partition stringclasses 3
values | func_name stringlengths 1 134 | docstring stringlengths 1 46.9k | path stringlengths 4 223 | original_string stringlengths 75 104k | code stringlengths 75 104k | docstring_tokens listlengths 1 1.97k | repo stringlengths 7 55 | language stringclasses 1
value | url stringlengths 87 315 | code_tokens listlengths 19 28.4k | sha stringlengths 40 40 |
|---|---|---|---|---|---|---|---|---|---|---|---|
valid | NuHeat.request | Make a request to the NuHeat API
:param url: The URL to request
:param method: The type of request to make (GET, POST)
:param data: Data to be sent along with POST requests
:param params: Querystring parameters
:param retry: Attempt to re-authenticate and retry request if necess... | nuheat/api.py | def request(self, url, method="GET", data=None, params=None, retry=True):
"""
Make a request to the NuHeat API
:param url: The URL to request
:param method: The type of request to make (GET, POST)
:param data: Data to be sent along with POST requests
:param params: Query... | def request(self, url, method="GET", data=None, params=None, retry=True):
"""
Make a request to the NuHeat API
:param url: The URL to request
:param method: The type of request to make (GET, POST)
:param data: Data to be sent along with POST requests
:param params: Query... | [
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"NuHeat",
"API"
] | broox/python-nuheat | python | https://github.com/broox/python-nuheat/blob/3a18852dc9465c34cb96eb3a0c84f1a6caa70707/nuheat/api.py#L56-L88 | [
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valid | MathMLParser.handle_starttag | Return representation of html start tag and attributes. | harvestingkit/html_utils.py | def handle_starttag(self, tag, attrs):
"""Return representation of html start tag and attributes."""
if tag in self.mathml_elements:
final_attr = ""
for key, value in attrs:
final_attr += ' {0}="{1}"'.format(key, value)
self.fed.append("<{0}{1}>".forma... | def handle_starttag(self, tag, attrs):
"""Return representation of html start tag and attributes."""
if tag in self.mathml_elements:
final_attr = ""
for key, value in attrs:
final_attr += ' {0}="{1}"'.format(key, value)
self.fed.append("<{0}{1}>".forma... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/html_utils.py#L64-L70 | [
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"form... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | MathMLParser.handle_endtag | Return representation of html end tag. | harvestingkit/html_utils.py | def handle_endtag(self, tag):
"""Return representation of html end tag."""
if tag in self.mathml_elements:
self.fed.append("</{0}>".format(tag)) | def handle_endtag(self, tag):
"""Return representation of html end tag."""
if tag in self.mathml_elements:
self.fed.append("</{0}>".format(tag)) | [
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valid | MathMLParser.html_to_text | Return stripped HTML, keeping only MathML. | harvestingkit/html_utils.py | def html_to_text(cls, html):
"""Return stripped HTML, keeping only MathML."""
s = cls()
s.feed(html)
unescaped_data = s.unescape(s.get_data())
return escape_for_xml(unescaped_data, tags_to_keep=s.mathml_elements) | def html_to_text(cls, html):
"""Return stripped HTML, keeping only MathML."""
s = cls()
s.feed(html)
unescaped_data = s.unescape(s.get_data())
return escape_for_xml(unescaped_data, tags_to_keep=s.mathml_elements) | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/html_utils.py#L90-L95 | [
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valid | CallbackInspect.is_instance | return True if callback is an instance of a class | captain/parse.py | def is_instance(self):
"""return True if callback is an instance of a class"""
ret = False
val = self.callback
if self.is_class(): return False
ret = not inspect.isfunction(val) and not inspect.ismethod(val)
# if is_py2:
# ret = isinstance(val, types.Instance... | def is_instance(self):
"""return True if callback is an instance of a class"""
ret = False
val = self.callback
if self.is_class(): return False
ret = not inspect.isfunction(val) and not inspect.ismethod(val)
# if is_py2:
# ret = isinstance(val, types.Instance... | [
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] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L97-L111 | [
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valid | CallbackInspect.is_function | return True if callback is a vanilla plain jane function | captain/parse.py | def is_function(self):
"""return True if callback is a vanilla plain jane function"""
if self.is_instance() or self.is_class(): return False
return isinstance(self.callback, (Callable, classmethod)) | def is_function(self):
"""return True if callback is a vanilla plain jane function"""
if self.is_instance() or self.is_class(): return False
return isinstance(self.callback, (Callable, classmethod)) | [
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] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L113-L116 | [
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")... | 4297f32961d423a10d0f053bc252e29fbe939a47 |
valid | ScriptKwarg.merge_kwargs | these kwargs come from the @arg decorator, they are then merged into any
keyword arguments that were automatically generated from the main function
introspection | captain/parse.py | def merge_kwargs(self, kwargs):
"""these kwargs come from the @arg decorator, they are then merged into any
keyword arguments that were automatically generated from the main function
introspection"""
if kwargs:
self.parser_kwargs.update(kwargs)
#self.parser_kwargs['d... | def merge_kwargs(self, kwargs):
"""these kwargs come from the @arg decorator, they are then merged into any
keyword arguments that were automatically generated from the main function
introspection"""
if kwargs:
self.parser_kwargs.update(kwargs)
#self.parser_kwargs['d... | [
"these",
"kwargs",
"come",
"from",
"the"
] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L200-L228 | [
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"... | 4297f32961d423a10d0f053bc252e29fbe939a47 |
valid | ScriptKwarg.merge_from_list | find any matching parser_args from list_args and merge them into this
instance
list_args -- list -- an array of (args, kwargs) tuples | captain/parse.py | def merge_from_list(self, list_args):
"""find any matching parser_args from list_args and merge them into this
instance
list_args -- list -- an array of (args, kwargs) tuples
"""
def xs(name, parser_args, list_args):
"""build the generator of matching list_args"""
... | def merge_from_list(self, list_args):
"""find any matching parser_args from list_args and merge them into this
instance
list_args -- list -- an array of (args, kwargs) tuples
"""
def xs(name, parser_args, list_args):
"""build the generator of matching list_args"""
... | [
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] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L230-L249 | [
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valid | ScriptKwarg.set_default | this is used for introspection from the main() method when there is an
argument with a default value, this figures out how to set up the ArgParse
arguments | captain/parse.py | def set_default(self, na):
"""this is used for introspection from the main() method when there is an
argument with a default value, this figures out how to set up the ArgParse
arguments"""
kwargs = {}
if isinstance(na, (type, types.FunctionType)):
# if foo=some_func t... | def set_default(self, na):
"""this is used for introspection from the main() method when there is an
argument with a default value, this figures out how to set up the ArgParse
arguments"""
kwargs = {}
if isinstance(na, (type, types.FunctionType)):
# if foo=some_func t... | [
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] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L251-L305 | [
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"kwargs"... | 4297f32961d423a10d0f053bc252e29fbe939a47 |
valid | HelpFormatter._fill_text | Overridden to not get rid of newlines
https://github.com/python/cpython/blob/2.7/Lib/argparse.py#L620 | captain/parse.py | def _fill_text(self, text, width, indent):
"""Overridden to not get rid of newlines
https://github.com/python/cpython/blob/2.7/Lib/argparse.py#L620"""
lines = []
for line in text.splitlines(False):
if line:
# https://docs.python.org/2/library/textwrap.html
... | def _fill_text(self, text, width, indent):
"""Overridden to not get rid of newlines
https://github.com/python/cpython/blob/2.7/Lib/argparse.py#L620"""
lines = []
for line in text.splitlines(False):
if line:
# https://docs.python.org/2/library/textwrap.html
... | [
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"rid",
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"newlines"
] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L382-L401 | [
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"l... | 4297f32961d423a10d0f053bc252e29fbe939a47 |
valid | ArgParser.parse_callback_args | This is the method that is called from Script.run(), this is the insertion
point for parsing all the arguments though on init this will find all args it
can, so this method pulls already found args from class variables | captain/parse.py | def parse_callback_args(self, raw_args):
"""This is the method that is called from Script.run(), this is the insertion
point for parsing all the arguments though on init this will find all args it
can, so this method pulls already found args from class variables"""
args = []
arg_... | def parse_callback_args(self, raw_args):
"""This is the method that is called from Script.run(), this is the insertion
point for parsing all the arguments though on init this will find all args it
can, so this method pulls already found args from class variables"""
args = []
arg_... | [
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valid | ArgParser.find_args | when a new parser is created this is the method that is called from its
__init__ method to find all the arguments | captain/parse.py | def find_args(self):
"""when a new parser is created this is the method that is called from its
__init__ method to find all the arguments"""
arg_info = self.arg_info
main = self.callback
cbi = CallbackInspect(main)
all_arg_names = set()
decorator_args = cbi.args
... | def find_args(self):
"""when a new parser is created this is the method that is called from its
__init__ method to find all the arguments"""
arg_info = self.arg_info
main = self.callback
cbi = CallbackInspect(main)
all_arg_names = set()
decorator_args = cbi.args
... | [
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] | Jaymon/captain | python | https://github.com/Jaymon/captain/blob/4297f32961d423a10d0f053bc252e29fbe939a47/captain/parse.py#L503-L589 | [
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... | 4297f32961d423a10d0f053bc252e29fbe939a47 |
valid | Parser.normalize_quiet_arg | This is a hack to allow `--quiet` and `--quiet DI` to work correctly,
basically it goes through all arg_strings and if it finds --quiet it checks
the next argument to see if it is some combination of DIWEC, if it is then
it combines it to `--quiet=ARG` and returns the modified arg_strings list
... | captain/parse.py | def normalize_quiet_arg(self, arg_strings):
"""This is a hack to allow `--quiet` and `--quiet DI` to work correctly,
basically it goes through all arg_strings and if it finds --quiet it checks
the next argument to see if it is some combination of DIWEC, if it is then
it combines it to `-... | def normalize_quiet_arg(self, arg_strings):
"""This is a hack to allow `--quiet` and `--quiet DI` to work correctly,
basically it goes through all arg_strings and if it finds --quiet it checks
the next argument to see if it is some combination of DIWEC, if it is then
it combines it to `-... | [
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... | 4297f32961d423a10d0f053bc252e29fbe939a47 |
valid | make_user_agent | create string suitable for HTTP User-Agent header | harvestingkit/utils.py | def make_user_agent(component=None):
""" create string suitable for HTTP User-Agent header """
packageinfo = pkg_resources.require("harvestingkit")[0]
useragent = "{0}/{1}".format(packageinfo.project_name, packageinfo.version)
if component is not None:
useragent += " {0}".format(component)
r... | def make_user_agent(component=None):
""" create string suitable for HTTP User-Agent header """
packageinfo = pkg_resources.require("harvestingkit")[0]
useragent = "{0}/{1}".format(packageinfo.project_name, packageinfo.version)
if component is not None:
useragent += " {0}".format(component)
r... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L40-L46 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_add_field | Add a MARCXML datafield as a new child to a XML document. | harvestingkit/utils.py | def record_add_field(rec, tag, ind1='', ind2='', subfields=[],
controlfield_value=''):
"""Add a MARCXML datafield as a new child to a XML document."""
if controlfield_value:
doc = etree.Element("controlfield",
attrib={
"tag... | def record_add_field(rec, tag, ind1='', ind2='', subfields=[],
controlfield_value=''):
"""Add a MARCXML datafield as a new child to a XML document."""
if controlfield_value:
doc = etree.Element("controlfield",
attrib={
"tag... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L54-L74 | [
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"controlfield_value",
":",
"doc",
"=",
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".",
"Element",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_xml_output | Given a document, return XML prettified. | harvestingkit/utils.py | def record_xml_output(rec, pretty=True):
"""Given a document, return XML prettified."""
from .html_utils import MathMLParser
ret = etree.tostring(rec, xml_declaration=False)
# Special MathML handling
ret = re.sub("(<)(([\/]?{0}))".format("|[\/]?".join(MathMLParser.mathml_elements)), '<\g<2>', re... | def record_xml_output(rec, pretty=True):
"""Given a document, return XML prettified."""
from .html_utils import MathMLParser
ret = etree.tostring(rec, xml_declaration=False)
# Special MathML handling
ret = re.sub("(<)(([\/]?{0}))".format("|[\/]?".join(MathMLParser.mathml_elements)), '<\g<2>', re... | [
"Given",
"a",
"document",
"return",
"XML",
"prettified",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L77-L92 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | escape_for_xml | Transform & and < to XML valid & and <.
Pass a list of tags as string to enable replacement of
'<' globally but keep any XML tags in the list. | harvestingkit/utils.py | def escape_for_xml(data, tags_to_keep=None):
"""Transform & and < to XML valid & and <.
Pass a list of tags as string to enable replacement of
'<' globally but keep any XML tags in the list.
"""
data = re.sub("&", "&", data)
if tags_to_keep:
data = re.sub(r"(<)(?![\/]?({0})\b)... | def escape_for_xml(data, tags_to_keep=None):
"""Transform & and < to XML valid & and <.
Pass a list of tags as string to enable replacement of
'<' globally but keep any XML tags in the list.
"""
data = re.sub("&", "&", data)
if tags_to_keep:
data = re.sub(r"(<)(?![\/]?({0})\b)... | [
"Transform",
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"valid",
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";",
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"<",
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L95-L106 | [
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"r\"(<)(?![\\/]?({0})\\b)\""... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | format_arxiv_id | Properly format arXiv IDs. | harvestingkit/utils.py | def format_arxiv_id(arxiv_id):
"""Properly format arXiv IDs."""
if arxiv_id and "/" not in arxiv_id and "arXiv" not in arxiv_id:
return "arXiv:%s" % (arxiv_id,)
elif arxiv_id and '.' not in arxiv_id and arxiv_id.lower().startswith('arxiv:'):
return arxiv_id[6:] # strip away arxiv: for old i... | def format_arxiv_id(arxiv_id):
"""Properly format arXiv IDs."""
if arxiv_id and "/" not in arxiv_id and "arXiv" not in arxiv_id:
return "arXiv:%s" % (arxiv_id,)
elif arxiv_id and '.' not in arxiv_id and arxiv_id.lower().startswith('arxiv:'):
return arxiv_id[6:] # strip away arxiv: for old i... | [
"Properly",
"format",
"arXiv",
"IDs",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L138-L145 | [
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"n... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | collapse_initials | Remove the space between initials, eg T. A. --> T.A. | harvestingkit/utils.py | def collapse_initials(name):
"""Remove the space between initials, eg T. A. --> T.A."""
if len(name.split(".")) > 1:
name = re.sub(r'([A-Z]\.)[\s\-]+(?=[A-Z]\.)', r'\1', name)
return name | def collapse_initials(name):
"""Remove the space between initials, eg T. A. --> T.A."""
if len(name.split(".")) > 1:
name = re.sub(r'([A-Z]\.)[\s\-]+(?=[A-Z]\.)', r'\1', name)
return name | [
"Remove",
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".",
"A",
".",
"--",
">",
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".",
"A",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L153-L157 | [
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"name... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | fix_journal_name | Convert journal name to Inspire's short form. | harvestingkit/utils.py | def fix_journal_name(journal, knowledge_base):
"""Convert journal name to Inspire's short form."""
if not journal:
return '', ''
if not knowledge_base:
return journal, ''
if len(journal) < 2:
return journal, ''
volume = ''
if (journal[-1] <= 'Z' and journal[-1] >= 'A') \
... | def fix_journal_name(journal, knowledge_base):
"""Convert journal name to Inspire's short form."""
if not journal:
return '', ''
if not knowledge_base:
return journal, ''
if len(journal) < 2:
return journal, ''
volume = ''
if (journal[-1] <= 'Z' and journal[-1] >= 'A') \
... | [
"Convert",
"journal",
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"Inspire",
"s",
"short",
"form",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L160-L186 | [
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"re... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | add_nations_field | Add correct nations field according to mapping in NATIONS_DEFAULT_MAP. | harvestingkit/utils.py | def add_nations_field(authors_subfields):
"""Add correct nations field according to mapping in NATIONS_DEFAULT_MAP."""
from .config import NATIONS_DEFAULT_MAP
result = []
for field in authors_subfields:
if field[0] == 'v':
values = [x.replace('.', '') for x in field[1].split(', ')]
... | def add_nations_field(authors_subfields):
"""Add correct nations field according to mapping in NATIONS_DEFAULT_MAP."""
from .config import NATIONS_DEFAULT_MAP
result = []
for field in authors_subfields:
if field[0] == 'v':
values = [x.replace('.', '') for x in field[1].split(', ')]
... | [
"Add",
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"according",
"to",
"mapping",
"in",
"NATIONS_DEFAULT_MAP",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L189-L210 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | fix_dashes | Fix bad Unicode special dashes in string. | harvestingkit/utils.py | def fix_dashes(string):
"""Fix bad Unicode special dashes in string."""
string = string.replace(u'\u05BE', '-')
string = string.replace(u'\u1806', '-')
string = string.replace(u'\u2E3A', '-')
string = string.replace(u'\u2E3B', '-')
string = unidecode(string)
return re.sub(r'--+', '-', string... | def fix_dashes(string):
"""Fix bad Unicode special dashes in string."""
string = string.replace(u'\u05BE', '-')
string = string.replace(u'\u1806', '-')
string = string.replace(u'\u2E3A', '-')
string = string.replace(u'\u2E3B', '-')
string = unidecode(string)
return re.sub(r'--+', '-', string... | [
"Fix",
"bad",
"Unicode",
"special",
"dashes",
"in",
"string",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L213-L220 | [
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"u'\\u... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | fix_title_capitalization | Try to capitalize properly a title string. | harvestingkit/utils.py | def fix_title_capitalization(title):
"""Try to capitalize properly a title string."""
if re.search("[A-Z]", title) and re.search("[a-z]", title):
return title
word_list = re.split(' +', title)
final = [word_list[0].capitalize()]
for word in word_list[1:]:
if word.upper() in COMMON_AC... | def fix_title_capitalization(title):
"""Try to capitalize properly a title string."""
if re.search("[A-Z]", title) and re.search("[a-z]", title):
return title
word_list = re.split(' +', title)
final = [word_list[0].capitalize()]
for word in word_list[1:]:
if word.upper() in COMMON_AC... | [
"Try",
"to",
"capitalize",
"properly",
"a",
"title",
"string",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L223-L236 | [
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"(... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | convert_html_subscripts_to_latex | Convert some HTML tags to latex equivalents. | harvestingkit/utils.py | def convert_html_subscripts_to_latex(text):
"""Convert some HTML tags to latex equivalents."""
text = re.sub("<sub>(.*?)</sub>", r"$_{\1}$", text)
text = re.sub("<sup>(.*?)</sup>", r"$^{\1}$", text)
return text | def convert_html_subscripts_to_latex(text):
"""Convert some HTML tags to latex equivalents."""
text = re.sub("<sub>(.*?)</sub>", r"$_{\1}$", text)
text = re.sub("<sup>(.*?)</sup>", r"$^{\1}$", text)
return text | [
"Convert",
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"tags",
"to",
"latex",
"equivalents",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L239-L243 | [
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"text",... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | download_file | Download URL to a file. | harvestingkit/utils.py | def download_file(from_url, to_filename=None,
chunk_size=1024 * 8, retry_count=3):
"""Download URL to a file."""
if not to_filename:
to_filename = get_temporary_file()
session = requests.Session()
adapter = requests.adapters.HTTPAdapter(max_retries=retry_count)
session.mou... | def download_file(from_url, to_filename=None,
chunk_size=1024 * 8, retry_count=3):
"""Download URL to a file."""
if not to_filename:
to_filename = get_temporary_file()
session = requests.Session()
adapter = requests.adapters.HTTPAdapter(max_retries=retry_count)
session.mou... | [
"Download",
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"to",
"a",
"file",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L246-L259 | [
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"=",... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | run_shell_command | Run a shell command. | harvestingkit/utils.py | def run_shell_command(commands, **kwargs):
"""Run a shell command."""
p = subprocess.Popen(commands,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
**kwargs)
output, error = p.communicate()
return p.returncode, output, error | def run_shell_command(commands, **kwargs):
"""Run a shell command."""
p = subprocess.Popen(commands,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
**kwargs)
output, error = p.communicate()
return p.returncode, output, error | [
"Run",
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L262-L269 | [
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valid | create_logger | Create a logger object. | harvestingkit/utils.py | def create_logger(name,
filename=None,
logging_level=logging.DEBUG):
"""Create a logger object."""
logger = logging.getLogger(name)
formatter = logging.Formatter(('%(asctime)s - %(name)s - '
'%(levelname)-8s - %(message)s'))
if file... | def create_logger(name,
filename=None,
logging_level=logging.DEBUG):
"""Create a logger object."""
logger = logging.getLogger(name)
formatter = logging.Formatter(('%(asctime)s - %(name)s - '
'%(levelname)-8s - %(message)s'))
if file... | [
"Create",
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"logger",
"object",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L272-L291 | [
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valid | unzip | Uncompress a zipped file from given filepath to an (optional) location.
If no location is given, a temporary folder will be generated inside
CFG_TMPDIR, prefixed with "apsharvest_unzip_". | harvestingkit/utils.py | def unzip(zipped_file, output_directory=None,
prefix="harvestingkit_unzip_", suffix=""):
"""Uncompress a zipped file from given filepath to an (optional) location.
If no location is given, a temporary folder will be generated inside
CFG_TMPDIR, prefixed with "apsharvest_unzip_".
"""
if no... | def unzip(zipped_file, output_directory=None,
prefix="harvestingkit_unzip_", suffix=""):
"""Uncompress a zipped file from given filepath to an (optional) location.
If no location is given, a temporary folder will be generated inside
CFG_TMPDIR, prefixed with "apsharvest_unzip_".
"""
if no... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L294-L312 | [
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"try",
":... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | _do_unzip | Perform the actual uncompression. | harvestingkit/utils.py | def _do_unzip(zipped_file, output_directory):
"""Perform the actual uncompression."""
z = zipfile.ZipFile(zipped_file)
for path in z.namelist():
relative_path = os.path.join(output_directory, path)
dirname, dummy = os.path.split(relative_path)
try:
if relative_path.endswi... | def _do_unzip(zipped_file, output_directory):
"""Perform the actual uncompression."""
z = zipfile.ZipFile(zipped_file)
for path in z.namelist():
relative_path = os.path.join(output_directory, path)
dirname, dummy = os.path.split(relative_path)
try:
if relative_path.endswi... | [
"Perform",
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L315-L333 | [
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valid | locate | Locate all files matching supplied filename pattern recursively. | harvestingkit/utils.py | def locate(pattern, root=os.curdir):
"""Locate all files matching supplied filename pattern recursively."""
for path, dummy, files in os.walk(os.path.abspath(root)):
for filename in fnmatch.filter(files, pattern):
yield os.path.join(path, filename) | def locate(pattern, root=os.curdir):
"""Locate all files matching supplied filename pattern recursively."""
for path, dummy, files in os.walk(os.path.abspath(root)):
for filename in fnmatch.filter(files, pattern):
yield os.path.join(path, filename) | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L336-L340 | [
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"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | punctuate_authorname | Punctuate author names properly.
Expects input in the form 'Bloggs, J K' and will return 'Bloggs, J. K.'. | harvestingkit/utils.py | def punctuate_authorname(an):
"""Punctuate author names properly.
Expects input in the form 'Bloggs, J K' and will return 'Bloggs, J. K.'.
"""
name = an.strip()
parts = [x for x in name.split(',') if x != '']
ret_str = ''
for idx, part in enumerate(parts):
subparts = part.strip().sp... | def punctuate_authorname(an):
"""Punctuate author names properly.
Expects input in the form 'Bloggs, J K' and will return 'Bloggs, J. K.'.
"""
name = an.strip()
parts = [x for x in name.split(',') if x != '']
ret_str = ''
for idx, part in enumerate(parts):
subparts = part.strip().sp... | [
"Punctuate",
"author",
"names",
"properly",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L343-L361 | [
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",",... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | convert_date_to_iso | Convert a date-value to the ISO date standard. | harvestingkit/utils.py | def convert_date_to_iso(value):
"""Convert a date-value to the ISO date standard."""
date_formats = ["%d %b %Y", "%Y/%m/%d"]
for dformat in date_formats:
try:
date = datetime.strptime(value, dformat)
return date.strftime("%Y-%m-%d")
except ValueError:
pass... | def convert_date_to_iso(value):
"""Convert a date-value to the ISO date standard."""
date_formats = ["%d %b %Y", "%Y/%m/%d"]
for dformat in date_formats:
try:
date = datetime.strptime(value, dformat)
return date.strftime("%Y-%m-%d")
except ValueError:
pass... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L364-L373 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | convert_date_from_iso_to_human | Convert a date-value to the ISO date standard for humans. | harvestingkit/utils.py | def convert_date_from_iso_to_human(value):
"""Convert a date-value to the ISO date standard for humans."""
try:
year, month, day = value.split("-")
except ValueError:
# Not separated by "-". Space?
try:
year, month, day = value.split(" ")
except ValueError:
... | def convert_date_from_iso_to_human(value):
"""Convert a date-value to the ISO date standard for humans."""
try:
year, month, day = value.split("-")
except ValueError:
# Not separated by "-". Space?
try:
year, month, day = value.split(" ")
except ValueError:
... | [
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"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | convert_images | Convert list of images to PNG format.
@param: image_list ([string, string, ...]): the list of image files
extracted from the tarball in step 1
@return: image_list ([str, str, ...]): The list of image files when all
have been converted to PNG format. | harvestingkit/utils.py | def convert_images(image_list):
"""Convert list of images to PNG format.
@param: image_list ([string, string, ...]): the list of image files
extracted from the tarball in step 1
@return: image_list ([str, str, ...]): The list of image files when all
have been converted to PNG format.
"... | def convert_images(image_list):
"""Convert list of images to PNG format.
@param: image_list ([string, string, ...]): the list of image files
extracted from the tarball in step 1
@return: image_list ([str, str, ...]): The list of image files when all
have been converted to PNG format.
"... | [
"Convert",
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"of",
"images",
"to",
"PNG",
"format",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L425-L455 | [
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"dummy1"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | get_temporary_file | Generate a safe and closed filepath. | harvestingkit/utils.py | def get_temporary_file(prefix="tmp_",
suffix="",
directory=None):
"""Generate a safe and closed filepath."""
try:
file_fd, filepath = mkstemp(prefix=prefix,
suffix=suffix,
dir=directory)... | def get_temporary_file(prefix="tmp_",
suffix="",
directory=None):
"""Generate a safe and closed filepath."""
try:
file_fd, filepath = mkstemp(prefix=prefix,
suffix=suffix,
dir=directory)... | [
"Generate",
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"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L458-L473 | [
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"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | return_letters_from_string | Get letters from string only. | harvestingkit/utils.py | def return_letters_from_string(text):
"""Get letters from string only."""
out = ""
for letter in text:
if letter.isalpha():
out += letter
return out | def return_letters_from_string(text):
"""Get letters from string only."""
out = ""
for letter in text:
if letter.isalpha():
out += letter
return out | [
"Get",
"letters",
"from",
"string",
"only",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L476-L482 | [
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"+=",
"letter",
"return",
"out"
] | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | license_is_oa | Return True if license is compatible with Open Access | harvestingkit/utils.py | def license_is_oa(license):
"""Return True if license is compatible with Open Access"""
for oal in OA_LICENSES:
if re.search(oal, license):
return True
return False | def license_is_oa(license):
"""Return True if license is compatible with Open Access"""
for oal in OA_LICENSES:
if re.search(oal, license):
return True
return False | [
"Return",
"True",
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"compatible",
"with",
"Open",
"Access"
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/utils.py#L484-L489 | [
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"return",
"True",
"return",
"False"
] | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage._extract_package | Extract a package in a new temporary directory. | harvestingkit/elsevier_package.py | def _extract_package(self):
"""
Extract a package in a new temporary directory.
"""
self.path = mkdtemp(prefix="scoap3_package_", dir=CFG_TMPSHAREDDIR)
self.logger.debug("Extracting package: %s" % (self.package_name,))
scoap3utils_extract_package(self.package_name, self.p... | def _extract_package(self):
"""
Extract a package in a new temporary directory.
"""
self.path = mkdtemp(prefix="scoap3_package_", dir=CFG_TMPSHAREDDIR)
self.logger.debug("Extracting package: %s" % (self.package_name,))
scoap3utils_extract_package(self.package_name, self.p... | [
"Extract",
"a",
"package",
"in",
"a",
"new",
"temporary",
"directory",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/elsevier_package.py#L159-L165 | [
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"\"Extracting package: %s\"",
"%",
"(",
"sel... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage._crawl_elsevier_and_find_main_xml | A package contains several subdirectory corresponding to each article.
An article is actually identified by the existence of a main.pdf and
a main.xml in a given directory. | harvestingkit/elsevier_package.py | def _crawl_elsevier_and_find_main_xml(self):
"""
A package contains several subdirectory corresponding to each article.
An article is actually identified by the existence of a main.pdf and
a main.xml in a given directory.
"""
self.found_articles = []
if not self.p... | def _crawl_elsevier_and_find_main_xml(self):
"""
A package contains several subdirectory corresponding to each article.
An article is actually identified by the existence of a main.pdf and
a main.xml in a given directory.
"""
self.found_articles = []
if not self.p... | [
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"and",
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"in",
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"give... | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/elsevier_package.py#L167-L192 | [
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"conn",
".",
"found_articles... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage._crawl_elsevier_and_find_issue_xml | Information about the current volume, issue, etc. is available
in a file called issue.xml that is available in a higher directory. | harvestingkit/elsevier_package.py | def _crawl_elsevier_and_find_issue_xml(self):
"""
Information about the current volume, issue, etc. is available
in a file called issue.xml that is available in a higher directory.
"""
self._found_issues = []
if not self.path and not self.package_name:
for iss... | def _crawl_elsevier_and_find_issue_xml(self):
"""
Information about the current volume, issue, etc. is available
in a file called issue.xml that is available in a higher directory.
"""
self._found_issues = []
if not self.path and not self.package_name:
for iss... | [
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".",
"xml",
"that",
"is",
"available",
"in",
"a",
"higher",
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"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/elsevier_package.py#L194-L219 | [
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".",
"conn",
".",
"_get_issues"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage._normalize_issue_dir_with_dtd | issue.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the issue.xml file
and normalize it using xmllint in order to resolve all namespaces
and references. | harvestingkit/elsevier_package.py | def _normalize_issue_dir_with_dtd(self, path):
"""
issue.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the issue.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
if exis... | def _normalize_issue_dir_with_dtd(self, path):
"""
issue.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the issue.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
if exis... | [
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"o... | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/elsevier_package.py#L231-L261 | [
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"'issue.xml'",
")",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage._normalize_article_dir_with_dtd | main.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references. | harvestingkit/elsevier_package.py | def _normalize_article_dir_with_dtd(self, path):
"""
main.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
if exis... | def _normalize_article_dir_with_dtd(self, path):
"""
main.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
if exis... | [
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"join",
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"'main.xml'",
")",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage.get_publication_date | Return the best effort start_date. | harvestingkit/elsevier_package.py | def get_publication_date(self, xml_doc):
"""Return the best effort start_date."""
start_date = get_value_in_tag(xml_doc, "prism:coverDate")
if not start_date:
start_date = get_value_in_tag(xml_doc, "prism:coverDisplayDate")
if not start_date:
start_date = ... | def get_publication_date(self, xml_doc):
"""Return the best effort start_date."""
start_date = get_value_in_tag(xml_doc, "prism:coverDate")
if not start_date:
start_date = get_value_in_tag(xml_doc, "prism:coverDisplayDate")
if not start_date:
start_date = ... | [
"Return",
"the",
"best",
"effort",
"start_date",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/elsevier_package.py#L632-L665 | [
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",",
"\"prism:cover... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | ElsevierPackage.get_record | Convert a record to MARCXML format.
:param path: path to a record.
:type path: string
:param test: flag to determine if it is a test call.
:type test: bool
:param refextract_callback: callback to be used to extract
unstructured references. It ... | harvestingkit/elsevier_package.py | def get_record(self, path=None, no_pdf=False,
test=False, refextract_callback=None):
"""Convert a record to MARCXML format.
:param path: path to a record.
:type path: string
:param test: flag to determine if it is a test call.
:type test: bool
:param r... | def get_record(self, path=None, no_pdf=False,
test=False, refextract_callback=None):
"""Convert a record to MARCXML format.
:param path: path to a record.
:type path: string
:param test: flag to determine if it is a test call.
:type test: bool
:param r... | [
"Convert",
"a",
"record",
"to",
"MARCXML",
"format",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/elsevier_package.py#L864-L1083 | [
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"path",
")",
"rec",
"=",
"create_rec... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | extract_oembeds | Extract oembed resources from a block of text. Returns a list
of dictionaries.
Max width & height can be specified:
{% for embed in block_of_text|extract_oembeds:"400x300" %}
Resource type can be specified:
{% for photo_embed in block_of_text|extract_oembeds:"photo" %}
Or both:
{% for em... | oembed/templatetags/oembed_tags.py | def extract_oembeds(text, args=None):
"""
Extract oembed resources from a block of text. Returns a list
of dictionaries.
Max width & height can be specified:
{% for embed in block_of_text|extract_oembeds:"400x300" %}
Resource type can be specified:
{% for photo_embed in block_of_text|extr... | def extract_oembeds(text, args=None):
"""
Extract oembed resources from a block of text. Returns a list
of dictionaries.
Max width & height can be specified:
{% for embed in block_of_text|extract_oembeds:"400x300" %}
Resource type can be specified:
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valid | strip_oembeds | Take a block of text and strip all the embeds from it, optionally taking
a maxwidth, maxheight / resource_type
Usage:
{{ post.content|strip_embeds }}
{{ post.content|strip_embeds:"600x600xphoto" }}
{{ post.content|strip_embeds:"video" }} | oembed/templatetags/oembed_tags.py | def strip_oembeds(text, args=None):
"""
Take a block of text and strip all the embeds from it, optionally taking
a maxwidth, maxheight / resource_type
Usage:
{{ post.content|strip_embeds }}
{{ post.content|strip_embeds:"600x600xphoto" }}
{{ post.content|strip_embeds:"video" }}... | def strip_oembeds(text, args=None):
"""
Take a block of text and strip all the embeds from it, optionally taking
a maxwidth, maxheight / resource_type
Usage:
{{ post.content|strip_embeds }}
{{ post.content|strip_embeds:"600x600xphoto" }}
{{ post.content|strip_embeds:"video" }}... | [
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valid | do_oembed | A node which parses everything between its two nodes, and replaces any links
with OEmbed-provided objects, if possible.
Supports two optional argument, which is the maximum width and height,
specified like so:
{% oembed 640x480 %}http://www.viddler.com/explore/SYSTM/videos/49/{% endoembed %}
and ... | oembed/templatetags/oembed_tags.py | def do_oembed(parser, token):
"""
A node which parses everything between its two nodes, and replaces any links
with OEmbed-provided objects, if possible.
Supports two optional argument, which is the maximum width and height,
specified like so:
{% oembed 640x480 %}http://www.viddler.com/explore... | def do_oembed(parser, token):
"""
A node which parses everything between its two nodes, and replaces any links
with OEmbed-provided objects, if possible.
Supports two optional argument, which is the maximum width and height,
specified like so:
{% oembed 640x480 %}http://www.viddler.com/explore... | [
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valid | do_autodiscover | Generates a <link> tag with oembed autodiscovery bits for an object.
{% oembed_autodiscover video %} | oembed/templatetags/oembed_tags.py | def do_autodiscover(parser, token):
"""
Generates a <link> tag with oembed autodiscovery bits for an object.
{% oembed_autodiscover video %}
"""
args = token.split_contents()
if len(args) != 2:
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{% oembed_autodiscover video %}
"""
args = token.split_contents()
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valid | do_url_scheme | Generates a <link> tag with oembed autodiscovery bits.
{% oembed_url_scheme %} | oembed/templatetags/oembed_tags.py | def do_url_scheme(parser, token):
"""
Generates a <link> tag with oembed autodiscovery bits.
{% oembed_url_scheme %}
"""
args = token.split_contents()
if len(args) != 1:
raise template.TemplateSyntaxError('%s takes no parameters.' % args[0])
return OEmbedURLSchemeNode() | def do_url_scheme(parser, token):
"""
Generates a <link> tag with oembed autodiscovery bits.
{% oembed_url_scheme %}
"""
args = token.split_contents()
if len(args) != 1:
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return OEmbedURLSchemeNode() | [
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valid | exit | A stand-in for the normal sys.exit()
all the magic happens here, when this is called at the end of a script it will
figure out all the available commands and arguments that can be passed in,
then handle exiting the script and returning the status code.
:Example:
from captain import exit
... | captain/__init__.py | def exit(mod_name=""):
"""A stand-in for the normal sys.exit()
all the magic happens here, when this is called at the end of a script it will
figure out all the available commands and arguments that can be passed in,
then handle exiting the script and returning the status code.
:Example:
... | def exit(mod_name=""):
"""A stand-in for the normal sys.exit()
all the magic happens here, when this is called at the end of a script it will
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then handle exiting the script and returning the status code.
:Example:
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valid | Script.parser | return the parser for the current name | captain/__init__.py | def parser(self):
"""return the parser for the current name"""
module = self.module
subcommands = self.subcommands
if subcommands:
module_desc = inspect.getdoc(module)
parser = Parser(description=module_desc, module=module)
subparsers = parser.add_sub... | def parser(self):
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valid | Script.module | load the module so we can actually run the script's function | captain/__init__.py | def module(self):
"""load the module so we can actually run the script's function"""
# we have to guard this value because:
# https://thingspython.wordpress.com/2010/09/27/another-super-wrinkle-raising-typeerror/
if not hasattr(self, '_module'):
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... | def module(self):
"""load the module so we can actually run the script's function"""
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valid | Script.body | get the contents of the script | captain/__init__.py | def body(self):
"""get the contents of the script"""
if not hasattr(self, '_body'):
self._body = inspect.getsource(self.module)
return self._body | def body(self):
"""get the contents of the script"""
if not hasattr(self, '_body'):
self._body = inspect.getsource(self.module)
return self._body | [
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valid | Script.run | parse and import the script, and then run the script's main function | captain/__init__.py | def run(self, raw_args):
"""parse and import the script, and then run the script's main function"""
parser = self.parser
args, kwargs = parser.parse_callback_args(raw_args)
callback = kwargs.pop("main_callback")
if parser.has_injected_quiet():
levels = kwargs.pop("qu... | def run(self, raw_args):
"""parse and import the script, and then run the script's main function"""
parser = self.parser
args, kwargs = parser.parse_callback_args(raw_args)
callback = kwargs.pop("main_callback")
if parser.has_injected_quiet():
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valid | Script.call_path | return that path to be able to call this script from the passed in
basename
example --
basepath = /foo/bar
self.path = /foo/bar/che/baz.py
self.call_path(basepath) # che/baz.py
basepath -- string -- the directory you would be calling this script in
... | captain/__init__.py | def call_path(self, basepath):
"""return that path to be able to call this script from the passed in
basename
example --
basepath = /foo/bar
self.path = /foo/bar/che/baz.py
self.call_path(basepath) # che/baz.py
basepath -- string -- the directory yo... | def call_path(self, basepath):
"""return that path to be able to call this script from the passed in
basename
example --
basepath = /foo/bar
self.path = /foo/bar/che/baz.py
self.call_path(basepath) # che/baz.py
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valid | Script.parse | load the script and set the parser and argument info
I feel that this is way too brittle to be used long term, I think it just
might be best to import the stupid module, the thing I don't like about that
is then we import basically everything, which seems bad? | captain/__init__.py | def parse(self):
"""load the script and set the parser and argument info
I feel that this is way too brittle to be used long term, I think it just
might be best to import the stupid module, the thing I don't like about that
is then we import basically everything, which seems bad?
... | def parse(self):
"""load the script and set the parser and argument info
I feel that this is way too brittle to be used long term, I think it just
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valid | Script.can_run_from_cli | return True if this script can be run from the command line | captain/__init__.py | def can_run_from_cli(self):
"""return True if this script can be run from the command line"""
ret = False
ast_tree = ast.parse(self.body, self.path)
calls = self._find_calls(ast_tree, __name__, "exit")
for call in calls:
if re.search("{}\(".format(re.escape(call)), se... | def can_run_from_cli(self):
"""return True if this script can be run from the command line"""
ret = False
ast_tree = ast.parse(self.body, self.path)
calls = self._find_calls(ast_tree, __name__, "exit")
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valid | register_field | Handles registering the fields with the FieldRegistry and creating a
post-save signal for the model. | oembed/fields.py | def register_field(cls, field):
"""
Handles registering the fields with the FieldRegistry and creating a
post-save signal for the model.
"""
FieldRegistry.add_field(cls, field)
signals.post_save.connect(handle_save_embeds, sender=cls,
dispatch_uid='%s.%s.%s' % \
(cl... | def register_field(cls, field):
"""
Handles registering the fields with the FieldRegistry and creating a
post-save signal for the model.
"""
FieldRegistry.add_field(cls, field)
signals.post_save.connect(handle_save_embeds, sender=cls,
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valid | EmbeddedMediaField.contribute_to_class | I need a way to ensure that this signal gets created for all child
models, and since model inheritance doesn't have a 'contrubite_to_class'
style hook, I am creating a fake virtual field which will be added to
all subclasses and handles creating the signal | oembed/fields.py | def contribute_to_class(self, cls, name):
"""
I need a way to ensure that this signal gets created for all child
models, and since model inheritance doesn't have a 'contrubite_to_class'
style hook, I am creating a fake virtual field which will be added to
all subclasses and handl... | def contribute_to_class(self, cls, name):
"""
I need a way to ensure that this signal gets created for all child
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valid | BaseParser.render_oembed | Render the oembed resource and return as a string.
Template directory will always fall back to 'oembed/[type].html', but
a custom template dir can be passed in using the kwargs.
Templates are given two context variables:
- response: an OEmbedResource
- original_... | oembed/parsers/base.py | def render_oembed(self, oembed_resource, original_url, template_dir=None,
context=None):
"""
Render the oembed resource and return as a string.
Template directory will always fall back to 'oembed/[type].html', but
a custom template dir can be passed in usin... | def render_oembed(self, oembed_resource, original_url, template_dir=None,
context=None):
"""
Render the oembed resource and return as a string.
Template directory will always fall back to 'oembed/[type].html', but
a custom template dir can be passed in usin... | [
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valid | BaseParser.parse | Scans a block of text, replacing anything matching a provider pattern
with an OEmbed html snippet, if possible.
Templates should be stored at oembed/{format}.html, so for example:
oembed/video.html
An optional template_dir can be provided, allowing for
... | oembed/parsers/base.py | def parse(self, text, maxwidth=None, maxheight=None, template_dir=None,
context=None, urlize_all_links=CONSUMER_URLIZE_ALL):
"""
Scans a block of text, replacing anything matching a provider pattern
with an OEmbed html snippet, if possible.
Templates should be stor... | def parse(self, text, maxwidth=None, maxheight=None, template_dir=None,
context=None, urlize_all_links=CONSUMER_URLIZE_ALL):
"""
Scans a block of text, replacing anything matching a provider pattern
with an OEmbed html snippet, if possible.
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valid | size_to_nearest | Generate some dimensions for resizing an object. This function DOES NOT handle
scaling, it simply calculates maximums. These values should then be passed to
the resize() method which will scale it and return the scaled width & height. | oembed/utils.py | def size_to_nearest(width=None, height=None, allowed_sizes=OEMBED_ALLOWED_SIZES,
force_fit=False):
"""
Generate some dimensions for resizing an object. This function DOES NOT handle
scaling, it simply calculates maximums. These values should then be passed to
the resize() method wh... | def size_to_nearest(width=None, height=None, allowed_sizes=OEMBED_ALLOWED_SIZES,
force_fit=False):
"""
Generate some dimensions for resizing an object. This function DOES NOT handle
scaling, it simply calculates maximums. These values should then be passed to
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valid | fetch_url | Fetch response headers and data from a URL, raising a generic exception
for any kind of failure. | oembed/utils.py | def fetch_url(url, method='GET', user_agent='django-oembed', timeout=SOCKET_TIMEOUT):
"""
Fetch response headers and data from a URL, raising a generic exception
for any kind of failure.
"""
sock = httplib2.Http(timeout=timeout)
request_headers = {
'User-Agent': user_agent,
'Acce... | def fetch_url(url, method='GET', user_agent='django-oembed', timeout=SOCKET_TIMEOUT):
"""
Fetch response headers and data from a URL, raising a generic exception
for any kind of failure.
"""
sock = httplib2.Http(timeout=timeout)
request_headers = {
'User-Agent': user_agent,
'Acce... | [
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valid | relative_to_full | Given a url which may or may not be a relative url, convert it to a full
url path given another full url as an example | oembed/utils.py | def relative_to_full(url, example_url):
"""
Given a url which may or may not be a relative url, convert it to a full
url path given another full url as an example
"""
if re.match('https?:\/\/', url):
return url
domain = get_domain(example_url)
if domain:
return '%s%s' % (doma... | def relative_to_full(url, example_url):
"""
Given a url which may or may not be a relative url, convert it to a full
url path given another full url as an example
"""
if re.match('https?:\/\/', url):
return url
domain = get_domain(example_url)
if domain:
return '%s%s' % (doma... | [
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valid | mock_request | Generate a fake request object to allow oEmbeds to use context processors. | oembed/utils.py | def mock_request():
"""
Generate a fake request object to allow oEmbeds to use context processors.
"""
current_site = Site.objects.get_current()
request = HttpRequest()
request.META['SERVER_NAME'] = current_site.domain
return request | def mock_request():
"""
Generate a fake request object to allow oEmbeds to use context processors.
"""
current_site = Site.objects.get_current()
request = HttpRequest()
request.META['SERVER_NAME'] = current_site.domain
return request | [
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valid | load_class | dynamically load a class given a string of the format
package.Class | oembed/utils.py | def load_class(path):
"""
dynamically load a class given a string of the format
package.Class
"""
package, klass = path.rsplit('.', 1)
module = import_module(package)
return getattr(module, klass) | def load_class(path):
"""
dynamically load a class given a string of the format
package.Class
"""
package, klass = path.rsplit('.', 1)
module = import_module(package)
return getattr(module, klass) | [
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] | worldcompany/djangoembed | python | https://github.com/worldcompany/djangoembed/blob/f3f2be283441d91d1f89db780444dc75f7b51902/oembed/utils.py#L124-L132 | [
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valid | cleaned_sites | Create a list of tuples mapping domains from the sites table to their
site name. The domains will be cleaned into regexes that may be
more permissive than the site domain is in the db.
[(domain_regex, domain_name, domain_string), ...] | oembed/utils.py | def cleaned_sites():
"""
Create a list of tuples mapping domains from the sites table to their
site name. The domains will be cleaned into regexes that may be
more permissive than the site domain is in the db.
[(domain_regex, domain_name, domain_string), ...]
"""
mappings = {}
for ... | def cleaned_sites():
"""
Create a list of tuples mapping domains from the sites table to their
site name. The domains will be cleaned into regexes that may be
more permissive than the site domain is in the db.
[(domain_regex, domain_name, domain_string), ...]
"""
mappings = {}
for ... | [
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valid | EDPSciencesPackage.get_record | Gets the Marc xml of the files in xaml_jp directory
:param fileName: the name of the file to parse.
:type fileName: string
:param refextract_callback: callback to be used to extract
unstructured references. It should
return... | harvestingkit/edpsciences_package.py | def get_record(self, fileName, ref_extract_callback=None):
"""
Gets the Marc xml of the files in xaml_jp directory
:param fileName: the name of the file to parse.
:type fileName: string
:param refextract_callback: callback to be used to extract
... | def get_record(self, fileName, ref_extract_callback=None):
"""
Gets the Marc xml of the files in xaml_jp directory
:param fileName: the name of the file to parse.
:type fileName: string
:param refextract_callback: callback to be used to extract
... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/edpsciences_package.py#L156-L266 | [
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valid | EDPSciencesPackage.get_record_rich | Gets the Marc xml of the files in xaml_rich directory
:param fileName: the name of the file to parse.
:type fileName: string
:returns: a string with the marc xml version of the file. | harvestingkit/edpsciences_package.py | def get_record_rich(self, filename, ref_extract_callback=None):
"""
Gets the Marc xml of the files in xaml_rich directory
:param fileName: the name of the file to parse.
:type fileName: string
:returns: a string with the marc xml version of the file.
"""
self.do... | def get_record_rich(self, filename, ref_extract_callback=None):
"""
Gets the Marc xml of the files in xaml_rich directory
:param fileName: the name of the file to parse.
:type fileName: string
:returns: a string with the marc xml version of the file.
"""
self.do... | [
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/edpsciences_package.py#L268-L440 | [
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valid | CDS2Inspire.get_record | Override the base get_record. | harvestingkit/inspire_cds_package/from_cds.py | def get_record(self):
"""Override the base get_record."""
self.update_system_numbers()
self.add_systemnumber("CDS")
self.fields_list = [
"024", "041", "035", "037", "088", "100",
"110", "111", "242", "245", "246", "260",
"269", "300", "502", "650", "65... | def get_record(self):
"""Override the base get_record."""
self.update_system_numbers()
self.add_systemnumber("CDS")
self.fields_list = [
"024", "041", "035", "037", "088", "100",
"110", "111", "242", "245", "246", "260",
"269", "300", "502", "650", "65... | [
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valid | CDS2Inspire.determine_collections | Try to determine which collections this record should belong to. | harvestingkit/inspire_cds_package/from_cds.py | def determine_collections(self):
"""Try to determine which collections this record should belong to."""
for value in record_get_field_values(self.record, '980', code='a'):
if 'NOTE' in value.upper():
self.collections.add('NOTE')
if 'THESIS' in value.upper():
... | def determine_collections(self):
"""Try to determine which collections this record should belong to."""
for value in record_get_field_values(self.record, '980', code='a'):
if 'NOTE' in value.upper():
self.collections.add('NOTE')
if 'THESIS' in value.upper():
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valid | CDS2Inspire.is_published | Check fields 980 and 773 to see if the record has already been published.
:return: True is published, else False | harvestingkit/inspire_cds_package/from_cds.py | def is_published(self):
"""Check fields 980 and 773 to see if the record has already been published.
:return: True is published, else False
"""
field980 = record_get_field_instances(self.record, '980')
field773 = record_get_field_instances(self.record, '773')
for f980 in... | def is_published(self):
"""Check fields 980 and 773 to see if the record has already been published.
:return: True is published, else False
"""
field980 = record_get_field_instances(self.record, '980')
field773 = record_get_field_instances(self.record, '773')
for f980 in... | [
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valid | CDS2Inspire.add_cms_link | Special handling if record is a CMS NOTE. | harvestingkit/inspire_cds_package/from_cds.py | def add_cms_link(self):
"""Special handling if record is a CMS NOTE."""
intnote = record_get_field_values(self.record, '690',
filter_subfield_code="a",
filter_subfield_value='INTNOTE')
if intnote:
val... | def add_cms_link(self):
"""Special handling if record is a CMS NOTE."""
intnote = record_get_field_values(self.record, '690',
filter_subfield_code="a",
filter_subfield_value='INTNOTE')
if intnote:
val... | [
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"'INTNOTE'",
")",
"if",
"intnote",
":",
"val_088",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_system_numbers | 035 Externals. | harvestingkit/inspire_cds_package/from_cds.py | def update_system_numbers(self):
"""035 Externals."""
scn_035_fields = record_get_field_instances(self.record, '035')
forbidden_values = ["cercer",
"inspire",
"xx",
"cern annual report",
... | def update_system_numbers(self):
"""035 Externals."""
scn_035_fields = record_get_field_instances(self.record, '035')
forbidden_values = ["cercer",
"inspire",
"xx",
"cern annual report",
... | [
"035",
"Externals",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L191-L220 | [
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"\"xx\"",
",",
"\"cern annual report\"",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_reportnumbers | Handle reportnumbers. | harvestingkit/inspire_cds_package/from_cds.py | def update_reportnumbers(self):
"""Handle reportnumbers. """
rep_088_fields = record_get_field_instances(self.record, '088')
for field in rep_088_fields:
subs = field_get_subfields(field)
if '9' in subs:
for val in subs['9']:
if val.sta... | def update_reportnumbers(self):
"""Handle reportnumbers. """
rep_088_fields = record_get_field_instances(self.record, '088')
for field in rep_088_fields:
subs = field_get_subfields(field)
if '9' in subs:
for val in subs['9']:
if val.sta... | [
"Handle",
"reportnumbers",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L222-L256 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_date | 269 Date normalization. | harvestingkit/inspire_cds_package/from_cds.py | def update_date(self):
"""269 Date normalization."""
for field in record_get_field_instances(self.record, '269'):
for idx, (key, value) in enumerate(field[0]):
if key == "c":
field[0][idx] = ("c", convert_date_to_iso(value))
record_dele... | def update_date(self):
"""269 Date normalization."""
for field in record_get_field_instances(self.record, '269'):
for idx, (key, value) in enumerate(field[0]):
if key == "c":
field[0][idx] = ("c", convert_date_to_iso(value))
record_dele... | [
"269",
"Date",
"normalization",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L258-L269 | [
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valid | CDS2Inspire.update_pagenumber | 300 page number. | harvestingkit/inspire_cds_package/from_cds.py | def update_pagenumber(self):
"""300 page number."""
for field in record_get_field_instances(self.record, '300'):
for idx, (key, value) in enumerate(field[0]):
if key == 'a':
if "mult." not in value and value != " p":
field[0][idx] =... | def update_pagenumber(self):
"""300 page number."""
for field in record_get_field_instances(self.record, '300'):
for idx, (key, value) in enumerate(field[0]):
if key == 'a':
if "mult." not in value and value != " p":
field[0][idx] =... | [
"300",
"page",
"number",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L271-L281 | [
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"]",... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_authors | 100 & 700 punctuate author names. | harvestingkit/inspire_cds_package/from_cds.py | def update_authors(self):
"""100 & 700 punctuate author names."""
author_names = record_get_field_instances(self.record, '100')
author_names.extend(record_get_field_instances(self.record, '700'))
for field in author_names:
subs = field_get_subfields(field)
if 'i' ... | def update_authors(self):
"""100 & 700 punctuate author names."""
author_names = record_get_field_instances(self.record, '100')
author_names.extend(record_get_field_instances(self.record, '700'))
for field in author_names:
subs = field_get_subfields(field)
if 'i' ... | [
"100",
"&",
"700",
"punctuate",
"author",
"names",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L283-L293 | [
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")",
"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_thesis_supervisors | 700 -> 701 Thesis supervisors. | harvestingkit/inspire_cds_package/from_cds.py | def update_thesis_supervisors(self):
"""700 -> 701 Thesis supervisors."""
for field in record_get_field_instances(self.record, '700'):
record_add_field(self.record, '701', subfields=field[0])
record_delete_fields(self.record, '700') | def update_thesis_supervisors(self):
"""700 -> 701 Thesis supervisors."""
for field in record_get_field_instances(self.record, '700'):
record_add_field(self.record, '701', subfields=field[0])
record_delete_fields(self.record, '700') | [
"700",
"-",
">",
"701",
"Thesis",
"supervisors",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L295-L299 | [
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",",
"'701'",
",",
"subfields",
"=",
"field",
"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_thesis_information | 501 degree info - move subfields. | harvestingkit/inspire_cds_package/from_cds.py | def update_thesis_information(self):
"""501 degree info - move subfields."""
fields_501 = record_get_field_instances(self.record, '502')
for idx, field in enumerate(fields_501):
new_subs = []
for key, value in field[0]:
if key == 'a':
n... | def update_thesis_information(self):
"""501 degree info - move subfields."""
fields_501 = record_get_field_instances(self.record, '502')
for idx, field in enumerate(fields_501):
new_subs = []
for key, value in field[0]:
if key == 'a':
n... | [
"501",
"degree",
"info",
"-",
"move",
"subfields",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L301-L315 | [
"def",
"update_thesis_information",
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"field",
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")",
":",
"new_subs",
"=",
"[",
"]",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_keywords | 653 Free Keywords. | harvestingkit/inspire_cds_package/from_cds.py | def update_keywords(self):
"""653 Free Keywords."""
for field in record_get_field_instances(self.record, '653', ind1='1'):
subs = field_get_subfields(field)
new_subs = []
if 'a' in subs:
for val in subs['a']:
new_subs.extend([('9', ... | def update_keywords(self):
"""653 Free Keywords."""
for field in record_get_field_instances(self.record, '653', ind1='1'):
subs = field_get_subfields(field)
new_subs = []
if 'a' in subs:
for val in subs['a']:
new_subs.extend([('9', ... | [
"653",
"Free",
"Keywords",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L317-L327 | [
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"(",
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"new_subs",
"=",
"[",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_experiments | Experiment mapping. | harvestingkit/inspire_cds_package/from_cds.py | def update_experiments(self):
"""Experiment mapping."""
# 693 Remove if 'not applicable'
for field in record_get_field_instances(self.record, '693'):
subs = field_get_subfields(field)
all_subs = subs.get('a', []) + subs.get('e', [])
if 'not applicable' in [x.l... | def update_experiments(self):
"""Experiment mapping."""
# 693 Remove if 'not applicable'
for field in record_get_field_instances(self.record, '693'):
subs = field_get_subfields(field)
all_subs = subs.get('a', []) + subs.get('e', [])
if 'not applicable' in [x.l... | [
"Experiment",
"mapping",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L329-L354 | [
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"(",
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"=",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_collaboration | 710 Collaboration. | harvestingkit/inspire_cds_package/from_cds.py | def update_collaboration(self):
"""710 Collaboration."""
for field in record_get_field_instances(self.record, '710'):
subs = field_get_subfield_instances(field)
for idx, (key, value) in enumerate(subs[:]):
if key == '5':
subs.pop(idx)
... | def update_collaboration(self):
"""710 Collaboration."""
for field in record_get_field_instances(self.record, '710'):
subs = field_get_subfield_instances(field)
for idx, (key, value) in enumerate(subs[:]):
if key == '5':
subs.pop(idx)
... | [
"710",
"Collaboration",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L356-L368 | [
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"for",
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",",
"(",
"key",
",",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_journals | 773 journal translations. | harvestingkit/inspire_cds_package/from_cds.py | def update_journals(self):
"""773 journal translations."""
for field in record_get_field_instances(self.record, '773'):
subs = field_get_subfield_instances(field)
new_subs = []
for idx, (key, value) in enumerate(subs):
if key == 'p':
... | def update_journals(self):
"""773 journal translations."""
for field in record_get_field_instances(self.record, '773'):
subs = field_get_subfield_instances(field)
new_subs = []
for idx, (key, value) in enumerate(subs):
if key == 'p':
... | [
"773",
"journal",
"translations",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L370-L384 | [
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"new_subs",
"=",
"[",
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"for",
"idx",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | CDS2Inspire.update_links_and_ffts | FFT (856) Dealing with graphs. | harvestingkit/inspire_cds_package/from_cds.py | def update_links_and_ffts(self):
"""FFT (856) Dealing with graphs."""
figure_counter = 0
for field in record_get_field_instances(self.record,
tag='856',
ind1='4'):
subs = field_get_subfiel... | def update_links_and_ffts(self):
"""FFT (856) Dealing with graphs."""
figure_counter = 0
for field in record_get_field_instances(self.record,
tag='856',
ind1='4'):
subs = field_get_subfiel... | [
"FFT",
"(",
"856",
")",
"Dealing",
"with",
"graphs",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/inspire_cds_package/from_cds.py#L386-L500 | [
"def",
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"subs",
"=",
"field_get_subfields"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | SpringerPackage._extract_packages | Extract a package in a new directory. | harvestingkit/springer_package.py | def _extract_packages(self):
"""
Extract a package in a new directory.
"""
self.path_unpacked = []
if not hasattr(self, "retrieved_packages_unpacked"):
self.retrieved_packages_unpacked = [self.package_name]
for path in self.retrieved_packages_unpacked:
... | def _extract_packages(self):
"""
Extract a package in a new directory.
"""
self.path_unpacked = []
if not hasattr(self, "retrieved_packages_unpacked"):
self.retrieved_packages_unpacked = [self.package_name]
for path in self.retrieved_packages_unpacked:
... | [
"Extract",
"a",
"package",
"in",
"a",
"new",
"directory",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/springer_package.py#L208-L232 | [
"def",
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")",
":",
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".",
"retrieved_packages_unpacked",
"=",
"[",
"self",
".",
"package_n... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | SpringerPackage._crawl_springer_and_find_main_xml | A package contains several subdirectory corresponding to each article.
An article is actually identified by the existence of a main.pdf and
a main.xml in a given directory. | harvestingkit/springer_package.py | def _crawl_springer_and_find_main_xml(self):
"""
A package contains several subdirectory corresponding to each article.
An article is actually identified by the existence of a main.pdf and
a main.xml in a given directory.
"""
self.found_articles = []
def visit(ar... | def _crawl_springer_and_find_main_xml(self):
"""
A package contains several subdirectory corresponding to each article.
An article is actually identified by the existence of a main.pdf and
a main.xml in a given directory.
"""
self.found_articles = []
def visit(ar... | [
"A",
"package",
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"subdirectory",
"corresponding",
"to",
"each",
"article",
".",
"An",
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"and",
"a",
"main",
".",
"xml",
"in",
"a",
"give... | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/springer_package.py#L234-L261 | [
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"names",
"if",
"\... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | SpringerPackage._normalize_article_dir_with_dtd | TODO: main.xml from Springer assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references. | harvestingkit/springer_package.py | def _normalize_article_dir_with_dtd(self, path):
"""
TODO: main.xml from Springer assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
f... | def _normalize_article_dir_with_dtd(self, path):
"""
TODO: main.xml from Springer assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
f... | [
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"xmllint... | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/springer_package.py#L263-L303 | [
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"[",
"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | add_all_filters | Add (register) all filters to Pelican. | minchin/pelican/jinja_filters/__init__.py | def add_all_filters(pelican):
"""Add (register) all filters to Pelican."""
pelican.env.filters.update({'datetime': filters.datetime})
pelican.env.filters.update({'article_date': filters.article_date})
pelican.env.filters.update({'breaking_spaces': filters.breaking_spaces})
pelican.env.filters.update... | def add_all_filters(pelican):
"""Add (register) all filters to Pelican."""
pelican.env.filters.update({'datetime': filters.datetime})
pelican.env.filters.update({'article_date': filters.article_date})
pelican.env.filters.update({'breaking_spaces': filters.breaking_spaces})
pelican.env.filters.update... | [
"Add",
"(",
"register",
")",
"all",
"filters",
"to",
"Pelican",
"."
] | MinchinWeb/minchin.pelican.jinja_filters | python | https://github.com/MinchinWeb/minchin.pelican.jinja_filters/blob/94b8b1dd04be49950d660fe11d28f0df0fe49664/minchin/pelican/jinja_filters/__init__.py#L50-L55 | [
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"'article_date'",... | 94b8b1dd04be49950d660fe11d28f0df0fe49664 |
valid | create_field | Return a field created with the provided elements.
Global position is set arbitrary to -1. | harvestingkit/bibrecord.py | def create_field(subfields=None, ind1=' ', ind2=' ', controlfield_value='',
global_position=-1):
"""
Return a field created with the provided elements.
Global position is set arbitrary to -1.
"""
if subfields is None:
subfields = []
ind1, ind2 = _wash_indicators(ind1, ... | def create_field(subfields=None, ind1=' ', ind2=' ', controlfield_value='',
global_position=-1):
"""
Return a field created with the provided elements.
Global position is set arbitrary to -1.
"""
if subfields is None:
subfields = []
ind1, ind2 = _wash_indicators(ind1, ... | [
"Return",
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"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L193-L206 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | create_records | Create a list of records from the marcxml description.
:returns: a list of objects initiated by the function create_record().
Please see that function's docstring. | harvestingkit/bibrecord.py | def create_records(marcxml, verbose=CFG_BIBRECORD_DEFAULT_VERBOSE_LEVEL,
correct=CFG_BIBRECORD_DEFAULT_CORRECT, parser='',
keep_singletons=CFG_BIBRECORD_KEEP_SINGLETONS):
"""
Create a list of records from the marcxml description.
:returns: a list of objects initiated b... | def create_records(marcxml, verbose=CFG_BIBRECORD_DEFAULT_VERBOSE_LEVEL,
correct=CFG_BIBRECORD_DEFAULT_CORRECT, parser='',
keep_singletons=CFG_BIBRECORD_KEEP_SINGLETONS):
"""
Create a list of records from the marcxml description.
:returns: a list of objects initiated b... | [
"Create",
"a",
"list",
"of",
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"from",
"the",
"marcxml",
"description",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L209-L224 | [
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")",
":",
"# Use the DOTALL f... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | create_record | Create a record object from the marcxml description.
Uses the lxml parser.
The returned object is a tuple (record, status_code, list_of_errors),
where status_code is 0 when there are errors, 1 when no errors.
The return record structure is as follows::
Record := {tag : [Field]}
Field... | harvestingkit/bibrecord.py | def create_record(marcxml=None, verbose=CFG_BIBRECORD_DEFAULT_VERBOSE_LEVEL,
correct=CFG_BIBRECORD_DEFAULT_CORRECT, parser='',
sort_fields_by_indicators=False,
keep_singletons=CFG_BIBRECORD_KEEP_SINGLETONS):
"""Create a record object from the marcxml description... | def create_record(marcxml=None, verbose=CFG_BIBRECORD_DEFAULT_VERBOSE_LEVEL,
correct=CFG_BIBRECORD_DEFAULT_CORRECT, parser='',
sort_fields_by_indicators=False,
keep_singletons=CFG_BIBRECORD_KEEP_SINGLETONS):
"""Create a record object from the marcxml description... | [
"Create",
"a",
"record",
"object",
"from",
"the",
"marcxml",
"description",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L227-L297 | [
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"=",
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"="... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | filter_field_instances | Filter the given field.
Filters given field and returns only that field instances that contain
filter_subcode with given filter_value. As an input for search function
accepts output from record_get_field_instances function. Function can be
run in three modes:
- 'e' - looking for exact match in sub... | harvestingkit/bibrecord.py | def filter_field_instances(field_instances, filter_subcode, filter_value,
filter_mode='e'):
"""Filter the given field.
Filters given field and returns only that field instances that contain
filter_subcode with given filter_value. As an input for search function
accepts output... | def filter_field_instances(field_instances, filter_subcode, filter_value,
filter_mode='e'):
"""Filter the given field.
Filters given field and returns only that field instances that contain
filter_subcode with given filter_value. As an input for search function
accepts output... | [
"Filter",
"the",
"given",
"field",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L300-L348 | [
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"filter... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_drop_duplicate_fields | Return a record where all the duplicate fields have been removed.
Fields are considered identical considering also the order of their
subfields. | harvestingkit/bibrecord.py | def record_drop_duplicate_fields(record):
"""
Return a record where all the duplicate fields have been removed.
Fields are considered identical considering also the order of their
subfields.
"""
out = {}
position = 0
tags = sorted(record.keys())
for tag in tags:
fields = rec... | def record_drop_duplicate_fields(record):
"""
Return a record where all the duplicate fields have been removed.
Fields are considered identical considering also the order of their
subfields.
"""
out = {}
position = 0
tags = sorted(record.keys())
for tag in tags:
fields = rec... | [
"Return",
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"record",
"where",
"all",
"the",
"duplicate",
"fields",
"have",
"been",
"removed",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L351-L371 | [
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"]",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | records_identical | Return True if rec1 is identical to rec2.
It does so regardless of a difference in the 005 tag (i.e. the timestamp). | harvestingkit/bibrecord.py | def records_identical(rec1, rec2, skip_005=True, ignore_field_order=False,
ignore_subfield_order=False,
ignore_duplicate_subfields=False,
ignore_duplicate_controlfields=False):
"""
Return True if rec1 is identical to rec2.
It does so regardl... | def records_identical(rec1, rec2, skip_005=True, ignore_field_order=False,
ignore_subfield_order=False,
ignore_duplicate_subfields=False,
ignore_duplicate_controlfields=False):
"""
Return True if rec1 is identical to rec2.
It does so regardl... | [
"Return",
"True",
"if",
"rec1",
"is",
"identical",
"to",
"rec2",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L374-L430 | [
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"=",
"False",
",",
"ignore_duplicate_controlfields",
"=",
"Fal... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_get_field_instances | Return the list of field instances for the specified tag and indications.
Return empty list if not found.
If tag is empty string, returns all fields
Parameters (tag, ind1, ind2) can contain wildcard %.
:param rec: a record structure as returned by create_record()
:param tag: a 3 characters long s... | harvestingkit/bibrecord.py | def record_get_field_instances(rec, tag="", ind1=" ", ind2=" "):
"""
Return the list of field instances for the specified tag and indications.
Return empty list if not found.
If tag is empty string, returns all fields
Parameters (tag, ind1, ind2) can contain wildcard %.
:param rec: a record s... | def record_get_field_instances(rec, tag="", ind1=" ", ind2=" "):
"""
Return the list of field instances for the specified tag and indications.
Return empty list if not found.
If tag is empty string, returns all fields
Parameters (tag, ind1, ind2) can contain wildcard %.
:param rec: a record s... | [
"Return",
"the",
"list",
"of",
"field",
"instances",
"for",
"the",
"specified",
"tag",
"and",
"indications",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L433-L472 | [
"def",
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"return",
"rec",
".",
"items",
"(",
")",... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_add_field | Add a new field into the record.
If field_position_global or field_position_local is specified then
this method will insert the new field at the desired position.
Otherwise a global field position will be computed in order to
insert the field at the best position (first we try to keep the
order of ... | harvestingkit/bibrecord.py | def record_add_field(rec, tag, ind1=' ', ind2=' ', controlfield_value='',
subfields=None, field_position_global=None,
field_position_local=None):
"""
Add a new field into the record.
If field_position_global or field_position_local is specified then
this method... | def record_add_field(rec, tag, ind1=' ', ind2=' ', controlfield_value='',
subfields=None, field_position_global=None,
field_position_local=None):
"""
Add a new field into the record.
If field_position_global or field_position_local is specified then
this method... | [
"Add",
"a",
"new",
"field",
"into",
"the",
"record",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L475-L610 | [
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"=",
"None",
",",
"field_position_local",
"=",
"None",
"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_delete_field | Delete the field with the given position.
If global field position is specified, deletes the field with the
corresponding global field position.
If field_position_local is specified, deletes the field with the
corresponding local field position and tag.
Else deletes all the fields matching tag and ... | harvestingkit/bibrecord.py | def record_delete_field(rec, tag, ind1=' ', ind2=' ',
field_position_global=None, field_position_local=None):
"""
Delete the field with the given position.
If global field position is specified, deletes the field with the
corresponding global field position.
If field_positio... | def record_delete_field(rec, tag, ind1=' ', ind2=' ',
field_position_global=None, field_position_local=None):
"""
Delete the field with the given position.
If global field position is specified, deletes the field with the
corresponding global field position.
If field_positio... | [
"Delete",
"the",
"field",
"with",
"the",
"given",
"position",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L624-L688 | [
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"error",
"=",
"_validate_record_field_positions_global",
"(",
... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_delete_fields | Delete all/some fields defined with MARC tag 'tag' from record 'rec'.
:param rec: a record structure.
:type rec: tuple
:param tag: three letter field.
:type tag: string
:param field_position_local: if set, it is the list of local positions
within all the fields with the specified tag, that ... | harvestingkit/bibrecord.py | def record_delete_fields(rec, tag, field_positions_local=None):
"""
Delete all/some fields defined with MARC tag 'tag' from record 'rec'.
:param rec: a record structure.
:type rec: tuple
:param tag: three letter field.
:type tag: string
:param field_position_local: if set, it is the list of... | def record_delete_fields(rec, tag, field_positions_local=None):
"""
Delete all/some fields defined with MARC tag 'tag' from record 'rec'.
:param rec: a record structure.
:type rec: tuple
:param tag: three letter field.
:type tag: string
:param field_position_local: if set, it is the list of... | [
"Delete",
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"MARC",
"tag",
"tag",
"from",
"record",
"rec",
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] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L691-L723 | [
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... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
valid | record_add_fields | Add the fields into the record at the required position.
The position is specified by the tag and the field_position_local in the
list of fields.
:param rec: a record structure
:param tag: the tag of the fields to be moved
:param field_position_local: the field_position_local to which the field
... | harvestingkit/bibrecord.py | def record_add_fields(rec, tag, fields, field_position_local=None,
field_position_global=None):
"""
Add the fields into the record at the required position.
The position is specified by the tag and the field_position_local in the
list of fields.
:param rec: a record structure... | def record_add_fields(rec, tag, fields, field_position_local=None,
field_position_global=None):
"""
Add the fields into the record at the required position.
The position is specified by the tag and the field_position_local in the
list of fields.
:param rec: a record structure... | [
"Add",
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"record",
"at",
"the",
"required",
"position",
"."
] | inspirehep/harvesting-kit | python | https://github.com/inspirehep/harvesting-kit/blob/33a7f8aa9dade1d863110c6d8b27dfd955cb471f/harvestingkit/bibrecord.py#L726-L758 | [
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"for"... | 33a7f8aa9dade1d863110c6d8b27dfd955cb471f |
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