Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens
|
ecDNA
|
ec_hsa_01
|
hg19
|
chr1:148175322-148195932
|
chr1
| 148,175,322
| 148,195,932
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:33019431-33040041,chr7:54365673-56353955,chr7:75217045-75699936.
|
Homo sapiens
|
ecDNA
|
ec_hsa_02
|
hg19
|
chr1:148175386-148295895
|
chr1
| 148,175,386
| 148,295,895
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54175400-55741898.
|
Homo sapiens
|
ecDNA
|
ec_hsa_03
|
hg19
|
chr1:153280226-185860842
|
chr1
| 153,280,226
| 185,860,842
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
ABL2,ARHGEF2,CKS1B,DUSP12,ETV3,FAM189B,FDPS,HAX1,INTS3,MUC1,NTRK1,PBX1,RIT1,S100A4,S100A7,S100A8,XCL1,YY1AP1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_04
|
hg19
|
chr1:154210485-154211045
|
chr1
| 154,210,485
| 154,211,045
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:98554714-98555274,chr7:53437686-57065330,chr7:57477300-57497860,chr7:65160992-65361551,chrX:107240015-107240575.
|
Homo sapiens
|
ecDNA
|
ec_hsa_05
|
hg19
|
chr1:203177968-204957662
|
chr1
| 203,177,968
| 204,957,662
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
MDM4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6382);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:54345291-55107618,chr4:55629356-55629856,chr6:100688972-100689472,chrX:11692808-11693308,chrX:30639531-30640031.
|
Homo sapiens
|
ecDNA
|
ec_hsa_06
|
hg19
|
chr1:203360625-204898652
|
chr1
| 203,360,625
| 204,898,652
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
AmpliconArchitect
|
Not Available
|
MDM4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chrX:11692735-11693266
|
Homo sapiens
|
ecDNA
|
ec_hsa_07
|
hg19
|
chr1:209751070-222324873
|
chr1
| 209,751,070
| 222,324,873
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
ATF3,INTS7
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_08
|
hg19
|
chr1:224238062-224822794
|
chr1
| 224,238,062
| 224,822,794
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_09
|
hg19
|
chr1:238182639-238183163
|
chr1
| 238,182,639
| 238,183,163
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390.
|
Homo sapiens
|
ecDNA
|
ec_hsa_10
|
hg19
|
chr1:78748084-78748614
|
chr1
| 78,748,084
| 78,748,614
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174084-111384613,chr8:127137778-131068628,chr11:93361756-93362286,chrX:116866132-116866662.
|
Homo sapiens
|
ecDNA
|
ec_hsa_11
|
hg19
|
chr1:78748090-78748614
|
chr1
| 78,748,090
| 78,748,614
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390.
|
Homo sapiens
|
ecDNA
|
ec_hsa_12
|
hg19
|
chr1:78748126-78748609
|
chr1
| 78,748,126
| 78,748,609
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174081-111384563,chr8:127493240-131068628,chr11:93361795-93362278,chr20:54188605-54189088,chrX:23578881-23579364.
|
Homo sapiens
|
ecDNA
|
ec_hsa_13
|
hg19
|
chr10:22460044-29188375
|
chr10
| 22,460,044
| 29,188,375
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
BMI1,RAB18
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:Astrocytoma
|
Homo sapiens
|
ecDNA
|
ec_hsa_14
|
hg19
|
chr10:484053-31076181
|
chr10
| 484,053
| 31,076,181
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
BMI1,CAMK1D,KLF6,MAP3K8,NET1,RAB18,VIM
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:Oligodendroglioma
|
Homo sapiens
|
ecDNA
|
ec_hsa_15
|
hg19
|
chr11:25517143-121336618
|
chr11
| 25,517,143
| 121,336,618
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
BCL9L,BIRC2,BIRC3,CBL,CCND1,CRYAB,CTTN,DDB2,DDX6,FGF3,FGF4,FOSL1,GAB2,INPPL1,INTS4,INTS5,KDM2A,KMT2A,LMO2,MACROD1,MALAT1,MAML2,MMP12,NEAT1,PAK1,RBM14,RSF1,SLC3A2,SPI1,TRAF6,TREH,WT1,YAP1,ZBTB16
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_16
|
hg19
|
chr11:26795187-43284531
|
chr11
| 26,795,187
| 43,284,531
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
LMO2,TRAF6,WT1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:Oligoastrocytoma
|
Homo sapiens
|
ecDNA
|
ec_hsa_17
|
hg19
|
chr11:77902914-119760408
|
chr11
| 77,902,914
| 119,760,408
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
BCL9L,BIRC2,BIRC3,CBL,CRYAB,DDX6,GAB2,KMT2A,MAML2,MMP12,TREH,YAP1,ZBTB16
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_18
|
hg19
|
chr11:9113266-102459139
|
chr11
| 9,113,266
| 102,459,139
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
BIRC2,BIRC3,CCND1,CTTN,DDB2,FGF3,FGF4,FOSL1,GAB2,INPPL1,INTS4,INTS5,KDM2A,LMO2,MACROD1,MALAT1,MAML2,NEAT1,PAK1,RBM14,RRAS2,RSF1,SLC3A2,SPI1,SWAP70,TRAF6,WT1,YAP1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_19
|
hg19
|
chr11:93361756-93362286
|
chr11
| 93,361,756
| 93,362,286
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748084-78748614,chr3:111174084-111384613,chr8:127137778-131068628,chrX:116866132-116866662.
|
Homo sapiens
|
ecDNA
|
ec_hsa_20
|
hg19
|
chr11:93361763-93362287
|
chr11
| 93,361,763
| 93,362,287
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390.
|
Homo sapiens
|
ecDNA
|
ec_hsa_21
|
hg19
|
chr11:93361795-93362278
|
chr11
| 93,361,795
| 93,362,278
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr3:111174081-111384563,chr8:127493240-131068628,chr20:54188605-54189088,chrX:23578881-23579364.
|
Homo sapiens
|
ecDNA
|
ec_hsa_22
|
hg19
|
chr11:93361810-93362282
|
chr11
| 93,361,810
| 93,362,282
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr8:127493240-131068628
|
Homo sapiens
|
ecDNA
|
ec_hsa_23
|
hg19
|
chr12:114042493-114782434
|
chr12
| 114,042,493
| 114,782,434
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:50368739-51209733,chr12:51670201-52642673,
|
Homo sapiens
|
ecDNA
|
ec_hsa_24
|
hg19
|
chr12:22946040-58416791
|
chr12
| 22,946,040
| 58,416,791
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
AGAP2,ANP32D,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HNRNPA1,HOTAIR,KRAS,LETMD1,PA2G4,TFCP2,WNT1,WNT10B
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_25
|
hg19
|
chr12:2937590-132446960
|
chr12
| 2,937,590
| 132,446,960
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,ANP32D,ASCL1,ATF1,CDK4,CDKN1B,DCD,DDIT3,ELK3,EPS8,ERBB3,ESPL1,ETV6,FGF6,FOXM1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,KRAS,KSR2,LDHB,LETMD1,LMO3,MDM2,MSI1,NANOG,OLR1,PA2G4,PIWIL1,PTPN11,SART3,STYK1,SYT1,TBC1D15,TBX3,TFCP2,WNT1,WNT10B,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:GBM
|
Homo sapiens
|
ecDNA
|
ec_hsa_26
|
hg19
|
chr12:30529733-30530238
|
chr12
| 30,529,733
| 30,530,238
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_27
|
hg19
|
chr12:30529734-30530238
|
chr12
| 30,529,734
| 30,530,238
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_28
|
hg19
|
chr12:30529764-30530238
|
chr12
| 30,529,764
| 30,530,238
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_29
|
hg19
|
chr12:30529773-30530238
|
chr12
| 30,529,773
| 30,530,238
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_30
|
hg19
|
chr12:3573149-53227596
|
chr12
| 3,573,149
| 53,227,596
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
ANP32D,ATF1,CDKN1B,EPS8,ETV6,FGF6,KRAS,LDHB,LETMD1,LMO3,NANOG,OLR1,STYK1,TFCP2,WNT1,WNT10B
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:GBM
|
Homo sapiens
|
ecDNA
|
ec_hsa_31
|
hg19
|
chr12:4282258-4876809
|
chr12
| 4,282,258
| 4,876,809
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
FGF6
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:9743798-9778217.
|
Homo sapiens
|
ecDNA
|
ec_hsa_32
|
hg19
|
chr12:49333985-84231085
|
chr12
| 49,333,985
| 84,231,085
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
AGAP2,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,SYT1,TBC1D15,TFCP2,WNT1,WNT10B,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_33
|
hg19
|
chr12:50194461-99767466
|
chr12
| 50,194,461
| 99,767,466
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,ATF1,CDK4,DCD,DDIT3,ELK3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,SYT1,TBC1D15,TFCP2,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:GBM
|
Homo sapiens
|
ecDNA
|
ec_hsa_34
|
hg19
|
chr12:50368739-51209733
|
chr12
| 50,368,739
| 51,209,733
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
ATF1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:51670201-52642673,chr12:114042493-114782434.
|
Homo sapiens
|
ecDNA
|
ec_hsa_35
|
hg19
|
chr12:50449904-70629864
|
chr12
| 50,449,904
| 70,629,864
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
AGAP2,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,TFCP2,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_36
|
hg19
|
chr12:51670201-52642673
|
chr12
| 51,670,201
| 52,642,673
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:50368739-51209733,chr12:114042493-114782434.
|
Homo sapiens
|
ecDNA
|
ec_hsa_37
|
hg19
|
chr12:56837603-76223049
|
chr12
| 56,837,603
| 76,223,049
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1,HMGA2,IFNG,MDM2,TBC1D15,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_38
|
hg19
|
chr12:57209160-58725448
|
chr12
| 57,209,160
| 58,725,448
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_39
|
hg19
|
chr12:57399247-58562513
|
chr12
| 57,399,247
| 58,562,513
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chrX:154748217-154748715.
|
Homo sapiens
|
ecDNA
|
ec_hsa_40
|
hg19
|
chr12:57409417-58562513
|
chr12
| 57,409,417
| 58,562,513
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr7:54649106-55477598,chr12:70496679-70497181.
|
Homo sapiens
|
ecDNA
|
ec_hsa_41
|
hg19
|
chr12:57496686-58315685
|
chr12
| 57,496,686
| 58,315,685
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377640-50378173.
|
Homo sapiens
|
ecDNA
|
ec_hsa_42
|
hg19
|
chr12:57496689-58315685
|
chr12
| 57,496,689
| 58,315,685
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716211-11716729,chr7:54729139-55479139,chr8:127442805-132833866,chr8:135105698-135663156.
|
Homo sapiens
|
ecDNA
|
ec_hsa_43
|
hg19
|
chr12:57496694-58315685
|
chr12
| 57,496,694
| 58,315,685
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr7:54796492-55548745,chr8:127442805-133327046,chr12:57496694-58315685,chr15:50377642-50378172.
|
Homo sapiens
|
ecDNA
|
ec_hsa_44
|
hg19
|
chr12:57496714-58315685
|
chr12
| 57,496,714
| 58,315,685
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377651-50398160.
|
Homo sapiens
|
ecDNA
|
ec_hsa_45
|
hg19
|
chr12:57496724-58315685
|
chr12
| 57,496,724
| 58,315,685
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377663-50378167.
|
Homo sapiens
|
ecDNA
|
ec_hsa_46
|
hg19
|
chr12:57502937-58562513
|
chr12
| 57,502,937
| 58,562,513
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:70496679-70497179.
|
Homo sapiens
|
ecDNA
|
ec_hsa_47
|
hg19
|
chr12:57503737-58357571
|
chr12
| 57,503,737
| 58,357,571
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr7:54809106-55477598,chr8:127210847-133305515,chr8:135082366-135082849,chr8:135105698-135699519.
|
Homo sapiens
|
ecDNA
|
ec_hsa_48
|
hg19
|
chr12:57503752-58562513
|
chr12
| 57,503,752
| 58,562,513
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr21:23357595-23358085,chrX:116866170-116866660.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr7:54793202-55548745,chr8:126238838-132308654,chr8:135119160-136243156.
|
Homo sapiens
|
ecDNA
|
ec_hsa_49
|
hg19
|
chr12:57527651-58285794
|
chr12
| 57,527,651
| 58,285,794
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_50
|
hg19
|
chr12:57699728-64487930
|
chr12
| 57,699,728
| 64,487,930
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Pathology:Recurent Glioblastoma
|
Homo sapiens
|
ecDNA
|
ec_hsa_51
|
hg19
|
chr12:57795337-72184414
|
chr12
| 57,795,337
| 72,184,414
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1,HMGA2,IFNG,MDM2,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
Not Available
|
Homo sapiens
|
ecDNA
|
ec_hsa_52
|
hg19
|
chr12:57802773-58628188
|
chr12
| 57,802,773
| 58,628,188
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:59234812-60099303,chr12:61166617-61688013,chr12:64090187-64424120
|
Homo sapiens
|
ecDNA
|
ec_hsa_53
|
hg19
|
chr12:57802773-58628883
|
chr12
| 57,802,773
| 58,628,883
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:59233812-60099303,chr12:61166630-61688013,chr12:64090187-64424120
|
Homo sapiens
|
ecDNA
|
ec_hsa_54
|
hg19
|
chr12:57817510-58780431
|
chr12
| 57,817,510
| 58,780,431
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
AmpliconArchitect
|
Not Available
|
AGAP2,CDK4,DDIT3,GLI1
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:92833733-92835733
|
Homo sapiens
|
ecDNA
|
ec_hsa_55
|
hg19
|
chr12:57920204-58962354
|
chr12
| 57,920,204
| 58,962,354
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_56
|
hg19
|
chr12:57920205-58672862
|
chr12
| 57,920,205
| 58,672,862
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_57
|
hg19
|
chr12:57920218-58962354
|
chr12
| 57,920,218
| 58,962,354
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_58
|
hg19
|
chr12:57920237-58962354
|
chr12
| 57,920,237
| 58,962,354
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_59
|
hg19
|
chr12:57920245-58669861
|
chr12
| 57,920,245
| 58,669,861
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
AGAP2,CDK4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_60
|
hg19
|
chr12:58030230-58278722
|
chr12
| 58,030,230
| 58,278,722
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
AGAP2,CDK4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This belongs to a DM with chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808.
|
Homo sapiens
|
ecDNA
|
ec_hsa_61
|
hg19
|
chr12:58731394-58962354
|
chr12
| 58,731,394
| 58,962,354
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_62
|
hg19
|
chr12:58731395-58962354
|
chr12
| 58,731,395
| 58,962,354
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_63
|
hg19
|
chr12:59233812-60099303
|
chr12
| 59,233,812
| 60,099,303
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:61166630-61688013,chr12:64090187-64424120
|
Homo sapiens
|
ecDNA
|
ec_hsa_64
|
hg19
|
chr12:59234812-60099303
|
chr12
| 59,234,812
| 60,099,303
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:61166617-61688013,chr12:64090187-64424120
|
Homo sapiens
|
ecDNA
|
ec_hsa_65
|
hg19
|
chr12:59589390-59862924
|
chr12
| 59,589,390
| 59,862,924
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.5.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_66
|
hg19
|
chr12:60627354-61180648
|
chr12
| 60,627,354
| 61,180,648
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_67
|
hg19
|
chr12:60627354-61180657
|
chr12
| 60,627,354
| 61,180,657
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_68
|
hg19
|
chr12:60627354-61180674
|
chr12
| 60,627,354
| 61,180,674
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_69
|
hg19
|
chr12:60627354-61180686
|
chr12
| 60,627,354
| 61,180,686
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_70
|
hg19
|
chr12:60627354-61180687
|
chr12
| 60,627,354
| 61,180,687
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_71
|
hg19
|
chr12:61166617-61688013
|
chr12
| 61,166,617
| 61,688,013
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:59234812-60099303,chr12:64090187-64424120
|
Homo sapiens
|
ecDNA
|
ec_hsa_72
|
hg19
|
chr12:61166630-61688013
|
chr12
| 61,166,630
| 61,688,013
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:59233812-60099303,chr12:64090187-64424120
|
Homo sapiens
|
ecDNA
|
ec_hsa_73
|
hg19
|
chr12:62450034-62660568
|
chr12
| 62,450,034
| 62,660,568
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:63199780-63200314,chr12:65892578-65893112,chr7:54329983-55487522
|
Homo sapiens
|
ecDNA
|
ec_hsa_74
|
hg19
|
chr12:62674966-62695439
|
chr12
| 62,674,966
| 62,695,439
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_75
|
hg19
|
chr12:63199780-63200314
|
chr12
| 63,199,780
| 63,200,314
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:65892578-65893112,chr7:54329983-55487522,chr12:62450034-62660568
|
Homo sapiens
|
ecDNA
|
ec_hsa_76
|
hg19
|
chr12:64090187-64424120
|
chr12
| 64,090,187
| 64,424,120
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:59234812-60099303,chr12:61166617-61688013;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:61166630-61688013,chr12:59233812-60099303
|
Homo sapiens
|
ecDNA
|
ec_hsa_77
|
hg19
|
chr12:64406148-64811726
|
chr12
| 64,406,148
| 64,811,726
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6417);2.Pathology:GBM;3.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808.
|
Homo sapiens
|
ecDNA
|
ec_hsa_78
|
hg19
|
chr12:65415047-65738486
|
chr12
| 65,415,047
| 65,738,486
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6419);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808,chr12:58030230-58278722,chr12:64406148-64811726.
|
Homo sapiens
|
ecDNA
|
ec_hsa_79
|
hg19
|
chr12:65892578-65893112
|
chr12
| 65,892,578
| 65,893,112
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:62450034-62660568,chr12:63199780-63200314,chr7:54329983-55487522
|
Homo sapiens
|
ecDNA
|
ec_hsa_80
|
hg19
|
chr12:66478328-66795950
|
chr12
| 66,478,328
| 66,795,950
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_81
|
hg19
|
chr12:66478328-66810483
|
chr12
| 66,478,328
| 66,810,483
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_82
|
hg19
|
chr12:66886366-67157415
|
chr12
| 66,886,366
| 67,157,415
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_83
|
hg19
|
chr12:66886367-67158548
|
chr12
| 66,886,367
| 67,158,548
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_84
|
hg19
|
chr12:66886379-67158536
|
chr12
| 66,886,379
| 67,158,536
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_85
|
hg19
|
chr12:66886397-67157415
|
chr12
| 66,886,397
| 67,157,415
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_86
|
hg19
|
chr12:66886406-67157415
|
chr12
| 66,886,406
| 67,157,415
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_87
|
hg19
|
chr12:68410054-68646416
|
chr12
| 68,410,054
| 68,646,416
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
IFNG
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6427);Pathology:2.GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808.
|
Homo sapiens
|
ecDNA
|
ec_hsa_88
|
hg19
|
chr12:68920860-70279998
|
chr12
| 68,920,860
| 70,279,998
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
MDM2,YEATS4
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6430);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:70478646-70774110,chr15:59880274-59880808.
|
Homo sapiens
|
ecDNA
|
ec_hsa_89
|
hg19
|
chr12:68932602-69413066
|
chr12
| 68,932,602
| 69,413,066
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
MDM2
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_90
|
hg19
|
chr12:68932602-69413075
|
chr12
| 68,932,602
| 69,413,075
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
MDM2
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_91
|
hg19
|
chr12:68932602-69413093
|
chr12
| 68,932,602
| 69,413,093
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
MDM2
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_92
|
hg19
|
chr12:68932602-69417042
|
chr12
| 68,932,602
| 69,417,042
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
MDM2
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_93
|
hg19
|
chr12:70478646-70774110
|
chr12
| 70,478,646
| 70,774,110
|
Disease
|
Brain
|
Glioblastoma
|
Prediction
|
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
Not Available
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6434);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr15:59880274-59880808.
|
Homo sapiens
|
ecDNA
|
ec_hsa_94
|
hg19
|
chr12:70496679-70497179
|
chr12
| 70,496,679
| 70,497,179
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513.
|
Homo sapiens
|
ecDNA
|
ec_hsa_95
|
hg19
|
chr12:70496679-70497181
|
chr12
| 70,496,679
| 70,497,181
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr7:54649106-55477598,chr12:57409417-58562513,
|
Homo sapiens
|
ecDNA
|
ec_hsa_96
|
hg19
|
chr12:73584312-74472853
|
chr12
| 73,584,312
| 74,472,853
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
|
Homo sapiens
|
ecDNA
|
ec_hsa_97
|
hg19
|
chr12:73584313-74472853
|
chr12
| 73,584,313
| 74,472,853
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
|
Homo sapiens
|
ecDNA
|
ec_hsa_98
|
hg19
|
chr12:73584325-74472853
|
chr12
| 73,584,325
| 74,472,853
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
|
Homo sapiens
|
ecDNA
|
ec_hsa_99
|
hg19
|
chr12:73584343-74472853
|
chr12
| 73,584,343
| 74,472,853
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
|
Homo sapiens
|
ecDNA
|
ec_hsa_100
|
hg19
|
chr12:73584352-74472853
|
chr12
| 73,584,352
| 74,472,853
|
Disease
|
Brain
|
Glioblastoma
|
Experiment
|
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
|
Not Available
|
Not Available
|
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
|
WGS
|
29686388
|
2018
|
May confer to divergent inheritance patterns
|
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
|
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