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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'pval_std', 'overlap_std', 'overlap_mean', 'score_mean', 'pval_mean', 'setsize_mean', 'setsize_std', 'score_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_active_site/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 6f3feac54635cc79727b98bb101d4c0105a2114b)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 810
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'pval_std', 'overlap_std', 'overlap_mean', 'score_mean', 'pval_mean', 'setsize_mean', 'setsize_std', 'score_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_active_site/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 6f3feac54635cc79727b98bb101d4c0105a2114b)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
ATP synthase, F0 complex, subunit A, active site [IPR023011]
| 0.232877
| 1
| 1.561507
| 0.039873
| 0.422664
| 0
| 2.46323
| 0.114775
|
ATP-citrate lyase/succinyl-CoA ligase, active site [IPR017440]
| 1.228155
| 2
| -0.282694
| 0.636706
| 0.631982
| 0
| 0.866906
| 0.309743
|
ATP:guanido phosphotransferase active site [IPR022415]
| 1.417476
| 2
| -0.766944
| 0.476218
| 0.635125
| 0
| 1.078508
| 0.324191
|
ATPase, alpha/beta subunit, nucleotide-binding domain, active site [IPR020003]
| 1.597087
| 4
| -0.055705
| 0.552192
| 1.167019
| 0
| 0.906156
| 0.311
|
Adenosine/AMP deaminase active site [IPR006650]
| 0.353125
| 1.23125
| 1.038841
| 0.208555
| 0.54514
| 0.421632
| 1.927372
| 0.280386
|
Adenylosuccinate synthase, active site [IPR033128]
| 0.57767
| 1
| -0.237546
| 0.313245
| 0.493931
| 0
| 1.690871
| 0.287429
|
Beta-ketoacyl synthase, active site [IPR018201]
| 0.538835
| 1.140777
| 0.04437
| 0.373482
| 0.54501
| 0.347791
| 1.579769
| 0.315905
|
Carboxylesterase type B, active site [IPR019826]
| 0.307692
| 1
| 1.321249
| 0.137958
| 0.461538
| 0
| 2.168839
| 0.248263
|
Citrate synthase active site [IPR019810]
| 0.912621
| 1
| -1.866554
| 0.126338
| 0.282389
| 0
| 1.360249
| 0.199331
|
ClpP, Ser active site [IPR018215]
| 0.308252
| 1
| 0.941551
| 0.12303
| 0.461771
| 0
| 2.27149
| 0.210574
|
ClpP, histidine active site [IPR033135]
| 0.308252
| 1
| 0.941551
| 0.12303
| 0.461771
| 0
| 2.27149
| 0.210574
|
Coenzyme A transferase active site [IPR004164]
| 0.770408
| 1
| -1.280804
| 0.173199
| 0.42057
| 0
| 1.902844
| 0.249781
|
Cysteine peptidase, asparagine active site [IPR025661]
| 0.728614
| 1.412979
| 0.136019
| 0.243238
| 0.706131
| 0.595417
| 1.952946
| 0.285719
|
Cysteine peptidase, cysteine active site [IPR000169]
| 1.992718
| 4.106796
| -0.40551
| 0.407883
| 1.215772
| 1.044287
| 1.154466
| 0.302341
|
Cysteine peptidase, histidine active site [IPR025660]
| 0.693215
| 1.374631
| 0.171726
| 0.235226
| 0.72887
| 0.61788
| 1.977709
| 0.282256
|
DNA methylase, C-5 cytosine-specific, active site [IPR018117]
| 0.614078
| 1.01699
| -0.446101
| 0.258079
| 0.496684
| 0.129235
| 1.850556
| 0.289049
|
DNA topoisomerase I, active site [IPR018521]
| 0.832524
| 1
| -1.216274
| 0.22807
| 0.3734
| 0
| 1.463976
| 0.249191
|
DNA topoisomerase, type IA, active site [IPR023406]
| 0.488
| 1.112
| 0.144837
| 0.263054
| 0.588095
| 0.315366
| 1.961696
| 0.299718
|
DNA/RNA non-specific endonuclease, active site [IPR018524]
| 0.52459
| 1
| -0.322131
| 0.267052
| 0.499395
| 0
| 1.805737
| 0.263467
|
Ferrochelatase, active site [IPR019772]
| 0.294118
| 1
| 0.983556
| 0.144946
| 0.455645
| 0
| 2.093906
| 0.214758
|
Glucose-6-phosphate dehydrogenase, active site [IPR019796]
| 0.495146
| 1
| -0.02702
| 0.302838
| 0.499976
| 0
| 1.733506
| 0.285964
|
Glutaredoxin active site [IPR011767]
| 0.709677
| 1
| -1.050648
| 0.16448
| 0.453911
| 0
| 1.978354
| 0.243896
|
Glyceraldehyde 3-phosphate dehydrogenase, active site [IPR020830]
| 0.788835
| 1
| -1.107163
| 0.234144
| 0.408135
| 0
| 1.563146
| 0.261908
|
Glycoside hydrolase, family 2, active site [IPR023232]
| 0.163636
| 1
| 1.561391
| 0.139535
| 0.369945
| 0
| 1.732645
| 0.210128
|
Glycosyl hydrolases family 18 (GH18) active site [IPR001579]
| 0.307692
| 1
| 0.953591
| 0.122816
| 0.461538
| 0
| 2.15742
| 0.19284
|
Glycosyl hydrolases family 31, active site [IPR030458]
| 0.660194
| 2
| 0.124466
| 0.479817
| 0.741337
| 0
| 1.252193
| 0.322298
|
Histidine acid phosphatase active site [IPR033379]
| 0.69802
| 2.04703
| 0.961146
| 0.294941
| 0.595275
| 0.281907
| 1.353347
| 0.272068
|
Hydroxymethylglutaryl-CoA lyase, active site [IPR000138]
| 0.738786
| 1
| -1.170053
| 0.174817
| 0.439296
| 0
| 1.767849
| 0.22537
|
Hydroxymethylglutaryl-coenzyme A synthase, active site [IPR000590]
| 0.946602
| 1
| -2.124355
| 0.107559
| 0.224826
| 0
| 1.291438
| 0.192115
|
L-lactate dehydrogenase, active site [IPR018177]
| 1.708738
| 2
| -0.851306
| 0.451803
| 0.504948
| 0
| 1.055882
| 0.327474
|
Leu/Phe/Val dehydrogenases active site [IPR033524]
| 0.423858
| 1
| 0.314244
| 0.292097
| 0.494168
| 0
| 1.64993
| 0.277646
|
Lipase, GDXG, putative serine active site [IPR033140]
| 0.307692
| 1
| 0.870849
| 0.193955
| 0.461538
| 0
| 1.929602
| 0.253287
|
Malate dehydrogenase, active site [IPR001252]
| 1.628641
| 2
| -1.009284
| 0.418655
| 0.549011
| 0
| 0.967264
| 0.296262
|
Nucleoside diphosphate kinase, active site [IPR023005]
| 1.31068
| 2.191748
| -0.547099
| 0.463072
| 0.750781
| 0.70341
| 1.227705
| 0.331856
|
Orotidine 5'-phosphate decarboxylase, active site [IPR018089]
| 0.822816
| 1
| -1.193197
| 0.255562
| 0.381825
| 0
| 1.489068
| 0.273027
|
Peptidase S16, active site [IPR008268]
| 0.662621
| 1.182039
| -0.252277
| 0.376418
| 0.557614
| 0.385877
| 1.506026
| 0.303718
|
Peptidase S26A, signal peptidase I, serine active site [IPR019756]
| 0.232737
| 1.025575
| 1.51314
| 0.1139
| 0.428585
| 0.157865
| 2.000725
| 0.211424
|
Peptidase S8, subtilisin, His-active site [IPR022398]
| 0.75
| 1
| -0.942097
| 0.268234
| 0.433013
| 0
| 1.563151
| 0.27346
|
Peptidase S8, subtilisin, Ser-active site [IPR023828]
| 0.75
| 1
| -0.942097
| 0.268234
| 0.433013
| 0
| 1.563151
| 0.27346
|
Peptidase S9, serine active site [IPR002471]
| 1.162621
| 1.975728
| -0.268193
| 0.559044
| 0.720882
| 0.153892
| 1.11941
| 0.332055
|
Peptidase family C14A, His active site [IPR016129]
| 0.939394
| 2.070707
| -0.146252
| 0.406757
| 0.83062
| 1.050116
| 1.565777
| 0.342095
|
Peptidase family C14A, cysteine active site [IPR033139]
| 0.939394
| 2.070707
| -0.146252
| 0.406757
| 0.83062
| 1.050116
| 1.565777
| 0.342095
|
Phosphoglycerate/bisphosphoglycerate mutase, active site [IPR001345]
| 1.13835
| 1.968447
| -0.210917
| 0.598898
| 0.68817
| 0.174808
| 1.018314
| 0.331085
|
Phosphoribosylglycinamide formyltransferase, active site [IPR001555]
| 0.774272
| 1
| -1.087385
| 0.250637
| 0.418061
| 0
| 1.569261
| 0.270055
|
Protein-tyrosine phosphatase, active site [IPR016130]
| 2.456311
| 6.364078
| -0.376874
| 0.517544
| 1.528224
| 2.014142
| 0.861614
| 0.290506
|
Pyridine nucleotide-disulphide oxidoreductase, class I, active site [IPR012999]
| 1.432039
| 2.953883
| -0.267548
| 0.599899
| 0.877299
| 0.362448
| 0.899754
| 0.316823
|
Pyruvate kinase, active site [IPR018209]
| 0.745146
| 1
| -0.930186
| 0.257542
| 0.435779
| 0
| 1.608092
| 0.269035
|
Ribonuclease T2, His active site 1 [IPR018188]
| 0.5
| 1
| -0.009087
| 0.104051
| 0.5
| 0
| 2.475415
| 0.194044
|
Ribonuclease T2, His active site 2 [IPR033130]
| 0.5
| 1
| -0.009087
| 0.104051
| 0.5
| 0
| 2.475415
| 0.194044
|
Ribonucleotide reductase small subunit, acitve site [IPR030475]
| 0.296117
| 1.211165
| 1.071608
| 0.279513
| 0.477335
| 0.408135
| 1.422422
| 0.275573
|
Serine carboxypeptidase, serine active site [IPR018202]
| 1.830097
| 2.997573
| 0.713577
| 0.176117
| 0.730917
| 0.049207
| 1.66361
| 0.210396
|
Serine carboxypeptidases, histidine active site [IPR033124]
| 0.326034
| 1
| 0.97951
| 0.090348
| 0.46876
| 0
| 2.406203
| 0.186261
|
Serine proteases, trypsin family, histidine active site [IPR018114]
| 0.875
| 1
| -2.308052
| 0.063486
| 0.330719
| 0
| 1.714601
| 0.165625
|
Serine/threonine-protein kinase, active site [IPR008271]
| 14.963592
| 48.092233
| -0.251406
| 0.584556
| 7.38643
| 10.059833
| 0.946334
| 0.327113
|
Thermonuclease active site [IPR002071]
| 0.88835
| 1
| -1.232632
| 0.293737
| 0.314936
| 0
| 1.213602
| 0.283133
|
Thiolase, active site [IPR020610]
| 2.56068
| 4.84466
| -0.530897
| 0.395215
| 1.652802
| 0.362228
| 1.0786
| 0.288044
|
Thiolase, acyl-enzyme intermediate active site [IPR020615]
| 3.315534
| 4.84466
| -1.096529
| 0.296334
| 1.27426
| 0.362228
| 0.879134
| 0.273418
|
Thymidylate synthase, active site [IPR020940]
| 0.403226
| 1
| 0.322284
| 0.270956
| 0.490545
| 0
| 1.833734
| 0.280601
|
Transaldolase, active site [IPR018225]
| 0.822816
| 1
| -1.32758
| 0.20682
| 0.381825
| 0
| 1.586265
| 0.258256
|
Triosephosphate isomerase, active site [IPR020861]
| 0.873786
| 1
| -1.876609
| 0.118742
| 0.33209
| 0
| 1.589088
| 0.206107
|
Tyrosine-protein kinase, active site [IPR008266]
| 1.966019
| 4.424757
| -0.120052
| 0.623009
| 1.361328
| 1.724092
| 0.770166
| 0.29168
|
Ubiquitin-activating enzyme E1, Cys active site [IPR033127]
| 2.084951
| 2.966019
| -0.412106
| 0.510543
| 0.800526
| 0.181179
| 0.949027
| 0.299037
|
Ubiquitin-conjugating enzyme, active site [IPR023313]
| 2.941748
| 5.601942
| -0.275266
| 0.476328
| 1.556853
| 0.879539
| 0.970372
| 0.298381
|
Uracil-DNA glycosylase, active site [IPR018085]
| 0.495833
| 1
| 0.016282
| 0.194843
| 0.499983
| 0
| 2.147132
| 0.255524
|
ATP synthase, F0 complex, subunit A, active site [IPR023011]
| 0
| 1
| 2.086242
| 0.036957
| 0
| 0
| 0
| 0
|
ATP:guanido phosphotransferase active site [IPR022415]
| 1
| 2
| 2.154723
| 0.031183
| 0
| 0
| 0
| 0
|
ATPase, alpha/beta subunit, nucleotide-binding domain, active site [IPR020003]
| 1
| 3
| -0.219974
| 0.825891
| 0
| 0
| 0
| 0
|
Adenosine/AMP deaminase active site [IPR006650]
| 0
| 2
| 0.727029
| 0.467208
| 0
| 0
| 0
| 0
|
Adenylosuccinate synthase, active site [IPR033128]
| 0
| 1
| 3.133539
| 0.001727
| 0
| 0
| 0
| 0
|
Beta-ketoacyl synthase, active site [IPR018201]
| 1
| 1
| -1.057912
| 0.290096
| 0
| 0
| 0
| 0
|
Carboxylesterase type B, active site [IPR019826]
| 0
| 1
| 1.15406
| 0.248475
| 0
| 0
| 0
| 0
|
ClpP, Ser active site [IPR018215]
| 0
| 1
| 3.12944
| 0.001751
| 0
| 0
| 0
| 0
|
ClpP, histidine active site [IPR033135]
| 0
| 1
| 3.12944
| 0.001751
| 0
| 0
| 0
| 0
|
Cysteine peptidase, asparagine active site [IPR025661]
| 2
| 4
| 1.533179
| 0.125232
| 0
| 0
| 0
| 0
|
Cysteine peptidase, cysteine active site [IPR000169]
| 1
| 6
| 1.334313
| 0.182101
| 0
| 0
| 0
| 0
|
Cysteine peptidase, histidine active site [IPR025660]
| 1
| 4
| 1.131886
| 0.257683
| 0
| 0
| 0
| 0
|
Ferrochelatase, active site [IPR019772]
| 0
| 1
| 3.086305
| 0.002027
| 0
| 0
| 0
| 0
|
Glucose-6-phosphate dehydrogenase, active site [IPR019796]
| 0
| 1
| 1.514134
| 0.129992
| 0
| 0
| 0
| 0
|
Glutaredoxin active site [IPR011767]
| 0
| 1
| 3.340285
| 0.000837
| 0
| 0
| 0
| 0
|
Glycoside hydrolase, family 2, active site [IPR023232]
| 0
| 1
| 1.88611
| 0.05928
| 0
| 0
| 0
| 0
|
Glycosyl hydrolases family 18 (GH18) active site [IPR001579]
| 0
| 1
| 3.168304
| 0.001533
| 0
| 0
| 0
| 0
|
Glycosyl hydrolases family 31, active site [IPR030458]
| 0
| 1
| 2.343287
| 0.019115
| 0
| 0
| 0
| 0
|
Histidine acid phosphatase active site [IPR033379]
| 1
| 2
| 1.75513
| 0.079237
| 0
| 0
| 0
| 0
|
Hydroxymethylglutaryl-CoA lyase, active site [IPR000138]
| 0
| 1
| 1.683515
| 0.092276
| 0
| 0
| 0
| 0
|
Leu/Phe/Val dehydrogenases active site [IPR033524]
| 0
| 1
| 1.870077
| 0.061473
| 0
| 0
| 0
| 0
|
Lipase, GDXG, putative serine active site [IPR033140]
| 0
| 1
| 1.732049
| 0.083265
| 0
| 0
| 0
| 0
|
Peptidase S16, active site [IPR008268]
| 1
| 2
| -0.34875
| 0.727277
| 0
| 0
| 0
| 0
|
Peptidase S26A, signal peptidase I, serine active site [IPR019756]
| 1
| 2
| -0.985063
| 0.324593
| 0
| 0
| 0
| 0
|
Peptidase S9, serine active site [IPR002471]
| 0
| 2
| 1.464026
| 0.143187
| 0
| 0
| 0
| 0
|
Peptidase family C14A, His active site [IPR016129]
| 1
| 2
| 0.570927
| 0.568049
| 0
| 0
| 0
| 0
|
Peptidase family C14A, cysteine active site [IPR033139]
| 1
| 2
| 0.570927
| 0.568049
| 0
| 0
| 0
| 0
|
Protein-tyrosine phosphatase, active site [IPR016130]
| 0
| 6
| 0.207754
| 0.835421
| 0
| 0
| 0
| 0
|
Pyridine nucleotide-disulphide oxidoreductase, class I, active site [IPR012999]
| 0
| 2
| 0.538436
| 0.590276
| 0
| 0
| 0
| 0
|
Ribonuclease T2, His active site 1 [IPR018188]
| 0
| 1
| 3.196841
| 0.001389
| 0
| 0
| 0
| 0
|
Ribonuclease T2, His active site 2 [IPR033130]
| 0
| 1
| 3.196841
| 0.001389
| 0
| 0
| 0
| 0
|
Ribonucleotide reductase small subunit, acitve site [IPR030475]
| 2
| 2
| -0.858013
| 0.390885
| 0
| 0
| 0
| 0
|
Serine carboxypeptidase, serine active site [IPR018202]
| 2
| 3
| 0.903435
| 0.366295
| 0
| 0
| 0
| 0
|
Serine carboxypeptidases, histidine active site [IPR033124]
| 0
| 1
| 2.332225
| 0.019689
| 0
| 0
| 0
| 0
|
Serine/threonine-protein kinase, active site [IPR008271]
| 13
| 41
| 0.087045
| 0.930635
| 0
| 0
| 0
| 0
|
Thiolase, active site [IPR020610]
| 0
| 1
| 3.170345
| 0.001523
| 0
| 0
| 0
| 0
|
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