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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'score', 'overlap', 'setsize'}) and 8 missing columns ({'setsize_std', 'score_mean', 'pval_mean', 'setsize_mean', 'overlap_std', 'overlap_mean', 'pval_std', 'score_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_ptm/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 1dd86e3394113a9bf01a6be6e59739e9d5b56d98)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 809
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'score', 'overlap', 'setsize'}) and 8 missing columns ({'setsize_std', 'score_mean', 'pval_mean', 'setsize_mean', 'overlap_std', 'overlap_mean', 'pval_std', 'score_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_ptm/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 1dd86e3394113a9bf01a6be6e59739e9d5b56d98)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term string | overlap_mean float64 | setsize_mean float64 | score_mean float64 | pval_mean float64 | overlap_std float64 | setsize_std float64 | score_std float64 | pval_std float64 |
|---|---|---|---|---|---|---|---|---|
EGF-type aspartate/asparagine hydroxylation site [IPR000152] | 1.17037 | 2.466667 | -0.137392 | 0.390285 | 1.067181 | 1.516005 | 1.437469 | 0.314326 |
P-type ATPase, phosphorylation site [IPR018303] | 2.941748 | 6.145631 | 0.956772 | 0.273281 | 1.835863 | 1.459204 | 1.210253 | 0.294324 |
Phosphopantetheine attachment site [IPR006162] | 0.504854 | 1.053398 | 0.078675 | 0.353511 | 0.519032 | 0.224826 | 1.646027 | 0.314879 |
Rapamycin-insensitive companion of mTOR, phosphorylation-site [IPR029259] | 0.59375 | 1 | -0.309008 | 0.25998 | 0.491132 | 0 | 1.577171 | 0.254572 |
Translation elongation factor, IF5A, hypusine site [IPR019769] | 0.519417 | 1 | -0.173853 | 0.28117 | 0.499623 | 0 | 1.771257 | 0.275685 |
EGF-type aspartate/asparagine hydroxylation site [IPR000152] | 7 | 9 | 2.496244 | 0.012552 | 0 | 0 | 0 | 0 |
P-type ATPase, phosphorylation site [IPR018303] | 6 | 10 | -1.280499 | 0.20037 | 0 | 0 | 0 | 0 |
Phosphopantetheine attachment site [IPR006162] | 1 | 1 | -1.057912 | 0.290096 | 0 | 0 | 0 | 0 |
EGF-type aspartate/asparagine hydroxylation site [IPR000152] | 8 | 9 | 0.335367 | 0.737348 | 0 | 0 | 0 | 0 |
P-type ATPase, phosphorylation site [IPR018303] | 7 | 10 | -1.594988 | 0.110715 | 0 | 0 | 0 | 0 |
Phosphopantetheine attachment site [IPR006162] | 1 | 1 | -0.101703 | 0.918993 | 0 | 0 | 0 | 0 |
EGF-type aspartate/asparagine hydroxylation site [IPR000152] | 7.5 | 9.5 | -1.297209 | 0.351449 | 1.5 | 0.5 | 0.875284 | 0.321631 |
P-type ATPase, phosphorylation site [IPR018303] | 4.5 | 10.5 | 1.050206 | 0.397423 | 1.5 | 0.5 | 0.680042 | 0.313837 |
Phosphopantetheine attachment site [IPR006162] | 0.5 | 1.5 | -0.17529 | 0.518101 | 0.5 | 0.5 | 0.656259 | 0.112437 |
Rapamycin-insensitive companion of mTOR, phosphorylation-site [IPR029259] | 1 | 1 | -3.43429 | 0.000594 | 0 | 0 | 0 | 0 |
Translation elongation factor, IF5A, hypusine site [IPR019769] | 0 | 1 | 3.62816 | 0.000285 | 0 | 0 | 0 | 0 |
P-type ATPase, phosphorylation site [IPR018303] | null | null | null | null | null | null | null | null |
Translation elongation factor, IF5A, hypusine site [IPR019769] | null | null | null | null | null | null | null | null |
EGF-type aspartate/asparagine hydroxylation site [IPR000152] | null | null | null | null | null | null | null | null |
Phosphopantetheine attachment site [IPR006162] | null | null | null | null | null | null | null | null |
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