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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'setsize', 'score', 'overlap'}) and 8 missing columns ({'overlap_std', 'overlap_mean', 'setsize_mean', 'score_mean', 'pval_std', 'score_std', 'setsize_std', 'pval_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/opencell_localization/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 47551984d47fc3b31eeb8904d86374379445fed8)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 810
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'setsize', 'score', 'overlap'}) and 8 missing columns ({'overlap_std', 'overlap_mean', 'setsize_mean', 'score_mean', 'pval_std', 'score_std', 'setsize_std', 'pval_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/opencell_localization/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 47551984d47fc3b31eeb8904d86374379445fed8)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
big_aggregates
| 9.621359
| 32.165049
| -0.371887
| 0.620934
| 5.377708
| 3.05165
| 0.727483
| 0.299297
|
cell_contact
| 7.223301
| 27.177184
| 0.001117
| 0.643666
| 4.69493
| 3.678218
| 0.782617
| 0.294397
|
centrosome
| 10.383495
| 33.002427
| 0.013906
| 0.676154
| 5.184791
| 3.528317
| 0.796959
| 0.303712
|
chromatin
| 34.101942
| 93.410194
| -0.805369
| 0.515781
| 12.190212
| 5.606358
| 1.201855
| 0.360666
|
cytoplasmic
| 124.09466
| 406.902913
| -0.412172
| 0.550694
| 46.164525
| 33.346668
| 1.722279
| 0.378655
|
cytoskeleton
| 11.393204
| 34.949029
| -0.03914
| 0.665145
| 5.600429
| 2.507237
| 0.779813
| 0.304065
|
er
| 29.17233
| 87.618932
| 1.335808
| 0.375747
| 13.465054
| 8.223394
| 2.042954
| 0.401065
|
focal_adhesions
| 2.885922
| 6.131068
| -0.321601
| 0.532557
| 1.740186
| 1.506396
| 0.857046
| 0.300864
|
golgi
| 15.631068
| 61.194175
| 0.66924
| 0.523534
| 6.922582
| 5.868806
| 1.07554
| 0.372925
|
membrane
| 16.393204
| 79.796117
| 0.036124
| 0.765883
| 7.711469
| 8.840671
| 0.588917
| 0.283422
|
mitochondria
| 4.441748
| 10.567961
| 1.193768
| 0.215979
| 2.254231
| 0.739156
| 1.401191
| 0.298009
|
nuclear_membrane
| 8.679612
| 30.934466
| -0.12928
| 0.693954
| 4.753565
| 1.657017
| 0.691215
| 0.289725
|
nuclear_punctae
| 23.907767
| 79.245146
| -0.48526
| 0.598518
| 8.910626
| 7.228624
| 0.805279
| 0.322259
|
nucleolus_fc_dfc
| 8.208738
| 21.946602
| -0.456237
| 0.580779
| 3.992119
| 2.53941
| 0.844605
| 0.312497
|
nucleolus_gc
| 36.907767
| 79.677184
| -1.342069
| 0.357322
| 12.290032
| 4.137816
| 1.460174
| 0.362752
|
nucleoplasm
| 107.980583
| 363.046117
| -0.509668
| 0.566849
| 36.632385
| 27.921793
| 1.106966
| 0.352538
|
vesicles
| 42.101942
| 169.662621
| 0.678963
| 0.600669
| 14.133871
| 18.745751
| 1.13513
| 0.392267
|
big_aggregates
| 3
| 18
| 1.717687
| 0.085854
| 0
| 0
| 0
| 0
|
cell_contact
| 5
| 21
| 1.52089
| 0.128287
| 0
| 0
| 0
| 0
|
centrosome
| 5
| 24
| 1.443578
| 0.148858
| 0
| 0
| 0
| 0
|
chromatin
| 4
| 41
| 1.023562
| 0.306042
| 0
| 0
| 0
| 0
|
cytoplasmic
| 65
| 253
| 0.828031
| 0.407653
| 0
| 0
| 0
| 0
|
cytoskeleton
| 1
| 22
| 0.058774
| 0.953132
| 0
| 0
| 0
| 0
|
er
| 46
| 93
| -5.280211
| 0
| 0
| 0
| 0
| 0
|
focal_adhesions
| 4
| 4
| -1.734414
| 0.082845
| 0
| 0
| 0
| 0
|
golgi
| 24
| 54
| -2.802993
| 0.005063
| 0
| 0
| 0
| 0
|
membrane
| 8
| 50
| 1.530465
| 0.125902
| 0
| 0
| 0
| 0
|
mitochondria
| 4
| 9
| -1.328259
| 0.184093
| 0
| 0
| 0
| 0
|
nuclear_membrane
| 8
| 22
| 0.723711
| 0.469243
| 0
| 0
| 0
| 0
|
nuclear_punctae
| 4
| 46
| 0.314394
| 0.753222
| 0
| 0
| 0
| 0
|
nucleolus_fc_dfc
| 9
| 10
| 0
| 1
| 0
| 0
| 0
| 0
|
nucleolus_gc
| 8
| 20
| 2.003884
| 0.045082
| 0
| 0
| 0
| 0
|
nucleoplasm
| 62
| 220
| 0.819148
| 0.412702
| 0
| 0
| 0
| 0
|
vesicles
| 54
| 157
| -2.147498
| 0.031754
| 0
| 0
| 0
| 0
|
big_aggregates
| 3
| 18
| 0.268987
| 0.78794
| 0
| 0
| 0
| 0
|
cell_contact
| 12
| 21
| 1.992707
| 0.046293
| 0
| 0
| 0
| 0
|
centrosome
| 13
| 24
| 0.03457
| 0.972423
| 0
| 0
| 0
| 0
|
chromatin
| 14
| 41
| 0.510696
| 0.609564
| 0
| 0
| 0
| 0
|
cytoplasmic
| 77
| 253
| 1.822187
| 0.068427
| 0
| 0
| 0
| 0
|
cytoskeleton
| 10
| 22
| 0.114296
| 0.909003
| 0
| 0
| 0
| 0
|
er
| 52
| 93
| -1.723247
| 0.084844
| 0
| 0
| 0
| 0
|
focal_adhesions
| 3
| 4
| 0.932527
| 0.351064
| 0
| 0
| 0
| 0
|
golgi
| 30
| 54
| -0.27225
| 0.78543
| 0
| 0
| 0
| 0
|
membrane
| 12
| 50
| -0.019974
| 0.984064
| 0
| 0
| 0
| 0
|
mitochondria
| 7
| 9
| -2.328174
| 0.019903
| 0
| 0
| 0
| 0
|
nuclear_membrane
| 11
| 22
| -0.017986
| 0.98565
| 0
| 0
| 0
| 0
|
nuclear_punctae
| 16
| 46
| 0.593572
| 0.552798
| 0
| 0
| 0
| 0
|
nucleolus_fc_dfc
| 1
| 10
| 0.447664
| 0.654396
| 0
| 0
| 0
| 0
|
nucleolus_gc
| 9
| 20
| 1.510619
| 0.130885
| 0
| 0
| 0
| 0
|
nucleoplasm
| 76
| 220
| 3.174944
| 0.001499
| 0
| 0
| 0
| 0
|
vesicles
| 64
| 157
| -2.193441
| 0.028276
| 0
| 0
| 0
| 0
|
big_aggregates
| 19.5
| 33
| 0.411477
| 0.485138
| 1.5
| 15
| 0.758767
| 0.243235
|
cell_contact
| 11.5
| 34.5
| -1.196844
| 0.470616
| 1.5
| 13.5
| 1.095594
| 0.448736
|
centrosome
| 12
| 39.5
| -0.404992
| 0.685697
| 2
| 15.5
| 0.037923
| 0.02787
|
chromatin
| 49
| 80
| 1.157892
| 0.047754
| 31
| 39
| 2.825269
| 0.047686
|
cytoplasmic
| 201
| 422
| 1.65052
| 0.2871
| 126
| 169
| 2.212561
| 0.286988
|
cytoskeleton
| 21
| 33.5
| 0.867628
| 0.312733
| 10
| 11.5
| 1.389888
| 0.288757
|
er
| 60.5
| 108.5
| 3.385779
| 0.009978
| 9.5
| 15.5
| 1.058444
| 0.009969
|
focal_adhesions
| 7.5
| 8
| 0.067691
| 0.652888
| 3.5
| 4
| 0.450786
| 0.048762
|
golgi
| 39.5
| 71
| 1.974124
| 0.048418
| 10.5
| 17
| 0.021163
| 0.002406
|
membrane
| 22
| 93.5
| 0.218129
| 0.831325
| 11
| 43.5
| 0.218129
| 0.168675
|
mitochondria
| 8
| 10.5
| 2.172025
| 0.03419
| 2
| 1.5
| 0.22924
| 0.017852
|
nuclear_membrane
| 15
| 29.5
| 1.627566
| 0.500567
| 5
| 7.5
| 1.627566
| 0.499433
|
nuclear_punctae
| 44.5
| 80
| 0.119116
| 0.023593
| 21.5
| 34
| 2.279622
| 0.007141
|
nucleolus_fc_dfc
| 11
| 19.5
| 0.900719
| 0.27889
| 7
| 9.5
| 1.510679
| 0.262998
|
nucleolus_gc
| 36.5
| 58
| 0.928772
| 0.003591
| 27.5
| 38
| 3.617294
| 0.003586
|
nucleoplasm
| 156.5
| 367.5
| 1.568169
| 0.199587
| 83.5
| 147.5
| 2.41139
| 0.199518
|
vesicles
| 42.5
| 221.5
| 0.661113
| 0.593046
| 11.5
| 64.5
| 0.661113
| 0.406954
|
mitochondria
| null | null | null | null | null | null | null | null |
focal_adhesions
| null | null | null | null | null | null | null | null |
nuclear_membrane
| null | null | null | null | null | null | null | null |
nucleolus_gc
| null | null | null | null | null | null | null | null |
big_aggregates
| null | null | null | null | null | null | null | null |
nucleolus_fc_dfc
| null | null | null | null | null | null | null | null |
centrosome
| null | null | null | null | null | null | null | null |
cytoplasmic
| null | null | null | null | null | null | null | null |
nucleoplasm
| null | null | null | null | null | null | null | null |
chromatin
| null | null | null | null | null | null | null | null |
nuclear_punctae
| null | null | null | null | null | null | null | null |
membrane
| null | null | null | null | null | null | null | null |
golgi
| null | null | null | null | null | null | null | null |
cell_contact
| null | null | null | null | null | null | null | null |
er
| null | null | null | null | null | null | null | null |
vesicles
| null | null | null | null | null | null | null | null |
cytoskeleton
| null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
null | null | null | null | null | null | null | null | null |
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