Datasets:

---

linbc20

/

plinder_rmsd_split_after_20210930_alltest

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'id_to_cluster', 'cluster_to_ids'}) and 2 missing columns ({'sequences', 'name'}).

This happened while the json dataset builder was generating data using

hf://datasets/linbc20/plinder_rmsd_split_after_20210930_alltest/input.mapping.json (at revision bd1e39050bb348d9e88e41c473a5614b164c12a6), [/tmp/hf-datasets-cache/medium/datasets/43668243553565-config-parquet-and-info-linbc20-plinder_rmsd_spli-f850acae/hub/datasets--linbc20--plinder_rmsd_split_after_20210930_alltest/snapshots/bd1e39050bb348d9e88e41c473a5614b164c12a6/input.json (origin=hf://datasets/linbc20/plinder_rmsd_split_after_20210930_alltest@bd1e39050bb348d9e88e41c473a5614b164c12a6/input.json), /tmp/hf-datasets-cache/medium/datasets/43668243553565-config-parquet-and-info-linbc20-plinder_rmsd_spli-f850acae/hub/datasets--linbc20--plinder_rmsd_split_after_20210930_alltest/snapshots/bd1e39050bb348d9e88e41c473a5614b164c12a6/input.mapping.json (origin=hf://datasets/linbc20/plinder_rmsd_split_after_20210930_alltest@bd1e39050bb348d9e88e41c473a5614b164c12a6/input.mapping.json)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              id_to_cluster: struct<5sc8__1__1.A__1.I: string, 5sc8__1__1.A__1.K: string, 5sc8__1__1.B__1.N: string, 5sc8__1__1.C (... 57791 chars omitted)
                child 0, 5sc8__1__1.A__1.I: string
                child 1, 5sc8__1__1.A__1.K: string
                child 2, 5sc8__1__1.B__1.N: string
                child 3, 5sc8__1__1.C__1.R: string
                child 4, 5sc8__1__1.C__1.T: string
                child 5, 5sc8__1__1.D__1.W: string
                child 6, 5sc8__2__1.E__1.AA: string
                child 7, 5sc8__2__1.E__1.CA: string
                child 8, 5sc8__2__1.F__1.FA: string
                child 9, 5sc8__2__1.F__1.HA: string
                child 10, 5sc8__2__1.G__1.KA: string
                child 11, 5sc8__2__1.H__1.OA: string
                child 12, 5sc9__1__1.A__1.I: string
                child 13, 5sc9__1__1.B__1.M: string
                child 14, 5sc9__1__1.C__1.P: string
                child 15, 5sc9__1__1.D__1.U: string
                child 16, 5sc9__2__1.E__1.AA: string
                child 17, 5sc9__2__1.E__1.Y: string
                child 18, 5sc9__2__1.F__1.CA: string
                child 19, 5sc9__2__1.G__1.HA: string
                child 20, 5sc9__2__1.H__1.LA: string
                child 21, 5sca__1__1.A__1.I: string
                child 22, 5sca__1__1.A__1.K: string
                child 23, 5sca__1__1.B__1.N: string
                child 24, 5sca__1__1.C__1.R: string
                child 25, 5sca__1__1.D__1.W: string
                child 26, 5sca__2__1.E__1.AA: string
                child 27, 5sca__2__1.E__1.CA: string
                child 28, 5sca__2__1.F__1.FA: string
                child 29, 5sca__2__1.G__1.KA: string
                child 30, 5sca__2__1.H__1.OA: string
                child 31, 5scb__1__1.A__1.I: string
                child 32, 5scb__1__1.A__1.K: string
                child 33, 5scb__1__1.B__1.N: string
                child 34, 5scb__1__1.B__1.P: string
                child 35, 5scb__1__1.
              ...
                child 391, 8u94__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 392, 8uac__1__1.A__1.C: list<item: string>
                    child 0, item: string
                child 393, 8ucx__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 394, 8ug1__1__1.B__1.H: list<item: string>
                    child 0, item: string
                child 395, 8uwp__1__1.A__1.C: list<item: string>
                    child 0, item: string
                child 396, 8uzn__1__1.A__1.E: list<item: string>
                    child 0, item: string
                child 397, 8v1p__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 398, 8w4s__1__1.A__1.D: list<item: string>
                    child 0, item: string
                child 399, 8wbv__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 400, 8wdx__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 401, 8wtf__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 402, 8wtq__1__1.A__1.C: list<item: string>
                    child 0, item: string
                child 403, 8wzq__1__1.A__1.C: list<item: string>
                    child 0, item: string
                child 404, 8x5k__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 405, 8xox__1__1.A__1.B: list<item: string>
                    child 0, item: string
                child 406, 8xrv__1__1.A__1.G: list<item: string>
                    child 0, item: string
                child 407, 8yru__1__1.A__1.C: list<item: string>
                    child 0, item: string
                child 408, 8yyn__1__1.A__1.C: list<item: string>
                    child 0, item: string
                child 409, 9f4e__1__1.A__1.B: list<item: string>
                    child 0, item: string
              to
              {'sequences': List({'ligand': {'count': Value('int64'), 'ligand': Value('string')}, 'proteinChain': {'count': Value('int64'), 'modifications': List({'ptmPosition': Value('int64'), 'ptmType': Value('string')}), 'sequence': Value('string')}}), 'name': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'id_to_cluster', 'cluster_to_ids'}) and 2 missing columns ({'sequences', 'name'}).
              
              This happened while the json dataset builder was generating data using
              
              hf://datasets/linbc20/plinder_rmsd_split_after_20210930_alltest/input.mapping.json (at revision bd1e39050bb348d9e88e41c473a5614b164c12a6), [/tmp/hf-datasets-cache/medium/datasets/43668243553565-config-parquet-and-info-linbc20-plinder_rmsd_spli-f850acae/hub/datasets--linbc20--plinder_rmsd_split_after_20210930_alltest/snapshots/bd1e39050bb348d9e88e41c473a5614b164c12a6/input.json (origin=hf://datasets/linbc20/plinder_rmsd_split_after_20210930_alltest@bd1e39050bb348d9e88e41c473a5614b164c12a6/input.json), /tmp/hf-datasets-cache/medium/datasets/43668243553565-config-parquet-and-info-linbc20-plinder_rmsd_spli-f850acae/hub/datasets--linbc20--plinder_rmsd_split_after_20210930_alltest/snapshots/bd1e39050bb348d9e88e41c473a5614b164c12a6/input.mapping.json (origin=hf://datasets/linbc20/plinder_rmsd_split_after_20210930_alltest@bd1e39050bb348d9e88e41c473a5614b164c12a6/input.mapping.json)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)