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[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){backtrack}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){gcm}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){dir}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){gcm}<LSEP>[](symbol){stepPattern}<LEND>[statement 1; assign](){<-}<... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){mdwt}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){h}<LSEP>[](symbol){L}<LEND>[body; block](){}<LSEP>[statement 0; call](){.Call}<LSEP>[call name; litteral](str){do_mdwt}<LEND>[argument 0; call](){}<LSEP>[](symbol){as.matrix}<LSEP>[](sym... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){read.mtg}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){file}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){listdf}<LEND>[call](){}<LSEP>[](symbol){list}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){mtgcomp... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){jeffreys}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x1}<LSEP>[](symbol){x2}<LSEP>[](symbol){check}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){p}<LEND>[call](){}<LSEP>[](symbol){NCOL}<LSEP>[](symbol){x1}<LEND>[statement 1; co... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){readMeta}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){file}<LSEP>[](symbol){progbar}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){checkFile}<LSEP>[](symbol){file}<LEND>[statement 1; control flow](){if}<LSEP>[con... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){mean.folder}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){...}<LSEP>[](symbol){na.rm}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){fold}<LSEP>[](symbol){x}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){x}<LE... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){rt_ticket_history_comment}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){ticket_id}<LSEP>[](symbol){comment_text}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){url}<LEND>[call](){}<LSEP>[](symbol){rt_url}<LSEP>... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){lldist}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){lat}<LSEP>[](symbol){long}<LSEP>[](symbol){data}<LSEP>[](symbol){r}<LSEP>[](symbol){i}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[ar... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){matdistl2d}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){method}<LSEP>[](symbol){varwL}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.data.frame}<LSEP>[](symbol){x}<LEND>[true... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){fpcat}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){xf}<LSEP>[](symbol){group.name}<LSEP>[](symbol){method}<LSEP>[](symbol){ind}<LSEP>[](symbol){nvar}<LSEP>[](symbol){gaussiand}<LSEP>[](symbol){windowh}<LSEP>[](symbol){normed}<LSEP>[](symbol){centered}<LSE... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){interpret.mdsdd}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){nscore}<LSEP>[](symbol){mma}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){mma}<LEND>[call](){}<LSEP>[](symbol){match.arg}<LSEP>... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){insertPackage}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){file}<LSEP>[](symbol){repodir}<LSEP>[](symbol){commit}<LSEP>[](symbol){pullfirst}<LSEP>[](symbol){action}<LSEP>[](symbol){location}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; c... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){ata_lpsolve}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){time_limit}<LSEP>[](symbol){message}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!=}<LEND>[argume... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){dr.fit.psave}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){object}<LSEP>[](symbol){numdir}<LSEP>[](symbol){nslices}<LSEP>[](symbol){pool}<LSEP>[](symbol){slice.function}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](s... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.filter.callrate}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){method}<LSEP>[](symbol){threshold}<LSEP>[](symbol){mono.rm}<LSEP>[](symbol){recalc}<LSEP>[](symbol){recursive}<LSEP>[](symbol){plot}<LSEP>[](symbol){bins}<LSEP>[](symbol){v... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.hwe.pop}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){pvalue}<LSEP>[](symbol){plot}<LSEP>[](symbol){HWformat}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){pkg}<LSEP>[litteral](str){HardyWeinberg}<LEND>[state... |
[](){expression}<LSEP>[litteral](NULL){NULL} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.define.pop}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){ind.list}<LSEP>[](symbol){new}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){funname}<LEND>[call](){}<LSEP>[](symbol){[[}<LEND... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){interpret}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){nscore}<LSEP>[](symbol){...}<LEND>[body; call](){}<LSEP>[](symbol){UseMethod}<LSEP>[argument 0; litteral](str){interpret} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){lmm}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){y}<LSEP>[](symbol){v}<LSEP>[](symbol){x}<LSEP>[](symbol){n.burn}<LSEP>[](symbol){n.sample}<LSEP>[](symbol){tol}<LSEP>[](symbol){method}<LSEP>[](symbol){dta}<LSEP>[](symbol){print.time}<LEND>[body; block](){... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){getRepoInfo}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){repopath}<LSEP>[](symbol){type}<LSEP>[](symbol){pkg}<LSEP>[](symbol){version}<LSEP>[](symbol){location}<LEND>[body; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){.check_location_arg}<LSEP>... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl2bayescan}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){outfile}<LSEP>[](symbol){outpath}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){funname}<LEND>[call](){}<LSEP>[](symbol){[[}<LEN... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){ddhellingerpar}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){p1}<LSEP>[](symbol){p2}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){k}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){dim}<LSEP>[]... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){cmd_check}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){%in%}<LSEP>[](symbol){x}<LEND>[argument 1; ca... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.costdistances}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){landscape}<LSEP>[](symbol){locs}<LSEP>[](symbol){method}<LSEP>[](symbol){NN}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){pkg}<LSEP>[litteral](str){gdistance}<LEND>[s... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){distl2dpar}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){mean1}<LSEP>[](symbol){var1}<LSEP>[](symbol){mean2}<LSEP>[](symbol){var2}<LSEP>[](symbol){check}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[](symbol){check}<LEND>[true branch... |
[](){expression}<LSEP>[litteral](NULL){NULL}<LEND>[assign](){<-}<LSEP>[](symbol){ata_check_item_pool}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){pool}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.l... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl2related}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){outfile}<LSEP>[](symbol){outpath}<LSEP>[](symbol){save}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){gd}<LEND>[call](){}<LSEP>[](symbol){as.matrix}<LSEP>... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.pcoa.plot.3d}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){glPca}<LSEP>[](symbol){x}<LSEP>[](symbol){xaxis}<LSEP>[](symbol){yaxis}<LSEP>[](symbol){zaxis}<LSEP>[](symbol){radius}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){fdiscd.predict}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){xf}<LSEP>[](symbol){class.var}<LSEP>[](symbol){gaussiand}<LSEP>[](symbol){distance}<LSEP>[](symbol){crit}<LSEP>[](symbol){windowh}<LSEP>[](symbol){misclass.ratio}<LEND>[body; block](){}<LSEP>[sta... |
[](){expression}<LSEP>[litteral](str){metadata_example} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){rt_ticket_attachments}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){ticket_id}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){url}<LEND>[call](){}<LSEP>[](symbol){rt_url}<LSEP>[argument 0; litteral](str){ticket... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){kurtosis.folder}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){na.rm}<LSEP>[](symbol){type}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](sy... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl2treemix}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){outfile}<LSEP>[](symbol){outpath}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){funname}<LEND>[call](){}<LSEP>[](symbol){[[}<LEND... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.collapse}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){fd}<LSEP>[](symbol){tpop}<LSEP>[](symbol){tloc}<LSEP>[](symbol){pb}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){funname}<LEND>[call](){}<LSEP>[](... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.filter.locmetric}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){metric}<LSEP>[](symbol){upper}<LSEP>[](symbol){lower}<LSEP>[](symbol){keep}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol... |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){metaInfo}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){id}<LSEP>[](symbol){hasfileonly}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){id}<LEND>[call](){}<LSEP>[](symbol){as.integer}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<L... |
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