keyword stringclasses 7
values | repo_name stringlengths 8 98 | file_path stringlengths 4 244 | file_extension stringclasses 29
values | file_size int64 0 84.1M | line_count int64 0 1.6M | content stringlengths 1 84.1M ⌀ | language stringclasses 14
values |
|---|---|---|---|---|---|---|---|
3D | mcellteam/mcell | appveyor_windows/mdllex.c | .c | 162,248 | 4,636 | #line 2 "/home/jczech/mcell/build/deps/mdllex.c"
#line 4 "/home/jczech/mcell/build/deps/mdllex.c"
#define YY_INT_ALIGNED long int
/* A lexical scanner generated by flex */
#define FLEX_SCANNER
#define YY_FLEX_MAJOR_VERSION 2
#define YY_FLEX_MINOR_VERSION 6
#define YY_FLEX_SUBMINOR_VERSION 0
#if YY_FLEX_SUBMINOR_VE... | C |
3D | mcellteam/mcell | appveyor_windows/debug_version.h | .h | 1,593 | 42 | /****************************************************************
* This file is automatically generated. Do not edit it.
* version.h updated at Fri Jul 17 15:14:05 PDT 2020 on ntbhusar by ahusar
****************************************************************/
/* Program version info */
#define MCELL_VERSION "3.5... | Unknown |
3D | mcellteam/mcell | libmcell/replace_in_all_files.sh | .sh | 123 | 3 | #!/bin/bash
# this is an auxiliary script used e.g. when API changes
find ./ -type f -exec sed -i "s/double/double/g" {} \; | Shell |
3D | mcellteam/mcell | libmcell/documentation/build.sh | .sh | 164 | 7 | #!/bin/bash
sphinx-build -M html . build/
if [ "$1" == "-u" ]; then
rsync -r build/html/* huxley.snl.salk.edu:/home/ahusar/public_html/mcell4_documentation
fi
| Shell |
3D | mcellteam/mcell | libmcell/documentation/conf.py | .py | 2,114 | 63 | # Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
# -- Path setup --------------------------------------------------------------
# If ex... | Python |
3D | mcellteam/mcell | libmcell/api/shared_structs.h | .h | 2,939 | 100 | /******************************************************************************
*
* Copyright (C) 2020-2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
******... | Unknown |
3D | mcellteam/mcell | libmcell/api/elementary_molecule.cpp | .cpp | 1,891 | 81 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/checkpoint_signals.h | .h | 1,128 | 45 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/python_export_utils.cpp | .cpp | 4,922 | 208 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/count.h | .h | 1,123 | 51 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/bindings.cpp | .cpp | 8,554 | 267 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/python_exporter.h | .h | 1,840 | 66 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/component_type.h | .h | 1,398 | 49 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/notifications.h | .h | 705 | 30 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/release_pattern.h | .h | 1,001 | 39 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/introspection.h | .h | 2,083 | 69 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/bng_converter.h | .h | 1,808 | 69 | /******************************************************************************
*
* Copyright (C) 2020-2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
******... | Unknown |
3D | mcellteam/mcell | libmcell/api/mol_wall_hit_info.h | .h | 988 | 41 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/wall.cpp | .cpp | 916 | 37 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/observables.cpp | .cpp | 5,828 | 202 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/component.h | .h | 898 | 37 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/subsystem.cpp | .cpp | 6,105 | 181 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/geometry_object.cpp | .cpp | 3,427 | 113 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/python_export_utils.h | .h | 8,713 | 268 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/compartment_utils.cpp | .cpp | 5,483 | 161 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/mcell4_converter.cpp | .cpp | 68,461 | 1,865 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/surface_region.h | .h | 1,220 | 53 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/subsystem.h | .h | 2,825 | 102 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/api_utils.cpp | .cpp | 2,233 | 87 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/molecule_release_info.h | .h | 932 | 36 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/wall_wall_hit_info.h | .h | 741 | 30 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/surface_class.h | .h | 1,750 | 66 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/component_type.cpp | .cpp | 1,708 | 73 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/geometry_object.h | .h | 3,554 | 109 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/reaction_info.h | .h | 1,568 | 64 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/rng_state.cpp | .cpp | 935 | 37 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/chkpt_surf_mol.h | .h | 1,233 | 54 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/color.cpp | .cpp | 1,669 | 62 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/release_site.h | .h | 5,077 | 139 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/wall.h | .h | 732 | 33 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/run_utils.cpp | .cpp | 2,325 | 96 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/model.cpp | .cpp | 23,576 | 723 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/initial_surface_release.h | .h | 1,227 | 44 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/surface_property.h | .h | 3,443 | 91 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/checkpoint_signals.cpp | .cpp | 3,999 | 144 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/globals.cpp | .cpp | 1,076 | 31 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/python_export_constants.h | .h | 6,664 | 178 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/surface_class.cpp | .cpp | 930 | 42 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/observables.h | .h | 2,506 | 87 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/count.cpp | .cpp | 2,261 | 82 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/species.h | .h | 6,638 | 183 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/elementary_molecule_type.h | .h | 2,257 | 83 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/mcell4_converter.h | .h | 5,089 | 169 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/elementary_molecule.h | .h | 940 | 36 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/reaction_rule.h | .h | 3,422 | 120 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/molecule.cpp | .cpp | 862 | 36 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/api_common.h | .h | 7,004 | 273 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/python_exporter.cpp | .cpp | 13,796 | 413 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/instantiation.cpp | .cpp | 7,251 | 228 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/species.cpp | .cpp | 2,448 | 92 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/complex.cpp | .cpp | 12,421 | 377 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/base_introspection_class.h | .h | 1,771 | 62 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/bngl_utils.cpp | .cpp | 1,039 | 44 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/globals.h | .h | 1,020 | 41 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/pybind11_stl_include.h | .h | 874 | 34 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/introspection.cpp | .cpp | 8,422 | 241 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/mcell.h | .h | 1,833 | 71 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/chkpt_vol_mol.h | .h | 1,111 | 51 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/base_data_class.h | .h | 2,679 | 92 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/warnings.h | .h | 1,021 | 38 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/base_export_class.h | .h | 1,761 | 65 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/chkpt_vol_mol.cpp | .cpp | 919 | 37 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/rng_state.h | .h | 1,120 | 44 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/count_term.h | .h | 4,219 | 122 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/reaction_rule.cpp | .cpp | 4,942 | 187 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/region.h | .h | 2,780 | 88 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/molecule.h | .h | 729 | 33 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/bng_converter.cpp | .cpp | 8,140 | 238 | /******************************************************************************
*
* Copyright (C) 2020-2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
******... | C++ |
3D | mcellteam/mcell | libmcell/api/chkpt_surf_mol.cpp | .cpp | 1,450 | 52 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/compartment_utils.h | .h | 1,482 | 64 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/api_utils.h | .h | 4,439 | 142 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/elementary_molecule_type.cpp | .cpp | 3,406 | 122 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/callbacks.h | .h | 5,224 | 186 | /******************************************************************************
*
* Copyright (C) 2020-2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
******... | Unknown |
3D | mcellteam/mcell | libmcell/api/callbacks.cpp | .cpp | 6,735 | 187 | /******************************************************************************
*
* Copyright (C) 2020-2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
******... | C++ |
3D | mcellteam/mcell | libmcell/api/api_config.h | .h | 1,361 | 48 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/color.h | .h | 1,346 | 61 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/python_export_constants.cpp | .cpp | 4,758 | 126 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/model.h | .h | 5,856 | 180 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/component.cpp | .cpp | 1,148 | 60 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/geometry_utils.cpp | .cpp | 9,335 | 341 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/viz_output.h | .h | 916 | 39 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/data_utils.cpp | .cpp | 2,550 | 102 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
*******************... | C++ |
3D | mcellteam/mcell | libmcell/api/base_chkpt_mol.h | .h | 1,605 | 65 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/complex.h | .h | 4,242 | 141 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/exports.cpp | .cpp | 390 | 23 | // temporary workaround,
// I was unable to figure out so far how to make cmake link a static library to
// a shared one and export its symbols
extern "C" {
void PyInit_mcell();
}
// exported functions
static volatile int x = 0;
class UseSymbol {
public:
UseSymbol() {
if (x != 0) {
// make the symbol be ... | C++ |
3D | mcellteam/mcell | libmcell/api/libmcell_dummy.cpp | .cpp | 2,076 | 75 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/api/bindings.h | .h | 665 | 27 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/api/instantiation.h | .h | 2,423 | 84 | /******************************************************************************
*
* Copyright (C) 2020 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
3D | mcellteam/mcell | libmcell/generated/gen_component_type.cpp | .cpp | 6,098 | 154 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | C++ |
3D | mcellteam/mcell | libmcell/generated/gen_vectors_make_opaque.h | .h | 2,660 | 69 | /******************************************************************************
*
* Copyright (C) 2021 by
* The Salk Institute for Biological Studies
*
* Use of this source code is governed by an MIT-style
* license that can be found in the LICENSE file or at
* https://opensource.org/licenses/MIT.
*
***********... | Unknown |
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