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https://www.ceaforum.org/ceaod • 8 items • Updated
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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 6 new columns ({'Shoot_Dry (g)', 'M_Stem (cm)', 'S_R_Dry', 'Leaf_Number', 'Root_Dry (g)', 'Harvest'}) and 12 missing columns ({'P (%)', 'K (%)', 'Mg (%)', 'Mn (ppm)', 'B (ppm)', 'Na (ppm)', 'S (ppm)', 'Ca (%)', 'Fe (ppm)', 'Zn (ppm)', 'Cu (ppm)', 'N (%)'}).
This happened while the csv dataset builder was generating data using
hf://datasets/koidra/GH_Basil/OSU_BasilGrafting_Kubota2022/BZL_EXP1EXP2_Growth.csv (at revision ad13abcbfa057aafd8589ebde99440a5ce1dcef1)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
EXP: int64
DAS: int64
Block: string
Treatment: string
SC: string
RS: string
Harvest: int64
Leaf_Number: double
M_Stem (cm): double
Shoot_Dry (g): double
Root_Dry (g): double
S_R_Dry: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1626
to
{'EXP': Value('int64'), 'DAS': Value('int64'), 'Block': Value('string'), 'Treatment': Value('string'), 'SC': Value('string'), 'RS': Value('string'), 'N (%)': Value('float64'), 'P (%)': Value('float64'), 'K (%)': Value('float64'), 'Ca (%)': Value('float64'), 'Mg (%)': Value('float64'), 'S (ppm)': Value('int64'), 'Fe (ppm)': Value('float64'), 'Mn (ppm)': Value('float64'), 'B (ppm)': Value('float64'), 'Cu (ppm)': Value('float64'), 'Zn (ppm)': Value('float64'), 'Na (ppm)': Value('float64')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1456, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1055, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 894, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 970, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 6 new columns ({'Shoot_Dry (g)', 'M_Stem (cm)', 'S_R_Dry', 'Leaf_Number', 'Root_Dry (g)', 'Harvest'}) and 12 missing columns ({'P (%)', 'K (%)', 'Mg (%)', 'Mn (ppm)', 'B (ppm)', 'Na (ppm)', 'S (ppm)', 'Ca (%)', 'Fe (ppm)', 'Zn (ppm)', 'Cu (ppm)', 'N (%)'}).
This happened while the csv dataset builder was generating data using
hf://datasets/koidra/GH_Basil/OSU_BasilGrafting_Kubota2022/BZL_EXP1EXP2_Growth.csv (at revision ad13abcbfa057aafd8589ebde99440a5ce1dcef1)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
EXP int64 | DAS int64 | Block string | Treatment string | SC string | RS string | N (%) float64 | P (%) float64 | K (%) float64 | Ca (%) float64 | Mg (%) float64 | S (ppm) int64 | Fe (ppm) float64 | Mn (ppm) float64 | B (ppm) float64 | Cu (ppm) float64 | Zn (ppm) float64 | Na (ppm) float64 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | 55 | A | N | N | X | 5.02 | 0.45 | 4.66 | 1.85 | 0.85 | 2,660 | 103.36 | 64.36 | 34.83 | 5.77 | 44.94 | 360.31 |
2 | 55 | B | N | N | X | 4.62 | 0.48 | 4.6 | 1.72 | 0.72 | 2,582 | 94.54 | 61.44 | 35.98 | 5.62 | 43.99 | 324.51 |
2 | 55 | C | N | N | X | 4.58 | 0.47 | 4.63 | 1.71 | 0.7 | 2,563 | 89.61 | 44.25 | 35.16 | 5.87 | 45.08 | 305.04 |
2 | 55 | D | N | N | X | 4.27 | 0.5 | 4.71 | 1.97 | 0.74 | 3,046 | 104.13 | 75.6 | 39.78 | 5.48 | 56.82 | 361.87 |
2 | 55 | E | N | N | X | 3.92 | 0.49 | 4.64 | 1.8 | 0.72 | 2,613 | 83.67 | 64.2 | 36.77 | 4.43 | 49.82 | 295.3 |
2 | 55 | F | N | N | X | 4.18 | 0.53 | 4.85 | 1.71 | 0.79 | 2,581 | 88.98 | 55.07 | 33.83 | 5.36 | 54.8 | 301.36 |
2 | 55 | A | NN | N | N | 4.66 | 0.44 | 4.49 | 1.78 | 0.82 | 2,632 | 94.58 | 42.56 | 31.39 | 4.21 | 42.78 | 344.12 |
2 | 55 | B | NN | N | N | 5.09 | 0.51 | 4.78 | 1.72 | 0.77 | 2,799 | 89.99 | 38.77 | 31.84 | 4.28 | 43.3 | 473.67 |
2 | 55 | C | NN | N | N | 4.96 | 0.51 | 4.84 | 1.74 | 0.74 | 2,918 | 95.96 | 55.43 | 33.32 | 4.97 | 51.49 | 479.67 |
2 | 55 | D | NN | N | N | 4.32 | 0.52 | 4.72 | 1.9 | 0.72 | 2,982 | 89.86 | 51.25 | 35.98 | 4.17 | 46.57 | 440.88 |
2 | 55 | E | NN | N | N | 3.68 | 0.46 | 4.5 | 1.79 | 0.7 | 2,539 | 83.67 | 54.8 | 34.22 | 4.58 | 44.59 | 383.33 |
2 | 55 | F | NN | N | N | 4.33 | 0.51 | 4.65 | 1.82 | 0.86 | 2,741 | 91.84 | 65.12 | 34.48 | 5.41 | 53.64 | 370.21 |
2 | 55 | A | NDF | N | DF | 5.52 | 0.62 | 4.97 | 1.93 | 0.9 | 3,684 | 98.66 | 37.57 | 39.97 | 6.22 | 53.16 | 613.77 |
2 | 55 | B | NDF | N | DF | 5.92 | 0.7 | 5.09 | 2.08 | 0.87 | 3,437 | 103.85 | 55.59 | 34.41 | 7 | 58.14 | 657.46 |
2 | 55 | C | NDF | N | DF | 5.62 | 0.63 | 5.01 | 2.02 | 0.87 | 3,260 | 105.19 | 36.68 | 38.27 | 6.41 | 54.88 | 609.51 |
2 | 55 | D | NDF | N | DF | 4.86 | 0.62 | 4.8 | 2.18 | 0.8 | 3,490 | 98.32 | 67.25 | 40.44 | 7.81 | 63.59 | 538.46 |
2 | 55 | E | NDF | N | DF | 4.73 | 0.63 | 4.83 | 2.11 | 0.81 | 3,634 | 99.58 | 51.25 | 40.33 | 5.77 | 61.28 | 542.45 |
2 | 55 | F | NDF | N | DF | 4.93 | 0.61 | 4.91 | 1.88 | 0.88 | 3,193 | 98.58 | 47.99 | 37.28 | 6.35 | 53.35 | 456.78 |
2 | 55 | A | DF | DF | X | 6.22 | 0.79 | 4.76 | 2.53 | 1.07 | 4,689 | 112 | 47.06 | 44.34 | 9.14 | 69.03 | 523.78 |
2 | 55 | B | DF | DF | X | 6.01 | 0.74 | 4.94 | 2.58 | 1 | 4,884 | 111.67 | 65.79 | 43.96 | 8.93 | 66.57 | 551.74 |
2 | 55 | C | DF | DF | X | 6.15 | 0.79 | 4.95 | 2.74 | 1.01 | 5,036 | 118.78 | 77.44 | 45.82 | 9.92 | 82.05 | 565.25 |
2 | 55 | D | DF | DF | X | 5.63 | 0.76 | 4.99 | 2.66 | 0.92 | 4,907 | 115.39 | 74.41 | 48.4 | 9.01 | 79.9 | 502.37 |
2 | 55 | E | DF | DF | X | 5.42 | 0.79 | 4.85 | 2.69 | 0.96 | 4,618 | 114.47 | 71.22 | 44.92 | 7.87 | 78.4 | 516.65 |
2 | 55 | F | DF | DF | X | 5.69 | 0.77 | 4.87 | 2.51 | 1.1 | 4,554 | 118.12 | 64.75 | 44.78 | 9.88 | 75.18 | 543.46 |
2 | 55 | A | DFDF | DF | DF | 6.22 | 0.83 | 4.98 | 2.47 | 1.04 | 4,792 | 111.54 | 47.3 | 38.25 | 8.86 | 64.27 | 658.88 |
2 | 55 | B | DFDF | DF | DF | 6.23 | 0.78 | 5.01 | 2.47 | 1.05 | 4,790 | 107.69 | 41.7 | 38.45 | 9.3 | 62.77 | 543.69 |
2 | 55 | C | DFDF | DF | DF | 5.9 | 0.87 | 4.87 | 2.49 | 1.02 | 4,933 | 116.86 | 51.64 | 40.18 | 8.85 | 66.82 | 703.23 |
2 | 55 | D | DFDF | DF | DF | 5.89 | 0.83 | 4.96 | 2.7 | 0.95 | 4,927 | 116.62 | 52.39 | 41.98 | 8.87 | 75.09 | 612.82 |
2 | 55 | E | DFDF | DF | DF | 5.64 | 0.8 | 4.94 | 2.66 | 0.94 | 4,831 | 112.62 | 58.03 | 41.03 | 8.25 | 77.56 | 687.93 |
2 | 55 | F | DFDF | DF | DF | 5.9 | 0.88 | 4.73 | 2.46 | 1.05 | 4,867 | 117.07 | 48.42 | 41.25 | 10.83 | 69.76 | 642.83 |
2 | 55 | A | DFN | DF | N | 6.47 | 0.85 | 5.3 | 2.31 | 0.94 | 3,903 | 102.37 | 80.83 | 30.55 | 6.08 | 59.74 | 481.05 |
2 | 55 | B | DFN | DF | N | 6.18 | 0.78 | 5.38 | 2.48 | 0.92 | 4,232 | 107.17 | 60.93 | 33.21 | 7.9 | 60.82 | 536.6 |
2 | 55 | C | DFN | DF | N | 5.89 | 0.81 | 5.18 | 2.58 | 0.85 | 4,291 | 106.46 | 59.97 | 36.52 | 8.33 | 65.24 | 541.47 |
2 | 55 | D | DFN | DF | N | 5.86 | 0.89 | 5.25 | 2.51 | 0.84 | 4,316 | 113.98 | 67.54 | 37.06 | 6.64 | 69.22 | 541 |
2 | 55 | E | DFN | DF | N | 5.75 | 0.88 | 5.27 | 2.66 | 0.86 | 4,234 | 113.19 | 70.81 | 36.71 | 7.19 | 71.04 | 520.01 |
2 | 55 | F | DFN | DF | N | 6.07 | 0.84 | 4.98 | 2.33 | 0.98 | 3,992 | 115.03 | 82.38 | 36.69 | 7.84 | 61.63 | 500.37 |
1 | 70 | A | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | B | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | C | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | D | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | E | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | F | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | A | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | B | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | C | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | D | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | E | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | F | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | A | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | B | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | C | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | D | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | E | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | F | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | A | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | B | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | C | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | D | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | E | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | F | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | A | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | B | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | C | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | D | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | E | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | F | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | A | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | B | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | C | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | D | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | E | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
1 | 70 | F | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | A | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | A | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | A | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | A | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | A | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | A | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | B | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | B | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | B | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | B | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | B | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | B | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | C | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | C | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | C | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | C | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | C | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | C | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | D | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | D | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | D | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | D | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | D | DFDF | DF | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | D | DFN | DF | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | E | N | N | X | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | E | NN | N | N | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | E | NDF | N | DF | null | null | null | null | null | null | null | null | null | null | null | null |
2 | 55 | E | DF | DF | X | null | null | null | null | null | null | null | null | null | null | null | null |
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