "'line'", "]", "+", "1", "column", "=", "request_data", "[", "'column'", "]", "path", "=", "request_data", "[", "'path'", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
run_pep8
Worker that run the pep8 tool on the current editor text. :returns a list of tuples (msg, msg_type, line_number)
pyqode/python/backend/workers.py
def run_pep8(request_data): """ Worker that run the pep8 tool on the current editor text. :returns a list of tuples (msg, msg_type, line_number) """ import pycodestyle from pyqode.python.backend.pep8utils import CustomChecker WARNING = 1 code = request_data['code'] path = request_da...
def run_pep8(request_data): """ Worker that run the pep8 tool on the current editor text. :returns a list of tuples (msg, msg_type, line_number) """ import pycodestyle from pyqode.python.backend.pep8utils import CustomChecker WARNING = 1 code = request_data['code'] path = request_da...
[ "Worker", "that", "run", "the", "pep8", "tool", "on", "the", "current", "editor", "text", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L142-L174
[ "def", "run_pep8", "(", "request_data", ")", ":", "import", "pycodestyle", "from", "pyqode", ".", "python", ".", "backend", ".", "pep8utils", "import", "CustomChecker", "WARNING", "=", "1", "code", "=", "request_data", "[", "'code'", "]", "path", "=", "reque...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
run_pyflakes
Worker that run a frosted (the fork of pyflakes) code analysis on the current editor text.
pyqode/python/backend/workers.py
def run_pyflakes(request_data): """ Worker that run a frosted (the fork of pyflakes) code analysis on the current editor text. """ global prev_results from pyflakes import checker import _ast WARNING = 1 ERROR = 2 ret_val = [] code = request_data['code'] path = request_da...
def run_pyflakes(request_data): """ Worker that run a frosted (the fork of pyflakes) code analysis on the current editor text. """ global prev_results from pyflakes import checker import _ast WARNING = 1 ERROR = 2 ret_val = [] code = request_data['code'] path = request_da...
[ "Worker", "that", "run", "a", "frosted", "(", "the", "fork", "of", "pyflakes", ")", "code", "analysis", "on", "the", "current", "editor", "text", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L186-L235
[ "def", "run_pyflakes", "(", "request_data", ")", ":", "global", "prev_results", "from", "pyflakes", "import", "checker", "import", "_ast", "WARNING", "=", "1", "ERROR", "=", "2", "ret_val", "=", "[", "]", "code", "=", "request_data", "[", "'code'", "]", "p...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
icon_from_typename
Returns the icon resource filename that corresponds to the given typename. :param name: name of the completion. Use to make the distinction between public and private completions (using the count of starting '_') :pram typename: the typename reported by jedi :returns: The associate icon resource f...
pyqode/python/backend/workers.py
def icon_from_typename(name, icon_type): """ Returns the icon resource filename that corresponds to the given typename. :param name: name of the completion. Use to make the distinction between public and private completions (using the count of starting '_') :pram typename: the typename reported...
def icon_from_typename(name, icon_type): """ Returns the icon resource filename that corresponds to the given typename. :param name: name of the completion. Use to make the distinction between public and private completions (using the count of starting '_') :pram typename: the typename reported...
[ "Returns", "the", "icon", "resource", "filename", "that", "corresponds", "to", "the", "given", "typename", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L248-L296
[ "def", "icon_from_typename", "(", "name", ",", "icon_type", ")", ":", "ICONS", "=", "{", "'CLASS'", ":", "ICON_CLASS", ",", "'IMPORT'", ":", "ICON_NAMESPACE", ",", "'STATEMENT'", ":", "ICON_VAR", ",", "'FORFLOW'", ":", "ICON_VAR", ",", "'FORSTMT'", ":", "ICO...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
JediCompletionProvider.complete
Completes python code using `jedi`_. :returns: a list of completion.
pyqode/python/backend/workers.py
def complete(code, line, column, path, encoding, prefix): """ Completes python code using `jedi`_. :returns: a list of completion. """ ret_val = [] try: script = jedi.Script(code, line + 1, column, path, encoding) completions = script.completions(...
def complete(code, line, column, path, encoding, prefix): """ Completes python code using `jedi`_. :returns: a list of completion. """ ret_val = [] try: script = jedi.Script(code, line + 1, column, path, encoding) completions = script.completions(...
[ "Completes", "python", "code", "using", "jedi", "_", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/backend/workers.py#L307-L326
[ "def", "complete", "(", "code", ",", "line", ",", "column", ",", "path", ",", "encoding", ",", "prefix", ")", ":", "ret_val", "=", "[", "]", "try", ":", "script", "=", "jedi", ".", "Script", "(", "code", ",", "line", "+", "1", ",", "column", ",",...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
make_python_patterns
Strongly inspired from idlelib.ColorDelegator.make_pat
pyqode/python/modes/sh.py
def make_python_patterns(additional_keywords=[], additional_builtins=[]): """Strongly inspired from idlelib.ColorDelegator.make_pat""" kw = r"\b" + any("keyword", kwlist + additional_keywords) + r"\b" kw_namespace = r"\b" + any("namespace", kw_namespace_list) + r"\b" word_operators = r"\b" + any("operat...
def make_python_patterns(additional_keywords=[], additional_builtins=[]): """Strongly inspired from idlelib.ColorDelegator.make_pat""" kw = r"\b" + any("keyword", kwlist + additional_keywords) + r"\b" kw_namespace = r"\b" + any("namespace", kw_namespace_list) + r"\b" word_operators = r"\b" + any("operat...
[ "Strongly", "inspired", "from", "idlelib", ".", "ColorDelegator", ".", "make_pat" ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/sh.py#L61-L97
[ "def", "make_python_patterns", "(", "additional_keywords", "=", "[", "]", ",", "additional_builtins", "=", "[", "]", ")", ":", "kw", "=", "r\"\\b\"", "+", "any", "(", "\"keyword\"", ",", "kwlist", "+", "additional_keywords", ")", "+", "r\"\\b\"", "kw_namespace...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
GoToAssignmentsMode._check_word_cursor
Request a go to assignment. :param tc: Text cursor which contains the text that we must look for its assignment. Can be None to go to the text that is under the text cursor. :type tc: QtGui.QTextCursor
pyqode/python/modes/goto_assignements.py
def _check_word_cursor(self, tc=None): """ Request a go to assignment. :param tc: Text cursor which contains the text that we must look for its assignment. Can be None to go to the text that is under the text cursor. :type tc: QtGui.QTextCursor ...
def _check_word_cursor(self, tc=None): """ Request a go to assignment. :param tc: Text cursor which contains the text that we must look for its assignment. Can be None to go to the text that is under the text cursor. :type tc: QtGui.QTextCursor ...
[ "Request", "a", "go", "to", "assignment", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/goto_assignements.py#L92-L116
[ "def", "_check_word_cursor", "(", "self", ",", "tc", "=", "None", ")", ":", "if", "not", "tc", ":", "tc", "=", "TextHelper", "(", "self", ".", "editor", ")", ".", "word_under_cursor", "(", ")", "request_data", "=", "{", "'code'", ":", "self", ".", "e...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
GoToAssignmentsMode._unique
Not performant but works.
pyqode/python/modes/goto_assignements.py
def _unique(self, seq): """ Not performant but works. """ # order preserving checked = [] for e in seq: present = False for c in checked: if str(c) == str(e): present = True break ...
def _unique(self, seq): """ Not performant but works. """ # order preserving checked = [] for e in seq: present = False for c in checked: if str(c) == str(e): present = True break ...
[ "Not", "performant", "but", "works", "." ]
pyQode/pyqode.python
python
https://github.com/pyQode/pyqode.python/blob/821e000ea2e2638a82ce095a559e69afd9bd4f38/pyqode/python/modes/goto_assignements.py#L133-L147
[ "def", "_unique", "(", "self", ",", "seq", ")", ":", "# order preserving", "checked", "=", "[", "]", "for", "e", "in", "seq", ":", "present", "=", "False", "for", "c", "in", "checked", ":", "if", "str", "(", "c", ")", "==", "str", "(", "e", ")", ...
821e000ea2e2638a82ce095a559e69afd9bd4f38
valid
read_bgen
r""" Read a given BGEN file. Parameters ---------- filepath : str A bgen file path. metafile_filepath : str, optional If ``None``, it will try to read the ``filepath + ".metadata"`` file. If this is not possible, it will create one. It tries to create one at ``filepath +...
bgen_reader/_reader.py
def read_bgen(filepath, metafile_filepath=None, samples_filepath=None, verbose=True): r""" Read a given BGEN file. Parameters ---------- filepath : str A bgen file path. metafile_filepath : str, optional If ``None``, it will try to read the ``filepath + ".metadata"`` file. If this i...
def read_bgen(filepath, metafile_filepath=None, samples_filepath=None, verbose=True): r""" Read a given BGEN file. Parameters ---------- filepath : str A bgen file path. metafile_filepath : str, optional If ``None``, it will try to read the ``filepath + ".metadata"`` file. If this i...
[ "r", "Read", "a", "given", "BGEN", "file", "." ]
limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/bgen_reader/_reader.py#L16-L87
[ "def", "read_bgen", "(", "filepath", ",", "metafile_filepath", "=", "None", ",", "samples_filepath", "=", "None", ",", "verbose", "=", "True", ")", ":", "assert_file_exist", "(", "filepath", ")", "assert_file_readable", "(", "filepath", ")", "metafile_filepath", ...
3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
CheckFileParser._validateDirectives
We should enforce for every CHECK-NOT and CHECK-NOT-L directive that the next directive (if it exists) is a CHECK or CHECK-L directive
OutputCheck/CheckFileParser.py
def _validateDirectives(self, directiveList, checkFileName): if len(directiveList) == 0: raise ParsingException("'{file}' does not contain any CHECK directives".format(file=checkFileName)) from . import Directives """ We should enforce for every CHECK-NOT and CHECK-NOT-...
def _validateDirectives(self, directiveList, checkFileName): if len(directiveList) == 0: raise ParsingException("'{file}' does not contain any CHECK directives".format(file=checkFileName)) from . import Directives """ We should enforce for every CHECK-NOT and CHECK-NOT-...
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stp/OutputCheck
python
https://github.com/stp/OutputCheck/blob/eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d/OutputCheck/CheckFileParser.py#L109-L132
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eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d
valid
CheckFileParser._substituteCheckPattern
Do various ${} substitutions
OutputCheck/CheckFileParser.py
def _substituteCheckPattern(self, inputString, lineNumber, lastLineNumber, checkFileName, isForRegex): """ Do various ${} substitutions """ assert isinstance(inputString, str) assert isinstance(lineNumber, int) assert isinstance(lastLineNumber, int) assert isinsta...
def _substituteCheckPattern(self, inputString, lineNumber, lastLineNumber, checkFileName, isForRegex): """ Do various ${} substitutions """ assert isinstance(inputString, str) assert isinstance(lineNumber, int) assert isinstance(lastLineNumber, int) assert isinsta...
[ "Do", "various", "$", "{}", "substitutions" ]
stp/OutputCheck
python
https://github.com/stp/OutputCheck/blob/eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d/OutputCheck/CheckFileParser.py#L134-L220
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eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d
valid
create_metafile
r"""Create variants metadata file. Variants metadata file helps speed up subsequent reads of the associated bgen file. Parameters ---------- bgen_filepath : str Bgen file path. metafile_file : str Metafile file path. verbose : bool ``True`` to show progress; ``False...
bgen_reader/_metadata.py
def create_metafile(bgen_filepath, metafile_filepath, verbose=True): r"""Create variants metadata file. Variants metadata file helps speed up subsequent reads of the associated bgen file. Parameters ---------- bgen_filepath : str Bgen file path. metafile_file : str Metafile...
def create_metafile(bgen_filepath, metafile_filepath, verbose=True): r"""Create variants metadata file. Variants metadata file helps speed up subsequent reads of the associated bgen file. Parameters ---------- bgen_filepath : str Bgen file path. metafile_file : str Metafile...
[ "r", "Create", "variants", "metadata", "file", "." ]
limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/bgen_reader/_metadata.py#L10-L63
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3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
CheckLiteral.match
Search through lines for match. Raise an Exception if fail to match If match is succesful return the position the match was found
OutputCheck/Directives.py
def match(self, subsetLines, offsetOfSubset, fileName): """ Search through lines for match. Raise an Exception if fail to match If match is succesful return the position the match was found """ for (offset,l) in enumerate(subsetLines): column = l....
def match(self, subsetLines, offsetOfSubset, fileName): """ Search through lines for match. Raise an Exception if fail to match If match is succesful return the position the match was found """ for (offset,l) in enumerate(subsetLines): column = l....
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stp/OutputCheck
python
https://github.com/stp/OutputCheck/blob/eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d/OutputCheck/Directives.py#L108-L126
[ "def", "match", "(", "self", ",", "subsetLines", ",", "offsetOfSubset", ",", "fileName", ")", ":", "for", "(", "offset", ",", "l", ")", "in", "enumerate", "(", "subsetLines", ")", ":", "column", "=", "l", ".", "find", "(", "self", ".", "literal", ")"...
eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d
valid
CheckNot.match
Search through lines for match. Raise an Exception if a match
OutputCheck/Directives.py
def match(self, subsetLines, offsetOfSubset, fileName): """ Search through lines for match. Raise an Exception if a match """ for (offset,l) in enumerate(subsetLines): for t in self.regex: m = t.Regex.search(l) if m != None: ...
def match(self, subsetLines, offsetOfSubset, fileName): """ Search through lines for match. Raise an Exception if a match """ for (offset,l) in enumerate(subsetLines): for t in self.regex: m = t.Regex.search(l) if m != None: ...
[ "Search", "through", "lines", "for", "match", ".", "Raise", "an", "Exception", "if", "a", "match" ]
stp/OutputCheck
python
https://github.com/stp/OutputCheck/blob/eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d/OutputCheck/Directives.py#L195-L209
[ "def", "match", "(", "self", ",", "subsetLines", ",", "offsetOfSubset", ",", "fileName", ")", ":", "for", "(", "offset", ",", "l", ")", "in", "enumerate", "(", "subsetLines", ")", ":", "for", "t", "in", "self", ".", "regex", ":", "m", "=", "t", "."...
eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d
valid
isA
Return true if ``instance`` is an instance of any the Directive types in ``typeList``
OutputCheck/Utils.py
def isA(instance, typeList): """ Return true if ``instance`` is an instance of any the Directive types in ``typeList`` """ return any(map(lambda iType: isinstance(instance,iType), typeList))
def isA(instance, typeList): """ Return true if ``instance`` is an instance of any the Directive types in ``typeList`` """ return any(map(lambda iType: isinstance(instance,iType), typeList))
[ "Return", "true", "if", "instance", "is", "an", "instance", "of", "any", "the", "Directive", "types", "in", "typeList" ]
stp/OutputCheck
python
https://github.com/stp/OutputCheck/blob/eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d/OutputCheck/Utils.py#L1-L6
[ "def", "isA", "(", "instance", ",", "typeList", ")", ":", "return", "any", "(", "map", "(", "lambda", "iType", ":", "isinstance", "(", "instance", ",", "iType", ")", ",", "typeList", ")", ")" ]
eab62a5dd5129f6a4ebfbe4bbe41d35611f7c48d
valid
_touch
Touch a file. Credits to <https://stackoverflow.com/a/1160227>.
bgen_reader/_file.py
def _touch(fname, mode=0o666, dir_fd=None, **kwargs): """ Touch a file. Credits to <https://stackoverflow.com/a/1160227>. """ flags = os.O_CREAT | os.O_APPEND with os.fdopen(os.open(fname, flags=flags, mode=mode, dir_fd=dir_fd)) as f: os.utime( f.fileno() if os.utime in os.suppo...
def _touch(fname, mode=0o666, dir_fd=None, **kwargs): """ Touch a file. Credits to <https://stackoverflow.com/a/1160227>. """ flags = os.O_CREAT | os.O_APPEND with os.fdopen(os.open(fname, flags=flags, mode=mode, dir_fd=dir_fd)) as f: os.utime( f.fileno() if os.utime in os.suppo...
[ "Touch", "a", "file", "." ]
limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/bgen_reader/_file.py#L36-L47
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3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
allele_frequency
r""" Compute allele frequency from its expectation. Parameters ---------- expec : array_like Allele expectations encoded as a samples-by-alleles matrix. Returns ------- :class:`numpy.ndarray` Allele frequencies encoded as a variants-by-alleles matrix. Examples --------...
bgen_reader/_dosage.py
def allele_frequency(expec): r""" Compute allele frequency from its expectation. Parameters ---------- expec : array_like Allele expectations encoded as a samples-by-alleles matrix. Returns ------- :class:`numpy.ndarray` Allele frequencies encoded as a variants-by-alleles m...
def allele_frequency(expec): r""" Compute allele frequency from its expectation. Parameters ---------- expec : array_like Allele expectations encoded as a samples-by-alleles matrix. Returns ------- :class:`numpy.ndarray` Allele frequencies encoded as a variants-by-alleles m...
[ "r", "Compute", "allele", "frequency", "from", "its", "expectation", "." ]
limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/bgen_reader/_dosage.py#L6-L60
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3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
compute_dosage
r""" Compute dosage from allele expectation. Parameters ---------- expec : array_like Allele expectations encoded as a samples-by-alleles matrix. alt : array_like, optional Alternative allele index. If ``None``, the allele having the minor allele frequency for the provided ``exp...
bgen_reader/_dosage.py
def compute_dosage(expec, alt=None): r""" Compute dosage from allele expectation. Parameters ---------- expec : array_like Allele expectations encoded as a samples-by-alleles matrix. alt : array_like, optional Alternative allele index. If ``None``, the allele having the minor ...
def compute_dosage(expec, alt=None): r""" Compute dosage from allele expectation. Parameters ---------- expec : array_like Allele expectations encoded as a samples-by-alleles matrix. alt : array_like, optional Alternative allele index. If ``None``, the allele having the minor ...
[ "r", "Compute", "dosage", "from", "allele", "expectation", "." ]
limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/bgen_reader/_dosage.py#L63-L242
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3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
allele_expectation
r""" Allele expectation. Compute the expectation of each allele from the genotype probabilities. Parameters ---------- bgen : bgen_file Bgen file handler. variant_idx : int Variant index. Returns ------- :class:`numpy.ndarray` Samples-by-alleles matrix of allel...
bgen_reader/_dosage.py
def allele_expectation(bgen, variant_idx): r""" Allele expectation. Compute the expectation of each allele from the genotype probabilities. Parameters ---------- bgen : bgen_file Bgen file handler. variant_idx : int Variant index. Returns ------- :class:`numpy.ndar...
def allele_expectation(bgen, variant_idx): r""" Allele expectation. Compute the expectation of each allele from the genotype probabilities. Parameters ---------- bgen : bgen_file Bgen file handler. variant_idx : int Variant index. Returns ------- :class:`numpy.ndar...
[ "r", "Allele", "expectation", "." ]
limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/bgen_reader/_dosage.py#L245-L350
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3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
Windows.find_libname
Try to infer the correct library name.
libpath.py
def find_libname(self, name): """Try to infer the correct library name.""" names = ["{}.lib", "lib{}.lib", "{}lib.lib"] names = [n.format(name) for n in names] dirs = self.get_library_dirs() for d in dirs: for n in names: if exists(join(d, n)): ...
def find_libname(self, name): """Try to infer the correct library name.""" names = ["{}.lib", "lib{}.lib", "{}lib.lib"] names = [n.format(name) for n in names] dirs = self.get_library_dirs() for d in dirs: for n in names: if exists(join(d, n)): ...
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limix/bgen-reader-py
python
https://github.com/limix/bgen-reader-py/blob/3f66a39e15a71b981e8c5f887a4adc3ad486a45f/libpath.py#L109-L119
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3f66a39e15a71b981e8c5f887a4adc3ad486a45f
valid
LeaveOneGroupOut.split
Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target variable for supervised learning problems. gro...
CIMtools/model_selection/group_out.py
def split(self, X, y=None, groups=None): """Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target va...
def split(self, X, y=None, groups=None): """Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target va...
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stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/model_selection/group_out.py#L54-L92
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
molconvert_chemaxon
molconvert wrapper :param data: buffer or string or path to file :return: array of molecules of reactions
CIMtools/datasets/molconvert_chemaxon.py
def molconvert_chemaxon(data): """ molconvert wrapper :param data: buffer or string or path to file :return: array of molecules of reactions """ if isinstance(data, Path): with data.open('rb') as f: data = f.read() elif isinstance(data, StringIO): data = data.read...
def molconvert_chemaxon(data): """ molconvert wrapper :param data: buffer or string or path to file :return: array of molecules of reactions """ if isinstance(data, Path): with data.open('rb') as f: data = f.read() elif isinstance(data, StringIO): data = data.read...
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stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/datasets/molconvert_chemaxon.py#L27-L58
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
SimilarityDistance.fit
Fit distance-based AD. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Use ``dtype=np.float32`` for maximum efficiency. Returns ------- self : object Returns self.
CIMtools/applicability_domain/similarity_distance.py
def fit(self, X, y=None): """Fit distance-based AD. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Use ``dtype=np.float32`` for maximum efficiency. Returns ------- self : object ...
def fit(self, X, y=None): """Fit distance-based AD. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Use ``dtype=np.float32`` for maximum efficiency. Returns ------- self : object ...
[ "Fit", "distance", "-", "based", "AD", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/similarity_distance.py#L105-L158
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
SimilarityDistance.predict_proba
Returns the value of the nearest neighbor from the training set. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided ...
CIMtools/applicability_domain/similarity_distance.py
def predict_proba(self, X): """Returns the value of the nearest neighbor from the training set. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and i...
def predict_proba(self, X): """Returns the value of the nearest neighbor from the training set. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and i...
[ "Returns", "the", "value", "of", "the", "nearest", "neighbor", "from", "the", "training", "set", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/similarity_distance.py#L160-L178
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
SimilarityDistance.predict
Predict if a particular sample is an outlier or not. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided to a spar...
CIMtools/applicability_domain/similarity_distance.py
def predict(self, X): """Predict if a particular sample is an outlier or not. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix ...
def predict(self, X): """Predict if a particular sample is an outlier or not. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix ...
[ "Predict", "if", "a", "particular", "sample", "is", "an", "outlier", "or", "not", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/similarity_distance.py#L180-L200
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Leverage.fit
Learning is to find the inverse matrix for X and calculate the threshold. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Use ``dtype=np.float32`` for maximum efficiency. y : array-like, shape = [n_samples] ...
CIMtools/applicability_domain/leverage.py
def fit(self, X, y=None): """Learning is to find the inverse matrix for X and calculate the threshold. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Use ``dtype=np.float32`` for maximum efficiency. ...
def fit(self, X, y=None): """Learning is to find the inverse matrix for X and calculate the threshold. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Use ``dtype=np.float32`` for maximum efficiency. ...
[ "Learning", "is", "to", "find", "the", "inverse", "matrix", "for", "X", "and", "calculate", "the", "threshold", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/leverage.py#L75-L128
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Leverage.predict_proba
Predict the distances for X to center of the training set. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided to a...
CIMtools/applicability_domain/leverage.py
def predict_proba(self, X): """Predict the distances for X to center of the training set. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a spa...
def predict_proba(self, X): """Predict the distances for X to center of the training set. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a spa...
[ "Predict", "the", "distances", "for", "X", "to", "center", "of", "the", "training", "set", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/leverage.py#L130-L149
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Leverage.predict
Predict inside or outside AD for X. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided to a sparse ``csr_matrix``....
CIMtools/applicability_domain/leverage.py
def predict(self, X): """Predict inside or outside AD for X. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided ...
def predict(self, X): """Predict inside or outside AD for X. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided ...
[ "Predict", "inside", "or", "outside", "AD", "for", "X", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/leverage.py#L151-L170
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
ConditionsToDataFrame.get_feature_names
Get feature names. Returns ------- feature_names : list of strings Names of the features produced by transform.
CIMtools/conditions_container.py
def get_feature_names(self): """Get feature names. Returns ------- feature_names : list of strings Names of the features produced by transform. """ return ['temperature', 'pressure'] + [f'solvent.{x}' for x in range(1, self.max_solvents + 1)] + \ ...
def get_feature_names(self): """Get feature names. Returns ------- feature_names : list of strings Names of the features produced by transform. """ return ['temperature', 'pressure'] + [f'solvent.{x}' for x in range(1, self.max_solvents + 1)] + \ ...
[ "Get", "feature", "names", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/conditions_container.py#L148-L157
[ "def", "get_feature_names", "(", "self", ")", ":", "return", "[", "'temperature'", ",", "'pressure'", "]", "+", "[", "f'solvent.{x}'", "for", "x", "in", "range", "(", "1", ",", "self", ".", "max_solvents", "+", "1", ")", "]", "+", "[", "f'solvent_amount....
cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Box.fit
Find min and max values of every feature. Parameters ---------- X : {array-like, sparse matrix}, shape (n_samples, n_features) The training input samples. y : Ignored not used, present for API consistency by convention. Returns ------- se...
CIMtools/applicability_domain/bounding_box.py
def fit(self, X, y=None): """Find min and max values of every feature. Parameters ---------- X : {array-like, sparse matrix}, shape (n_samples, n_features) The training input samples. y : Ignored not used, present for API consistency by convention. ...
def fit(self, X, y=None): """Find min and max values of every feature. Parameters ---------- X : {array-like, sparse matrix}, shape (n_samples, n_features) The training input samples. y : Ignored not used, present for API consistency by convention. ...
[ "Find", "min", "and", "max", "values", "of", "every", "feature", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/bounding_box.py#L37-L56
[ "def", "fit", "(", "self", ",", "X", ",", "y", "=", "None", ")", ":", "# Check that X have correct shape", "X", "=", "check_array", "(", "X", ")", "self", ".", "_x_min", "=", "X", ".", "min", "(", "axis", "=", "0", ")", "# axis=0 will find the minimum va...
cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Box.predict
Predict if a particular sample is an outlier or not. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix is provided to a spars...
CIMtools/applicability_domain/bounding_box.py
def predict(self, X): """ Predict if a particular sample is an outlier or not. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix ...
def predict(self, X): """ Predict if a particular sample is an outlier or not. Parameters ---------- X : array-like or sparse matrix, shape (n_samples, n_features) The input samples. Internally, it will be converted to ``dtype=np.float32`` and if a sparse matrix ...
[ "Predict", "if", "a", "particular", "sample", "is", "an", "outlier", "or", "not", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/bounding_box.py#L58-L79
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
TransformationOut.split
Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target variable for supervised learning problems. gro...
CIMtools/model_selection/transformation_out.py
def split(self, X, y=None, groups=None): """Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target va...
def split(self, X, y=None, groups=None): """Generate indices to split data into training and test set. Parameters ---------- X : array-like, of length n_samples Training data, includes reaction's containers y : array-like, of length n_samples The target va...
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stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/model_selection/transformation_out.py#L81-L156
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
CIMtoolsTransformerMixin.fit
Do nothing and return the estimator unchanged This method is just there to implement the usual API and hence work in pipelines.
CIMtools/base.py
def fit(self, x, y=None): """Do nothing and return the estimator unchanged This method is just there to implement the usual API and hence work in pipelines. """ if self._dtype is not None: iter2array(x, dtype=self._dtype) else: iter2array(x) retur...
def fit(self, x, y=None): """Do nothing and return the estimator unchanged This method is just there to implement the usual API and hence work in pipelines. """ if self._dtype is not None: iter2array(x, dtype=self._dtype) else: iter2array(x) retur...
[ "Do", "nothing", "and", "return", "the", "estimator", "unchanged" ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/base.py#L26-L35
[ "def", "fit", "(", "self", ",", "x", ",", "y", "=", "None", ")", ":", "if", "self", ".", "_dtype", "is", "not", "None", ":", "iter2array", "(", "x", ",", "dtype", "=", "self", ".", "_dtype", ")", "else", ":", "iter2array", "(", "x", ")", "retur...
cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Fragmentor.finalize
finalize partial fitting procedure
CIMtools/preprocessing/fragmentor.py
def finalize(self): """ finalize partial fitting procedure """ if self.__head_less: warn(f'{self.__class__.__name__} configured to head less mode. finalize unusable') elif not self.__head_generate: warn(f'{self.__class__.__name__} already finalized or fitt...
def finalize(self): """ finalize partial fitting procedure """ if self.__head_less: warn(f'{self.__class__.__name__} configured to head less mode. finalize unusable') elif not self.__head_generate: warn(f'{self.__class__.__name__} already finalized or fitt...
[ "finalize", "partial", "fitting", "procedure" ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/preprocessing/fragmentor.py#L116-L131
[ "def", "finalize", "(", "self", ")", ":", "if", "self", ".", "__head_less", ":", "warn", "(", "f'{self.__class__.__name__} configured to head less mode. finalize unusable'", ")", "elif", "not", "self", ".", "__head_generate", ":", "warn", "(", "f'{self.__class__.__name_...
cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Fragmentor._reset
Reset internal data-dependent state. __init__ parameters are not touched.
CIMtools/preprocessing/fragmentor.py
def _reset(self): """Reset internal data-dependent state. __init__ parameters are not touched. """ if not self.__head_less: if not self.__head_generate: self.__head_generate = True if self.__head_dict: self.__head_dump = self.__head...
def _reset(self): """Reset internal data-dependent state. __init__ parameters are not touched. """ if not self.__head_less: if not self.__head_generate: self.__head_generate = True if self.__head_dict: self.__head_dump = self.__head...
[ "Reset", "internal", "data", "-", "dependent", "state", ".", "__init__", "parameters", "are", "not", "touched", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/preprocessing/fragmentor.py#L133-L145
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Fragmentor.get_feature_names
Get feature names. Returns ------- feature_names : list of strings Names of the features produced by transform.
CIMtools/preprocessing/fragmentor.py
def get_feature_names(self): """Get feature names. Returns ------- feature_names : list of strings Names of the features produced by transform. """ if self.__head_less: raise AttributeError(f'{self.__class__.__name__} instance configured to head l...
def get_feature_names(self): """Get feature names. Returns ------- feature_names : list of strings Names of the features produced by transform. """ if self.__head_less: raise AttributeError(f'{self.__class__.__name__} instance configured to head l...
[ "Get", "feature", "names", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/preprocessing/fragmentor.py#L147-L159
[ "def", "get_feature_names", "(", "self", ")", ":", "if", "self", ".", "__head_less", ":", "raise", "AttributeError", "(", "f'{self.__class__.__name__} instance configured to head less mode'", ")", "elif", "not", "self", ".", "__head_dict", ":", "raise", "NotFittedError"...
cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Fragmentor.fit
Compute the header.
CIMtools/preprocessing/fragmentor.py
def fit(self, x, y=None): """Compute the header. """ x = iter2array(x, dtype=(MoleculeContainer, CGRContainer)) if self.__head_less: warn(f'{self.__class__.__name__} configured to head less mode. fit unusable') return self self._reset() self.__pr...
def fit(self, x, y=None): """Compute the header. """ x = iter2array(x, dtype=(MoleculeContainer, CGRContainer)) if self.__head_less: warn(f'{self.__class__.__name__} configured to head less mode. fit unusable') return self self._reset() self.__pr...
[ "Compute", "the", "header", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/preprocessing/fragmentor.py#L161-L172
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
ReactionTypeControl.fit
Fit structure-based AD. The training model memorizes the unique set of reaction signature. Parameters ---------- X : after read rdf file Returns ------- self : object
CIMtools/applicability_domain/reaction_type_control.py
def fit(self, X): """Fit structure-based AD. The training model memorizes the unique set of reaction signature. Parameters ---------- X : after read rdf file Returns ------- self : object """ X = iter2array(X, dtype=ReactionContainer) se...
def fit(self, X): """Fit structure-based AD. The training model memorizes the unique set of reaction signature. Parameters ---------- X : after read rdf file Returns ------- self : object """ X = iter2array(X, dtype=ReactionContainer) se...
[ "Fit", "structure", "-", "based", "AD", ".", "The", "training", "model", "memorizes", "the", "unique", "set", "of", "reaction", "signature", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/reaction_type_control.py#L51-L64
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
ReactionTypeControl.predict
Reaction is considered belonging to model’s AD if its reaction signature coincides with ones used in training set. Parameters ---------- X : after read rdf file Returns ------- self : array contains True (reaction in AD) and False (reaction residing outside AD).
CIMtools/applicability_domain/reaction_type_control.py
def predict(self, X): """Reaction is considered belonging to model’s AD if its reaction signature coincides with ones used in training set. Parameters ---------- X : after read rdf file Returns ------- self : array contains True (reaction in AD) and Fals...
def predict(self, X): """Reaction is considered belonging to model’s AD if its reaction signature coincides with ones used in training set. Parameters ---------- X : after read rdf file Returns ------- self : array contains True (reaction in AD) and Fals...
[ "Reaction", "is", "considered", "belonging", "to", "model’s", "AD", "if", "its", "reaction", "signature", "coincides", "with", "ones", "used", "in", "training", "set", "." ]
stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/applicability_domain/reaction_type_control.py#L66-L80
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
Eval.__parser
adopted from Paul McGuire example. http://pyparsing.wikispaces.com/file/view/fourFn.py
CIMtools/preprocessing/equation.py
def __parser(expression): """ adopted from Paul McGuire example. http://pyparsing.wikispaces.com/file/view/fourFn.py """ expr_stack = [] def push_first(strg, loc, toks): expr_stack.append(toks[0]) def push_u_minus(strg, loc, toks): if toks and toks[0] ==...
def __parser(expression): """ adopted from Paul McGuire example. http://pyparsing.wikispaces.com/file/view/fourFn.py """ expr_stack = [] def push_first(strg, loc, toks): expr_stack.append(toks[0]) def push_u_minus(strg, loc, toks): if toks and toks[0] ==...
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stsouko/CIMtools
python
https://github.com/stsouko/CIMtools/blob/cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3/CIMtools/preprocessing/equation.py#L58-L100
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cbb46e68eaa1fe7e7b6cb311fc7063e97096bdf3
valid
from_int
:params data: integer :returns: proquint made from input data :type data: int :rtype: string
morango/utils/proquint.py
def from_int(data): """ :params data: integer :returns: proquint made from input data :type data: int :rtype: string """ if not isinstance(data, int) and not isinstance(data, long): raise TypeError('Input must be integer') res = [] while data > 0 or not res: for j in...
def from_int(data): """ :params data: integer :returns: proquint made from input data :type data: int :rtype: string """ if not isinstance(data, int) and not isinstance(data, long): raise TypeError('Input must be integer') res = [] while data > 0 or not res: for j in...
[ ":", "params", "data", ":", "integer", ":", "returns", ":", "proquint", "made", "from", "input", "data", ":", "type", "data", ":", "int", ":", "rtype", ":", "string" ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/proquint.py#L57-L79
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
to_int
:params data: proquint :returns: proquint decoded into an integer :type data: string :rtype: int
morango/utils/proquint.py
def to_int(data): """ :params data: proquint :returns: proquint decoded into an integer :type data: string :rtype: int """ if not isinstance(data, basestring): raise TypeError('Input must be string') res = 0 for part in data.split('-'): if len(part) != 5: ...
def to_int(data): """ :params data: proquint :returns: proquint decoded into an integer :type data: string :rtype: int """ if not isinstance(data, basestring): raise TypeError('Input must be string') res = 0 for part in data.split('-'): if len(part) != 5: ...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/proquint.py#L82-L106
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
SharedKey.get_or_create_shared_key
Create a shared public/private key pair for certificate pushing, if the settings allow.
morango/crypto.py
def get_or_create_shared_key(cls, force_new=False): """ Create a shared public/private key pair for certificate pushing, if the settings allow. """ if force_new: with transaction.atomic(): SharedKey.objects.filter(current=True).update(current=False) ...
def get_or_create_shared_key(cls, force_new=False): """ Create a shared public/private key pair for certificate pushing, if the settings allow. """ if force_new: with transaction.atomic(): SharedKey.objects.filter(current=True).update(current=False) ...
[ "Create", "a", "shared", "public", "/", "private", "key", "pair", "for", "certificate", "pushing", "if", "the", "settings", "allow", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/crypto.py#L359-L378
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
_self_referential_fk
Return whether this model has a self ref FK, and the name for the field
morango/controller.py
def _self_referential_fk(klass_model): """ Return whether this model has a self ref FK, and the name for the field """ for f in klass_model._meta.concrete_fields: if f.related_model: if issubclass(klass_model, f.related_model): return f.attname return None
def _self_referential_fk(klass_model): """ Return whether this model has a self ref FK, and the name for the field """ for f in klass_model._meta.concrete_fields: if f.related_model: if issubclass(klass_model, f.related_model): return f.attname return None
[ "Return", "whether", "this", "model", "has", "a", "self", "ref", "FK", "and", "the", "name", "for", "the", "field" ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/controller.py#L5-L13
[ "def", "_self_referential_fk", "(", "klass_model", ")", ":", "for", "f", "in", "klass_model", ".", "_meta", ".", "concrete_fields", ":", "if", "f", ".", "related_model", ":", "if", "issubclass", "(", "klass_model", ",", "f", ".", "related_model", ")", ":", ...
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
InstanceIDModel.get_or_create_current_instance
Get the instance model corresponding to the current system, or create a new one if the system is new or its properties have changed (e.g. OS from upgrade).
morango/models.py
def get_or_create_current_instance(cls): """Get the instance model corresponding to the current system, or create a new one if the system is new or its properties have changed (e.g. OS from upgrade).""" # on Android, platform.platform() barfs, so we handle that safely here try: ...
def get_or_create_current_instance(cls): """Get the instance model corresponding to the current system, or create a new one if the system is new or its properties have changed (e.g. OS from upgrade).""" # on Android, platform.platform() barfs, so we handle that safely here try: ...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/models.py#L100-L134
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
Store._deserialize_store_model
When deserializing a store model, we look at the deleted flags to know if we should delete the app model. Upon loading the app model in memory we validate the app models fields, if any errors occurs we follow foreign key relationships to see if the related model has been deleted to propagate that deleti...
morango/models.py
def _deserialize_store_model(self, fk_cache): """ When deserializing a store model, we look at the deleted flags to know if we should delete the app model. Upon loading the app model in memory we validate the app models fields, if any errors occurs we follow foreign key relationships to ...
def _deserialize_store_model(self, fk_cache): """ When deserializing a store model, we look at the deleted flags to know if we should delete the app model. Upon loading the app model in memory we validate the app models fields, if any errors occurs we follow foreign key relationships to ...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/models.py#L288-L335
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
SyncableModel.serialize
All concrete fields of the ``SyncableModel`` subclass, except for those specifically blacklisted, are returned in a dict.
morango/models.py
def serialize(self): """All concrete fields of the ``SyncableModel`` subclass, except for those specifically blacklisted, are returned in a dict.""" # NOTE: code adapted from https://github.com/django/django/blob/master/django/forms/models.py#L75 opts = self._meta data = {} for ...
def serialize(self): """All concrete fields of the ``SyncableModel`` subclass, except for those specifically blacklisted, are returned in a dict.""" # NOTE: code adapted from https://github.com/django/django/blob/master/django/forms/models.py#L75 opts = self._meta data = {} for ...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/models.py#L528-L546
[ "def", "serialize", "(", "self", ")", ":", "# NOTE: code adapted from https://github.com/django/django/blob/master/django/forms/models.py#L75", "opts", "=", "self", ".", "_meta", "data", "=", "{", "}", "for", "f", "in", "opts", ".", "concrete_fields", ":", "if", "f", ...
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
SyncableModel.deserialize
Returns an unsaved class object based on the valid properties passed in.
morango/models.py
def deserialize(cls, dict_model): """Returns an unsaved class object based on the valid properties passed in.""" kwargs = {} for f in cls._meta.concrete_fields: if f.attname in dict_model: kwargs[f.attname] = dict_model[f.attname] return cls(**kwargs)
def deserialize(cls, dict_model): """Returns an unsaved class object based on the valid properties passed in.""" kwargs = {} for f in cls._meta.concrete_fields: if f.attname in dict_model: kwargs[f.attname] = dict_model[f.attname] return cls(**kwargs)
[ "Returns", "an", "unsaved", "class", "object", "based", "on", "the", "valid", "properties", "passed", "in", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/models.py#L549-L555
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
UUIDField.get_default
Returns the default value for this field.
morango/utils/uuids.py
def get_default(self): """ Returns the default value for this field. """ if self.has_default(): if callable(self.default): default = self.default() if isinstance(default, uuid.UUID): return default.hex return...
def get_default(self): """ Returns the default value for this field. """ if self.has_default(): if callable(self.default): default = self.default() if isinstance(default, uuid.UUID): return default.hex return...
[ "Returns", "the", "default", "value", "for", "this", "field", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/uuids.py#L51-L64
[ "def", "get_default", "(", "self", ")", ":", "if", "self", ".", "has_default", "(", ")", ":", "if", "callable", "(", "self", ".", "default", ")", ":", "default", "=", "self", ".", "default", "(", ")", "if", "isinstance", "(", "default", ",", "uuid", ...
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
UUIDModelMixin.calculate_uuid
Should return a 32-digit hex string for a UUID that is calculated as a function of a set of fields from the model.
morango/utils/uuids.py
def calculate_uuid(self): """Should return a 32-digit hex string for a UUID that is calculated as a function of a set of fields from the model.""" # raise an error if no inputs to the UUID calculation were specified if self.uuid_input_fields is None: raise NotImplementedError("""You...
def calculate_uuid(self): """Should return a 32-digit hex string for a UUID that is calculated as a function of a set of fields from the model.""" # raise an error if no inputs to the UUID calculation were specified if self.uuid_input_fields is None: raise NotImplementedError("""You...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/uuids.py#L82-L112
[ "def", "calculate_uuid", "(", "self", ")", ":", "# raise an error if no inputs to the UUID calculation were specified", "if", "self", ".", "uuid_input_fields", "is", "None", ":", "raise", "NotImplementedError", "(", "\"\"\"You must define either a 'uuid_input_fields' attribute\n ...
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
add_to_deleted_models
Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store.
morango/signals.py
def add_to_deleted_models(sender, instance=None, *args, **kwargs): """ Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store. """ if issubclass(sender, SyncableModel): instance._update_del...
def add_to_deleted_models(sender, instance=None, *args, **kwargs): """ Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store. """ if issubclass(sender, SyncableModel): instance._update_del...
[ "Whenever", "a", "model", "is", "deleted", "we", "record", "its", "ID", "in", "a", "separate", "model", "for", "tracking", "purposes", ".", "During", "serialization", "we", "will", "mark", "the", "model", "as", "deleted", "in", "the", "store", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/signals.py#L8-L14
[ "def", "add_to_deleted_models", "(", "sender", ",", "instance", "=", "None", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "if", "issubclass", "(", "sender", ",", "SyncableModel", ")", ":", "instance", ".", "_update_deleted_models", "(", ")" ]
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
APIWrapper.make_request
Reusable method for performing requests. :param url - URL to request :param method - request method, default is 'get' :param headers - request headers :param data - post data :param callback - callback to be applied to response, default callback will par...
apiwrapper/apiwrapper.py
def make_request(self, url, method='get', headers=None, data=None, callback=None, errors=STRICT, verify=False, timeout=None, **params): """ Reusable method for performing requests. :param url - URL to request :param method - request method, default is 'get' :...
def make_request(self, url, method='get', headers=None, data=None, callback=None, errors=STRICT, verify=False, timeout=None, **params): """ Reusable method for performing requests. :param url - URL to request :param method - request method, default is 'get' :...
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ardydedase/apiwrapper
python
https://github.com/ardydedase/apiwrapper/blob/dd477e9f6fc5706b7a29c61a466cd63427d7c517/apiwrapper/apiwrapper.py#L89-L143
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dd477e9f6fc5706b7a29c61a466cd63427d7c517
valid
APIWrapper._with_error_handling
Static method for error handling. :param resp - API response :param error - Error thrown :param mode - Error mode :param response_format - XML or json
apiwrapper/apiwrapper.py
def _with_error_handling(resp, error, mode, response_format): """ Static method for error handling. :param resp - API response :param error - Error thrown :param mode - Error mode :param response_format - XML or json """ def safe_parse(r): try...
def _with_error_handling(resp, error, mode, response_format): """ Static method for error handling. :param resp - API response :param error - Error thrown :param mode - Error mode :param response_format - XML or json """ def safe_parse(r): try...
[ "Static", "method", "for", "error", "handling", "." ]
ardydedase/apiwrapper
python
https://github.com/ardydedase/apiwrapper/blob/dd477e9f6fc5706b7a29c61a466cd63427d7c517/apiwrapper/apiwrapper.py#L155-L219
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dd477e9f6fc5706b7a29c61a466cd63427d7c517
valid
APIWrapper.poll
Poll the URL :param url - URL to poll, should be returned by 'create_session' call :param initial_delay - specifies how many seconds to wait before the first poll :param delay - specifies how many seconds to wait between the polls :param tries - number of polls to perform :param ...
apiwrapper/apiwrapper.py
def poll(self, url, initial_delay=2, delay=1, tries=20, errors=STRICT, is_complete_callback=None, **params): """ Poll the URL :param url - URL to poll, should be returned by 'create_session' call :param initial_delay - specifies how many seconds to wait before the first poll :par...
def poll(self, url, initial_delay=2, delay=1, tries=20, errors=STRICT, is_complete_callback=None, **params): """ Poll the URL :param url - URL to poll, should be returned by 'create_session' call :param initial_delay - specifies how many seconds to wait before the first poll :par...
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ardydedase/apiwrapper
python
https://github.com/ardydedase/apiwrapper/blob/dd477e9f6fc5706b7a29c61a466cd63427d7c517/apiwrapper/apiwrapper.py#L221-L250
[ "def", "poll", "(", "self", ",", "url", ",", "initial_delay", "=", "2", ",", "delay", "=", "1", ",", "tries", "=", "20", ",", "errors", "=", "STRICT", ",", "is_complete_callback", "=", "None", ",", "*", "*", "params", ")", ":", "time", ".", "sleep"...
dd477e9f6fc5706b7a29c61a466cd63427d7c517
valid
APIWrapper._default_poll_callback
Checks the condition in poll response to determine if it is complete and no subsequent poll requests should be done.
apiwrapper/apiwrapper.py
def _default_poll_callback(self, poll_resp): """ Checks the condition in poll response to determine if it is complete and no subsequent poll requests should be done. """ if poll_resp.parsed is None: return False success_list = ['UpdatesComplete', True, 'COMPLE...
def _default_poll_callback(self, poll_resp): """ Checks the condition in poll response to determine if it is complete and no subsequent poll requests should be done. """ if poll_resp.parsed is None: return False success_list = ['UpdatesComplete', True, 'COMPLE...
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ardydedase/apiwrapper
python
https://github.com/ardydedase/apiwrapper/blob/dd477e9f6fc5706b7a29c61a466cd63427d7c517/apiwrapper/apiwrapper.py#L252-L268
[ "def", "_default_poll_callback", "(", "self", ",", "poll_resp", ")", ":", "if", "poll_resp", ".", "parsed", "is", "None", ":", "return", "False", "success_list", "=", "[", "'UpdatesComplete'", ",", "True", ",", "'COMPLETE'", "]", "status", "=", "None", "if",...
dd477e9f6fc5706b7a29c61a466cd63427d7c517
valid
_fsic_queuing_calc
We set the lower counter between two same instance ids. If an instance_id exists in one fsic but not the other we want to give that counter a value of 0. :param fsic1: dictionary containing (instance_id, counter) pairs :param fsic2: dictionary containing (instance_id, counter) pairs :return ``dict`` of...
morango/utils/sync_utils.py
def _fsic_queuing_calc(fsic1, fsic2): """ We set the lower counter between two same instance ids. If an instance_id exists in one fsic but not the other we want to give that counter a value of 0. :param fsic1: dictionary containing (instance_id, counter) pairs :param fsic2: dictionary containing (i...
def _fsic_queuing_calc(fsic1, fsic2): """ We set the lower counter between two same instance ids. If an instance_id exists in one fsic but not the other we want to give that counter a value of 0. :param fsic1: dictionary containing (instance_id, counter) pairs :param fsic2: dictionary containing (i...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/sync_utils.py#L38-L47
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
_serialize_into_store
Takes data from app layer and serializes the models into the store.
morango/utils/sync_utils.py
def _serialize_into_store(profile, filter=None): """ Takes data from app layer and serializes the models into the store. """ # ensure that we write and retrieve the counter in one go for consistency current_id = InstanceIDModel.get_current_instance_and_increment_counter() with transaction.atomi...
def _serialize_into_store(profile, filter=None): """ Takes data from app layer and serializes the models into the store. """ # ensure that we write and retrieve the counter in one go for consistency current_id = InstanceIDModel.get_current_instance_and_increment_counter() with transaction.atomi...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/sync_utils.py#L49-L152
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
_deserialize_from_store
Takes data from the store and integrates into the application.
morango/utils/sync_utils.py
def _deserialize_from_store(profile): """ Takes data from the store and integrates into the application. """ # we first serialize to avoid deserialization merge conflicts _serialize_into_store(profile) fk_cache = {} with transaction.atomic(): syncable_dict = _profile_models[profile]...
def _deserialize_from_store(profile): """ Takes data from the store and integrates into the application. """ # we first serialize to avoid deserialization merge conflicts _serialize_into_store(profile) fk_cache = {} with transaction.atomic(): syncable_dict = _profile_models[profile]...
[ "Takes", "data", "from", "the", "store", "and", "integrates", "into", "the", "application", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/sync_utils.py#L154-L223
[ "def", "_deserialize_from_store", "(", "profile", ")", ":", "# we first serialize to avoid deserialization merge conflicts", "_serialize_into_store", "(", "profile", ")", "fk_cache", "=", "{", "}", "with", "transaction", ".", "atomic", "(", ")", ":", "syncable_dict", "=...
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
_queue_into_buffer
Takes a chunk of data from the store to be put into the buffer to be sent to another morango instance.
morango/utils/sync_utils.py
def _queue_into_buffer(transfersession): """ Takes a chunk of data from the store to be put into the buffer to be sent to another morango instance. """ last_saved_by_conditions = [] filter_prefixes = Filter(transfersession.filter) server_fsic = json.loads(transfersession.server_fsic) client_...
def _queue_into_buffer(transfersession): """ Takes a chunk of data from the store to be put into the buffer to be sent to another morango instance. """ last_saved_by_conditions = [] filter_prefixes = Filter(transfersession.filter) server_fsic = json.loads(transfersession.server_fsic) client_...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/sync_utils.py#L227-L286
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
_dequeue_into_store
Takes data from the buffers and merges into the store and record max counters.
morango/utils/sync_utils.py
def _dequeue_into_store(transfersession): """ Takes data from the buffers and merges into the store and record max counters. """ with connection.cursor() as cursor: DBBackend._dequeuing_delete_rmcb_records(cursor, transfersession.id) DBBackend._dequeuing_delete_buffered_records(cursor, t...
def _dequeue_into_store(transfersession): """ Takes data from the buffers and merges into the store and record max counters. """ with connection.cursor() as cursor: DBBackend._dequeuing_delete_rmcb_records(cursor, transfersession.id) DBBackend._dequeuing_delete_buffered_records(cursor, t...
[ "Takes", "data", "from", "the", "buffers", "and", "merges", "into", "the", "store", "and", "record", "max", "counters", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/sync_utils.py#L289-L307
[ "def", "_dequeue_into_store", "(", "transfersession", ")", ":", "with", "connection", ".", "cursor", "(", ")", "as", "cursor", ":", "DBBackend", ".", "_dequeuing_delete_rmcb_records", "(", "cursor", ",", "transfersession", ".", "id", ")", "DBBackend", ".", "_deq...
c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
max_parameter_substitution
SQLite has a limit on the max number of variables allowed for parameter substitution. This limit is usually 999, but can be compiled to a different number. This function calculates what the max is for the sqlite version running on the device. We use the calculated value to chunk our SQL bulk insert statements w...
morango/util.py
def max_parameter_substitution(): """ SQLite has a limit on the max number of variables allowed for parameter substitution. This limit is usually 999, but can be compiled to a different number. This function calculates what the max is for the sqlite version running on the device. We use the calculated v...
def max_parameter_substitution(): """ SQLite has a limit on the max number of variables allowed for parameter substitution. This limit is usually 999, but can be compiled to a different number. This function calculates what the max is for the sqlite version running on the device. We use the calculated v...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/util.py#L67-L94
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
BasicMultiArgumentAuthentication.authenticate_credentials
Authenticate the userargs and password against Django auth backends. The "userargs" string may be just the username, or a querystring-encoded set of params.
morango/api/permissions.py
def authenticate_credentials(self, userargs, password, request=None): """ Authenticate the userargs and password against Django auth backends. The "userargs" string may be just the username, or a querystring-encoded set of params. """ credentials = { 'password': pass...
def authenticate_credentials(self, userargs, password, request=None): """ Authenticate the userargs and password against Django auth backends. The "userargs" string may be just the username, or a querystring-encoded set of params. """ credentials = { 'password': pass...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/api/permissions.py#L15-L43
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
_multiple_self_ref_fk_check
We check whether a class has more than 1 FK reference to itself.
morango/utils/register_models.py
def _multiple_self_ref_fk_check(class_model): """ We check whether a class has more than 1 FK reference to itself. """ self_fk = [] for f in class_model._meta.concrete_fields: if f.related_model in self_fk: return True if f.related_model == class_model: self_f...
def _multiple_self_ref_fk_check(class_model): """ We check whether a class has more than 1 FK reference to itself. """ self_fk = [] for f in class_model._meta.concrete_fields: if f.related_model in self_fk: return True if f.related_model == class_model: self_f...
[ "We", "check", "whether", "a", "class", "has", "more", "than", "1", "FK", "reference", "to", "itself", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/register_models.py#L21-L31
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
add_syncable_models
Per profile, adds each model to a dictionary mapping the morango model name to its model class. We sort by ForeignKey dependencies to safely sync data.
morango/utils/register_models.py
def add_syncable_models(): """ Per profile, adds each model to a dictionary mapping the morango model name to its model class. We sort by ForeignKey dependencies to safely sync data. """ import django.apps from morango.models import SyncableModel from morango.manager import SyncableModelMan...
def add_syncable_models(): """ Per profile, adds each model to a dictionary mapping the morango model name to its model class. We sort by ForeignKey dependencies to safely sync data. """ import django.apps from morango.models import SyncableModel from morango.manager import SyncableModelMan...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/register_models.py#L56-L112
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
SQLWrapper._bulk_insert_into_app_models
Example query: `REPLACE INTO model (F1,F2,F3) VALUES (%s, %s, %s), (%s, %s, %s), (%s, %s, %s)` where values=[1,2,3,4,5,6,7,8,9]
morango/utils/backends/sqlite.py
def _bulk_insert_into_app_models(self, cursor, app_model, fields, db_values, placeholder_list): """ Example query: `REPLACE INTO model (F1,F2,F3) VALUES (%s, %s, %s), (%s, %s, %s), (%s, %s, %s)` where values=[1,2,3,4,5,6,7,8,9] """ # calculate and create equal sized chunk...
def _bulk_insert_into_app_models(self, cursor, app_model, fields, db_values, placeholder_list): """ Example query: `REPLACE INTO model (F1,F2,F3) VALUES (%s, %s, %s), (%s, %s, %s), (%s, %s, %s)` where values=[1,2,3,4,5,6,7,8,9] """ # calculate and create equal sized chunk...
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learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/utils/backends/sqlite.py#L18-L37
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
NetworkSyncConnection._request
Generic request method designed to handle any morango endpoint. :param endpoint: constant representing which morango endpoint we are querying :param method: HTTP verb/method for request :param lookup: the pk value for the specific object we are querying :param data: dict that will be fo...
morango/syncsession.py
def _request(self, endpoint, method="GET", lookup=None, data={}, params={}, userargs=None, password=None): """ Generic request method designed to handle any morango endpoint. :param endpoint: constant representing which morango endpoint we are querying :param method: HTTP verb/method fo...
def _request(self, endpoint, method="GET", lookup=None, data={}, params={}, userargs=None, password=None): """ Generic request method designed to handle any morango endpoint. :param endpoint: constant representing which morango endpoint we are querying :param method: HTTP verb/method fo...
[ "Generic", "request", "method", "designed", "to", "handle", "any", "morango", "endpoint", "." ]
learningequality/morango
python
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/syncsession.py#L76-L100
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c3ec2554b026f65ac5f0fc5c9d439277fbac14f9
valid
fuzzyfinder
Args: input (str): A partial string which is typically entered by a user. collection (iterable): A collection of strings which will be filtered based on the `input`. accessor (function): If the `collection` is not an iterable of strings, ...
fuzzyfinder/main.py
def fuzzyfinder(input, collection, accessor=lambda x: x, sort_results=True): """ Args: input (str): A partial string which is typically entered by a user. collection (iterable): A collection of strings which will be filtered based on the `input`. accessor (...
def fuzzyfinder(input, collection, accessor=lambda x: x, sort_results=True): """ Args: input (str): A partial string which is typically entered by a user. collection (iterable): A collection of strings which will be filtered based on the `input`. accessor (...
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amjith/fuzzyfinder
python
https://github.com/amjith/fuzzyfinder/blob/43fe7676cad68e269bbace7bb2fd9b77f2e07da9/fuzzyfinder/main.py#L6-L41
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43fe7676cad68e269bbace7bb2fd9b77f2e07da9
valid
TokenGenerator.create_access_token
Creates an access token. TODO: check valid in hours TODO: maybe specify how often a token can be used
twitcher/tokengenerator.py
def create_access_token(self, valid_in_hours=1, data=None): """ Creates an access token. TODO: check valid in hours TODO: maybe specify how often a token can be used """ data = data or {} token = AccessToken( token=self.generate(), expires...
def create_access_token(self, valid_in_hours=1, data=None): """ Creates an access token. TODO: check valid in hours TODO: maybe specify how often a token can be used """ data = data or {} token = AccessToken( token=self.generate(), expires...
[ "Creates", "an", "access", "token", "." ]
bird-house/twitcher
python
https://github.com/bird-house/twitcher/blob/e6a36b3aeeacf44eec537434b0fb87c09ab54b5f/twitcher/tokengenerator.py#L22-L34
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e6a36b3aeeacf44eec537434b0fb87c09ab54b5f
valid
MongodbServiceStore.save_service
Stores an OWS service in mongodb.
twitcher/store/mongodb.py
def save_service(self, service, overwrite=True): """ Stores an OWS service in mongodb. """ name = namesgenerator.get_sane_name(service.name) if not name: name = namesgenerator.get_random_name() if self.collection.count_documents({'name': name}) > 0: ...
def save_service(self, service, overwrite=True): """ Stores an OWS service in mongodb. """ name = namesgenerator.get_sane_name(service.name) if not name: name = namesgenerator.get_random_name() if self.collection.count_documents({'name': name}) > 0: ...
[ "Stores", "an", "OWS", "service", "in", "mongodb", "." ]
bird-house/twitcher
python
https://github.com/bird-house/twitcher/blob/e6a36b3aeeacf44eec537434b0fb87c09ab54b5f/twitcher/store/mongodb.py#L52-L75
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e6a36b3aeeacf44eec537434b0fb87c09ab54b5f
valid
MongodbServiceStore.list_services
Lists all services in mongodb storage.
twitcher/store/mongodb.py
def list_services(self): """ Lists all services in mongodb storage. """ my_services = [] for service in self.collection.find().sort('name', pymongo.ASCENDING): my_services.append(Service(service)) return my_services
def list_services(self): """ Lists all services in mongodb storage. """ my_services = [] for service in self.collection.find().sort('name', pymongo.ASCENDING): my_services.append(Service(service)) return my_services
[ "Lists", "all", "services", "in", "mongodb", "storage", "." ]
bird-house/twitcher
python
https://github.com/bird-house/twitcher/blob/e6a36b3aeeacf44eec537434b0fb87c09ab54b5f/twitcher/store/mongodb.py#L84-L91
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e6a36b3aeeacf44eec537434b0fb87c09ab54b5f
valid
MongodbServiceStore.fetch_by_name
Gets service for given ``name`` from mongodb storage.
twitcher/store/mongodb.py
def fetch_by_name(self, name): """ Gets service for given ``name`` from mongodb storage. """ service = self.collection.find_one({'name': name}) if not service: raise ServiceNotFound return Service(service)
def fetch_by_name(self, name): """ Gets service for given ``name`` from mongodb storage. """ service = self.collection.find_one({'name': name}) if not service: raise ServiceNotFound return Service(service)
[ "Gets", "service", "for", "given", "name", "from", "mongodb", "storage", "." ]
bird-house/twitcher
python
https://github.com/bird-house/twitcher/blob/e6a36b3aeeacf44eec537434b0fb87c09ab54b5f/twitcher/store/mongodb.py#L93-L100
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e6a36b3aeeacf44eec537434b0fb87c09ab54b5f
valid
MongodbServiceStore.fetch_by_url
Gets service for given ``url`` from mongodb storage.
twitcher/store/mongodb.py
def fetch_by_url(self, url): """ Gets service for given ``url`` from mongodb storage. """ service = self.collection.find_one({'url': url}) if not service: raise ServiceNotFound return Service(service)
def fetch_by_url(self, url): """ Gets service for given ``url`` from mongodb storage. """ service = self.collection.find_one({'url': url}) if not service: raise ServiceNotFound return Service(service)
[ "Gets", "service", "for", "given", "url", "from", "mongodb", "storage", "." ]
bird-house/twitcher
python
https://github.com/bird-house/twitcher/blob/e6a36b3aeeacf44eec537434b0fb87c09ab54b5f/twitcher/store/mongodb.py#L102-L109
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e6a36b3aeeacf44eec537434b0fb87c09ab54b5f
valid
owsproxy
TODO: use ows exceptions
twitcher/owsproxy.py
def owsproxy(request): """ TODO: use ows exceptions """ try: service_name = request.matchdict.get('service_name') extra_path = request.matchdict.get('extra_path') store = servicestore_factory(request.registry) service = store.fetch_by_name(service_name) except Excepti...
def owsproxy(request): """ TODO: use ows exceptions """ try: service_name = request.matchdict.get('service_name') extra_path = request.matchdict.get('extra_path') store = servicestore_factory(request.registry) service = store.fetch_by_name(service_name) except Excepti...
[ "TODO", ":", "use", "ows", "exceptions" ]
bird-house/twitcher
python
https://github.com/bird-house/twitcher/blob/e6a36b3aeeacf44eec537434b0fb87c09ab54b5f/twitcher/owsproxy.py#L133-L146
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e6a36b3aeeacf44eec537434b0fb87c09ab54b5f