| { | |
| "artifacts": { | |
| "global_fasta": "artifacts\\external\\temporal-global-family-audit\\global-accepted-components.fasta", | |
| "global_fasta_sha256": "0e631ed695ec3bd9fcd17fc3b91b67cc26b21a5980eb5377bfce40e53f42695b", | |
| "mapping_manifest": "artifacts\\external\\temporal-global-family-audit\\global-accepted-mapping.csv", | |
| "mapping_manifest_sha256": "54226ec20c18f296b789d20fa52642174317dfbd93492428ad3b9ae3aefedf48" | |
| }, | |
| "blockers": [ | |
| "capped records 192 < required 300", | |
| "global families 25 < required 30" | |
| ], | |
| "claim_boundary": "Readiness audit only; no model predictions or scores were generated.", | |
| "counts": { | |
| "accepted_sources": 18, | |
| "excluded_or_unresolved_sources": 0, | |
| "global_families": 25, | |
| "mapped_component_sequences": 203, | |
| "mapped_records_before_cap": 192, | |
| "records_after_global_family_cap": 192, | |
| "substrates_after_global_family_cap": 54 | |
| }, | |
| "family_record_counts_before_cap": { | |
| "family-0001": 8, | |
| "family-0002": 8, | |
| "family-0003": 4, | |
| "family-0004": 4, | |
| "family-0005": 15, | |
| "family-0006": 6, | |
| "family-0007": 3, | |
| "family-0008": 4, | |
| "family-0009": 2, | |
| "family-0010": 19, | |
| "family-0011": 4, | |
| "family-0012": 3, | |
| "family-0013": 2, | |
| "family-0014": 2, | |
| "family-0015": 8, | |
| "family-0016": 1, | |
| "family-0017": 1, | |
| "family-0018": 20, | |
| "family-0019": 16, | |
| "family-0020": 8, | |
| "family-0021": 5, | |
| "family-0022": 4, | |
| "family-0023": 18, | |
| "family-0024": 20, | |
| "family-0025": 7 | |
| }, | |
| "generated_on": "2026-07-27", | |
| "mmseqs": { | |
| "cluster_tsv": "artifacts\\external\\temporal-global-family-audit\\mmseqs\\proteins_cluster.tsv", | |
| "cluster_tsv_sha256": "74fff00b5c9d75022d4826cefe5ed918b81f6187bda288e4b3716ea98c1218db", | |
| "executable": "wsl:Ubuntu-24.04:<redacted-local-path>", | |
| "observed_version": "5d152c612b6ad2a56f657b7a02c127eceaea2a75", | |
| "required_version": "5d152c612b6ad2a56f657b7a02c127eceaea2a75" | |
| }, | |
| "parameters": { | |
| "cap_order": "source_id lexical order, then accepted CSV row order", | |
| "cap_uses_labels": false, | |
| "coverage": 0.8, | |
| "coverage_mode": 0, | |
| "maximum_records_per_family": 20, | |
| "min_identity": 0.3, | |
| "multicomponent_rule": "records are connected when any components share a global MMseqs cluster" | |
| }, | |
| "readiness_gate_passes": false, | |
| "schema_version": 1, | |
| "sources": [ | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 8, | |
| "mapped_records": 8, | |
| "mapping_columns": [ | |
| "component_sequence_ids" | |
| ], | |
| "source_id": "biostudies-S-EPMC10795190" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 8, | |
| "mapped_records": 8, | |
| "mapping_columns": [ | |
| "chain_a_sequence_id", | |
| "chain_b_sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC11760959" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 4, | |
| "mapped_records": 4, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC11955521" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 4, | |
| "mapped_records": 4, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC12412097" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 15, | |
| "mapped_records": 15, | |
| "mapping_columns": [ | |
| "uniprot_accession", | |
| "variant" | |
| ], | |
| "source_id": "biostudies-S-EPMC12645435" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 9, | |
| "mapped_records": 9, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC12667214" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 4, | |
| "mapped_records": 4, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC12751057" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 2, | |
| "mapped_records": 2, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC12781114" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 19, | |
| "mapped_records": 19, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "biostudies-S-EPMC13033379" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 4, | |
| "mapped_records": 4, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "edmond-S0HJ48" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 17, | |
| "mapped_records": 17, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC10520331" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 20, | |
| "mapped_records": 20, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC11656708" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 24, | |
| "mapped_records": 24, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC11659886" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 5, | |
| "mapped_records": 5, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC12284513" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 4, | |
| "mapped_records": 4, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC12362431" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 18, | |
| "mapped_records": 18, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC12444516" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 20, | |
| "mapped_records": 20, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "europepmc-PMC12838360" | |
| }, | |
| { | |
| "blockers": [], | |
| "finalized_accepted_records": 7, | |
| "mapped_records": 7, | |
| "mapping_columns": [ | |
| "sequence_id" | |
| ], | |
| "source_id": "zenodo-14055918" | |
| } | |
| ] | |
| } | |