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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'overlap', 'score', 'setsize', 'pval'}) and 8 missing columns ({'overlap_mean', 'pval_mean', 'setsize_std', 'overlap_std', 'score_mean', 'score_std', 'setsize_mean', 'pval_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_protein_category/fragment/C001/C001_val_log2fc/harmon.tsv (at revision d17dbbe7d2cc9deac4729809fdb1d56570953d84)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 809
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'overlap', 'score', 'setsize', 'pval'}) and 8 missing columns ({'overlap_mean', 'pval_mean', 'setsize_std', 'overlap_std', 'score_mean', 'score_std', 'setsize_mean', 'pval_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_protein_category/fragment/C001/C001_val_log2fc/harmon.tsv (at revision d17dbbe7d2cc9deac4729809fdb1d56570953d84)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
Tbio
| 467.679612
| 2,434.25
| -0.541641
| 0.321514
| 119.736662
| 234.709556
| 4.704422
| 0.411663
|
Tchem
| 59.43932
| 318.521845
| -0.230533
| 0.615522
| 22.555944
| 30.164388
| 1.144812
| 0.379503
|
Tclin
| 19.366505
| 86.390777
| 0.939978
| 0.48051
| 6.659845
| 7.009024
| 0.974505
| 0.380646
|
Tdark
| 74.313107
| 324.373786
| 0.585966
| 0.657716
| 20.515718
| 49.369088
| 1.229855
| 0.401392
|
Tbio
| 446
| 1,895
| -1.915992
| 0.055366
| 0
| 0
| 0
| 0
|
Tchem
| 107
| 269
| 4.745517
| 0.000002
| 0
| 0
| 0
| 0
|
Tclin
| 32
| 84
| 0.772167
| 0.440016
| 0
| 0
| 0
| 0
|
Tdark
| 87
| 359
| -1.782359
| 0.074691
| 0
| 0
| 0
| 0
|
Tbio
| 467
| 1,895
| 1.053681
| 0.292029
| 0
| 0
| 0
| 0
|
Tchem
| 82
| 269
| -1.167549
| 0.242989
| 0
| 0
| 0
| 0
|
Tclin
| 34
| 84
| -0.045025
| 0.964088
| 0
| 0
| 0
| 0
|
Tdark
| 95
| 359
| 0
| 1
| 0
| 0
| 0
| 0
|
Tbio
| 1,062
| 2,988
| 4.332514
| 0.090943
| 582
| 1,093
| 5.667486
| 0.090943
|
Tchem
| 116
| 412
| -0.181156
| 0.858559
| 31
| 143
| 0.181156
| 0.141441
|
Tclin
| 47.5
| 106.5
| 1.48958
| 0.148198
| 14.5
| 22.5
| 0.246545
| 0.065657
|
Tdark
| 223
| 577.5
| -3.777132
| 0.5
| 141
| 218.5
| 3.777132
| 0.5
|
Tbio
| null | null | null | null | null | null | null | null |
Tclin
| null | null | null | null | null | null | null | null |
Tdark
| null | null | null | null | null | null | null | null |
Tchem
| null | null | null | null | null | null | null | null |
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