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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'setsize', 'overlap', 'pval', 'score'}) and 8 missing columns ({'overlap_std', 'setsize_std', 'score_std', 'score_mean', 'setsize_mean', 'pval_mean', 'pval_std', 'overlap_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_binding_site/fragment/C001/C001_val_log2fc/harmon.tsv (at revision bcb7b6655c20fb102dee5053b73570c59bdeac7d)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 810
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'setsize', 'overlap', 'pval', 'score'}) and 8 missing columns ({'overlap_std', 'setsize_std', 'score_std', 'score_mean', 'setsize_mean', 'pval_mean', 'pval_std', 'overlap_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_binding_site/fragment/C001/C001_val_log2fc/harmon.tsv (at revision bcb7b6655c20fb102dee5053b73570c59bdeac7d)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
| 2.257282
| 3.470874
| -0.84423
| 0.4053
| 1.106828
| 0.658497
| 0.93741
| 0.309583
|
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
| 0.262136
| 1
| 1.027694
| 0.235933
| 0.439796
| 0
| 1.724049
| 0.273022
|
6-phosphogluconate-binding site [IPR006184]
| 0.762136
| 1
| -0.998784
| 0.262901
| 0.425775
| 0
| 1.611888
| 0.283444
|
AP endonuclease 1, binding site [IPR020847]
| 0.76699
| 1.109223
| -0.805427
| 0.224964
| 0.506346
| 0.311919
| 1.892955
| 0.2753
|
APOBEC/CMP deaminase, zinc-binding [IPR016192]
| 0.642361
| 1.170139
| -0.349237
| 0.287224
| 0.527584
| 0.375755
| 1.851386
| 0.305227
|
Aconitase family, 4Fe-4S cluster binding site [IPR018136]
| 1.320388
| 1.919903
| -0.846708
| 0.476944
| 0.618699
| 0.271443
| 1.020785
| 0.325601
|
Adenylosuccinate synthase, GTP-binding site [IPR018220]
| 0.57767
| 1
| -0.237546
| 0.313245
| 0.493931
| 0
| 1.690871
| 0.287429
|
Adrenodoxin, iron-sulphur binding site [IPR018298]
| 0.428571
| 1
| -0.437706
| 0.277171
| 0.494872
| 0
| 1.928171
| 0.291378
|
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
| 1.337379
| 1.754854
| -1.182845
| 0.338453
| 0.62338
| 0.430174
| 1.24864
| 0.318335
|
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
| 1.092457
| 1.946472
| -0.095038
| 0.562738
| 0.677204
| 0.282595
| 1.082112
| 0.328113
|
Aminotransferases, class-I, pyridoxal-phosphate-binding site [IPR004838]
| 1.533981
| 2
| -0.847738
| 0.488675
| 0.620296
| 0
| 0.966126
| 0.318745
|
Aryldialkylphosphatase, zinc-binding site [IPR017947]
| 0.469388
| 1
| 0.21913
| 0.228243
| 0.499062
| 0
| 1.722236
| 0.246405
|
Beta tubulin, autoregulation binding site [IPR013838]
| 3.553398
| 5.541262
| 0.582351
| 0.380834
| 1.557806
| 0.96328
| 1.190626
| 0.305896
|
Biotin-binding site [IPR001882]
| 3.682039
| 4
| -1.814309
| 0.094003
| 0.726321
| 0
| 1.374683
| 0.194565
|
Coenzyme A transferase binding site [IPR004163]
| 0.770408
| 1
| -1.280804
| 0.173199
| 0.42057
| 0
| 1.902844
| 0.249781
|
Copper centre Cu(A) [IPR001505]
| 0.191748
| 1
| 1.410845
| 0.166434
| 0.393676
| 0
| 1.839422
| 0.245172
|
Cytochrome b5, heme-binding site [IPR018506]
| 0.165049
| 1
| 1.885724
| 0.04684
| 0.371224
| 0
| 2.052073
| 0.114122
|
Cytochrome c oxidase, subunit I, copper-binding site [IPR023615]
| 0.666667
| 1
| -1.094907
| 0.183442
| 0.471405
| 0
| 2.194941
| 0.258485
|
Cytochrome c oxidase, subunit Vb, zinc binding site [IPR020893]
| 0.530864
| 1
| -0.177729
| 0.334737
| 0.499046
| 0
| 1.60788
| 0.290579
|
EF-Hand 1, calcium-binding site [IPR018247]
| 10.019417
| 36.706311
| 0.953294
| 0.389456
| 3.760372
| 3.057485
| 1.108235
| 0.340884
|
Fumarate reductase/succinate dehydrogenase, FAD-binding site [IPR003952]
| 0.730583
| 1
| -0.839577
| 0.269245
| 0.443657
| 0
| 1.599795
| 0.276511
|
Hexokinase, binding site [IPR019807]
| 0.883495
| 2
| 0.021725
| 0.573833
| 0.763881
| 0
| 1.132435
| 0.341544
|
IQ motif, EF-hand binding site [IPR000048]
| 4.902913
| 10.793689
| -0.227305
| 0.513462
| 2.787854
| 2.339749
| 1.00213
| 0.321441
|
Inositol monophosphatase, metal-binding site [IPR020583]
| 0.976623
| 1.296104
| -1.363845
| 0.237896
| 0.526665
| 0.494763
| 1.550696
| 0.289486
|
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
| 0.519231
| 1
| 0.026403
| 0.157792
| 0.49963
| 0
| 2.118692
| 0.233356
|
Manganese/iron superoxide dismutase, binding site [IPR019833]
| 0.82716
| 1
| -1.477586
| 0.146227
| 0.378108
| 0
| 1.749619
| 0.218
|
PPM-type phosphatase, divalent cation binding [IPR000222]
| 1.376214
| 2.570388
| -0.19959
| 0.583422
| 0.776923
| 0.636584
| 0.955501
| 0.312223
|
Peptidase M16, zinc-binding site [IPR001431]
| 1.730583
| 5
| 0.677655
| 0.474006
| 1.21189
| 0
| 0.807986
| 0.314627
|
Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]
| 1.199029
| 1.822816
| -0.53648
| 0.452076
| 0.699652
| 0.381825
| 1.288602
| 0.33042
|
Porphobilinogen deaminase, dipyrromethane cofactor binding site [IPR022419]
| 0.622691
| 1
| -0.354498
| 0.266508
| 0.484713
| 0
| 1.818948
| 0.275048
|
Protein kinase, ATP binding site [IPR017441]
| 13.985437
| 45.864078
| -0.192127
| 0.614786
| 6.814447
| 9.807663
| 0.86516
| 0.319854
|
RNA polymerases, subunit N, zinc binding site [IPR020789]
| 0.561404
| 1
| -0.159134
| 0.374512
| 0.496215
| 0
| 1.411436
| 0.292967
|
Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]
| 0.961165
| 1.956311
| -0.034402
| 0.524214
| 0.629722
| 0.204403
| 1.218174
| 0.332611
|
Serine/threonine dehydratase, pyridoxal-phosphate-binding site [IPR000634]
| 1
| 1
| -3.041924
| 0.049712
| 0
| 0
| 1.256697
| 0.095629
|
Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]
| 0.36165
| 1
| 0.396587
| 0.384768
| 0.480478
| 0
| 1.396681
| 0.297845
|
Transketolase binding site [IPR020826]
| 0.856796
| 1
| -1.519013
| 0.179865
| 0.350281
| 0
| 1.538704
| 0.256551
|
Ureohydrolase, manganese-binding site [IPR020855]
| 0.69112
| 1
| -0.861159
| 0.19127
| 0.462032
| 0
| 1.908953
| 0.241245
|
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
| 1
| 2
| 0.126401
| 0.899415
| 0
| 0
| 0
| 0
|
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
| 1
| 1
| -1.769635
| 0.076788
| 0
| 0
| 0
| 0
|
Adenylosuccinate synthase, GTP-binding site [IPR018220]
| 0
| 1
| 3.133539
| 0.001727
| 0
| 0
| 0
| 0
|
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
| 0
| 1
| 0.955076
| 0.339539
| 0
| 0
| 0
| 0
|
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
| 1
| 1
| -2.433359
| 0.014959
| 0
| 0
| 0
| 0
|
Beta tubulin, autoregulation binding site [IPR013838]
| 5
| 7
| 1.26408
| 0.206201
| 0
| 0
| 0
| 0
|
Copper centre Cu(A) [IPR001505]
| 0
| 1
| 1.184104
| 0.236372
| 0
| 0
| 0
| 0
|
Cytochrome b5, heme-binding site [IPR018506]
| 0
| 1
| 2.73641
| 0.006211
| 0
| 0
| 0
| 0
|
EF-Hand 1, calcium-binding site [IPR018247]
| 16
| 35
| -0.780643
| 0.435013
| 0
| 0
| 0
| 0
|
Hexokinase, binding site [IPR019807]
| 1
| 1
| -2.252226
| 0.024308
| 0
| 0
| 0
| 0
|
IQ motif, EF-hand binding site [IPR000048]
| 1
| 4
| 0.500199
| 0.616935
| 0
| 0
| 0
| 0
|
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
| 0
| 1
| 3.200911
| 0.00137
| 0
| 0
| 0
| 0
|
PPM-type phosphatase, divalent cation binding [IPR000222]
| 0
| 3
| 0.502287
| 0.615466
| 0
| 0
| 0
| 0
|
Peptidase M16, zinc-binding site [IPR001431]
| 1
| 4
| 0.456682
| 0.647899
| 0
| 0
| 0
| 0
|
Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]
| 0
| 1
| 2.451127
| 0.014241
| 0
| 0
| 0
| 0
|
Protein kinase, ATP binding site [IPR017441]
| 10
| 44
| -0.52605
| 0.598853
| 0
| 0
| 0
| 0
|
Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]
| 1
| 2
| -0.519169
| 0.603643
| 0
| 0
| 0
| 0
|
Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]
| 1
| 1
| -2.673952
| 0.007496
| 0
| 0
| 0
| 0
|
Ureohydrolase, manganese-binding site [IPR020855]
| 0
| 1
| 1.442008
| 0.1493
| 0
| 0
| 0
| 0
|
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
| 1
| 2
| 0.657883
| 0.510614
| 0
| 0
| 0
| 0
|
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
| 1
| 1
| -1.557136
| 0.119438
| 0
| 0
| 0
| 0
|
Adenylosuccinate synthase, GTP-binding site [IPR018220]
| 0
| 1
| 0.108606
| 0.913515
| 0
| 0
| 0
| 0
|
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
| 0
| 1
| 1.752775
| 0.079641
| 0
| 0
| 0
| 0
|
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
| 0
| 1
| 1.337191
| 0.18116
| 0
| 0
| 0
| 0
|
Beta tubulin, autoregulation binding site [IPR013838]
| 6
| 7
| -2.366762
| 0.017944
| 0
| 0
| 0
| 0
|
Copper centre Cu(A) [IPR001505]
| 1
| 1
| -1.86197
| 0.062607
| 0
| 0
| 0
| 0
|
Cytochrome b5, heme-binding site [IPR018506]
| 1
| 1
| -2.175208
| 0.029615
| 0
| 0
| 0
| 0
|
EF-Hand 1, calcium-binding site [IPR018247]
| 14
| 35
| -0.961228
| 0.336437
| 0
| 0
| 0
| 0
|
Hexokinase, binding site [IPR019807]
| 1
| 1
| -1.586122
| 0.112712
| 0
| 0
| 0
| 0
|
IQ motif, EF-hand binding site [IPR000048]
| 1
| 4
| 1.382951
| 0.16668
| 0
| 0
| 0
| 0
|
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
| 1
| 1
| -0.285241
| 0.775459
| 0
| 0
| 0
| 0
|
PPM-type phosphatase, divalent cation binding [IPR000222]
| 2
| 3
| 0.145334
| 0.884447
| 0
| 0
| 0
| 0
|
Peptidase M16, zinc-binding site [IPR001431]
| 3
| 4
| -0.512759
| 0.60812
| 0
| 0
| 0
| 0
|
Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]
| 0
| 1
| 0.277114
| 0.781692
| 0
| 0
| 0
| 0
|
Protein kinase, ATP binding site [IPR017441]
| 22
| 44
| 0.891809
| 0.372495
| 0
| 0
| 0
| 0
|
Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]
| 1
| 2
| 1.250894
| 0.210973
| 0
| 0
| 0
| 0
|
Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]
| 0
| 1
| 0.628995
| 0.529352
| 0
| 0
| 0
| 0
|
Ureohydrolase, manganese-binding site [IPR020855]
| 0
| 1
| 0.909834
| 0.36291
| 0
| 0
| 0
| 0
|
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
| 2
| 3
| 0.027159
| 0.261122
| 0
| 1
| 1.124157
| 0.01152
|
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
| 0
| 1
| 2.873747
| 0.01203
| 0
| 0
| 0.609599
| 0.011535
|
6-phosphogluconate-binding site [IPR006184]
| 0
| 1
| 4.105812
| 0.00004
| 0
| 0
| 0
| 0
|
AP endonuclease 1, binding site [IPR020847]
| 0
| 2
| 1.04453
| 0.29624
| 0
| 0
| 0
| 0
|
APOBEC/CMP deaminase, zinc-binding [IPR016192]
| 2
| 2
| -1.514517
| 0.129895
| 0
| 0
| 0
| 0
|
Aconitase family, 4Fe-4S cluster binding site [IPR018136]
| 1
| 2
| 2.186305
| 0.028793
| 0
| 0
| 0
| 0
|
Adenylosuccinate synthase, GTP-binding site [IPR018220]
| 0
| 1
| 2.365451
| 0.316459
| 0
| 0
| 1.887796
| 0.316438
|
Adrenodoxin, iron-sulphur binding site [IPR018298]
| 1
| 1
| -4.026739
| 0.000057
| 0
| 0
| 0
| 0
|
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
| 0.5
| 1.5
| -0.056448
| 0.070686
| 0.5
| 0.5
| 1.810363
| 0.008759
|
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
| 1
| 2
| -1.490467
| 0.236224
| 0
| 1
| 0.728271
| 0.209719
|
Aminotransferases, class-I, pyridoxal-phosphate-binding site [IPR004838]
| 1
| 2
| 3.479919
| 0.000502
| 0
| 0
| 0
| 0
|
Aryldialkylphosphatase, zinc-binding site [IPR017947]
| 1
| 1
| -3.203864
| 0.001356
| 0
| 0
| 0
| 0
|
Beta tubulin, autoregulation binding site [IPR013838]
| 5
| 7
| 1.679861
| 0.129045
| 0
| 0
| 0.470628
| 0.097528
|
Biotin-binding site [IPR001882]
| 3
| 4
| 3.044781
| 0.002328
| 0
| 0
| 0
| 0
|
Coenzyme A transferase binding site [IPR004163]
| 1
| 1
| -2.037971
| 0.041553
| 0
| 0
| 0
| 0
|
Copper centre Cu(A) [IPR001505]
| 0
| 1
| 3.124742
| 0.005125
| 0
| 0
| 0.549309
| 0.004886
|
Cytochrome b5, heme-binding site [IPR018506]
| 0
| 1
| 3.291229
| 0.00199
| 0
| 0
| 0.392884
| 0.001761
|
Cytochrome c oxidase, subunit I, copper-binding site [IPR023615]
| 1
| 1
| -4.246684
| 0.000022
| 0
| 0
| 0
| 0
|
Cytochrome c oxidase, subunit Vb, zinc binding site [IPR020893]
| 0
| 1
| 3.032319
| 0.002427
| 0
| 0
| 0
| 0
|
EF-Hand 1, calcium-binding site [IPR018247]
| 24
| 42
| 2.206094
| 0.03857
| 11
| 7
| 0.376695
| 0.02877
|
Fumarate reductase/succinate dehydrogenase, FAD-binding site [IPR003952]
| 0
| 1
| 4.322207
| 0.000015
| 0
| 0
| 0
| 0
|
Hexokinase, binding site [IPR019807]
| 0.5
| 1.5
| 2.593746
| 0.012926
| 0.5
| 0.5
| 0.305237
| 0.009182
|
IQ motif, EF-hand binding site [IPR000048]
| 4
| 12
| -0.428302
| 0.695832
| 2
| 8
| 0.428302
| 0.304168
|
Inositol monophosphatase, metal-binding site [IPR020583]
| 1
| 3
| -0.888926
| 0.374043
| 0
| 0
| 0
| 0
|
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
| 0.5
| 1
| -1.165741
| 0.20506
| 0.5
| 0
| 1.992224
| 0.203471
|
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