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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'score', 'overlap', 'setsize'}) and 8 missing columns ({'setsize_std', 'score_mean', 'pval_mean', 'setsize_mean', 'overlap_std', 'overlap_mean', 'pval_std', 'score_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_ptm/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 1dd86e3394113a9bf01a6be6e59739e9d5b56d98)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 809
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'score', 'overlap', 'setsize'}) and 8 missing columns ({'setsize_std', 'score_mean', 'pval_mean', 'setsize_mean', 'overlap_std', 'overlap_mean', 'pval_std', 'score_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_ptm/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 1dd86e3394113a9bf01a6be6e59739e9d5b56d98)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
EGF-type aspartate/asparagine hydroxylation site [IPR000152]
| 1.17037
| 2.466667
| -0.137392
| 0.390285
| 1.067181
| 1.516005
| 1.437469
| 0.314326
|
P-type ATPase, phosphorylation site [IPR018303]
| 2.941748
| 6.145631
| 0.956772
| 0.273281
| 1.835863
| 1.459204
| 1.210253
| 0.294324
|
Phosphopantetheine attachment site [IPR006162]
| 0.504854
| 1.053398
| 0.078675
| 0.353511
| 0.519032
| 0.224826
| 1.646027
| 0.314879
|
Rapamycin-insensitive companion of mTOR, phosphorylation-site [IPR029259]
| 0.59375
| 1
| -0.309008
| 0.25998
| 0.491132
| 0
| 1.577171
| 0.254572
|
Translation elongation factor, IF5A, hypusine site [IPR019769]
| 0.519417
| 1
| -0.173853
| 0.28117
| 0.499623
| 0
| 1.771257
| 0.275685
|
EGF-type aspartate/asparagine hydroxylation site [IPR000152]
| 7
| 9
| 2.496244
| 0.012552
| 0
| 0
| 0
| 0
|
P-type ATPase, phosphorylation site [IPR018303]
| 6
| 10
| -1.280499
| 0.20037
| 0
| 0
| 0
| 0
|
Phosphopantetheine attachment site [IPR006162]
| 1
| 1
| -1.057912
| 0.290096
| 0
| 0
| 0
| 0
|
EGF-type aspartate/asparagine hydroxylation site [IPR000152]
| 8
| 9
| 0.335367
| 0.737348
| 0
| 0
| 0
| 0
|
P-type ATPase, phosphorylation site [IPR018303]
| 7
| 10
| -1.594988
| 0.110715
| 0
| 0
| 0
| 0
|
Phosphopantetheine attachment site [IPR006162]
| 1
| 1
| -0.101703
| 0.918993
| 0
| 0
| 0
| 0
|
EGF-type aspartate/asparagine hydroxylation site [IPR000152]
| 7.5
| 9.5
| -1.297209
| 0.351449
| 1.5
| 0.5
| 0.875284
| 0.321631
|
P-type ATPase, phosphorylation site [IPR018303]
| 4.5
| 10.5
| 1.050206
| 0.397423
| 1.5
| 0.5
| 0.680042
| 0.313837
|
Phosphopantetheine attachment site [IPR006162]
| 0.5
| 1.5
| -0.17529
| 0.518101
| 0.5
| 0.5
| 0.656259
| 0.112437
|
Rapamycin-insensitive companion of mTOR, phosphorylation-site [IPR029259]
| 1
| 1
| -3.43429
| 0.000594
| 0
| 0
| 0
| 0
|
Translation elongation factor, IF5A, hypusine site [IPR019769]
| 0
| 1
| 3.62816
| 0.000285
| 0
| 0
| 0
| 0
|
P-type ATPase, phosphorylation site [IPR018303]
| null | null | null | null | null | null | null | null |
Translation elongation factor, IF5A, hypusine site [IPR019769]
| null | null | null | null | null | null | null | null |
EGF-type aspartate/asparagine hydroxylation site [IPR000152]
| null | null | null | null | null | null | null | null |
Phosphopantetheine attachment site [IPR006162]
| null | null | null | null | null | null | null | null |
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