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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'score_mean', 'overlap_mean', 'pval_std', 'score_std', 'overlap_std', 'setsize_std', 'pval_mean', 'setsize_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/msigdb_gomf/fragment/C001/C001_val_log2fc/harmon.tsv (at revision c0344693da60a7ab11e2e3cecdcda63521e916cd)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 812
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'score_mean', 'overlap_mean', 'pval_std', 'score_std', 'overlap_std', 'setsize_std', 'pval_mean', 'setsize_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/msigdb_gomf/fragment/C001/C001_val_log2fc/harmon.tsv (at revision c0344693da60a7ab11e2e3cecdcda63521e916cd)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
1 4 alpha oligoglucan phosphorylase activity
| 0.466019
| 3
| 0.940645
| 0.400106
| 0.751252
| 0
| 0.94189
| 0.317196
|
1 acylglycerophosphocholine o acyltransferase activity
| 0.868932
| 2.444175
| -0.027549
| 0.604773
| 0.738869
| 0.618713
| 0.976207
| 0.323621
|
1 alkyl 2 acetylglycerophosphocholine esterase activity
| 0.941032
| 1.653563
| -0.375864
| 0.426411
| 0.687882
| 0.569823
| 1.424937
| 0.333524
|
1 phosphatidylinositol 3 kinase activity
| 0.729443
| 1.429708
| -0.167756
| 0.386885
| 0.635809
| 0.560379
| 1.616824
| 0.33608
|
1 phosphatidylinositol 3 kinase regulator activity
| 0.346457
| 1
| 0.657059
| 0.217384
| 0.475841
| 0
| 2.043703
| 0.273116
|
1 phosphatidylinositol 4 kinase activity
| 0.834158
| 2.39604
| 0.272208
| 0.533637
| 0.727618
| 0.683312
| 1.067395
| 0.320261
|
1 phosphatidylinositol 4 phosphate 3 kinase activity
| 0.571429
| 1
| -0.276789
| 0.278264
| 0.494872
| 0
| 1.810131
| 0.285362
|
1 phosphatidylinositol 4 phosphate 5 kinase activity
| 0.382353
| 1.147059
| 0.736129
| 0.270053
| 0.543123
| 0.354165
| 1.72159
| 0.282059
|
1 phosphatidylinositol binding
| 0.929612
| 5.730583
| 0.585416
| 0.452723
| 1.291269
| 0.519276
| 0.861406
| 0.28745
|
14 3 3 protein binding
| 1.580563
| 3.769821
| -0.021401
| 0.506607
| 1.183013
| 1.624055
| 1.104863
| 0.321453
|
17 beta hydroxysteroid dehydrogenase nadplus activity
| 1.677184
| 4.230583
| -0.10866
| 0.55514
| 1.210859
| 0.559765
| 0.855011
| 0.290603
|
17 beta hydroxysteroid dehydrogenase nadpplus activity
| 0.851942
| 2.165049
| 0.565055
| 0.471653
| 0.710477
| 0.509084
| 1.192634
| 0.332484
|
2 acylglycerol 3 phosphate o acyltransferase activity
| 1.450122
| 3.192214
| 0.704481
| 0.381226
| 0.870897
| 0.785847
| 1.10517
| 0.31016
|
2 acylglycerol o acyltransferase activity
| 0.301775
| 1
| 0.839745
| 0.196526
| 0.459028
| 0
| 1.894748
| 0.251211
|
2 iron 2 sulfur cluster binding
| 3.06068
| 9.347087
| -0.159206
| 0.530045
| 2.262765
| 1.579116
| 0.894729
| 0.288383
|
2 oxoglutarate dependent dioxygenase activity
| 4.373786
| 15.529126
| 0.21543
| 0.601835
| 2.72993
| 2.710395
| 0.853977
| 0.314389
|
3 5 cyclic amp phosphodiesterase activity
| 0.482759
| 1
| 0.448279
| 0.08011
| 0.499703
| 0
| 2.514968
| 0.176985
|
3 5 cyclic gmp phosphodiesterase activity
| 0.482759
| 1
| 0.448279
| 0.08011
| 0.499703
| 0
| 2.514968
| 0.176985
|
3 5 dna helicase activity
| 3.514563
| 9.012136
| 0.041826
| 0.635909
| 2.759323
| 1.073669
| 0.750529
| 0.295528
|
3 5 exodeoxyribonuclease activity
| 2.48301
| 5.808252
| -0.324574
| 0.520446
| 1.514398
| 0.827107
| 0.855008
| 0.290966
|
3 5 exonuclease activity
| 10.223301
| 25.927184
| -0.661505
| 0.509843
| 4.744812
| 3.271611
| 0.775856
| 0.316536
|
3 beta hydroxy delta5 steroid dehydrogenase activity
| 0.650485
| 1
| -0.575457
| 0.249042
| 0.476817
| 0
| 1.841891
| 0.26759
|
3 hydroxyacyl coa dehydratase activity
| 0.529126
| 1.274272
| 0.626191
| 0.270392
| 0.592531
| 0.446147
| 1.803296
| 0.299452
|
3 hydroxyacyl coa dehydrogenase activity
| 2.415049
| 6.415049
| -0.030571
| 0.511218
| 1.666362
| 0.49273
| 0.957752
| 0.299782
|
3 phosphoadenosine 5 phosphosulfate binding
| 0.291971
| 1.160584
| 1.076062
| 0.178633
| 0.470449
| 0.486813
| 1.863364
| 0.262752
|
4 iron 4 sulfur cluster binding
| 5.966019
| 21.26699
| -0.347625
| 0.632576
| 3.148248
| 2.593228
| 0.627013
| 0.278824
|
5 3 dna helicase activity
| 2.055825
| 4.669903
| -0.186126
| 0.623201
| 1.278762
| 1.06021
| 0.7229
| 0.280873
|
5 3 exodeoxyribonuclease activity
| 0.682039
| 1.995146
| 1.140394
| 0.273774
| 0.529121
| 0.069504
| 1.269176
| 0.264787
|
5 3 exonuclease activity
| 1.575243
| 8.390777
| 0.576541
| 0.447085
| 1.380048
| 1.012165
| 0.911228
| 0.295873
|
5 deoxyribose 5 phosphate lyase activity
| 1.019417
| 2.043689
| -0.186667
| 0.573389
| 0.730482
| 0.204403
| 1.069341
| 0.333903
|
5alpha androstane 3beta 17beta diol dehydrogenase activity
| 0.630137
| 1
| -0.561548
| 0.210343
| 0.482767
| 0
| 2.033108
| 0.268511
|
5s rrna binding
| 3.548544
| 6.32767
| -0.703159
| 0.402036
| 1.657602
| 0.620766
| 0.943125
| 0.300835
|
7s rna binding
| 3.274272
| 6.402913
| -0.130816
| 0.625723
| 1.868237
| 0.559812
| 0.729159
| 0.286378
|
7sk snrna binding
| 2.325243
| 4.599515
| -0.443257
| 0.556474
| 1.320504
| 1.020327
| 0.77482
| 0.302983
|
Abc type glutathione s conjugate transporter activity
| 0.54902
| 1.392157
| 0.451006
| 0.266297
| 0.557084
| 0.541546
| 1.903906
| 0.305467
|
Abc type transporter activity
| 3.019417
| 7.652913
| 0.983125
| 0.236157
| 1.948266
| 2.35005
| 1.27438
| 0.258195
|
Abc type xenobiotic transporter activity
| 0.661728
| 1.903704
| 0.88437
| 0.248903
| 0.693278
| 0.827378
| 1.678878
| 0.283458
|
Acetyl coa c acetyltransferase activity
| 2.167476
| 5.650485
| -0.161283
| 0.4561
| 1.577638
| 0.598684
| 1.056798
| 0.288344
|
Acetyl coa c acyltransferase activity
| 3.048544
| 7.650485
| -0.297403
| 0.455705
| 2.093117
| 0.598684
| 1.027903
| 0.290084
|
Acetyl coa hydrolase activity
| 1.259709
| 2.747573
| -0.148055
| 0.655622
| 0.823224
| 0.44544
| 0.882663
| 0.31461
|
Acetylcholine receptor binding
| 0.73236
| 1.841849
| 0.164596
| 0.549355
| 0.640407
| 0.364882
| 1.216353
| 0.347836
|
Acetylesterase activity
| 0.235294
| 1
| 1.831218
| 0.105942
| 0.424183
| 0
| 1.717482
| 0.199265
|
Acetylgalactosaminyltransferase activity
| 1.17233
| 2.958738
| 0.701513
| 0.409398
| 0.887842
| 0.90078
| 1.102317
| 0.317156
|
Acetylglucosaminyltransferase activity
| 1.995146
| 5.055825
| -0.081022
| 0.323496
| 0.99268
| 1.011723
| 1.421729
| 0.292489
|
Acetyltransferase activity
| 7.609223
| 28.825243
| -0.386345
| 0.586653
| 3.844705
| 3.535334
| 0.801271
| 0.305332
|
Acid amino acid ligase activity
| 2.427184
| 5.407767
| -0.386457
| 0.525701
| 1.512742
| 1.042187
| 0.835222
| 0.292492
|
Acid phosphatase activity
| 0.987864
| 3.966019
| 0.905283
| 0.30688
| 0.85181
| 0.695904
| 1.07962
| 0.257905
|
Acid thiol ligase activity
| 4.31068
| 9.228155
| -0.577105
| 0.508161
| 2.533385
| 1.128356
| 0.809593
| 0.310593
|
Acidic amino acid transmembrane transporter activity
| 2.179612
| 3.898058
| 0.306808
| 0.487402
| 1.130672
| 0.578159
| 0.991477
| 0.303346
|
Actin binding
| 38.725728
| 112.15534
| -0.789901
| 0.496337
| 13.917755
| 10.402816
| 1.11879
| 0.359019
|
Actin filament binding
| 26.25
| 71.842233
| -0.930432
| 0.461371
| 9.867477
| 6.17361
| 1.166869
| 0.370467
|
Actin monomer binding
| 2.11165
| 4.682039
| -0.225282
| 0.532042
| 1.351791
| 0.846677
| 0.895193
| 0.303212
|
Actinin binding
| 2.570388
| 5.097087
| -0.243829
| 0.537623
| 1.472201
| 1.312853
| 0.918837
| 0.305432
|
Active ion transmembrane transporter activity
| 16.271845
| 41.711165
| 1.295722
| 0.326773
| 7.788084
| 5.097265
| 1.657111
| 0.363248
|
Active transmembrane transporter activity
| 26.354369
| 73.126214
| 1.313035
| 0.323957
| 11.878456
| 8.663538
| 1.887416
| 0.385169
|
Activin activated receptor activity
| 0.243243
| 1
| 1.159102
| 0.133928
| 0.429041
| 0
| 2.282593
| 0.231443
|
Activin binding
| 0.299663
| 1.107744
| 1.204726
| 0.136806
| 0.465402
| 0.310057
| 1.94661
| 0.206222
|
Activin receptor activity type i
| 0.243243
| 1
| 1.159102
| 0.133928
| 0.429041
| 0
| 2.282593
| 0.231443
|
Acyl carnitine transmembrane transporter activity
| 0.084951
| 1.01699
| 2.216378
| 0.06263
| 0.287383
| 0.129235
| 1.598021
| 0.152789
|
Acyl coa binding
| 4.012136
| 10.941748
| -0.089009
| 0.577097
| 2.546147
| 0.990981
| 0.843512
| 0.300643
|
Acyl coa dehydrogenase activity
| 3.148058
| 7.856796
| -0.641856
| 0.376336
| 2.083202
| 0.890281
| 1.082658
| 0.288711
|
Acyl coa oxidase activity
| 0.956311
| 2.713592
| 0.27559
| 0.517722
| 0.681257
| 0.672273
| 1.082161
| 0.31851
|
Acylglycerol lipase activity
| 0.958738
| 2.51699
| -0.990179
| 0.216676
| 0.503142
| 0.81085
| 1.509899
| 0.23715
|
Acylglycerol o acyltransferase activity
| 2.660194
| 6.820388
| 0.817494
| 0.273495
| 1.708365
| 1.51426
| 1.237211
| 0.265412
|
Acyltransferase activity
| 12.23301
| 53.677184
| 0.127464
| 0.594064
| 5.109393
| 5.98381
| 0.867847
| 0.323869
|
Acyltransferase acyl groups converted into alkyl on transfer
| 2.043689
| 3
| -1.081023
| 0.364379
| 0.742623
| 0
| 0.744788
| 0.277437
|
Adenosine deaminase activity
| 0.953883
| 2.669903
| 0.148141
| 0.510789
| 0.903236
| 0.500259
| 1.117689
| 0.333854
|
Adenosine receptor binding
| 0.333333
| 1
| 0.367721
| 0.194165
| 0.471405
| 0
| 1.875547
| 0.210809
|
Adenyl nucleotide binding
| 140.32767
| 465.88835
| -0.941152
| 0.438266
| 42.198927
| 44.399742
| 1.075891
| 0.330826
|
Adenyl nucleotide exchange factor activity
| 2.936893
| 7.140777
| -0.400246
| 0.527569
| 1.80638
| 1.286444
| 0.881172
| 0.313064
|
Adenylate cyclase activity
| 0
| 1
| 2.893154
| 0.027096
| 0
| 0
| 1.052861
| 0.031497
|
Adenylate cyclase binding
| 1.315534
| 2.650485
| -0.53775
| 0.467907
| 0.865998
| 0.671309
| 1.097008
| 0.322532
|
Adenylate kinase activity
| 1.849515
| 3.628641
| -0.355691
| 0.556036
| 1.205439
| 0.884305
| 0.874323
| 0.308583
|
Adenylyltransferase activity
| 3.17233
| 7.099515
| -0.256588
| 0.536227
| 1.923768
| 1.402944
| 0.879348
| 0.30124
|
Adp binding
| 7.07767
| 19.621359
| -0.387525
| 0.613259
| 3.766071
| 1.80273
| 0.663056
| 0.28499
|
Adp ribose diphosphatase activity
| 0.757282
| 1.779126
| 0.198845
| 0.537518
| 0.667789
| 0.414836
| 1.297054
| 0.360194
|
Adp transmembrane transporter activity
| 2.368932
| 4.201456
| 0.501994
| 0.348988
| 1.214718
| 0.418849
| 1.248361
| 0.30864
|
Adrenergic receptor binding
| 1.451456
| 4.18932
| -0.122289
| 0.44825
| 1.00246
| 1.062641
| 1.107085
| 0.300337
|
Alanine transmembrane transporter activity
| 0.342233
| 1
| 0.673384
| 0.251354
| 0.474457
| 0
| 1.742005
| 0.269372
|
Alcohol binding
| 5.708738
| 16.09466
| 1.097255
| 0.164241
| 2.336419
| 2.133476
| 1.72578
| 0.230642
|
Alcohol dehydrogenase activity zinc dependent
| 0.735437
| 1
| -0.922554
| 0.233315
| 0.4411
| 0
| 1.729576
| 0.265713
|
Alcohol dehydrogenase nad p plus activity
| 0.837379
| 1.264563
| -0.7715
| 0.32035
| 0.553244
| 0.4411
| 1.615357
| 0.326223
|
Alcohol dehydrogenase nadpplus activity
| 3.104369
| 7.084951
| -0.429145
| 0.484354
| 1.60741
| 1.014491
| 0.909127
| 0.298271
|
Aldehyde dehydrogenase nad p plus activity
| 2.73301
| 7.308252
| -0.583333
| 0.362301
| 1.615032
| 0.590894
| 1.09822
| 0.261925
|
Aldehyde lyase activity
| 1.992718
| 4.961165
| -0.194951
| 0.508718
| 1.346497
| 0.500918
| 0.912852
| 0.278913
|
Alditol nadpplus 1 oxidoreductase activity
| 2.203883
| 2.898058
| -0.749229
| 0.449637
| 0.857398
| 0.302572
| 0.93164
| 0.293484
|
Aldo keto reductase nadp activity
| 3.286408
| 8.050971
| -0.362742
| 0.504348
| 1.72658
| 1.065716
| 0.885022
| 0.294452
|
Alkali metal ion binding
| 2.25
| 6.092233
| -0.365004
| 0.573171
| 1.435718
| 1.003024
| 0.721267
| 0.279012
|
Alpha 2a adrenergic receptor binding
| 0.263158
| 1
| 0.519601
| 0.182134
| 0.440347
| 0
| 2.153474
| 0.205863
|
Alpha actinin binding
| 2.281553
| 4.002427
| -0.268302
| 0.544322
| 1.241808
| 0.93606
| 0.871318
| 0.295713
|
Alpha catenin binding
| 2.07767
| 4.012136
| -0.578579
| 0.453395
| 1.13368
| 0.541795
| 0.884406
| 0.288109
|
Alpha glucosidase activity
| 0.934466
| 2.98301
| 0.057645
| 0.557302
| 0.946674
| 0.129235
| 0.95144
| 0.312034
|
Alpha tubulin binding
| 2.614078
| 6.514563
| -0.277104
| 0.550618
| 1.767862
| 1.774217
| 0.838678
| 0.300216
|
Amide binding
| 22.521845
| 102.533981
| 0.87167
| 0.413447
| 7.596116
| 7.786365
| 1.251947
| 0.381563
|
Amide transmembrane transporter activity
| 1.978155
| 4.745146
| 1.408684
| 0.195467
| 1.339109
| 1.811667
| 1.00022
| 0.222334
|
Amidine lyase activity
| 1.754854
| 3.364078
| -0.524531
| 0.4705
| 1.024269
| 0.765437
| 1.029728
| 0.317492
|
Amino acid binding
| 5.058252
| 12.73301
| -0.51305
| 0.538768
| 2.900704
| 1.616534
| 0.793738
| 0.314137
|
Amino acid cation symporter activity
| 0.789203
| 1.910026
| 0.391188
| 0.382811
| 0.721885
| 0.791749
| 1.497819
| 0.325883
|
Amino acid proton symporter activity
| 0.465625
| 1
| 0.230301
| 0.290035
| 0.498817
| 0
| 1.752447
| 0.28427
|
Amino acid sodium symporter activity
| 0.564626
| 1.438776
| 0.762579
| 0.275192
| 0.584005
| 0.542098
| 1.808632
| 0.315024
|
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