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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'overlap', 'score', 'setsize', 'pval'}) and 8 missing columns ({'overlap_mean', 'pval_mean', 'setsize_std', 'overlap_std', 'score_mean', 'score_std', 'setsize_mean', 'pval_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_protein_category/fragment/C001/C001_val_log2fc/harmon.tsv (at revision d17dbbe7d2cc9deac4729809fdb1d56570953d84)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 809
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'overlap', 'score', 'setsize', 'pval'}) and 8 missing columns ({'overlap_mean', 'pval_mean', 'setsize_std', 'overlap_std', 'score_mean', 'score_std', 'setsize_mean', 'pval_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_protein_category/fragment/C001/C001_val_log2fc/harmon.tsv (at revision d17dbbe7d2cc9deac4729809fdb1d56570953d84)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term string | overlap_mean float64 | setsize_mean float64 | score_mean float64 | pval_mean float64 | overlap_std float64 | setsize_std float64 | score_std float64 | pval_std float64 |
|---|---|---|---|---|---|---|---|---|
Tbio | 467.679612 | 2,434.25 | -0.541641 | 0.321514 | 119.736662 | 234.709556 | 4.704422 | 0.411663 |
Tchem | 59.43932 | 318.521845 | -0.230533 | 0.615522 | 22.555944 | 30.164388 | 1.144812 | 0.379503 |
Tclin | 19.366505 | 86.390777 | 0.939978 | 0.48051 | 6.659845 | 7.009024 | 0.974505 | 0.380646 |
Tdark | 74.313107 | 324.373786 | 0.585966 | 0.657716 | 20.515718 | 49.369088 | 1.229855 | 0.401392 |
Tbio | 446 | 1,895 | -1.915992 | 0.055366 | 0 | 0 | 0 | 0 |
Tchem | 107 | 269 | 4.745517 | 0.000002 | 0 | 0 | 0 | 0 |
Tclin | 32 | 84 | 0.772167 | 0.440016 | 0 | 0 | 0 | 0 |
Tdark | 87 | 359 | -1.782359 | 0.074691 | 0 | 0 | 0 | 0 |
Tbio | 467 | 1,895 | 1.053681 | 0.292029 | 0 | 0 | 0 | 0 |
Tchem | 82 | 269 | -1.167549 | 0.242989 | 0 | 0 | 0 | 0 |
Tclin | 34 | 84 | -0.045025 | 0.964088 | 0 | 0 | 0 | 0 |
Tdark | 95 | 359 | 0 | 1 | 0 | 0 | 0 | 0 |
Tbio | 1,062 | 2,988 | 4.332514 | 0.090943 | 582 | 1,093 | 5.667486 | 0.090943 |
Tchem | 116 | 412 | -0.181156 | 0.858559 | 31 | 143 | 0.181156 | 0.141441 |
Tclin | 47.5 | 106.5 | 1.48958 | 0.148198 | 14.5 | 22.5 | 0.246545 | 0.065657 |
Tdark | 223 | 577.5 | -3.777132 | 0.5 | 141 | 218.5 | 3.777132 | 0.5 |
Tbio | null | null | null | null | null | null | null | null |
Tclin | null | null | null | null | null | null | null | null |
Tdark | null | null | null | null | null | null | null | null |
Tchem | null | null | null | null | null | null | null | null |
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