Upload tasks/somatic-variant-calling/Dockerfile with huggingface_hub
Browse files
tasks/somatic-variant-calling/Dockerfile
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
FROM condaforge/mambaforge:latest
|
| 2 |
+
COPY environment.yml /tmp/environment.yml
|
| 3 |
+
RUN mamba env create -f /tmp/environment.yml && mamba clean -afy
|
| 4 |
+
SHELL ["mamba", "run", "-n", "somatic-variant-calling", "/bin/bash", "-c"]
|
| 5 |
+
WORKDIR /work
|
| 6 |
+
COPY . /work/
|
| 7 |
+
RUN chmod +x run_script.sh
|
| 8 |
+
CMD ["mamba", "run", "-n", "somatic-variant-calling", "bash", "run_script.sh"]
|