repository stringclasses 11
values | repo_id stringlengths 1 3 | target_module_path stringlengths 16 72 | prompt stringlengths 298 21.7k | relavent_test_path stringlengths 50 99 | full_function stringlengths 336 33.8k | function_name stringlengths 2 51 | content_class stringclasses 3
values | external_dependencies stringclasses 2
values |
|---|---|---|---|---|---|---|---|---|
astropy | 8 | astropy/coordinates/earth.py | def get_itrs(self, obstime=None, location=None):
"""
Generates an `~astropy.coordinates.ITRS` object with the location of
this object at the requested ``obstime``, either geocentric, or
topocentric relative to a given ``location``.
Parameters
----------
obsti... | /usr/src/app/target_test_cases/failed_tests_EarthLocation.get_itrs.txt | def get_itrs(self, obstime=None, location=None):
"""
Generates an `~astropy.coordinates.ITRS` object with the location of
this object at the requested ``obstime``, either geocentric, or
topocentric relative to a given ``location``.
Parameters
----------
obsti... | EarthLocation.get_itrs | repository-level | external |
astropy | 9 | astropy/coordinates/earth.py | def gravitational_redshift(
self, obstime, bodies=["sun", "jupiter", "moon"], masses={}
):
"""Return the gravitational redshift at this EarthLocation.
Calculates the gravitational redshift, of order 3 m/s, due to the
requested solar system bodies.
Parameters
---... | /usr/src/app/target_test_cases/failed_tests_EarthLocation.gravitational_redshift.txt | def gravitational_redshift(
self, obstime, bodies=["sun", "jupiter", "moon"], masses={}
):
"""Return the gravitational redshift at this EarthLocation.
Calculates the gravitational redshift, of order 3 m/s, due to the
requested solar system bodies.
Parameters
---... | EarthLocation.gravitational_redshift | repository-level | non_external |
astropy | 10 | astropy/io/fits/hdu/hdulist.py | def writeto(
self, fileobj, output_verify="exception", overwrite=False, checksum=False
):
"""
Write the `HDUList` to a new file.
Parameters
----------
fileobj : str, file-like or `pathlib.Path`
File to write to. If a file object, must be opened in a
... | /usr/src/app/target_test_cases/failed_tests_HDUList.writeto.txt | def writeto(
self, fileobj, output_verify="exception", overwrite=False, checksum=False
):
"""
Write the `HDUList` to a new file.
Parameters
----------
fileobj : str, file-like or `pathlib.Path`
File to write to. If a file object, must be opened in a
... | HDUList.writeto | repository-level | external |
astropy | 11 | astropy/timeseries/periodograms/lombscargle/core.py | def autofrequency(
self,
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
return_freq_limits=False,
):
"""Determine a suitable frequency grid for data.
Note that this assumes the peak width is driven by the obs... | /usr/src/app/target_test_cases/failed_tests_LombScargle.autofrequency.txt | def autofrequency(
self,
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
return_freq_limits=False,
):
"""Determine a suitable frequency grid for data.
Note that this assumes the peak width is driven by the obs... | LombScargle.autofrequency | file-level | external |
astropy | 12 | astropy/timeseries/periodograms/lombscargle/core.py | def autopower(
self,
method="auto",
method_kwds=None,
normalization=None,
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
):
"""Compute Lomb-Scargle power at automatically-determined frequencies.
... | /usr/src/app/target_test_cases/failed_tests_LombScargle.autopower.txt | def autopower(
self,
method="auto",
method_kwds=None,
normalization=None,
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
):
"""Compute Lomb-Scargle power at automatically-determined frequencies.
... | LombScargle.autopower | file-level | non_external |
astropy | 13 | astropy/timeseries/periodograms/lombscargle/core.py | def false_alarm_level(
self,
false_alarm_probability,
method="baluev",
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
method_kwds=None,
):
"""Level of maximum at a given false alarm probability.
... | /usr/src/app/target_test_cases/failed_tests_LombScargle.false_alarm_level.txt | def false_alarm_level(
self,
false_alarm_probability,
method="baluev",
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
method_kwds=None,
):
"""Level of maximum at a given false alarm probability.
... | LombScargle.false_alarm_level | repository-level | non_external |
astropy | 14 | astropy/timeseries/periodograms/lombscargle/core.py | def false_alarm_probability(
self,
power,
method="baluev",
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
method_kwds=None,
):
"""False alarm probability of periodogram maxima under the null hypothesis... | /usr/src/app/target_test_cases/failed_tests_LombScargle.false_alarm_probability.txt | def false_alarm_probability(
self,
power,
method="baluev",
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
method_kwds=None,
):
"""False alarm probability of periodogram maxima under the null hypothesis... | LombScargle.false_alarm_probability | repository-level | non_external |
astropy | 15 | astropy/timeseries/periodograms/lombscargle/core.py | def model(self, t, frequency):
"""Compute the Lomb-Scargle model at the given frequency.
The model at a particular frequency is a linear model:
model = offset + dot(design_matrix, model_parameters)
Parameters
----------
t : array-like or `~astropy.units.Quantity` ['... | /usr/src/app/target_test_cases/failed_tests_LombScargle.model.txt | def model(self, t, frequency):
"""Compute the Lomb-Scargle model at the given frequency.
The model at a particular frequency is a linear model:
model = offset + dot(design_matrix, model_parameters)
Parameters
----------
t : array-like or `~astropy.units.Quantity` ['... | LombScargle.model | repository-level | non_external |
astropy | 16 | astropy/timeseries/periodograms/lombscargle/core.py | def power(
self,
frequency,
normalization=None,
method="auto",
assume_regular_frequency=False,
method_kwds=None,
):
"""Compute the Lomb-Scargle power at the given frequencies.
Parameters
----------
frequency : array-like or `~astro... | /usr/src/app/target_test_cases/failed_tests_LombScargle.power.txt | def power(
self,
frequency,
normalization=None,
method="auto",
assume_regular_frequency=False,
method_kwds=None,
):
"""Compute the Lomb-Scargle power at the given frequencies.
Parameters
----------
frequency : array-like or `~astro... | LombScargle.power | repository-level | non_external |
astropy | 17 | astropy/timeseries/periodograms/lombscargle_multiband/core.py | def autofrequency(
self,
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
return_freq_limits=False,
):
"""Determine a suitable frequency grid for data.
Note that this assumes the peak width is driven by the obse... | /usr/src/app/target_test_cases/failed_tests_LombScargleMultiband.autofrequency.txt | def autofrequency(
self,
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
return_freq_limits=False,
):
"""Determine a suitable frequency grid for data.
Note that this assumes the peak width is driven by the obse... | LombScargleMultiband.autofrequency | repository-level | external |
astropy | 18 | astropy/timeseries/periodograms/lombscargle_multiband/core.py | def autopower(
self,
method="flexible",
sb_method="auto",
normalization="standard",
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
):
"""Compute Lomb-Scargle power at automatically-determined frequenci... | /usr/src/app/target_test_cases/failed_tests_LombScargleMultiband.autopower.txt | def autopower(
self,
method="flexible",
sb_method="auto",
normalization="standard",
samples_per_peak=5,
nyquist_factor=5,
minimum_frequency=None,
maximum_frequency=None,
):
"""Compute Lomb-Scargle power at automatically-determined frequenci... | LombScargleMultiband.autopower | file-level | non_external |
astropy | 19 | astropy/timeseries/periodograms/lombscargle_multiband/core.py | def design_matrix(self, frequency, t_fit=None, bands_fit=None):
"""Compute the design matrix for a given frequency
Parameters
----------
frequency : float
the frequency for the model
t_fit : array-like, `~astropy.units.Quantity`, or `~astropy.time.Time` (optional... | /usr/src/app/target_test_cases/failed_tests_LombScargleMultiband.design_matrix.txt | def design_matrix(self, frequency, t_fit=None, bands_fit=None):
"""Compute the design matrix for a given frequency
Parameters
----------
frequency : float
the frequency for the model
t_fit : array-like, `~astropy.units.Quantity`, or `~astropy.time.Time` (optional... | LombScargleMultiband.design_matrix | repository-level | external |
astropy | 20 | astropy/timeseries/periodograms/lombscargle_multiband/core.py | def model(self, t, frequency, bands_fit=None):
"""Compute the Lomb-Scargle model at the given frequency.
The model at a particular frequency is a linear model:
model = offset + dot(design_matrix, model_parameters)
Parameters
----------
t : array-like or `~astropy.un... | /usr/src/app/target_test_cases/failed_tests_LombScargleMultiband.model.txt | def model(self, t, frequency, bands_fit=None):
"""Compute the Lomb-Scargle model at the given frequency.
The model at a particular frequency is a linear model:
model = offset + dot(design_matrix, model_parameters)
Parameters
----------
t : array-like or `~astropy.un... | LombScargleMultiband.model | repository-level | external |
astropy | 21 | astropy/timeseries/periodograms/lombscargle_multiband/core.py | def offset(self, t_fit=None, bands_fit=None):
"""Return the offset array of the model
The offset array of the model is the (weighted) mean of the y values in each band.
Note that if self.center_data is False, the offset is 0 by definition.
Parameters
----------
t_fi... | /usr/src/app/target_test_cases/failed_tests_LombScargleMultiband.offset.txt | def offset(self, t_fit=None, bands_fit=None):
"""Return the offset array of the model
The offset array of the model is the (weighted) mean of the y values in each band.
Note that if self.center_data is False, the offset is 0 by definition.
Parameters
----------
t_fi... | LombScargleMultiband.offset | file-level | external |
astropy | 22 | astropy/timeseries/periodograms/lombscargle_multiband/core.py | def power(
self, frequency, method="flexible", sb_method="auto", normalization="standard"
):
"""Compute the Lomb-Scargle power at the given frequencies.
Parameters
----------
frequency : array-like or `~astropy.units.Quantity` ['frequency']
frequencies (not a... | /usr/src/app/target_test_cases/failed_tests_LombScargleMultiband.power.txt | def power(
self, frequency, method="flexible", sb_method="auto", normalization="standard"
):
"""Compute the Lomb-Scargle power at the given frequencies.
Parameters
----------
frequency : array-like or `~astropy.units.Quantity` ['frequency']
frequencies (not a... | LombScargleMultiband.power | repository-level | external |
astropy | 23 | astropy/nddata/compat.py | def convert_unit_to(self, unit, equivalencies=[]):
"""
Returns a new `NDData` object whose values have been converted
to a new unit.
Parameters
----------
unit : `astropy.units.UnitBase` instance or str
The unit to convert to.
equivalencies : lis... | /usr/src/app/target_test_cases/failed_tests_NDDataArray.convert_unit_to.txt | def convert_unit_to(self, unit, equivalencies=[]):
"""
Returns a new `NDData` object whose values have been converted
to a new unit.
Parameters
----------
unit : `astropy.units.UnitBase` instance or str
The unit to convert to.
equivalencies : lis... | NDDataArray.convert_unit_to | file-level | non_external |
astropy | 24 | astropy/coordinates/sky_coordinate.py | def apply_space_motion(self, new_obstime=None, dt=None):
"""Compute the position to a new time using the velocities.
Compute the position of the source represented by this coordinate object
to a new time using the velocities stored in this object and assuming
linear space motion (in... | /usr/src/app/target_test_cases/failed_tests_SkyCoord.apply_space_motion.txt | def apply_space_motion(self, new_obstime=None, dt=None):
"""Compute the position to a new time using the velocities.
Compute the position of the source represented by this coordinate object
to a new time using the velocities stored in this object and assuming
linear space motion (in... | SkyCoord.apply_space_motion | repository-level | non_external |
astropy | 25 | astropy/coordinates/spectral_coordinate.py | def replicate(
self,
value=None,
unit=None,
observer=None,
target=None,
radial_velocity=None,
redshift=None,
doppler_convention=None,
doppler_rest=None,
copy=False,
):
"""
Return a replica of the `SpectralCoord`, opt... | /usr/src/app/target_test_cases/failed_tests_SpectralCoord.replicate.txt | def replicate(
self,
value=None,
unit=None,
observer=None,
target=None,
radial_velocity=None,
redshift=None,
doppler_convention=None,
doppler_rest=None,
copy=False,
):
"""
Return a replica of the `SpectralCoord`, opt... | SpectralCoord.replicate | repository-level | external |
astropy | 26 | astropy/coordinates/spectral_coordinate.py | def with_observer_stationary_relative_to(
self, frame, velocity=None, preserve_observer_frame=False
):
"""
A new `SpectralCoord` with the velocity of the observer altered,
but not the position.
If a coordinate frame is specified, the observer velocities will be
... | /usr/src/app/target_test_cases/failed_tests_SpectralCoord.with_observer_stationary_relative_to.txt | def with_observer_stationary_relative_to(
self, frame, velocity=None, preserve_observer_frame=False
):
"""
A new `SpectralCoord` with the velocity of the observer altered,
but not the position.
If a coordinate frame is specified, the observer velocities will be
... | SpectralCoord.with_observer_stationary_relative_to | repository-level | non_external |
astropy | 27 | astropy/coordinates/spectral_coordinate.py | def with_radial_velocity_shift(self, target_shift=None, observer_shift=None):
"""
Apply a velocity shift to this spectral coordinate.
The shift can be provided as a redshift (float value) or radial
velocity (`~astropy.units.Quantity` with physical type of 'speed').
Paramete... | /usr/src/app/target_test_cases/failed_tests_SpectralCoord.with_radial_velocity_shift.txt | def with_radial_velocity_shift(self, target_shift=None, observer_shift=None):
"""
Apply a velocity shift to this spectral coordinate.
The shift can be provided as a redshift (float value) or radial
velocity (`~astropy.units.Quantity` with physical type of 'speed').
Paramete... | SpectralCoord.with_radial_velocity_shift | repository-level | non_external |
astropy | 28 | astropy/coordinates/spectral_quantity.py | def to(self, unit, equivalencies=[], doppler_rest=None, doppler_convention=None):
"""
Return a new `~astropy.coordinates.SpectralQuantity` object with the specified unit.
By default, the ``spectral`` equivalency will be enabled, as well as
one of the Doppler equivalencies if convert... | /usr/src/app/target_test_cases/failed_tests_SpectralQuantity.to.txt | def to(self, unit, equivalencies=[], doppler_rest=None, doppler_convention=None):
"""
Return a new `~astropy.coordinates.SpectralQuantity` object with the specified unit.
By default, the ``spectral`` equivalency will be enabled, as well as
one of the Doppler equivalencies if convert... | SpectralQuantity.to | repository-level | non_external |
astropy | 29 | astropy/table/table.py | def add_index(self, colnames, engine=None, unique=False):
"""
Insert a new index among one or more columns.
If there are no indices, make this index the
primary table index.
Parameters
----------
colnames : str or list
List of column names (or a s... | /usr/src/app/target_test_cases/failed_tests_Table.add_index.txt | def add_index(self, colnames, engine=None, unique=False):
"""
Insert a new index among one or more columns.
If there are no indices, make this index the
primary table index.
Parameters
----------
colnames : str or list
List of column names (or a s... | Table.add_index | repository-level | non_external |
astropy | 30 | astropy/table/table.py | def argsort(self, keys=None, kind=None, reverse=False):
"""
Return the indices which would sort the table according to one or
more key columns. This simply calls the `numpy.argsort` function on
the table with the ``order`` parameter set to ``keys``.
Parameters
-----... | /usr/src/app/target_test_cases/failed_tests_Table.argsort.txt | def argsort(self, keys=None, kind=None, reverse=False):
"""
Return the indices which would sort the table according to one or
more key columns. This simply calls the `numpy.argsort` function on
the table with the ``order`` parameter set to ``keys``.
Parameters
-----... | Table.argsort | repository-level | external |
astropy | 31 | astropy/table/table.py | def reverse(self):
"""
Reverse the row order of table rows. The table is reversed
in place and there are no function arguments.
Examples
--------
Create a table with three columns::
>>> t = Table([['Max', 'Jo', 'John'], ['Miller','Miller','Jackson'],
... | /usr/src/app/target_test_cases/failed_tests_Table.reverse.txt | def reverse(self):
"""
Reverse the row order of table rows. The table is reversed
in place and there are no function arguments.
Examples
--------
Create a table with three columns::
>>> t = Table([['Max', 'Jo', 'John'], ['Miller','Miller','Jackson'],
... | Table.reverse | file-level | non_external |
astropy | 32 | astropy/table/table.py | def round(self, decimals=0):
"""
Round numeric columns in-place to the specified number of decimals.
Non-numeric columns will be ignored.
Examples
--------
Create three columns with different types:
>>> t = Table([[1, 4, 5], [-25.55, 12.123, 85],
... | /usr/src/app/target_test_cases/failed_tests_Table.round.txt | def round(self, decimals=0):
"""
Round numeric columns in-place to the specified number of decimals.
Non-numeric columns will be ignored.
Examples
--------
Create three columns with different types:
>>> t = Table([[1, 4, 5], [-25.55, 12.123, 85],
... | Table.round | file-level | external |
astropy | 33 | astropy/table/table.py | def sort(self, keys=None, *, kind=None, reverse=False):
"""
Sort the table according to one or more keys. This operates
on the existing table and does not return a new table.
Parameters
----------
keys : str or list of str
The key(s) to order the table by... | /usr/src/app/target_test_cases/failed_tests_Table.sort.txt | def sort(self, keys=None, *, kind=None, reverse=False):
"""
Sort the table according to one or more keys. This operates
on the existing table and does not return a new table.
Parameters
----------
keys : str or list of str
The key(s) to order the table by... | Table.sort | file-level | non_external |
astropy | 34 | astropy/time/core.py | def earth_rotation_angle(self, longitude=None):
"""Calculate local Earth rotation angle.
Parameters
----------
longitude : `~astropy.units.Quantity`, `~astropy.coordinates.EarthLocation`, str, or None; optional
The longitude on the Earth at which to compute the Earth rot... | /usr/src/app/target_test_cases/failed_tests_Time.earth_rotation_angle.txt | def earth_rotation_angle(self, longitude=None):
"""Calculate local Earth rotation angle.
Parameters
----------
longitude : `~astropy.units.Quantity`, `~astropy.coordinates.EarthLocation`, str, or None; optional
The longitude on the Earth at which to compute the Earth rot... | Time.earth_rotation_angle | file-level | non_external |
astropy | 35 | astropy/time/core.py | def sidereal_time(self, kind, longitude=None, model=None):
"""Calculate sidereal time.
Parameters
----------
kind : str
``'mean'`` or ``'apparent'``, i.e., accounting for precession
only, or also for nutation.
longitude : `~astropy.units.Quantity`, `~... | /usr/src/app/target_test_cases/failed_tests_Time.sidereal_time.txt | def sidereal_time(self, kind, longitude=None, model=None):
"""Calculate sidereal time.
Parameters
----------
kind : str
``'mean'`` or ``'apparent'``, i.e., accounting for precession
only, or also for nutation.
longitude : `~astropy.units.Quantity`, `~... | Time.sidereal_time | file-level | non_external |
astropy | 36 | astropy/timeseries/sampled.py | def fold(
self,
period=None,
epoch_time=None,
epoch_phase=0,
wrap_phase=None,
normalize_phase=False,
):
"""
Return a new `~astropy.timeseries.TimeSeries` folded with a period and
epoch.
Parameters
----------
period ... | /usr/src/app/target_test_cases/failed_tests_TimeSeries.fold.txt | def fold(
self,
period=None,
epoch_time=None,
epoch_phase=0,
wrap_phase=None,
normalize_phase=False,
):
"""
Return a new `~astropy.timeseries.TimeSeries` folded with a period and
epoch.
Parameters
----------
period ... | TimeSeries.fold | repository-level | non_external |
astropy | 37 | astropy/wcs/wcs.py | def slice(self, view, numpy_order=True):
"""
Slice a WCS instance using a Numpy slice. The order of the slice should
be reversed (as for the data) compared to the natural WCS order.
Parameters
----------
view : tuple
A tuple containing the same number of ... | /usr/src/app/target_test_cases/failed_tests_WCS.slice.txt | def slice(self, view, numpy_order=True):
"""
Slice a WCS instance using a Numpy slice. The order of the slice should
be reversed (as for the data) compared to the natural WCS order.
Parameters
----------
view : tuple
A tuple containing the same number of ... | WCS.slice | repository-level | external |
astropy | 38 | astropy/io/fits/column.py | def _parse_tdisp_format(tdisp):
"""
Parse the ``TDISPn`` keywords for ASCII and binary tables into a
``(format, width, precision, exponential)`` tuple (the TDISP values
for ASCII and binary are identical except for 'Lw',
which is only present in BINTABLE extensions.
Parameters
----------
... | /usr/src/app/target_test_cases/failed_tests__parse_tdisp_format.txt | def _parse_tdisp_format(tdisp):
"""
Parse the ``TDISPn`` keywords for ASCII and binary tables into a
``(format, width, precision, exponential)`` tuple (the TDISP values
for ASCII and binary are identical except for 'Lw',
which is only present in BINTABLE extensions.
Parameters
----------
... | _parse_tdisp_format | repository-level | non_external |
astropy | 39 | astropy/io/ascii/qdp.py | def _read_table_qdp(qdp_file, names=None, table_id=None, delimiter=None):
"""Read a table from a QDP file.
Parameters
----------
qdp_file : str
Input QDP file name
Other Parameters
----------------
names : list of str
Name of data columns (defaults to ['col1', 'col2', ...])... | /usr/src/app/target_test_cases/failed_tests__read_table_qdp.txt | def _read_table_qdp(qdp_file, names=None, table_id=None, delimiter=None):
"""Read a table from a QDP file.
Parameters
----------
qdp_file : str
Input QDP file name
Other Parameters
----------------
names : list of str
Name of data columns (defaults to ['col1', 'col2', ...])... | _read_table_qdp | repository-level | external |
astropy | 40 | astropy/timeseries/downsample.py | def aggregate_downsample(
time_series,
*,
time_bin_size=None,
time_bin_start=None,
time_bin_end=None,
n_bins=None,
aggregate_func=None,
):
"""
Downsample a time series by binning values into bins with a fixed size or
custom sizes, using a single function to combine the values in ... | /usr/src/app/target_test_cases/failed_tests_aggregate_downsample.txt | def aggregate_downsample(
time_series,
*,
time_bin_size=None,
time_bin_start=None,
time_bin_end=None,
n_bins=None,
aggregate_func=None,
):
"""
Downsample a time series by binning values into bins with a fixed size or
custom sizes, using a single function to combine the values in ... | aggregate_downsample | repository-level | external |
astropy | 41 | astropy/coordinates/builtin_frames/utils.py | def aticq(srepr, astrom):
"""
A slightly modified version of the ERFA function ``eraAticq``.
``eraAticq`` performs the transformations between two coordinate systems,
with the details of the transformation being encoded into the ``astrom`` array.
There are two issues with the version of aticq in E... | /usr/src/app/target_test_cases/failed_tests_aticq.txt | def aticq(srepr, astrom):
"""
A slightly modified version of the ERFA function ``eraAticq``.
``eraAticq`` performs the transformations between two coordinate systems,
with the details of the transformation being encoded into the ``astrom`` array.
There are two issues with the version of aticq in E... | aticq | repository-level | external |
astropy | 42 | astropy/modeling/core.py | def bind_compound_bounding_box(
modelinstance,
bounding_boxes,
selector_args,
create_selector=None,
ignored=None,
order="C",
):
"""
Add a validated compound bounding box to a model instance.
Parameters
----------
modelinstance : `~astropy.modeling.Model` instance
Thi... | /usr/src/app/target_test_cases/failed_tests_bind_compound_bounding_box.txt | def bind_compound_bounding_box(
modelinstance,
bounding_boxes,
selector_args,
create_selector=None,
ignored=None,
order="C",
):
"""
Add a validated compound bounding box to a model instance.
Parameters
----------
modelinstance : `~astropy.modeling.Model` instance
Thi... | bind_compound_bounding_box | repository-level | non_external |
astropy | 43 | astropy/wcs/utils.py | def celestial_frame_to_wcs(frame, projection="TAN"):
"""
For a given coordinate frame, return the corresponding WCS object.
Note that the returned WCS object has only the elements corresponding to
coordinate frames set (e.g. ctype, equinox, radesys).
Parameters
----------
frame : :class:`~... | /usr/src/app/target_test_cases/failed_tests_celestial_frame_to_wcs.txt | def celestial_frame_to_wcs(frame, projection="TAN"):
"""
For a given coordinate frame, return the corresponding WCS object.
Note that the returned WCS object has only the elements corresponding to
coordinate frames set (e.g. ctype, equinox, radesys).
Parameters
----------
frame : :class:`~... | celestial_frame_to_wcs | file-level | non_external |
astropy | 44 | astropy/io/fits/hdu/compressed/_tiled_compression.py | def compress_image_data(
image_data,
compression_type,
compressed_header,
compressed_coldefs,
):
"""
Compress the data in a `~astropy.io.fits.CompImageHDU`.
The input HDU is expected to have a uncompressed numpy array as it's
``.data`` attribute.
Parameters
----------
image... | /usr/src/app/target_test_cases/failed_tests_compress_image_data.txt | def compress_image_data(
image_data,
compression_type,
compressed_header,
compressed_coldefs,
):
"""
Compress the data in a `~astropy.io.fits.CompImageHDU`.
The input HDU is expected to have a uncompressed numpy array as it's
``.data`` attribute.
Parameters
----------
image... | compress_image_data | repository-level | external |
astropy | 45 | astropy/timeseries/periodograms/lombscargle/utils.py | def compute_chi2_ref(y, dy=None, center_data=True, fit_mean=True):
"""Compute the reference chi-square for a particular dataset.
Note: this is not valid center_data=False and fit_mean=False.
Parameters
----------
y : array-like
data values
dy : float, array, or None, optional
d... | /usr/src/app/target_test_cases/failed_tests_compute_chi2_ref.txt | def compute_chi2_ref(y, dy=None, center_data=True, fit_mean=True):
"""Compute the reference chi-square for a particular dataset.
Note: this is not valid center_data=False and fit_mean=False.
Parameters
----------
y : array-like
data values
dy : float, array, or None, optional
d... | compute_chi2_ref | self-contained | external |
astropy | 46 | astropy/timeseries/periodograms/lombscargle/utils.py | def convert_normalization(Z, N, from_normalization, to_normalization, chi2_ref=None):
"""Convert power from one normalization to another.
This currently only works for standard & floating-mean models.
Parameters
----------
Z : array-like
the periodogram output
N : int
the numbe... | /usr/src/app/target_test_cases/failed_tests_convert_normalization.txt | def convert_normalization(Z, N, from_normalization, to_normalization, chi2_ref=None):
"""Convert power from one normalization to another.
This currently only works for standard & floating-mean models.
Parameters
----------
Z : array-like
the periodogram output
N : int
the numbe... | convert_normalization | file-level | external |
astropy | 47 | astropy/convolution/convolve.py | def convolve_models(model, kernel, mode="convolve_fft", **kwargs):
"""
Convolve two models using `~astropy.convolution.convolve_fft`.
Parameters
----------
model : `~astropy.modeling.core.Model`
Functional model
kernel : `~astropy.modeling.core.Model`
Convolution kernel
mode... | /usr/src/app/target_test_cases/failed_tests_convolve_models.txt | def convolve_models(model, kernel, mode="convolve_fft", **kwargs):
"""
Convolve two models using `~astropy.convolution.convolve_fft`.
Parameters
----------
model : `~astropy.modeling.core.Model`
Functional model
kernel : `~astropy.modeling.core.Model`
Convolution kernel
mode... | convolve_models | repository-level | external |
astropy | 48 | astropy/timeseries/periodograms/lombscargle/implementations/mle.py | def design_matrix(t, frequency, dy=None, bias=True, nterms=1):
"""Compute the Lomb-Scargle design matrix at the given frequency.
This is the matrix X such that the periodic model at the given frequency
can be expressed :math:`\\hat{y} = X \\theta`.
Parameters
----------
t : array-like, shape=(... | /usr/src/app/target_test_cases/failed_tests_design_matrix.txt | def design_matrix(t, frequency, dy=None, bias=True, nterms=1):
"""Compute the Lomb-Scargle design matrix at the given frequency.
This is the matrix X such that the periodic model at the given frequency
can be expressed :math:`\\hat{y} = X \\theta`.
Parameters
----------
t : array-like, shape=(... | design_matrix | self-contained | external |
astropy | 49 | astropy/utils/data.py | def download_file(
remote_url,
cache=False,
show_progress=True,
timeout=None,
sources=None,
pkgname="astropy",
http_headers=None,
ssl_context=None,
allow_insecure=False,
):
"""Downloads a URL and optionally caches the result.
It returns the filename of a file containing the ... | /usr/src/app/target_test_cases/failed_tests_download_file.txt | def download_file(
remote_url,
cache=False,
show_progress=True,
timeout=None,
sources=None,
pkgname="astropy",
http_headers=None,
ssl_context=None,
allow_insecure=False,
):
"""Downloads a URL and optionally caches the result.
It returns the filename of a file containing the ... | download_file | file-level | external |
astropy | 50 | astropy/utils/data_info.py | def dtype_info_name(dtype):
"""Return a human-oriented string name of the ``dtype`` arg.
This can be use by astropy methods that present type information about
a data object.
The output is mostly equivalent to ``dtype.name`` which takes the form
<type_name>[B] where <type_name> is like ``int`` or `... | /usr/src/app/target_test_cases/failed_tests_dtype_info_name.txt | def dtype_info_name(dtype):
"""Return a human-oriented string name of the ``dtype`` arg.
This can be use by astropy methods that present type information about
a data object.
The output is mostly equivalent to ``dtype.name`` which takes the form
<type_name>[B] where <type_name> is like ``int`` or `... | dtype_info_name | file-level | external |
astropy | 51 | astropy/timeseries/periodograms/lombscargle/_statistics.py | def fap_single(z, N, normalization, dH=1, dK=3):
"""Single-frequency false alarm probability for the Lomb-Scargle periodogram.
This is equal to 1 - cdf, where cdf is the cumulative distribution.
The single-frequency false alarm probability should not be confused with
the false alarm probability for the... | /usr/src/app/target_test_cases/failed_tests_fap_single.txt | def fap_single(z, N, normalization, dH=1, dK=3):
"""Single-frequency false alarm probability for the Lomb-Scargle periodogram.
This is equal to 1 - cdf, where cdf is the cumulative distribution.
The single-frequency false alarm probability should not be confused with
the false alarm probability for the... | fap_single | self-contained | external |
astropy | 52 | astropy/coordinates/funcs.py | def get_constellation(coord, short_name=False, constellation_list="iau"):
"""
Determines the constellation(s) a given coordinate object contains.
Parameters
----------
coord : coordinate-like
The object to determine the constellation of.
short_name : bool
If True, the returned n... | /usr/src/app/target_test_cases/failed_tests_get_constellation.txt | def get_constellation(coord, short_name=False, constellation_list="iau"):
"""
Determines the constellation(s) a given coordinate object contains.
Parameters
----------
coord : coordinate-like
The object to determine the constellation of.
short_name : bool
If True, the returned n... | get_constellation | repository-level | external |
astropy | 53 | astropy/coordinates/name_resolve.py | def get_icrs_coordinates(name, parse=False, cache=False):
"""
Retrieve an ICRS object by using `Sesame <https://cds.unistra.fr/cgi-bin/Sesame>`_
to retrieve coordinates for the specified name. By default, this will
search all available databases (SIMBAD, NED and VizieR) until a match is found.
If yo... | /usr/src/app/target_test_cases/failed_tests_get_icrs_coordinates.txt | def get_icrs_coordinates(name, parse=False, cache=False):
"""
Retrieve an ICRS object by using `Sesame <https://cds.unistra.fr/cgi-bin/Sesame>`_
to retrieve coordinates for the specified name. By default, this will
search all available databases (SIMBAD, NED and VizieR) until a match is found.
If yo... | get_icrs_coordinates | repository-level | external |
astropy | 54 | astropy/table/index.py | def get_index(table, table_copy=None, names=None):
"""
Inputs a table and some subset of its columns as table_copy.
List or tuple containing names of columns as names,and returns an index
corresponding to this subset or list or None if no such index exists.
Parameters
----------
table : `Ta... | /usr/src/app/target_test_cases/failed_tests_get_index.txt | def get_index(table, table_copy=None, names=None):
"""
Inputs a table and some subset of its columns as table_copy.
List or tuple containing names of columns as names,and returns an index
corresponding to this subset or list or None if no such index exists.
Parameters
----------
table : `Ta... | get_index | file-level | non_external |
astropy | 55 | astropy/coordinates/builtin_frames/utils.py | def get_offset_sun_from_barycenter(time, include_velocity=False, reverse=False):
"""
Returns the offset of the Sun center from the solar-system barycenter (SSB).
Parameters
----------
time : `~astropy.time.Time`
Time at which to calculate the offset
include_velocity : `bool`
If ... | /usr/src/app/target_test_cases/failed_tests_get_offset_sun_from_barycenter.txt | def get_offset_sun_from_barycenter(time, include_velocity=False, reverse=False):
"""
Returns the offset of the Sun center from the solar-system barycenter (SSB).
Parameters
----------
time : `~astropy.time.Time`
Time at which to calculate the offset
include_velocity : `bool`
If ... | get_offset_sun_from_barycenter | repository-level | non_external |
astropy | 56 | astropy/coordinates/funcs.py | def get_sun(time):
"""
Determines the location of the sun at a given time (or times, if the input
is an array `~astropy.time.Time` object), in geocentric coordinates.
Parameters
----------
time : `~astropy.time.Time`
The time(s) at which to compute the location of the sun.
Returns
... | /usr/src/app/target_test_cases/failed_tests_get_sun.txt | def get_sun(time):
"""
Determines the location of the sun at a given time (or times, if the input
is an array `~astropy.time.Time` object), in geocentric coordinates.
Parameters
----------
time : `~astropy.time.Time`
The time(s) at which to compute the location of the sun.
Returns
... | get_sun | repository-level | external |
astropy | 57 | astropy/visualization/hist.py | def hist(x, bins=10, ax=None, max_bins=1e5, **kwargs):
"""Enhanced histogram function.
This is a histogram function that enables the use of more sophisticated
algorithms for determining bins. Aside from the ``bins`` argument allowing
a string specified how bins are computed, the parameters are the sam... | /usr/src/app/target_test_cases/failed_tests_hist.txt | def hist(x, bins=10, ax=None, max_bins=1e5, **kwargs):
"""Enhanced histogram function.
This is a histogram function that enables the use of more sophisticated
algorithms for determining bins. Aside from the ``bins`` argument allowing
a string specified how bins are computed, the parameters are the sam... | hist | repository-level | external |
astropy | 58 | astropy/stats/histogram.py | def histogram(
a: ArrayLike,
bins: int
| list[int | float]
| Literal["blocks", "knuth", "scott", "freedman"]
| None = 10,
range: tuple[int | float, int | float] | None = None,
weights: ArrayLike | None = None,
**kwargs,
) -> tuple[NDArray, NDArray]:
"""Enhanced histogram function, pr... | /usr/src/app/target_test_cases/failed_tests_histogram.txt | def histogram(
a: ArrayLike,
bins: int
| list[int | float]
| Literal["blocks", "knuth", "scott", "freedman"]
| None = 10,
range: tuple[int | float, int | float] | None = None,
weights: ArrayLike | None = None,
**kwargs,
) -> tuple[NDArray, NDArray]:
"""Enhanced histogram function, pr... | histogram | file-level | external |
astropy | 59 | astropy/timeseries/periodograms/lombscargle/_statistics.py | def inv_fap_single(fap, N, normalization, dH=1, dK=3):
"""Single-frequency inverse false alarm probability.
This function computes the periodogram value associated with the specified
single-frequency false alarm probability. This should not be confused with
the false alarm level of the largest peak.
... | /usr/src/app/target_test_cases/failed_tests_inv_fap_single.txt | def inv_fap_single(fap, N, normalization, dH=1, dK=3):
"""Single-frequency inverse false alarm probability.
This function computes the periodogram value associated with the specified
single-frequency false alarm probability. This should not be confused with
the false alarm level of the largest peak.
... | inv_fap_single | self-contained | external |
astropy | 60 | astropy/coordinates/matrix_utilities.py | def is_O3(matrix, atol=None):
"""Check whether a matrix is in the length-preserving group O(3).
Parameters
----------
matrix : (..., N, N) array-like
Must have attribute ``.shape`` and method ``.swapaxes()`` and not error
when using `~numpy.isclose`.
atol : float, optional
T... | /usr/src/app/target_test_cases/failed_tests_is_O3.txt | def is_O3(matrix, atol=None):
"""Check whether a matrix is in the length-preserving group O(3).
Parameters
----------
matrix : (..., N, N) array-like
Must have attribute ``.shape`` and method ``.swapaxes()`` and not error
when using `~numpy.isclose`.
atol : float, optional
T... | is_O3 | self-contained | external |
astropy | 61 | astropy/coordinates/matrix_utilities.py | def is_rotation(matrix, allow_improper=False, atol=None):
"""Check whether a matrix is a rotation, proper or improper.
Parameters
----------
matrix : (..., N, N) array-like
Must have attribute ``.shape`` and method ``.swapaxes()`` and not error
when using `~numpy.isclose` and `~numpy.li... | /usr/src/app/target_test_cases/failed_tests_is_rotation.txt | def is_rotation(matrix, allow_improper=False, atol=None):
"""Check whether a matrix is a rotation, proper or improper.
Parameters
----------
matrix : (..., N, N) array-like
Must have attribute ``.shape`` and method ``.swapaxes()`` and not error
when using `~numpy.isclose` and `~numpy.li... | is_rotation | file-level | external |
astropy | 62 | astropy/stats/jackknife.py | def jackknife_resampling(data: NDArray[DT]) -> NDArray[DT]:
"""Performs jackknife resampling on numpy arrays.
Jackknife resampling is a technique to generate 'n' deterministic samples
of size 'n-1' from a measured sample of size 'n'. Basically, the i-th
sample, (1<=i<=n), is generated by means of remov... | /usr/src/app/target_test_cases/failed_tests_jackknife_resampling.txt | def jackknife_resampling(data: NDArray[DT]) -> NDArray[DT]:
"""Performs jackknife resampling on numpy arrays.
Jackknife resampling is a technique to generate 'n' deterministic samples
of size 'n-1' from a measured sample of size 'n'. Basically, the i-th
sample, (1<=i<=n), is generated by means of remov... | jackknife_resampling | file-level | external |
astropy | 63 | astropy/stats/jackknife.py | def jackknife_stats(
data: NDArray,
statistic: Callable,
confidence_level: float | None = 0.95,
) -> tuple[float | NDArray, float | NDArray, float | NDArray, NDArray]:
"""Performs jackknife estimation on the basis of jackknife resamples.
This function requires `SciPy <https://www.scipy.org/>`_ to b... | /usr/src/app/target_test_cases/failed_tests_jackknife_stats.txt | def jackknife_stats(
data: NDArray,
statistic: Callable,
confidence_level: float | None = 0.95,
) -> tuple[float | NDArray, float | NDArray, float | NDArray, NDArray]:
"""Performs jackknife estimation on the basis of jackknife resamples.
This function requires `SciPy <https://www.scipy.org/>`_ to b... | jackknife_stats | file-level | external |
astropy | 64 | astropy/table/operations.py | def join(
left,
right,
keys=None,
join_type="inner",
*,
keys_left=None,
keys_right=None,
keep_order=False,
uniq_col_name="{col_name}_{table_name}",
table_names=["1", "2"],
metadata_conflicts="warn",
join_funcs=None,
):
"""
Perform a join of the left table with the... | /usr/src/app/target_test_cases/failed_tests_join.txt | def join(
left,
right,
keys=None,
join_type="inner",
*,
keys_left=None,
keys_right=None,
keep_order=False,
uniq_col_name="{col_name}_{table_name}",
table_names=["1", "2"],
metadata_conflicts="warn",
join_funcs=None,
):
"""
Perform a join of the left table with the... | join | repository-level | external |
astropy | 65 | astropy/modeling/statistic.py | def leastsquare(measured_vals, updated_model, weights, *x):
"""Least square statistic, with optional weights, in N-dimensions.
Parameters
----------
measured_vals : ndarray or sequence
Measured data values. Will be cast to array whose
shape must match the array-cast of the evaluated mod... | /usr/src/app/target_test_cases/failed_tests_leastsquare.txt | def leastsquare(measured_vals, updated_model, weights, *x):
"""Least square statistic, with optional weights, in N-dimensions.
Parameters
----------
measured_vals : ndarray or sequence
Measured data values. Will be cast to array whose
shape must match the array-cast of the evaluated mod... | leastsquare | self-contained | external |
astropy | 66 | astropy/wcs/utils.py | def obsgeo_to_frame(obsgeo, obstime):
"""
Convert a WCS obsgeo property into an ITRS coordinate frame.
Parameters
----------
obsgeo : array-like
A shape ``(6, )`` array representing ``OBSGEO-[XYZ], OBSGEO-[BLH]`` as
returned by ``WCS.wcs.obsgeo``.
obstime : time-like
Th... | /usr/src/app/target_test_cases/failed_tests_obsgeo_to_frame.txt | def obsgeo_to_frame(obsgeo, obstime):
"""
Convert a WCS obsgeo property into an ITRS coordinate frame.
Parameters
----------
obsgeo : array-like
A shape ``(6, )`` array representing ``OBSGEO-[XYZ], OBSGEO-[BLH]`` as
returned by ``WCS.wcs.obsgeo``.
obstime : time-like
Th... | obsgeo_to_frame | repository-level | external |
astropy | 67 | astropy/nddata/utils.py | def overlap_slices(large_array_shape, small_array_shape, position, mode="partial"):
"""
Get slices for the overlapping part of a small and a large array.
Given a certain position of the center of the small array, with
respect to the large array, tuples of slices are returned which can be
used to ex... | /usr/src/app/target_test_cases/failed_tests_overlap_slices.txt | def overlap_slices(large_array_shape, small_array_shape, position, mode="partial"):
"""
Get slices for the overlapping part of a small and a large array.
Given a certain position of the center of the small array, with
respect to the large array, tuples of slices are returned which can be
used to ex... | overlap_slices | file-level | external |
astropy | 68 | astropy/io/votable/table.py | def parse(
source,
columns=None,
invalid="exception",
verify=None,
chunk_size=tree.DEFAULT_CHUNK_SIZE,
table_number=None,
table_id=None,
filename=None,
unit_format=None,
datatype_mapping=None,
_debug_python_based_parser=False,
):
"""
Parses a VOTABLE_ xml file (or fil... | /usr/src/app/target_test_cases/failed_tests_parse.txt | def parse(
source,
columns=None,
invalid="exception",
verify=None,
chunk_size=tree.DEFAULT_CHUNK_SIZE,
table_number=None,
table_id=None,
filename=None,
unit_format=None,
datatype_mapping=None,
_debug_python_based_parser=False,
):
"""
Parses a VOTABLE_ xml file (or fil... | parse | repository-level | external |
astropy | 69 | astropy/timeseries/periodograms/lombscargle/implementations/mle.py | def periodic_fit(t, y, dy, frequency, t_fit, center_data=True, fit_mean=True, nterms=1):
"""Compute the Lomb-Scargle model fit at a given frequency.
Parameters
----------
t, y, dy : float or array-like
The times, observations, and uncertainties to fit
frequency : float
The frequency... | /usr/src/app/target_test_cases/failed_tests_periodic_fit.txt | def periodic_fit(t, y, dy, frequency, t_fit, center_data=True, fit_mean=True, nterms=1):
"""Compute the Lomb-Scargle model fit at a given frequency.
Parameters
----------
t, y, dy : float or array-like
The times, observations, and uncertainties to fit
frequency : float
The frequency... | periodic_fit | file-level | external |
astropy | 70 | astropy/wcs/utils.py | def pixel_to_pixel(wcs_in, wcs_out, *inputs):
"""
Transform pixel coordinates in a dataset with a WCS to pixel coordinates
in another dataset with a different WCS.
This function is designed to efficiently deal with input pixel arrays that
are broadcasted views of smaller arrays, and is compatible w... | /usr/src/app/target_test_cases/failed_tests_pixel_to_pixel.txt | def pixel_to_pixel(wcs_in, wcs_out, *inputs):
"""
Transform pixel coordinates in a dataset with a WCS to pixel coordinates
in another dataset with a different WCS.
This function is designed to efficiently deal with input pixel arrays that
are broadcasted views of smaller arrays, and is compatible w... | pixel_to_pixel | repository-level | external |
astropy | 71 | astropy/wcs/utils.py | def pixel_to_skycoord(xp, yp, wcs, origin=0, mode="all", cls=None):
"""
Convert a set of pixel coordinates into a `~astropy.coordinates.SkyCoord`
coordinate.
Parameters
----------
xp, yp : float or ndarray
The coordinates to convert.
wcs : `~astropy.wcs.WCS`
The WCS transfor... | /usr/src/app/target_test_cases/failed_tests_pixel_to_skycoord.txt | def pixel_to_skycoord(xp, yp, wcs, origin=0, mode="all", cls=None):
"""
Convert a set of pixel coordinates into a `~astropy.coordinates.SkyCoord`
coordinate.
Parameters
----------
xp, yp : float or ndarray
The coordinates to convert.
wcs : `~astropy.wcs.WCS`
The WCS transfor... | pixel_to_skycoord | repository-level | non_external |
astropy | 72 | astropy/io/fits/convenience.py | def printdiff(inputa, inputb, *args, **kwargs):
"""
Compare two parts of a FITS file, including entire FITS files,
FITS `HDUList` objects and FITS ``HDU`` objects.
Parameters
----------
inputa : str, `HDUList` object, or ``HDU`` object
The filename of a FITS file, `HDUList`, or ``HDU``
... | /usr/src/app/target_test_cases/failed_tests_printdiff.txt | def printdiff(inputa, inputb, *args, **kwargs):
"""
Compare two parts of a FITS file, including entire FITS files,
FITS `HDUList` objects and FITS ``HDU`` objects.
Parameters
----------
inputa : str, `HDUList` object, or ``HDU`` object
The filename of a FITS file, `HDUList`, or ``HDU``
... | printdiff | repository-level | non_external |
astropy | 73 | astropy/io/fits/column.py | def python_to_tdisp(format_string, logical_dtype=False):
"""
Turn the Python format string to a TDISP FITS compliant format string. Not
all formats convert. these will cause a Warning and return None.
Parameters
----------
format_string : str
TDISPn FITS Header keyword. Used to specify... | /usr/src/app/target_test_cases/failed_tests_python_to_tdisp.txt | def python_to_tdisp(format_string, logical_dtype=False):
"""
Turn the Python format string to a TDISP FITS compliant format string. Not
all formats convert. these will cause a Warning and return None.
Parameters
----------
format_string : str
TDISPn FITS Header keyword. Used to specify... | python_to_tdisp | repository-level | external |
astropy | 74 | astropy/stats/sigma_clipping.py | def sigma_clipped_stats(
data: ArrayLike,
mask: NDArray | None = None,
mask_value: float | None = None,
sigma: float | None = 3.0,
sigma_lower: float | None = None,
sigma_upper: float | None = None,
maxiters: int | None = 5,
cenfunc: Literal["median", "mean"] | Callable | None = "median"... | /usr/src/app/target_test_cases/failed_tests_sigma_clipped_stats.txt | def sigma_clipped_stats(
data: ArrayLike,
mask: NDArray | None = None,
mask_value: float | None = None,
sigma: float | None = 3.0,
sigma_lower: float | None = None,
sigma_upper: float | None = None,
maxiters: int | None = 5,
cenfunc: Literal["median", "mean"] | Callable | None = "median"... | sigma_clipped_stats | repository-level | external |
astropy | 75 | astropy/utils/shapes.py | def simplify_basic_index(
basic_index: int | slice | Sequence[int | slice | EllipsisType | None],
*,
shape: Sequence[int],
) -> tuple[int | slice, ...]:
"""
Given a Numpy basic index, return a tuple of integers and slice objects
with no default values (`None`) if possible.
If one of the dim... | /usr/src/app/target_test_cases/failed_tests_simplify_basic_index.txt | def simplify_basic_index(
basic_index: int | slice | Sequence[int | slice | EllipsisType | None],
*,
shape: Sequence[int],
) -> tuple[int | slice, ...]:
"""
Given a Numpy basic index, return a tuple of integers and slice objects
with no default values (`None`) if possible.
If one of the dim... | simplify_basic_index | self-contained | external |
astropy | 76 | astropy/wcs/utils.py | def skycoord_to_pixel(coords, wcs, origin=0, mode="all"):
"""
Convert a set of SkyCoord coordinates into pixels.
Parameters
----------
coords : `~astropy.coordinates.SkyCoord`
The coordinates to convert.
wcs : `~astropy.wcs.WCS`
The WCS transformation to use.
origin : int
... | /usr/src/app/target_test_cases/failed_tests_skycoord_to_pixel.txt | def skycoord_to_pixel(coords, wcs, origin=0, mode="all"):
"""
Convert a set of SkyCoord coordinates into pixels.
Parameters
----------
coords : `~astropy.coordinates.SkyCoord`
The coordinates to convert.
wcs : `~astropy.wcs.WCS`
The WCS transformation to use.
origin : int
... | skycoord_to_pixel | repository-level | non_external |
astropy | 77 | astropy/io/fits/convenience.py | def table_to_hdu(table, character_as_bytes=False):
"""
Convert an `~astropy.table.Table` object to a FITS
`~astropy.io.fits.BinTableHDU`.
Parameters
----------
table : astropy.table.Table
The table to convert.
character_as_bytes : bool
Whether to return bytes for string colu... | /usr/src/app/target_test_cases/failed_tests_table_to_hdu.txt | def table_to_hdu(table, character_as_bytes=False):
"""
Convert an `~astropy.table.Table` object to a FITS
`~astropy.io.fits.BinTableHDU`.
Parameters
----------
table : astropy.table.Table
The table to convert.
character_as_bytes : bool
Whether to return bytes for string colu... | table_to_hdu | repository-level | external |
astropy | 78 | astropy/io/fits/fitstime.py | def time_to_fits(table):
"""
Replace Time columns in a Table with non-mixin columns containing
each element as a vector of two doubles (jd1, jd2) and return a FITS
header with appropriate time coordinate keywords.
jd = jd1 + jd2 represents time in the Julian Date format with
high-precision.
... | /usr/src/app/target_test_cases/failed_tests_time_to_fits.txt | def time_to_fits(table):
"""
Replace Time columns in a Table with non-mixin columns containing
each element as a vector of two doubles (jd1, jd2) and return a FITS
header with appropriate time coordinate keywords.
jd = jd1 + jd2 represents time in the Julian Date format with
high-precision.
... | time_to_fits | repository-level | external |
astropy | 79 | astropy/timeseries/periodograms/lombscargle/implementations/utils.py | def trig_sum(t, h, df, N, f0=0, freq_factor=1, oversampling=5, use_fft=True, Mfft=4):
"""Compute (approximate) trigonometric sums for a number of frequencies.
This routine computes weighted sine and cosine sums::
S_j = sum_i { h_i * sin(2 pi * f_j * t_i) }
C_j = sum_i { h_i * cos(2 pi * f_j * ... | /usr/src/app/target_test_cases/failed_tests_trig_sum.txt | def trig_sum(t, h, df, N, f0=0, freq_factor=1, oversampling=5, use_fft=True, Mfft=4):
"""Compute (approximate) trigonometric sums for a number of frequencies.
This routine computes weighted sine and cosine sums::
S_j = sum_i { h_i * sin(2 pi * f_j * t_i) }
C_j = sum_i { h_i * cos(2 pi * f_j * ... | trig_sum | file-level | external |
astropy | 80 | astropy/time/core.py | def update_leap_seconds(files=None):
"""If the current ERFA leap second table is out of date, try to update it.
Uses `astropy.utils.iers.LeapSeconds.auto_open` to try to find an
up-to-date table. See that routine for the definition of "out of date".
In order to make it safe to call this any time, all... | /usr/src/app/target_test_cases/failed_tests_update_leap_seconds.txt | def update_leap_seconds(files=None):
"""If the current ERFA leap second table is out of date, try to update it.
Uses `astropy.utils.iers.LeapSeconds.auto_open` to try to find an
up-to-date table. See that routine for the definition of "out of date".
In order to make it safe to call this any time, all... | update_leap_seconds | repository-level | non_external |
astropy | 81 | astropy/io/votable/table.py | def validate(source, output=sys.stdout, xmllint=False, filename=None):
"""
Prints a validation report for the given file.
Parameters
----------
source : path-like or file-like
Path to a VOTABLE_ xml file or `~pathlib.Path`
object having Path to a VOTABLE_ xml file.
If file-l... | /usr/src/app/target_test_cases/failed_tests_validate.txt | def validate(source, output=sys.stdout, xmllint=False, filename=None):
"""
Prints a validation report for the given file.
Parameters
----------
source : path-like or file-like
Path to a VOTABLE_ xml file or `~pathlib.Path`
object having Path to a VOTABLE_ xml file.
If file-l... | validate | repository-level | external |
astropy | 82 | astropy/wcs/utils.py | def wcs_to_celestial_frame(wcs):
"""
For a given WCS, return the coordinate frame that matches the celestial
component of the WCS.
Parameters
----------
wcs : :class:`~astropy.wcs.WCS` instance
The WCS to find the frame for
Returns
-------
frame : :class:`~astropy.coordinat... | /usr/src/app/target_test_cases/failed_tests_wcs_to_celestial_frame.txt | def wcs_to_celestial_frame(wcs):
"""
For a given WCS, return the coordinate frame that matches the celestial
component of the WCS.
Parameters
----------
wcs : :class:`~astropy.wcs.WCS` instance
The WCS to find the frame for
Returns
-------
frame : :class:`~astropy.coordinat... | wcs_to_celestial_frame | file-level | non_external |
astropy | 83 | astropy/utils/diff.py | def where_not_allclose(a, b, rtol=1e-5, atol=1e-8):
"""
A version of :func:`numpy.allclose` that returns the indices
where the two arrays differ, instead of just a boolean value.
Parameters
----------
a, b : array-like
Input arrays to compare.
rtol, atol : float
Relative an... | /usr/src/app/target_test_cases/failed_tests_where_not_allclose.txt | def where_not_allclose(a, b, rtol=1e-5, atol=1e-8):
"""
A version of :func:`numpy.allclose` that returns the indices
where the two arrays differ, instead of just a boolean value.
Parameters
----------
a, b : array-like
Input arrays to compare.
rtol, atol : float
Relative an... | where_not_allclose | self-contained | external |
astropy | 84 | astropy/io/votable/table.py | def writeto(table, file, tabledata_format=None):
"""
Writes a `~astropy.io.votable.tree.VOTableFile` to a VOTABLE_ xml file.
Parameters
----------
table : `~astropy.io.votable.tree.VOTableFile` or `~astropy.table.Table` instance.
file : str or :term:`file-like (writeable)`
Path or file... | /usr/src/app/target_test_cases/failed_tests_writeto.txt | def writeto(table, file, tabledata_format=None):
"""
Writes a `~astropy.io.votable.tree.VOTableFile` to a VOTABLE_ xml file.
Parameters
----------
table : `~astropy.io.votable.tree.VOTableFile` or `~astropy.table.Table` instance.
file : str or :term:`file-like (writeable)`
Path or file... | writeto | repository-level | non_external |
flask | 0 | src/flask/sansio/app.py | def handle_url_build_error(
self, error: BuildError, endpoint: str, values: dict[str, t.Any]
) -> str:
"""Called by :meth:`.url_for` if a
:exc:`~werkzeug.routing.BuildError` was raised. If this returns
a value, it will be returned by ``url_for``, otherwise the error
will ... | /usr/src/app/target_test_cases/failed_tests_app.App.handle_url_build_error.txt | def handle_url_build_error(
self, error: BuildError, endpoint: str, values: dict[str, t.Any]
) -> str:
"""Called by :meth:`.url_for` if a
:exc:`~werkzeug.routing.BuildError` was raised. If this returns
a value, it will be returned by ``url_for``, otherwise the error
will ... | app.App.handle_url_build_error | file-level | external |
flask | 1 | src/flask/sansio/app.py | def trap_http_exception(self, e: Exception) -> bool:
"""Checks if an HTTP exception should be trapped or not. By default
this will return ``False`` for all exceptions except for a bad request
key error if ``TRAP_BAD_REQUEST_ERRORS`` is set to ``True``. It
also returns ``True`` if `... | /usr/src/app/target_test_cases/failed_tests_app.App.trap_http_exception.txt | def trap_http_exception(self, e: Exception) -> bool:
"""Checks if an HTTP exception should be trapped or not. By default
this will return ``False`` for all exceptions except for a bad request
key error if ``TRAP_BAD_REQUEST_ERRORS`` is set to ``True``. It
also returns ``True`` if `... | app.App.trap_http_exception | file-level | non_external |
flask | 2 | src/flask/app.py | def app_context(self) -> AppContext:
"""Create an :class:`~flask.ctx.AppContext`. Use as a ``with``
block to push the context, which will make :data:`current_app`
point at this application.
An application context is automatically pushed by
:meth:`RequestContext.push() <flask... | /usr/src/app/target_test_cases/failed_tests_app.Flask.app_context.txt | def app_context(self) -> AppContext:
"""Create an :class:`~flask.ctx.AppContext`. Use as a ``with``
block to push the context, which will make :data:`current_app`
point at this application.
An application context is automatically pushed by
:meth:`RequestContext.push() <flask... | app.Flask.app_context | repository-level | non_external |
flask | 3 | src/flask/app.py | def create_url_adapter(self, request: Request | None) -> MapAdapter | None:
"""Creates a URL adapter for the given request. The URL adapter
is created at a point where the request context is not yet set
up so the request is passed explicitly.
.. versionadded:: 0.6
.. versio... | /usr/src/app/target_test_cases/failed_tests_app.Flask.create_url_adapter.txt | def create_url_adapter(self, request: Request | None) -> MapAdapter | None:
"""Creates a URL adapter for the given request. The URL adapter
is created at a point where the request context is not yet set
up so the request is passed explicitly.
.. versionadded:: 0.6
.. versio... | app.Flask.create_url_adapter | repository-level | non_external |
flask | 4 | src/flask/app.py | def do_teardown_appcontext(
self,
exc: BaseException | None = _sentinel, # type: ignore[assignment]
) -> None:
"""Called right before the application context is popped.
When handling a request, the application context is popped
after the request context. See :meth:`do_t... | /usr/src/app/target_test_cases/failed_tests_app.Flask.do_teardown_appcontext.txt | def do_teardown_appcontext(
self,
exc: BaseException | None = _sentinel, # type: ignore[assignment]
) -> None:
"""Called right before the application context is popped.
When handling a request, the application context is popped
after the request context. See :meth:`do_t... | app.Flask.do_teardown_appcontext | repository-level | non_external |
flask | 5 | src/flask/app.py | def do_teardown_request(
self,
exc: BaseException | None = _sentinel, # type: ignore[assignment]
) -> None:
"""Called after the request is dispatched and the response is
returned, right before the request context is popped.
This calls all functions decorated with
... | /usr/src/app/target_test_cases/failed_tests_app.Flask.do_teardown_request.txt | def do_teardown_request(
self,
exc: BaseException | None = _sentinel, # type: ignore[assignment]
) -> None:
"""Called after the request is dispatched and the response is
returned, right before the request context is popped.
This calls all functions decorated with
... | app.Flask.do_teardown_request | repository-level | non_external |
flask | 6 | src/flask/app.py | def get_send_file_max_age(self, filename: str | None) -> int | None:
"""Used by :func:`send_file` to determine the ``max_age`` cache
value for a given file path if it wasn't passed.
By default, this returns :data:`SEND_FILE_MAX_AGE_DEFAULT` from
the configuration of :data:`~flask.cu... | /usr/src/app/target_test_cases/failed_tests_app.Flask.get_send_file_max_age.txt | def get_send_file_max_age(self, filename: str | None) -> int | None:
"""Used by :func:`send_file` to determine the ``max_age`` cache
value for a given file path if it wasn't passed.
By default, this returns :data:`SEND_FILE_MAX_AGE_DEFAULT` from
the configuration of :data:`~flask.cu... | app.Flask.get_send_file_max_age | repository-level | external |
flask | 7 | src/flask/app.py | def make_response(self, rv: ft.ResponseReturnValue) -> Response:
"""Convert the return value from a view function to an instance of
:attr:`response_class`.
:param rv: the return value from the view function. The view function
must return a response. Returning ``None``, or the vi... | /usr/src/app/target_test_cases/failed_tests_app.Flask.make_response.txt | def make_response(self, rv: ft.ResponseReturnValue) -> Response:
"""Convert the return value from a view function to an instance of
:attr:`response_class`.
:param rv: the return value from the view function. The view function
must return a response. Returning ``None``, or the vi... | app.Flask.make_response | repository-level | external |
flask | 8 | src/flask/app.py | def open_resource(
self, resource: str, mode: str = "rb", encoding: str | None = None
) -> t.IO[t.AnyStr]:
"""Open a resource file relative to :attr:`root_path` for reading.
For example, if the file ``schema.sql`` is next to the file
``app.py`` where the ``Flask`` app is defined... | /usr/src/app/target_test_cases/failed_tests_app.Flask.open_resource.txt | def open_resource(
self, resource: str, mode: str = "rb", encoding: str | None = None
) -> t.IO[t.AnyStr]:
"""Open a resource file relative to :attr:`root_path` for reading.
For example, if the file ``schema.sql`` is next to the file
``app.py`` where the ``Flask`` app is defined... | app.Flask.open_resource | file-level | external |
flask | 9 | src/flask/app.py | def request_context(self, environ: WSGIEnvironment) -> RequestContext:
"""Create a :class:`~flask.ctx.RequestContext` representing a
WSGI environment. Use a ``with`` block to push the context,
which will make :data:`request` point at this request.
See :doc:`/reqcontext`.
Ty... | /usr/src/app/target_test_cases/failed_tests_app.Flask.request_context.txt | def request_context(self, environ: WSGIEnvironment) -> RequestContext:
"""Create a :class:`~flask.ctx.RequestContext` representing a
WSGI environment. Use a ``with`` block to push the context,
which will make :data:`request` point at this request.
See :doc:`/reqcontext`.
Ty... | app.Flask.request_context | repository-level | non_external |
flask | 10 | src/flask/app.py | def run(
self,
host: str | None = None,
port: int | None = None,
debug: bool | None = None,
load_dotenv: bool = True,
**options: t.Any,
) -> None:
"""Runs the application on a local development server.
Do not use ``run()`` in a production setting.... | /usr/src/app/target_test_cases/failed_tests_app.Flask.run.txt | def run(
self,
host: str | None = None,
port: int | None = None,
debug: bool | None = None,
load_dotenv: bool = True,
**options: t.Any,
) -> None:
"""Runs the application on a local development server.
Do not use ``run()`` in a production setting.... | app.Flask.run | repository-level | external |
flask | 11 | src/flask/app.py | def test_client(self, use_cookies: bool = True, **kwargs: t.Any) -> FlaskClient:
"""Creates a test client for this application. For information
about unit testing head over to :doc:`/testing`.
Note that if you are testing for assertions or exceptions in your
application code, you m... | /usr/src/app/target_test_cases/failed_tests_app.Flask.test_client.txt | def test_client(self, use_cookies: bool = True, **kwargs: t.Any) -> FlaskClient:
"""Creates a test client for this application. For information
about unit testing head over to :doc:`/testing`.
Note that if you are testing for assertions or exceptions in your
application code, you m... | app.Flask.test_client | repository-level | external |
flask | 12 | src/flask/app.py | def test_request_context(self, *args: t.Any, **kwargs: t.Any) -> RequestContext:
"""Create a :class:`~flask.ctx.RequestContext` for a WSGI
environment created from the given values. This is mostly useful
during testing, where you may want to run a function that uses
request data with... | /usr/src/app/target_test_cases/failed_tests_app.Flask.test_request_context.txt | def test_request_context(self, *args: t.Any, **kwargs: t.Any) -> RequestContext:
"""Create a :class:`~flask.ctx.RequestContext` for a WSGI
environment created from the given values. This is mostly useful
during testing, where you may want to run a function that uses
request data with... | app.Flask.test_request_context | repository-level | external |
flask | 13 | src/flask/app.py | def url_for(
self,
/,
endpoint: str,
*,
_anchor: str | None = None,
_method: str | None = None,
_scheme: str | None = None,
_external: bool | None = None,
**values: t.Any,
) -> str:
"""Generate a URL to the given endpoint with the g... | /usr/src/app/target_test_cases/failed_tests_app.Flask.url_for.txt | def url_for(
self,
/,
endpoint: str,
*,
_anchor: str | None = None,
_method: str | None = None,
_scheme: str | None = None,
_external: bool | None = None,
**values: t.Any,
) -> str:
"""Generate a URL to the given endpoint with the g... | app.Flask.url_for | repository-level | external |
flask | 14 | src/flask/app.py | def wsgi_app(
self, environ: WSGIEnvironment, start_response: StartResponse
) -> cabc.Iterable[bytes]:
"""The actual WSGI application. This is not implemented in
:meth:`__call__` so that middlewares can be applied without
losing a reference to the app object. Instead of doing thi... | /usr/src/app/target_test_cases/failed_tests_app.Flask.wsgi_app.txt | def wsgi_app(
self, environ: WSGIEnvironment, start_response: StartResponse
) -> cabc.Iterable[bytes]:
"""The actual WSGI application. This is not implemented in
:meth:`__call__` so that middlewares can be applied without
losing a reference to the app object. Instead of doing thi... | app.Flask.wsgi_app | repository-level | external |
flask | 15 | src/flask/sansio/app.py | def logger(self) -> logging.Logger:
"""A standard Python :class:`~logging.Logger` for the app, with
the same name as :attr:`name`.
In debug mode, the logger's :attr:`~logging.Logger.level` will
be set to :data:`~logging.DEBUG`.
If there are no handlers configured, a default... | /usr/src/app/target_test_cases/failed_tests_app.logger.txt | def logger(self) -> logging.Logger:
"""A standard Python :class:`~logging.Logger` for the app, with
the same name as :attr:`name`.
In debug mode, the logger's :attr:`~logging.Logger.level` will
be set to :data:`~logging.DEBUG`.
If there are no handlers configured, a default... | app.logger | repository-level | external |
flask | 16 | src/flask/sansio/app.py | def register_blueprint(self, blueprint: Blueprint, **options: t.Any) -> None:
"""Register a :class:`~flask.Blueprint` on the application. Keyword
arguments passed to this method will override the defaults set on the
blueprint.
Calls the blueprint's :meth:`~flask.Blueprint.register` ... | /usr/src/app/target_test_cases/failed_tests_app.register_blueprint.txt | def register_blueprint(self, blueprint: Blueprint, **options: t.Any) -> None:
"""Register a :class:`~flask.Blueprint` on the application. Keyword
arguments passed to this method will override the defaults set on the
blueprint.
Calls the blueprint's :meth:`~flask.Blueprint.register` ... | app.register_blueprint | repository-level | external |
flask | 17 | src/flask/sansio/app.py | def teardown_appcontext(self, f: T_teardown) -> T_teardown:
"""Registers a function to be called when the application
context is popped. The application context is typically popped
after the request context for each request, at the end of CLI
commands, or after a manually pushed cont... | /usr/src/app/target_test_cases/failed_tests_app.teardown_appcontext.txt | def teardown_appcontext(self, f: T_teardown) -> T_teardown:
"""Registers a function to be called when the application
context is popped. The application context is typically popped
after the request context for each request, at the end of CLI
commands, or after a manually pushed cont... | app.teardown_appcontext | repository-level | non_external |
flask | 18 | src/flask/sansio/app.py | def template_global(
self, name: str | None = None
) -> t.Callable[[T_template_global], T_template_global]:
"""A decorator that is used to register a custom template global function.
You can specify a name for the global function, otherwise the function
name will be used. Example... | /usr/src/app/target_test_cases/failed_tests_app.template_global.txt | def template_global(
self, name: str | None = None
) -> t.Callable[[T_template_global], T_template_global]:
"""A decorator that is used to register a custom template global function.
You can specify a name for the global function, otherwise the function
name will be used. Example... | app.template_global | repository-level | external |
flask | 19 | src/flask/sansio/app.py | def template_test(
self, name: str | None = None
) -> t.Callable[[T_template_test], T_template_test]:
"""A decorator that is used to register custom template test.
You can specify a name for the test, otherwise the function
name will be used. Example::
@app.template_te... | /usr/src/app/target_test_cases/failed_tests_app.template_test.txt | def template_test(
self, name: str | None = None
) -> t.Callable[[T_template_test], T_template_test]:
"""A decorator that is used to register custom template test.
You can specify a name for the test, otherwise the function
name will be used. Example::
@app.template_te... | app.template_test | repository-level | external |
flask | 20 | src/flask/sansio/blueprints.py | def register(self, app: App, options: dict[str, t.Any]) -> None:
"""Called by :meth:`Flask.register_blueprint` to register all
views and callbacks registered on the blueprint with the
application. Creates a :class:`.BlueprintSetupState` and calls
each :meth:`record` callback with it.... | /usr/src/app/target_test_cases/failed_tests_blueprints.Blueprint.register.txt | def register(self, app: App, options: dict[str, t.Any]) -> None:
"""Called by :meth:`Flask.register_blueprint` to register all
views and callbacks registered on the blueprint with the
application. Creates a :class:`.BlueprintSetupState` and calls
each :meth:`record` callback with it.... | blueprints.Blueprint.register | repository-level | external |
flask | 21 | src/flask/sansio/blueprints.py | def register_blueprint(self, blueprint: Blueprint, **options: t.Any) -> None:
"""Register a :class:`~flask.Blueprint` on this blueprint. Keyword
arguments passed to this method will override the defaults set
on the blueprint.
.. versionchanged:: 2.0.1
The ``name`` option... | /usr/src/app/target_test_cases/failed_tests_blueprints.register_blueprint.txt | def register_blueprint(self, blueprint: Blueprint, **options: t.Any) -> None:
"""Register a :class:`~flask.Blueprint` on this blueprint. Keyword
arguments passed to this method will override the defaults set
on the blueprint.
.. versionchanged:: 2.0.1
The ``name`` option... | blueprints.register_blueprint | repository-level | external |
flask | 22 | src/flask/cli.py | def load_dotenv(path: str | os.PathLike[str] | None = None) -> bool:
"""Load "dotenv" files in order of precedence to set environment variables.
If an env var is already set it is not overwritten, so earlier files in the
list are preferred over later files.
This is a no-op if `python-dotenv`_ is not i... | /usr/src/app/target_test_cases/failed_tests_cli.load_dotenv.txt | def load_dotenv(path: str | os.PathLike[str] | None = None) -> bool:
"""Load "dotenv" files in order of precedence to set environment variables.
If an env var is already set it is not overwritten, so earlier files in the
list are preferred over later files.
This is a no-op if `python-dotenv`_ is not i... | cli.load_dotenv | self-contained | external |
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