INSTRUCTION stringlengths 1 46.3k | RESPONSE stringlengths 75 80.2k |
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Fixed `mode` `padding` and random crop of `size` | def rand_pad(padding:int, size:int, mode:str='reflection'):
"Fixed `mode` `padding` and random crop of `size`"
return [pad(padding=padding,mode=mode),
crop(size=size, **rand_pos)] |
Randomized version of `zoom`. | def rand_zoom(scale:uniform=1.0, p:float=1.):
"Randomized version of `zoom`."
return zoom(scale=scale, **rand_pos, p=p) |
Randomized version of `crop_pad`. | def rand_crop(*args, padding_mode='reflection', p:float=1.):
"Randomized version of `crop_pad`."
return crop_pad(*args, **rand_pos, padding_mode=padding_mode, p=p) |
Randomly zoom and/or crop. | def zoom_crop(scale:float, do_rand:bool=False, p:float=1.0):
"Randomly zoom and/or crop."
zoom_fn = rand_zoom if do_rand else zoom
crop_fn = rand_crop if do_rand else crop_pad
return [zoom_fn(scale=scale, p=p), crop_fn()] |
Find 8 coeff mentioned [here](https://web.archive.org/web/20150222120106/xenia.media.mit.edu/~cwren/interpolator/). | def _find_coeffs(orig_pts:Points, targ_pts:Points)->Tensor:
"Find 8 coeff mentioned [here](https://web.archive.org/web/20150222120106/xenia.media.mit.edu/~cwren/interpolator/)."
matrix = []
#The equations we'll need to solve.
for p1, p2 in zip(targ_pts, orig_pts):
matrix.append([p1[0], p1[1], 1,... |
Transform `coords` with `coeffs`. | def _apply_perspective(coords:FlowField, coeffs:Points)->FlowField:
"Transform `coords` with `coeffs`."
size = coords.flow.size()
#compress all the dims expect the last one ang adds ones, coords become N * 3
coords.flow = coords.flow.view(-1,2)
#Transform the coeffs in a 3*3 matrix with a 1 at the b... |
Apply warp to `targ_pts` from `_orig_pts` to `c` `FlowField`. | def _do_perspective_warp(c:FlowField, targ_pts:Points, invert=False):
"Apply warp to `targ_pts` from `_orig_pts` to `c` `FlowField`."
if invert: return _apply_perspective(c, _find_coeffs(targ_pts, _orig_pts))
return _apply_perspective(c, _find_coeffs(_orig_pts, targ_pts)) |
Apply warp of `magnitude` to `c`. | def _perspective_warp(c, magnitude:partial(uniform,size=8)=0, invert=False):
"Apply warp of `magnitude` to `c`."
magnitude = magnitude.view(4,2)
targ_pts = [[x+m for x,m in zip(xs, ms)] for xs, ms in zip(_orig_pts, magnitude)]
return _do_perspective_warp(c, targ_pts, invert) |
Apply symmetric warp of `magnitude` to `c`. | def _symmetric_warp(c, magnitude:partial(uniform,size=4)=0, invert=False):
"Apply symmetric warp of `magnitude` to `c`."
m = listify(magnitude, 4)
targ_pts = [[-1-m[3],-1-m[1]], [-1-m[2],1+m[1]], [1+m[3],-1-m[0]], [1+m[2],1+m[0]]]
return _do_perspective_warp(c, targ_pts, invert) |
Tilt `c` field with random `direction` and `magnitude`. | def _tilt(c, direction:uniform_int, magnitude:uniform=0, invert=False):
"Tilt `c` field with random `direction` and `magnitude`."
orig_pts = [[-1,-1], [-1,1], [1,-1], [1,1]]
if direction == 0: targ_pts = [[-1,-1], [-1,1], [1,-1-magnitude], [1,1+magnitude]]
elif direction == 1: targ_pts = [[-1,-1-magni... |
Utility func to easily create a list of flip, rotate, `zoom`, warp, lighting transforms. | def get_transforms(do_flip:bool=True, flip_vert:bool=False, max_rotate:float=10., max_zoom:float=1.1,
max_lighting:float=0.2, max_warp:float=0.2, p_affine:float=0.75,
p_lighting:float=0.75, xtra_tfms:Optional[Collection[Transform]]=None)->Collection[Transform]:
"Utility func to... |
Utility routine to compute zoom/squish matrix. | def _compute_zs_mat(sz:TensorImageSize, scale:float, squish:float,
invert:bool, row_pct:float, col_pct:float)->AffineMatrix:
"Utility routine to compute zoom/squish matrix."
orig_ratio = math.sqrt(sz[1]/sz[0])
for s,r,i in zip(scale,squish, invert):
s,r = 1/math.sqrt(s),math.sqrt(... |
Randomly resize and crop the image to a ratio in `ratios` after a zoom of `max_scale`. | def rand_resize_crop(size:int, max_scale:float=2., ratios:Tuple[float,float]=(0.75,1.33)):
"Randomly resize and crop the image to a ratio in `ratios` after a zoom of `max_scale`."
return [zoom_squish(scale=(1.,max_scale,8), squish=(*ratios,8), invert=(0.5,8), row_pct=(0.,1.), col_pct=(0.,1.)),
crop(... |
Sets the learning rate to the initial LR decayed by 10 every 30 epochs | def adjust_learning_rate(optimizer, epoch, gammas, schedule):
"""Sets the learning rate to the initial LR decayed by 10 every 30 epochs"""
lr = args.learning_rate
assert len(gammas) == len(schedule), "length of gammas and schedule should be equal"
for (gamma, step) in zip(gammas, schedule):
if (epoch >= ste... |
Method does some preparation before finally delegating to the 'fit' method for
fitting the model. Namely, if cycle_len is defined, it adds a 'Cosine Annealing'
scheduler for varying the learning rate across iterations.
Method also computes the total number of epochs to fit based on provided 'cy... | def fit_gen(self, model, data, layer_opt, n_cycle, cycle_len=None, cycle_mult=1, cycle_save_name=None, best_save_name=None,
use_clr=None, use_clr_beta=None, metrics=None, callbacks=None, use_wd_sched=False, norm_wds=False,
wds_sched_mult=None, use_swa=False, swa_start=1, swa... |
Method returns an instance of the LayerOptimizer class, which
allows for setting differential learning rates for different
parts of the model.
An example of how a model maybe differentiated into different parts
for application of differential learning rates and weight decays is
... | def get_layer_opt(self, lrs, wds):
"""Method returns an instance of the LayerOptimizer class, which
allows for setting differential learning rates for different
parts of the model.
An example of how a model maybe differentiated into different parts
for application of differenti... |
Method gets an instance of LayerOptimizer and delegates to self.fit_gen(..)
Note that one can specify a list of learning rates which, when appropriately
defined, will be applied to different segments of an architecture. This seems
mostly relevant to ImageNet-trained models, where we want to alt... | def fit(self, lrs, n_cycle, wds=None, **kwargs):
"""Method gets an instance of LayerOptimizer and delegates to self.fit_gen(..)
Note that one can specify a list of learning rates which, when appropriately
defined, will be applied to different segments of an architecture. This seems
mos... |
Helps you find an optimal learning rate for a model.
It uses the technique developed in the 2015 paper
`Cyclical Learning Rates for Training Neural Networks`, where
we simply keep increasing the learning rate from a very small value,
until the loss starts decreasing.
Args:
... | def lr_find(self, start_lr=1e-5, end_lr=10, wds=None, linear=False, **kwargs):
"""Helps you find an optimal learning rate for a model.
It uses the technique developed in the 2015 paper
`Cyclical Learning Rates for Training Neural Networks`, where
we simply keep increasing the learnin... |
A variant of lr_find() that helps find the best learning rate. It doesn't do
an epoch but a fixed num of iterations (which may be more or less than an epoch
depending on your data).
At each step, it computes the validation loss and the metrics on the next
batch of the validation data, so... | def lr_find2(self, start_lr=1e-5, end_lr=10, num_it = 100, wds=None, linear=False, stop_dv=True, **kwargs):
"""A variant of lr_find() that helps find the best learning rate. It doesn't do
an epoch but a fixed num of iterations (which may be more or less than an epoch
depending on your data).
... |
Args:
arr: a numpy array to be used as input to the model for prediction purposes
Returns:
a numpy array containing the predictions from the model | def predict_array(self, arr):
"""
Args:
arr: a numpy array to be used as input to the model for prediction purposes
Returns:
a numpy array containing the predictions from the model
"""
if not isinstance(arr, np.ndarray): raise OSError(f'Not valid numpy arr... |
Predict with Test Time Augmentation (TTA)
Additional to the original test/validation images, apply image augmentation to them
(just like for training images) and calculate the mean of predictions. The intent
is to increase the accuracy of predictions by examining the images using multiple
... | def TTA(self, n_aug=4, is_test=False):
""" Predict with Test Time Augmentation (TTA)
Additional to the original test/validation images, apply image augmentation to them
(just like for training images) and calculate the mean of predictions. The intent
is to increase the accuracy of predi... |
Wraps us the content of phases to send them to model.fit(..)
This will split the training in several parts, each with their own learning rates/
wds/momentums/optimizer detailed in phases.
Additionaly we can add a list of different data objets in data_list to train
on different datasets... | def fit_opt_sched(self, phases, cycle_save_name=None, best_save_name=None, stop_div=False, data_list=None, callbacks=None,
cut = None, use_swa=False, swa_start=1, swa_eval_freq=5, **kwargs):
"""Wraps us the content of phases to send them to model.fit(..)
This will split the train... |
Save the extra outputs for later and only returns the true output. | def on_loss_begin(self, last_output:Tuple[Tensor,Tensor,Tensor], **kwargs):
"Save the extra outputs for later and only returns the true output."
self.raw_out,self.out = last_output[1],last_output[2]
return {'last_output': last_output[0]} |
Apply AR and TAR to `last_loss`. | def on_backward_begin(self, last_loss:Rank0Tensor, last_input:Tensor, **kwargs):
"Apply AR and TAR to `last_loss`."
#AR and TAR
if self.alpha != 0.: last_loss += self.alpha * self.out[-1].float().pow(2).mean()
if self.beta != 0.:
h = self.raw_out[-1]
if len(h)>1:... |
Convert the model `wgts` to go with a new vocabulary. | def convert_weights(wgts:Weights, stoi_wgts:Dict[str,int], itos_new:Collection[str]) -> Weights:
"Convert the model `wgts` to go with a new vocabulary."
dec_bias, enc_wgts = wgts.get('1.decoder.bias', None), wgts['0.encoder.weight']
wgts_m = enc_wgts.mean(0)
if dec_bias is not None: bias_m = dec_bias.me... |
Create a language model from `arch` and its `config`, maybe `pretrained`. | def get_language_model(arch:Callable, vocab_sz:int, config:dict=None, drop_mult:float=1.):
"Create a language model from `arch` and its `config`, maybe `pretrained`."
meta = _model_meta[arch]
config = ifnone(config, meta['config_lm'].copy())
for k in config.keys():
if k.endswith('_p'): config[k... |
Create a `Learner` with a language model from `data` and `arch`. | def language_model_learner(data:DataBunch, arch, config:dict=None, drop_mult:float=1., pretrained:bool=True,
pretrained_fnames:OptStrTuple=None, **learn_kwargs) -> 'LanguageLearner':
"Create a `Learner` with a language model from `data` and `arch`."
model = get_language_model(arch, le... |
Create a text classifier from `arch` and its `config`, maybe `pretrained`. | def get_text_classifier(arch:Callable, vocab_sz:int, n_class:int, bptt:int=70, max_len:int=20*70, config:dict=None,
drop_mult:float=1., lin_ftrs:Collection[int]=None, ps:Collection[float]=None,
pad_idx:int=1) -> nn.Module:
"Create a text classifier from `arch` and it... |
Create a `Learner` with a text classifier from `data` and `arch`. | def text_classifier_learner(data:DataBunch, arch:Callable, bptt:int=70, max_len:int=70*20, config:dict=None,
pretrained:bool=True, drop_mult:float=1., lin_ftrs:Collection[int]=None,
ps:Collection[float]=None, **learn_kwargs) -> 'TextClassifierLearner':
"Crea... |
Save the encoder to `name` inside the model directory. | def save_encoder(self, name:str):
"Save the encoder to `name` inside the model directory."
encoder = get_model(self.model)[0]
if hasattr(encoder, 'module'): encoder = encoder.module
torch.save(encoder.state_dict(), self.path/self.model_dir/f'{name}.pth') |
Load the encoder `name` from the model directory. | def load_encoder(self, name:str, device:torch.device=None):
"Load the encoder `name` from the model directory."
encoder = get_model(self.model)[0]
if device is None: device = self.data.device
if hasattr(encoder, 'module'): encoder = encoder.module
encoder.load_state_dict(torch.lo... |
Load a pretrained model and adapts it to the data vocabulary. | def load_pretrained(self, wgts_fname:str, itos_fname:str, strict:bool=True):
"Load a pretrained model and adapts it to the data vocabulary."
old_itos = pickle.load(open(itos_fname, 'rb'))
old_stoi = {v:k for k,v in enumerate(old_itos)}
wgts = torch.load(wgts_fname, map_location=lambda st... |
Return predictions and targets on the valid, train, or test set, depending on `ds_type`. | def get_preds(self, ds_type:DatasetType=DatasetType.Valid, with_loss:bool=False, n_batch:Optional[int]=None, pbar:Optional[PBar]=None,
ordered:bool=False) -> List[Tensor]:
"Return predictions and targets on the valid, train, or test set, depending on `ds_type`."
self.model.reset()
... |
Return the `n_words` that come after `text`. | def predict(self, text:str, n_words:int=1, no_unk:bool=True, temperature:float=1., min_p:float=None, sep:str=' ',
decoder=decode_spec_tokens):
"Return the `n_words` that come after `text`."
ds = self.data.single_dl.dataset
self.model.reset()
xb,yb = self.data.one_item(tex... |
Return the `n_words` that come after `text` using beam search. | def beam_search(self, text:str, n_words:int, no_unk:bool=True, top_k:int=10, beam_sz:int=1000, temperature:float=1.,
sep:str=' ', decoder=decode_spec_tokens):
"Return the `n_words` that come after `text` using beam search."
ds = self.data.single_dl.dataset
self.model.reset()
... |
Show `rows` result of predictions on `ds_type` dataset. | def show_results(self, ds_type=DatasetType.Valid, rows:int=5, max_len:int=20):
from IPython.display import display, HTML
"Show `rows` result of predictions on `ds_type` dataset."
ds = self.dl(ds_type).dataset
x,y = self.data.one_batch(ds_type, detach=False, denorm=False)
preds = ... |
Concatenate the `arrs` along the batch dimension. | def concat(self, arrs:Collection[Tensor])->Tensor:
"Concatenate the `arrs` along the batch dimension."
return [torch.cat([l[si] for l in arrs], dim=1) for si in range_of(arrs[0])] |
A batchnorm2d layer with `nf` features initialized depending on `norm_type`. | def batchnorm_2d(nf:int, norm_type:NormType=NormType.Batch):
"A batchnorm2d layer with `nf` features initialized depending on `norm_type`."
bn = nn.BatchNorm2d(nf)
with torch.no_grad():
bn.bias.fill_(1e-3)
bn.weight.fill_(0. if norm_type==NormType.BatchZero else 1.)
return bn |
Sequence of batchnorm (if `bn`), dropout (with `p`) and linear (`n_in`,`n_out`) layers followed by `actn`. | def bn_drop_lin(n_in:int, n_out:int, bn:bool=True, p:float=0., actn:Optional[nn.Module]=None):
"Sequence of batchnorm (if `bn`), dropout (with `p`) and linear (`n_in`,`n_out`) layers followed by `actn`."
layers = [nn.BatchNorm1d(n_in)] if bn else []
if p != 0: layers.append(nn.Dropout(p))
layers.append(... |
Create and initialize a `nn.Conv1d` layer with spectral normalization. | def conv1d(ni:int, no:int, ks:int=1, stride:int=1, padding:int=0, bias:bool=False):
"Create and initialize a `nn.Conv1d` layer with spectral normalization."
conv = nn.Conv1d(ni, no, ks, stride=stride, padding=padding, bias=bias)
nn.init.kaiming_normal_(conv.weight)
if bias: conv.bias.data.zero_()
re... |
Create and initialize `nn.Conv2d` layer. `padding` defaults to `ks//2`. | def conv2d(ni:int, nf:int, ks:int=3, stride:int=1, padding:int=None, bias=False, init:LayerFunc=nn.init.kaiming_normal_) -> nn.Conv2d:
"Create and initialize `nn.Conv2d` layer. `padding` defaults to `ks//2`."
if padding is None: padding = ks//2
return init_default(nn.Conv2d(ni, nf, kernel_size=ks, stride=st... |
Create `nn.ConvTranspose2d` layer. | def conv2d_trans(ni:int, nf:int, ks:int=2, stride:int=2, padding:int=0, bias=False) -> nn.ConvTranspose2d:
"Create `nn.ConvTranspose2d` layer."
return nn.ConvTranspose2d(ni, nf, kernel_size=ks, stride=stride, padding=padding, bias=bias) |
Return a relu activation, maybe `leaky` and `inplace`. | def relu(inplace:bool=False, leaky:float=None):
"Return a relu activation, maybe `leaky` and `inplace`."
return nn.LeakyReLU(inplace=inplace, negative_slope=leaky) if leaky is not None else nn.ReLU(inplace=inplace) |
Create a sequence of convolutional (`ni` to `nf`), ReLU (if `use_activ`) and batchnorm (if `bn`) layers. | def conv_layer(ni:int, nf:int, ks:int=3, stride:int=1, padding:int=None, bias:bool=None, is_1d:bool=False,
norm_type:Optional[NormType]=NormType.Batch, use_activ:bool=True, leaky:float=None,
transpose:bool=False, init:Callable=nn.init.kaiming_normal_, self_attention:bool=False):
"Crea... |
Resnet block of `nf` features. `conv_kwargs` are passed to `conv_layer`. | def res_block(nf, dense:bool=False, norm_type:Optional[NormType]=NormType.Batch, bottle:bool=False, **conv_kwargs):
"Resnet block of `nf` features. `conv_kwargs` are passed to `conv_layer`."
norm2 = norm_type
if not dense and (norm_type==NormType.Batch): norm2 = NormType.BatchZero
nf_inner = nf//2 if bo... |
Sigmoid function with range `(low, high)` | def sigmoid_range(x, low, high):
"Sigmoid function with range `(low, high)`"
return torch.sigmoid(x) * (high - low) + low |
ICNR init of `x`, with `scale` and `init` function. | def icnr(x, scale=2, init=nn.init.kaiming_normal_):
"ICNR init of `x`, with `scale` and `init` function."
ni,nf,h,w = x.shape
ni2 = int(ni/(scale**2))
k = init(torch.zeros([ni2,nf,h,w])).transpose(0, 1)
k = k.contiguous().view(ni2, nf, -1)
k = k.repeat(1, 1, scale**2)
k = k.contiguous().view... |
Same as `nn.CrossEntropyLoss`, but flattens input and target. | def CrossEntropyFlat(*args, axis:int=-1, **kwargs):
"Same as `nn.CrossEntropyLoss`, but flattens input and target."
return FlattenedLoss(nn.CrossEntropyLoss, *args, axis=axis, **kwargs) |
Same as `nn.BCEWithLogitsLoss`, but flattens input and target. | def BCEWithLogitsFlat(*args, axis:int=-1, floatify:bool=True, **kwargs):
"Same as `nn.BCEWithLogitsLoss`, but flattens input and target."
return FlattenedLoss(nn.BCEWithLogitsLoss, *args, axis=axis, floatify=floatify, is_2d=False, **kwargs) |
Same as `nn.BCELoss`, but flattens input and target. | def BCEFlat(*args, axis:int=-1, floatify:bool=True, **kwargs):
"Same as `nn.BCELoss`, but flattens input and target."
return FlattenedLoss(nn.BCELoss, *args, axis=axis, floatify=floatify, is_2d=False, **kwargs) |
Same as `nn.MSELoss`, but flattens input and target. | def MSELossFlat(*args, axis:int=-1, floatify:bool=True, **kwargs):
"Same as `nn.MSELoss`, but flattens input and target."
return FlattenedLoss(nn.MSELoss, *args, axis=axis, floatify=floatify, is_2d=False, **kwargs) |
CNN with `conv_layer` defined by `actns`, `kernel_szs` and `strides`, plus batchnorm if `bn`. | def simple_cnn(actns:Collection[int], kernel_szs:Collection[int]=None,
strides:Collection[int]=None, bn=False) -> nn.Sequential:
"CNN with `conv_layer` defined by `actns`, `kernel_szs` and `strides`, plus batchnorm if `bn`."
nl = len(actns)-1
kernel_szs = ifnone(kernel_szs, [3]*nl)
stride... |
Truncated normal initialization. | def trunc_normal_(x:Tensor, mean:float=0., std:float=1.) -> Tensor:
"Truncated normal initialization."
# From https://discuss.pytorch.org/t/implementing-truncated-normal-initializer/4778/12
return x.normal_().fmod_(2).mul_(std).add_(mean) |
Create an embedding layer. | def embedding(ni:int,nf:int) -> nn.Module:
"Create an embedding layer."
emb = nn.Embedding(ni, nf)
# See https://arxiv.org/abs/1711.09160
with torch.no_grad(): trunc_normal_(emb.weight, std=0.01)
return emb |
Prepare MLflow experiment and log params | def on_train_begin(self, **kwargs: Any) -> None:
"Prepare MLflow experiment and log params"
self.client = mlflow.tracking.MlflowClient(self.uri)
exp = self.client.get_experiment_by_name(self.exp_name)
self.exp_id = self.client.create_experiment(self.exp_name) if exp is None else exp.expe... |
Send loss and metrics values to MLFlow after each epoch | def on_epoch_end(self, epoch, **kwargs:Any)->None:
"Send loss and metrics values to MLFlow after each epoch"
if kwargs['smooth_loss'] is None or kwargs["last_metrics"] is None: return
metrics = [kwargs['smooth_loss']] + kwargs["last_metrics"]
for name, val in zip(self.metrics_names, metr... |
Store the notebook and stop run | def on_train_end(self, **kwargs: Any) -> None:
"Store the notebook and stop run"
self.client.log_artifact(run_id=self.run, local_path=self.nb_path)
self.client.set_terminated(run_id=self.run) |
Convert PIL style `image` array to torch style image tensor. | def pil2tensor(image:Union[NPImage,NPArray],dtype:np.dtype)->TensorImage:
"Convert PIL style `image` array to torch style image tensor."
a = np.asarray(image)
if a.ndim==2 : a = np.expand_dims(a,2)
a = np.transpose(a, (1, 0, 2))
a = np.transpose(a, (2, 1, 0))
return torch.from_numpy(a.astype(dty... |
Convert from torch style `image` to numpy/matplotlib style. | def image2np(image:Tensor)->np.ndarray:
"Convert from torch style `image` to numpy/matplotlib style."
res = image.cpu().permute(1,2,0).numpy()
return res[...,0] if res.shape[2]==1 else res |
Convert bounding box points from (width,height,center) to (height,width,top,left). | def bb2hw(a:Collection[int])->np.ndarray:
"Convert bounding box points from (width,height,center) to (height,width,top,left)."
return np.array([a[1],a[0],a[3]-a[1],a[2]-a[0]]) |
Convert `int` or `TensorImageSize` to (height,width) of an image. | def tis2hw(size:Union[int,TensorImageSize]) -> Tuple[int,int]:
"Convert `int` or `TensorImageSize` to (height,width) of an image."
if type(size) is str: raise RuntimeError("Expected size to be an int or a tuple, got a string.")
return listify(size, 2) if isinstance(size, int) else listify(size[-2:],2) |
Outline bounding box onto image `Patch`. | def _draw_outline(o:Patch, lw:int):
"Outline bounding box onto image `Patch`."
o.set_path_effects([patheffects.Stroke(
linewidth=lw, foreground='black'), patheffects.Normal()]) |
Draw bounding box on `ax`. | def _draw_rect(ax:plt.Axes, b:Collection[int], color:str='white', text=None, text_size=14):
"Draw bounding box on `ax`."
patch = ax.add_patch(patches.Rectangle(b[:2], *b[-2:], fill=False, edgecolor=color, lw=2))
_draw_outline(patch, 4)
if text is not None:
patch = ax.text(*b[:2], text, verticala... |
Return `Image` object created from image in file `fn`. | def open_image(fn:PathOrStr, div:bool=True, convert_mode:str='RGB', cls:type=Image,
after_open:Callable=None)->Image:
"Return `Image` object created from image in file `fn`."
with warnings.catch_warnings():
warnings.simplefilter("ignore", UserWarning) # EXIF warning from TiffPlugin
x = P... |
Return `ImageSegment` object create from mask in file `fn`. If `div`, divides pixel values by 255. | def open_mask(fn:PathOrStr, div=False, convert_mode='L', after_open:Callable=None)->ImageSegment:
"Return `ImageSegment` object create from mask in file `fn`. If `div`, divides pixel values by 255."
return open_image(fn, div=div, convert_mode=convert_mode, cls=ImageSegment, after_open=after_open) |
Return `ImageSegment` object create from run-length encoded string in `mask_lre` with size in `shape`. | def open_mask_rle(mask_rle:str, shape:Tuple[int, int])->ImageSegment:
"Return `ImageSegment` object create from run-length encoded string in `mask_lre` with size in `shape`."
x = FloatTensor(rle_decode(str(mask_rle), shape).astype(np.uint8))
x = x.view(shape[1], shape[0], -1)
return ImageSegment(x.permu... |
Return run-length encoding string from `img`. | def rle_encode(img:NPArrayMask)->str:
"Return run-length encoding string from `img`."
pixels = np.concatenate([[0], img.flatten() , [0]])
runs = np.where(pixels[1:] != pixels[:-1])[0] + 1
runs[1::2] -= runs[::2]
return ' '.join(str(x) for x in runs) |
Return an image array from run-length encoded string `mask_rle` with `shape`. | def rle_decode(mask_rle:str, shape:Tuple[int,int])->NPArrayMask:
"Return an image array from run-length encoded string `mask_rle` with `shape`."
s = mask_rle.split()
starts, lengths = [np.asarray(x, dtype=int) for x in (s[0:][::2], s[1:][::2])]
starts -= 1
ends = starts + lengths
img = np.zeros(... |
Display `Image` in notebook. | def show_image(img:Image, ax:plt.Axes=None, figsize:tuple=(3,3), hide_axis:bool=True, cmap:str='binary',
alpha:float=None, **kwargs)->plt.Axes:
"Display `Image` in notebook."
if ax is None: fig,ax = plt.subplots(figsize=figsize)
ax.imshow(image2np(img.data), cmap=cmap, alpha=alpha, **kwargs)... |
Scale the coords in `flow` to -1/1 or the image size depending on `to_unit`. | def scale_flow(flow, to_unit=True):
"Scale the coords in `flow` to -1/1 or the image size depending on `to_unit`."
s = tensor([flow.size[0]/2,flow.size[1]/2])[None]
if to_unit: flow.flow = flow.flow/s-1
else: flow.flow = (flow.flow+1)*s
return flow |
Resample pixels in `coords` from `x` by `mode`, with `padding_mode` in ('reflection','border','zeros'). | def _grid_sample(x:TensorImage, coords:FlowField, mode:str='bilinear', padding_mode:str='reflection', remove_out:bool=True)->TensorImage:
"Resample pixels in `coords` from `x` by `mode`, with `padding_mode` in ('reflection','border','zeros')."
coords = coords.flow.permute(0, 3, 1, 2).contiguous().permute(0, 2, ... |
Multiply `c` by `m` - can adjust for rectangular shaped `c`. | def _affine_mult(c:FlowField,m:AffineMatrix)->FlowField:
"Multiply `c` by `m` - can adjust for rectangular shaped `c`."
if m is None: return c
size = c.flow.size()
h,w = c.size
m[0,1] *= h/w
m[1,0] *= w/h
c.flow = c.flow.view(-1,2)
c.flow = torch.addmm(m[:2,2], c.flow, m[:2,:2].t()).vie... |
Applies the inverse affine transform described in `m` to `c`. | def _affine_inv_mult(c, m):
"Applies the inverse affine transform described in `m` to `c`."
size = c.flow.size()
h,w = c.size
m[0,1] *= h/w
m[1,0] *= w/h
c.flow = c.flow.view(-1,2)
a = torch.inverse(m[:2,:2].t())
c.flow = torch.mm(c.flow - m[:2,2], a).view(size)
return c |
Calc `x` to nearest multiple of `mult`. | def _round_multiple(x:int, mult:int=None)->int:
"Calc `x` to nearest multiple of `mult`."
return (int(x/mult+0.5)*mult) if mult is not None else x |
Calc crop shape of `target_px` to nearest multiple of `mult`. | def _get_crop_target(target_px:Union[int,TensorImageSize], mult:int=None)->Tuple[int,int]:
"Calc crop shape of `target_px` to nearest multiple of `mult`."
target_r,target_c = tis2hw(target_px)
return _round_multiple(target_r,mult),_round_multiple(target_c,mult) |
Calc size of `img` to fit in `crop_target` - adjust based on `do_crop`. | def _get_resize_target(img, crop_target, do_crop=False)->TensorImageSize:
"Calc size of `img` to fit in `crop_target` - adjust based on `do_crop`."
if crop_target is None: return None
ch,r,c = img.shape
target_r,target_c = crop_target
ratio = (min if do_crop else max)(r/target_r, c/target_c)
ret... |
Shortcut for `enumerate(subplots.flatten())` | def plot_flat(r, c, figsize):
"Shortcut for `enumerate(subplots.flatten())`"
return enumerate(plt.subplots(r, c, figsize=figsize)[1].flatten()) |
Call `func` for every combination of `r,c` on a subplot | def plot_multi(func:Callable[[int,int,plt.Axes],None], r:int=1, c:int=1, figsize:Tuple=(12,6)):
"Call `func` for every combination of `r,c` on a subplot"
axes = plt.subplots(r, c, figsize=figsize)[1]
for i in range(r):
for j in range(c): func(i,j,axes[i,j]) |
Call `func(i,j).show(ax)` for every combination of `r,c` | def show_multi(func:Callable[[int,int],Image], r:int=1, c:int=1, figsize:Tuple=(9,9)):
"Call `func(i,j).show(ax)` for every combination of `r,c`"
plot_multi(lambda i,j,ax: func(i,j).show(ax), r, c, figsize=figsize) |
Show all `imgs` using `r` rows | def show_all(imgs:Collection[Image], r:int=1, c:Optional[int]=None, figsize=(12,6)):
"Show all `imgs` using `r` rows"
imgs = listify(imgs)
if c is None: c = len(imgs)//r
for i,ax in plot_flat(r,c,figsize): imgs[i].show(ax) |
Apply all `tfms` to the `Image`, if `do_resolve` picks value for random args. | def apply_tfms(self, tfms:TfmList, do_resolve:bool=True, xtra:Optional[Dict[Callable,dict]]=None,
size:Optional[Union[int,TensorImageSize]]=None, resize_method:ResizeMethod=None,
mult:int=None, padding_mode:str='reflection', mode:str='bilinear', remove_out:bool=True)->TensorImage:
... |
Apply any logit, flow, or affine transfers that have been sent to the `Image`. | def refresh(self)->None:
"Apply any logit, flow, or affine transfers that have been sent to the `Image`."
if self._logit_px is not None:
self._px = self._logit_px.sigmoid_()
self._logit_px = None
if self._affine_mat is not None or self._flow is not None:
self.... |
Save the image to `fn`. | def save(self, fn:PathOrStr):
"Save the image to `fn`."
x = image2np(self.data*255).astype(np.uint8)
PIL.Image.fromarray(x).save(fn) |
Access the flow-field grid after applying queued affine transforms. | def flow(self)->FlowField:
"Access the flow-field grid after applying queued affine transforms."
if self._flow is None:
self._flow = _affine_grid(self.shape)
if self._affine_mat is not None:
self._flow = _affine_mult(self._flow,self._affine_mat)
self._affine_m... |
Equivalent to `image = sigmoid(func(logit(image)))`. | def lighting(self, func:LightingFunc, *args:Any, **kwargs:Any):
"Equivalent to `image = sigmoid(func(logit(image)))`."
self.logit_px = func(self.logit_px, *args, **kwargs)
return self |
Equivalent to `image.px = func(image.px)`. | def pixel(self, func:PixelFunc, *args, **kwargs)->'Image':
"Equivalent to `image.px = func(image.px)`."
self.px = func(self.px, *args, **kwargs)
return self |
Equivalent to `image.flow = func(image.flow, image.size)`. | def coord(self, func:CoordFunc, *args, **kwargs)->'Image':
"Equivalent to `image.flow = func(image.flow, image.size)`."
self.flow = func(self.flow, *args, **kwargs)
return self |
Equivalent to `image.affine_mat = image.affine_mat @ func()`. | def affine(self, func:AffineFunc, *args, **kwargs)->'Image':
"Equivalent to `image.affine_mat = image.affine_mat @ func()`."
m = tensor(func(*args, **kwargs)).to(self.device)
self.affine_mat = self.affine_mat @ m
return self |
Resize the image to `size`, size can be a single int. | def resize(self, size:Union[int,TensorImageSize])->'Image':
"Resize the image to `size`, size can be a single int."
assert self._flow is None
if isinstance(size, int): size=(self.shape[0], size, size)
if tuple(size)==tuple(self.shape): return self
self.flow = _affine_grid(size)
... |
Get the affine matrix that will be applied by `refresh`. | def affine_mat(self)->AffineMatrix:
"Get the affine matrix that will be applied by `refresh`."
if self._affine_mat is None:
self._affine_mat = torch.eye(3).to(self.device)
return self._affine_mat |
Get logit(image.px). | def logit_px(self)->LogitTensorImage:
"Get logit(image.px)."
if self._logit_px is None: self._logit_px = logit_(self.px)
return self._logit_px |
Show image on `ax` with `title`, using `cmap` if single-channel, overlaid with optional `y` | def show(self, ax:plt.Axes=None, figsize:tuple=(3,3), title:Optional[str]=None, hide_axis:bool=True,
cmap:str=None, y:Any=None, **kwargs):
"Show image on `ax` with `title`, using `cmap` if single-channel, overlaid with optional `y`"
cmap = ifnone(cmap, defaults.cmap)
ax = show_imag... |
Show the `ImageSegment` on `ax`. | def show(self, ax:plt.Axes=None, figsize:tuple=(3,3), title:Optional[str]=None, hide_axis:bool=True,
cmap:str='tab20', alpha:float=0.5, **kwargs):
"Show the `ImageSegment` on `ax`."
ax = show_image(self, ax=ax, hide_axis=hide_axis, cmap=cmap, figsize=figsize,
interpolatio... |
Mimic the behavior of torch.clone for `ImagePoints` objects. | def clone(self):
"Mimic the behavior of torch.clone for `ImagePoints` objects."
return self.__class__(FlowField(self.size, self.flow.flow.clone()), scale=False, y_first=False) |
Access the flow-field grid after applying queued affine and coord transforms. | def flow(self)->FlowField:
"Access the flow-field grid after applying queued affine and coord transforms."
if self._affine_mat is not None:
self._flow = _affine_inv_mult(self._flow, self._affine_mat)
self._affine_mat = None
self.transformed = True
if len(self.... |
Put `func` with `args` and `kwargs` in `self.flow_func` for later. | def coord(self, func:CoordFunc, *args, **kwargs)->'ImagePoints':
"Put `func` with `args` and `kwargs` in `self.flow_func` for later."
if 'invert' in kwargs: kwargs['invert'] = True
else: warn(f"{func.__name__} isn't implemented for {self.__class__}.")
self.flow_func.append(partial(func, ... |
Equivalent to `self = func_flow(self)`. | def pixel(self, func:PixelFunc, *args, **kwargs)->'ImagePoints':
"Equivalent to `self = func_flow(self)`."
self = func(self, *args, **kwargs)
self.transformed=True
return self |
Resize the image to `size`, size can be a single int. | def resize(self, size:Union[int,TensorImageSize]) -> 'ImagePoints':
"Resize the image to `size`, size can be a single int."
if isinstance(size, int): size=(1, size, size)
self._flow.size = size[1:]
return self |
Return the points associated to this object. | def data(self)->Tensor:
"Return the points associated to this object."
flow = self.flow #This updates flow before we test if some transforms happened
if self.transformed:
if 'remove_out' not in self.sample_kwargs or self.sample_kwargs['remove_out']:
flow = _remove_poi... |
Show the `ImagePoints` on `ax`. | def show(self, ax:plt.Axes=None, figsize:tuple=(3,3), title:Optional[str]=None, hide_axis:bool=True, **kwargs):
"Show the `ImagePoints` on `ax`."
if ax is None: _,ax = plt.subplots(figsize=figsize)
pnt = scale_flow(FlowField(self.size, self.data), to_unit=False).flow.flip(1)
params = {'s... |
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