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""" WIP method to predict column embeddings using remainder of row as context """ import pandas as pd import fasttext from scipy.spatial import distance from itertools import product import sys import numpy as np from configurations import * from tuple_embedding_models import AutoEncoderTupleEmbedding, AutoEncoderTuple...
pd.read_csv(table_files[0])
pandas.read_csv
# Copyright (c) 2018-2021, NVIDIA CORPORATION. import array as arr import datetime import io import operator import random import re import string import textwrap from copy import copy import cupy import numpy as np import pandas as pd import pyarrow as pa import pytest from numba import cuda import cudf from cudf.c...
pd.DataFrame({"first_col": [], "second_col": [], "third_col": []})
pandas.DataFrame
import pandas from google.cloud import bigquery from google_pandas_load import LoadConfig from tests.context.loaders import gpl1, gpl2, gpl3, gpl4, gpl5 from tests.context.resources import project_id, bq_client, \ dataset_ref, dataset_name from tests.utils import BaseClassTest, populate_dataset, \ populate, pop...
pandas.DataFrame(data={'x': [3]})
pandas.DataFrame
# -*- coding: utf-8 -*- import os import sys import pandas as pd import numpy as np import json # webscraping import requests import wget from bs4 import BeautifulSoup from selenium import webdriver from datetime import datetime, timedelta import time from tqdm import tqdm # if __package__: # from ..imports imp...
pd.DataFrame()
pandas.DataFrame
import pandas as pd import numpy as np import matplotlib.pyplot as plt import os from pathlib import Path from itertools import islice class My_dict(dict): def __init__(self): self = dict() def add(self, key, value): self[key] = value class Df(): def __init__(self, raw_data_location): ...
pd.DataFrame()
pandas.DataFrame
import numpy as np import pandas as pd import streamlit as st import importlib import os import sys import time def file_selector(folder_path='.'): filenames = os.listdir(folder_path) filenames_ = [f for f in filenames if f[-3:] == "txt"] selected_filename = st.selectbox('Select a file', filenames_) ...
pd.DataFrame({"TAGS":new_tag}, index=[0])
pandas.DataFrame
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Fri Dec 6 10:25:47 2019 @author: <NAME> Input files: host and pathogen quantification tables (e.g. pathogen_quant_salmon.tsv, host_quantification_uniquely_mapped_htseq.tsv), raw read statistics, star statistics Output file: tsv file Description: Used to ...
pd.read_csv(args.cross_mapped,sep="\t", header=None, index_col=0, names=['cross_mapped_reads'])
pandas.read_csv
#! /usr/bin/env python import cyvcf2 import argparse import sys from collections import defaultdict, Counter import pandas as pd import signal import numpy as np from shutil import copyfile import pyfaidx from random import choice from pyliftover import LiftOver from Bio.Seq import reverse_complement from mutyper imp...
pd.DataFrame(ksfs_data, index)
pandas.DataFrame
# -*- coding: utf-8 -*- """experiment0_baseline_nn Automatically generated by Colaboratory. Original file is located at https://colab.research.google.com/drive/1fD-X5sxQmLpGu1VhKF6I73vLX7swU2kV """ """### Imports""" import numpy as np import matplotlib.pyplot as plt import random from sklearn.model_selection im...
pd.DataFrame({'Labels':labels, "precision":precision, "recall":recall, "f1":f1 })
pandas.DataFrame
#! /usr/bin/env python # -*- coding: utf-8 -*- """ Aplicación para resolver el Challenge Python L1 Desarrollado por <NAME> version 1.0 Bitacora: fecha: 2021-02-27 observacion: Version 1 por: <NAME> """ import requests import pandas as pd import json import hashlib from datetime im...
pd.DataFrame(data=respuestaJson)
pandas.DataFrame
import numpy as np import pandas as pd import random as random import pickle def formatRank_german(df): tmp = pd.DataFrame() tmp['y']=df.sort_values('y_pred',ascending=False).index tmp['y_pred']=tmp.index tmp['g']=df.sort_values('y_pred',ascending=False).reset_index()['g'] return tmp def forma...
pd.read_pickle(inpath+'FairRanking03PercentProtected.pickle')
pandas.read_pickle
import dash import dash_core_components as dcc import dash_html_components as html import dash_bootstrap_components as dbc import plotly.graph_objs as go import pandas as pd import sqlite3 from dash.dependencies import Input, Output, State import time # import datetime from datetime import datetime from pandas import S...
pd.DataFrame({'DATE':df_100_count.index, '100 Degree Days':df_100_count.values})
pandas.DataFrame
import os import datetime import pandas as pd from dataactcore.config import CONFIG_BROKER from dataactcore.scripts import load_duns_exec_comp from dataactcore.models.domainModels import DUNS from dataactcore.utils.duns import DUNS_COLUMNS, EXCLUDE_FROM_API def mock_get_duns_props_from_sam(duns_list): """ Mock f...
pd.DataFrame(columns=columns)
pandas.DataFrame
from __future__ import print_function import os import pandas as pd import xgboost as xgb import time import shutil from sklearn import preprocessing from sklearn.cross_validation import train_test_split import numpy as np from sklearn.utils import shuffle def archive_results(filename,results,algo,script): """ ...
pd.DataFrame({"patient_id": id_test, 'predict_screener': predictions})
pandas.DataFrame
import numpy as np # deal with data import pandas as pd # deal with data import re # regular expression from bs4 import BeautifulSoup # resolver review from nltk.corpus import stopwords # Import the stop word list from gensim.models import word2vec# use word2Vec(...
pd.DataFrame(columns=["T2V", "ZeroR", "Random Guessing"])
pandas.DataFrame
""" Código para crear las variables de decisión del baseline """ import pandas as pd import time from baseline_ajustes import variables_decision_nacional, variables_decision_exp from limpieza_masters import limpieza_data, ajustar_tarifario from output import guardar_outputs # Carga de datos. Retorna diccionario de DFs...
pd.concat([decision_nal, decision_exp])
pandas.concat
# -*- coding: utf-8 -*- # Copyright (c) Microsoft Corporation. All rights reserved. # Licensed under the MIT License. # Author: <EMAIL> from mlhub.pkg import mlask, mlcat MOVIELENS = '100k' # Select Movielens data size: 100k, 1m, 10m, or 20m. TOPK = 10 # Top k items to recommend. TITLEN = 45 # Trunca...
pd.to_numeric(topk['MovieId'])
pandas.to_numeric
import unittest from unittest.mock import patch, PropertyMock import time import mt5_correlation.correlation as correlation import pandas as pd from datetime import datetime, timedelta from test_mt5 import Symbol import random import os class TestCorrelation(unittest.TestCase): # Mock symbols. 4 Symbols, 3 visibl...
pd.DataFrame(columns=columns, data=[[starttime, price_base * 0.1]])
pandas.DataFrame
import datetime import numpy as np import pandas as pd import pandas.testing as pdt from cape_privacy.pandas import dtypes from cape_privacy.pandas.transformations import DateTruncation from cape_privacy.pandas.transformations import NumericRounding def _make_apply_numeric_rounding(input, expected_output, ctype, dt...
pd.DataFrame({"date": [input_date]})
pandas.DataFrame
# -*- coding: utf-8 -*- # Copyright 2017 The <NAME>. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless require...
pd.read_csv('dataset/%s.csv' % f)
pandas.read_csv
import base64 import io import textwrap import dash import dash_core_components as dcc import dash_html_components as html import gunicorn import plotly.graph_objs as go from dash.dependencies import Input, Output, State import flask import pandas as pd import urllib.parse from sklearn.preprocessing import StandardSca...
pd.DataFrame(data=features_outlier, columns=['line_group'])
pandas.DataFrame
import pandas as pd import numpy as np from time import perf_counter from utils import View, Rule class DataReader: def __init__(self, raw_data_path='data/unigram_freq.csv', data_path='data/data.csv'): # https://www.kaggle.com/rtatman/english-word-frequency # This dataset was well sorted by freque...
pd.read_csv(self.data_path)
pandas.read_csv
# -*- coding: utf-8 -*- """ This module contains the ReadSets class that is in charge of reading the sets files, reshaping them to be used in the build class, creating and reading the parameter files and checking the errors in the definition of the sets and parameters """ import itertools as it from openpyxl import lo...
pd.Index(self.main_years, name="Years")
pandas.Index
import numpy as np # We recommend to use numpy arrays import gc import pandas as pd import time from multiprocessing import Pool from sklearn.feature_extraction.text import CountVectorizer from sklearn.model_selection import train_test_split #from gensim.models.word2vec import Word2Vec from sklearn.model_s...
pd.concat([df, data_vec], axis=1)
pandas.concat
# coding: utf-8 import logging import multiprocessing import os import pickle import sys import time from math import sqrt import enchant import numpy as np import codecs import simplejson import pandas as pd from glob import glob from nltk import word_tokenize from nltk.corpus import stopwords from nltk.tokenize impo...
pd.read_pickle(self.lexicons_output)
pandas.read_pickle
# -------------------------------------------------- ML 02/10/2019 ----------------------------------------------------# # # This is the class for poisson process # # -------------------------------------------------------------------------------------------------------------------- # import numpy as np import pandas ...
pd.DataFrame([p])
pandas.DataFrame
"""This module contains auxiliary functions for the creation of tables in the main notebook.""" import json import scipy import numpy as np from numpy import nan import pandas as pd import pandas.io.formats.style import seaborn as sns import statsmodels as sm import statsmodels.formula.api as smf import statsmodels.ap...
pd.DataFrame()
pandas.DataFrame
"""Backtesting Controller Module""" __docformat__ = "numpy" import argparse import os from typing import List import matplotlib as mpl import matplotlib.pyplot as plt import pandas as pd from prompt_toolkit.completion import NestedCompleter from gamestonk_terminal import feature_flags as gtff from gamestonk_terminal...
pd.DataFrame()
pandas.DataFrame
import os import sys import argparse import pandas as pd from utils import simplify_string_for_hdf5 parser = argparse.ArgumentParser(description='S-PrediXcan results processor.') parser.add_argument('--spredixcan-hdf5-folder', required=True, type=str) parser.add_argument('--spredixcan-hdf5-file-template', required=...
pd.read_csv(args.phenotypes_info_file, sep='\t', index_col='pheno_id')
pandas.read_csv
import numpy as np import pandas as pd import matplotlib.pyplot as plt import seaborn as sns import pickle import os import yaml from sklearn.metrics import mean_squared_error from sklearn.metrics import mean_absolute_error from sklearn.metrics import r2_score # from .utils import Boba_Utils as u # from ._03_Modeling ...
pd.merge(evaluation_df,temp_df,left_index=True,right_index=True)
pandas.merge
import pandas as pd from pandas import DataFrame import sys #-------- # Imports medi dataset with icd9 and rxcui descriptions to .csv file # PARAMETERS: # medi = medi spreadsheet # icd9_desc = contains icd9 codes and their descriptions # rxcui_desc = contains rxcui codes and their descriptions def add_info_to_medi(med...
pd.merge(df_rxcui_icd9, drug_rxcui, how='left', on='RXCUI_IN')
pandas.merge
# coding: utf-8 import json import pandas as pd import numpy as np import glob import ast from modlamp.descriptors import * import re import cfg import os def not_in_range(seq): if seq is None or len(seq) < 1 or len(seq) > 80: return True return False def bad_terminus(peptide): if peptide.nTermi...
pd.concat([combined_toxic_neg, commont])
pandas.concat
#!/usr/bin/env python # -*- encoding: utf-8 -*- # Copyright 2011-2020, <NAME> # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless re...
Series([record[field] for record in self], index=index, dtype=dtype)
pandas.Series
# Copyright 2021 AI Singapore. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or...
pd.DataFrame([[0.1, 2.5, 3.6], [0.5, 2.2, 6.6]], columns=['x1', 'x2', 'x3'])
pandas.DataFrame
################################################################################ # Module: schedule.py # Description: Functions for handling conversion of EnergyPlus schedule objects # License: MIT, see full license in LICENSE.txt # Web: https://github.com/samuelduchesne/archetypal #####################################...
pd.Series([False] * periods, index=index)
pandas.Series
# author: DSCI-522 Group-21 # date: 2021-11-26 """Score the model with the test set and generate a confusion matrix Usage: scoring.py --input=<input> --output=<output> Options: --input=<input> The directory where the data and model is --output=<output> Directory specifying where to store output figure(s)...
pd.DataFrame(scores, index=["test_scores"])
pandas.DataFrame
#!/usr/bin/env python3 import cv2 # from cv2 import aruco from tqdm import trange import numpy as np import os, os.path from glob import glob from collections import defaultdict import pandas as pd ## TODO: rewrite this whole file with aniposelib from .common import \ get_calibration_board, get_board_type, \ ...
pd.DataFrame()
pandas.DataFrame
# Copyright (c) 2016 The UUV Simulator Authors. # All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required b...
pandas.concat([df_input, df_output, df_wrench], ignore_index=True)
pandas.concat
#!/usr/bin/env python # -- coding: utf-8 -- # PAQUETES PARA CORRER OP. import netCDF4 import pandas as pd import numpy as np import datetime as dt import json import wmf.wmf as wmf import hydroeval import glob import MySQLdb #modulo pa correr modelo import hidrologia from sklearn.linear_model import LinearRegression ...
pd.to_datetime(start)
pandas.to_datetime
""" Creates a new Database """ import re from app import APPLOG import pandas as pd from core.settings import ( DB_MOD, DB_DIR, ARTLIST_DIR, SQL_T_ARTLIST, SQL_T_BOM, SQL_CONN, ) from sqlalchemy import create_engine def createBomDB(bom_df: pd.DataFrame, items_df: pd.DataFrame) -> tuple: ""...
pd.to_numeric(bom_df["childqty"], errors="coerce")
pandas.to_numeric
r"""Submodule frequentist_statistics.py includes the following functions: <br> - **normal_check():** compare the distribution of numeric variables to a normal distribution using the Kolmogrov-Smirnov test <br> - **correlation_analysis():** Run correlations for numerical features and return output in different forma...
pd.DataFrame(df_normality_check)
pandas.DataFrame
# coding=utf-8 # pylint: disable-msg=E1101,W0612 from datetime import timedelta from numpy import nan import numpy as np import pandas as pd from pandas import (Series, isnull, date_range, MultiIndex, Index) from pandas.tseries.index import Timestamp from pandas.compat import range from pandas.u...
Timestamp('20130103 9:01:01')
pandas.tseries.index.Timestamp
import pandas as pd import psycopg2 import pickle import numpy as np # counterS = 0 # global counterS # global valGlob # from sqlalchemy import create_engine # -*- coding: utf-8 -*- import os import sys import copy # fileName = '/Users/alessandro/Documents/PhD/OntoHistory/WDTaxo_October2014.csv' # connection paramet...
pd.read_sql(classesDataQuery, con=conn)
pandas.read_sql
""" test get/set & misc """ from datetime import timedelta import re import numpy as np import pytest from pandas import ( DataFrame, IndexSlice, MultiIndex, Series, Timedelta, Timestamp, date_range, period_range, timedelta_range, ) import pandas._testing as tm def test_basic_ind...
Timedelta("1 days")
pandas.Timedelta
# Copyright 1999-2020 Alibaba Group Holding Ltd. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or a...
pd.testing.assert_frame_equal(result, raw)
pandas.testing.assert_frame_equal
# -*- coding: utf-8 -*- import sys import os import random import pdb import glob import numpy as np import pandas as pd from skimage import io from skimage.color import rgba2rgb from . import util from .util import kconfig from .transformers import resize_image #----------------------------------------------...
pd.DataFrame(data=test_info, columns=columns)
pandas.DataFrame
#=============================================== # PROJETO <NAME> # funcoes para preprocessamento e visualizacao # # @claudioalvesmonteiro #=============================================== # funcao para gerar dummies com base em threshold def categoryToDummyThreshold(dataframe, data, column, threshold): import pand...
pd.get_dummies(dataframe[('SIG_'+column)], prefix=column)
pandas.get_dummies
import sys import click import requests, requests_cache import configparser import pandas as pd import matplotlib.pyplot as plt import seaborn as sns from pathlib import Path from datetime import datetime from mpl_toolkits.axes_grid1 import make_axes_locatable from pynance.auth import signed_params from pynance.util...
pd.to_datetime(trades.time, unit="ms")
pandas.to_datetime
import matplotlib.pyplot as plt import seaborn as sns import pdb import requests import re import threading import concurrent.futures import numpy as np import pandas as pd from functools import reduce from collections import Counter from sklearn.preprocessing import normalize, StandardScaler, Normalizer, RobustSca...
pd.DataFrame(edge_weights, columns=["source_node", "target_node", "edge_weight"])
pandas.DataFrame
from binance.client import Client import keys from pandas import DataFrame as df from datetime import datetime import trading_key client=Client(api_key=keys.Pkeys, api_secret=keys.Skeys) #get candle data def candle_data(symbols, intervals): candles=client.get_klines(symbol=symbols, interval=interv...
df(final_date)
pandas.DataFrame
# Copyright (c) Microsoft Corporation. # Licensed under the MIT License. import os import math import itertools import pandas as pd import datetime from fclib.dataset.retail.benchmark_paths import DATA_DIR import fclib.dataset.retail.benchmark_settings as bs # Utility functions def week_of_month(dt): """Get the ...
pd.DataFrame.from_records(item_list, columns=["store", "brand", "week"])
pandas.DataFrame.from_records
# -*- coding: utf-8 -*- """ Created on Mon Oct 12 16:44:24 2020 @author: Borja """ import os import pandas as pd import numpy as np import matplotlib.pyplot as plt """ - Ultra Trail Mont Blanc. Clasificación desde 2003 hasta 2017. https://www.kaggle.com/ceruleansea/ultratrail-du-montblanc-20032017?select...
pd.read_csv('Data/csv/utmb_2008.csv', sep=',', decimal='.')
pandas.read_csv
# -*- coding: utf-8 -*- """ Spyder Editor This is a temporary script file. """ from __future__ import division from datetime import datetime from sklearn import linear_model import pandas as pd import numpy as np import scipy.stats as st import statsmodels.distributions.empirical_distribution as edis import seaborn a...
pd.read_csv('Synthetic_weather/synthetic_weather_data.csv',header=0)
pandas.read_csv
#!/usr/bin/env python # coding: utf-8 # # This will create plots for institutions of universities in THE WUR univs only and for the period of 2007-2017. The input dataset contains info of THE WUR univs only but for any period of time. # #### The unpaywall dump used was from (April or June) 2018; hence analysis until ...
pd.concat([univ_papers_df_set1, univ_papers_df_set2])
pandas.concat
""" Created on Mon Mar 23 17:06:41 2020 @author: diego """ from mip import * import os import pandas as pd import numpy as np import subprocess # from .Configurations import Gurobi_license_path # os.environ['GRB_LICENSE_FILE'] = Gurobi_license_path #list_of_inputs # # P : number of working shifts # T : time horizon...
pd.DataFrame.from_records([y_opt_1t,y_opt_2t])
pandas.DataFrame.from_records
#!/usr/bin/env python """ analyse Elasticsearch query """ import json from elasticsearch import Elasticsearch from elasticsearch import logger as es_logger from collections import defaultdict, Counter import re import os from datetime import datetime # Preprocess terms for TF-IDF import numpy as np import pandas as pd...
pd.Grouper(key="date", freq="W")
pandas.Grouper
#---------------------------------------------------------------------------------------------- #################### # IMPORT LIBRARIES # #################### import streamlit as st import pandas as pd import numpy as np import plotly as dd import plotly.express as px import seaborn as sns import matplotl...
pd.DataFrame()
pandas.DataFrame
import numpy as np import pandas as pd import pytest from pandas.testing import assert_frame_equal @pytest.fixture def df_checks(): """fixture dataframe""" return pd.DataFrame( { "famid": [1, 1, 1, 2, 2, 2, 3, 3, 3], "birth": [1, 2, 3, 1, 2, 3, 1, 2, 3], "ht1": [2....
assert_frame_equal(result, actual)
pandas.testing.assert_frame_equal
import re from unittest.mock import Mock, call, patch import numpy as np import pandas as pd import pytest from rdt.transformers.categorical import ( CategoricalFuzzyTransformer, CategoricalTransformer, LabelEncodingTransformer, OneHotEncodingTransformer) RE_SSN = re.compile(r'\d\d\d-\d\d-\d\d\d\d') class ...
pd.Series([0.125, 0.375, 0.625, 0.875], index=[4, 3, 2, 1])
pandas.Series
import pandas as pd df_ab = pd.DataFrame({'a': ['a_1', 'a_2', 'a_3'], 'b': ['b_1', 'b_2', 'b_3']}) df_ac = pd.DataFrame({'a': ['a_1', 'a_2', 'a_4'], 'c': ['c_1', 'c_2', 'c_4']}) print(df_ab) # a b # 0 a_1 b_1 # 1 a_2 b_2 # 2 a_3 b_3 print(df_ac) # a c # 0 a_1 c_1 # 1 a_2 c_2 # 2 a_4 c_4 ...
pd.merge(df_ab, df_ac, on='a', how='left')
pandas.merge
import pandas as pd import numpy as np from data import Data import pickle class Stats(): def __init__(self, data): '''Enter dataclass of pandas dataframe''' if isinstance(data, Data): self.df = data.df elif isinstance(data, pd.DataFrame): self.df = data ...
pd.DataFrame()
pandas.DataFrame
import pandas as pd import pandas.rpy.common as rcom import rpy2.robjects as robjects from rpy2.robjects.vectors import SexpVector, ListVector, StrSexpVector import rpy2.robjects.numpy2ri as numpy2ri import trtools.rpy.conversion as rconv import trtools.rpy.tools as rtools from trtools.rpy.rmodule import get_func, R...
pd.DataFrame(o, index=o.index)
pandas.DataFrame
# Arithmetic tests for DataFrame/Series/Index/Array classes that should # behave identically. from datetime import datetime, timedelta import numpy as np import pytest from pandas.errors import ( NullFrequencyError, OutOfBoundsDatetime, PerformanceWarning) import pandas as pd from pandas import ( DataFrame, ...
tm.box_expected(expected, xbox)
pandas.util.testing.box_expected
from bapiw.api import API from datetime import datetime, date import pandas as pd import numpy as np bapiw = API() class DataParser: # intervals used when calling kline data # https://github.com/binance-exchange/binance-official-api-docs/blob/master/rest-api.md#enum-definitions INTERVAL_1MIN = '1m' ...
pd.DataFrame.from_dict(kdata)
pandas.DataFrame.from_dict
#%% """Combine article data from json file into a single dataframe. """ import json import pandas as pd combined_df = pd.DataFrame() #columns=["Index_str", "Article_text"]) df = pd.read_csv("~/repo/StatMachLearn/NewsArticleClassification/data_to_group_copy.csv", header=0) domain_list = list(set(df['domain'].values)...
pd.DataFrame.from_dict(article_dict, orient="index")
pandas.DataFrame.from_dict
import nose import warnings import os import datetime import numpy as np import sys from distutils.version import LooseVersion from pandas import compat from pandas.compat import u, PY3 from pandas import (Series, DataFrame, Panel, MultiIndex, bdate_range, date_range, period_range, Index, Categori...
bdate_range('2013-01-02', periods=10)
pandas.bdate_range
import copy import pandas as pd from bokeh.plotting import figure, show, output_notebook from bokeh.models import Legend, Span # from bokeh.models import HoverTool from ..utils import in_ipynb from .plotobj import BasePlot from .plotutils import get_color _INITED = False class BokehPlot(BasePlot): def __init__(s...
pd.concat([df_bottom, df_top], ignore_index=True)
pandas.concat
import itertools import pathlib import numpy as np import pandas as pd import os from statistics import median_low import click import re # Unimod parsing import xml.etree.cElementTree as ET from xml.etree.cElementTree import iterparse # mzXML parsing import pyopenms as po class pepxml: def __init__(self, pepxml_f...
pd.concat(peaks_list)
pandas.concat
import inspect import os import sys import time import unittest import warnings from concurrent.futures.process import ProcessPoolExecutor from contextlib import contextmanager from glob import glob from runpy import run_path from tempfile import NamedTemporaryFile, gettempdir from unittest import TestCase from unittes...
pd.Timestamp('2013-03-01 00:00:00')
pandas.Timestamp
import glob import os import random import soundfile as sf import torch import yaml import json import argparse import pandas as pd from tqdm import tqdm from pprint import pprint from asteroid.metrics import get_metrics from model import load_best_model from local.preprocess_dns import make_wav_id_dict parser = arg...
pd.Series(utt_metrics)
pandas.Series
import pathlib import yaml import pandas as pd from clumper import Clumper from parse import compile as parse_compile def nlu_path_to_dataframe(path): """ Converts a single nlu file with intents into a dataframe. Usage: ```python from taipo.common import nlu_path_to_dataframe df = nlu_path_to...
pd.DataFrame(res)
pandas.DataFrame
import numpy as np import pandas as pd import datetime as dt import matplotlib.pyplot as plt import matplotlib.dates as date import seaborn as sns from scipy import stats sns.set_context('talk') data_crime_raw = pd.read_csv('.\\NYPD_Complaint_Data_Historic.csv', usecols=['CMPLNT_FR_DT', ...
pd.to_datetime(data_crime_raw['CMPLNT_FR_DT'], format='%m/%d/%Y', errors='coerce')
pandas.to_datetime
from time import time import pandas as pd from numpy import arange results_df = pd.read_csv('../data/botbrnlys-rand.csv') def extract_best_vals_index(results_df, df, classifier, hp): final_df = pd.DataFrame() temp_df = results_df[results_df.model == classifier] temp_df_f = temp_df[temp_df.hp.round(3) == ...
pd.read_csv('../data/' + classifier + '0_results-nb.csv')
pandas.read_csv
""" Script that contains the functions to perform sensitivity analysis. """ import itertools import numpy as np import pandas as pd from sklearn.metrics import mean_squared_error ##### GLOBAL VARIABLES ##### legs = ['LF', 'LM', 'LH', 'RF', 'RM', 'RH'] joints = [ 'Coxa', 'Coxa_yaw', 'Coxa_roll', 'Femur...
pd.DataFrame(leg_mse, columns=['Leg', 'Kp', 'Kv', 'MSE'])
pandas.DataFrame
# # Copyright 2015 Quantopian, Inc. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in wr...
pd.concat([SPLITS, MERGERS, DIVIDENDS_EXPECTED], ignore_index=True)
pandas.concat
import os import numpy as np import pandas as pd import matplotlib.pyplot as plt plt.rcParams.update({'font.size': 18}) from textwrap import wrap def plot_metrics_bar(result_dirs, plot_dir, metrics="Acc", prefix="pancreas", groupby="features"): '''Plot Acc, ARI, macroF1 for different methods x-axis is...
pd.read_csv(result_dir+os.sep+method+suffix)
pandas.read_csv
from operator import eq, ge from functools import partial import pandas as pd from microsetta_public_api.resources import resources ops = { 'equal': eq, 'greater_or_equal': ge, } conditions = { "AND": partial(pd.DataFrame.all, axis=1), "OR": partial(pd.DataFrame.any, axis=1) } def _is_rule(node): ...
pd.Series(True, index=self._metadata.index)
pandas.Series
import numpy as np import pandas as pd from dateutil.parser import parse import tldextract def replace_basic_columns(dataframe): pd.set_option('mode.chained_assignment', None) dataframe["title"] = np.nan dataframe["description"] = np.nan dataframe["image"] = np.nan for index in dataframe.index:...
pd.isnull(dataframe['meta_image'][index])
pandas.isnull
import functools import warnings import matplotlib.pyplot as plt import numpy as np import seaborn as sns import pandas as pd import os from scipy.stats import poisson import tensorflow.compat.v2 as tf import tensorflow_probability as tfp from tensorflow_probability import distributions as tfd from tensorflow_proba...
pd.read_csv(gene_fname, index_col=0)
pandas.read_csv
import os import joblib import numpy as np import pandas as pd from joblib import Parallel from joblib import delayed from Fuzzy_clustering.version2.common_utils.logging import create_logger from Fuzzy_clustering.version2.dataset_manager.common_utils import check_empty_nwp from Fuzzy_clustering.version2.dataset_manag...
pd.DateOffset(hours=1)
pandas.DateOffset
import os import numpy as np import pandas as pd import lightgbm as lgb from sklearn.feature_extraction.text import TfidfVectorizer from sklearn.linear_model import LogisticRegression, RidgeClassifierCV, ElasticNetCV, LassoCV, LassoLarsCV from sklearn.svm import SVC from sklearn.model_selection import cross_val_score ...
pd.read_table('../data/raw/train.tsv', sep='\t')
pandas.read_table
# -*- coding: utf-8 -*- from __future__ import print_function from distutils.version import LooseVersion from numpy import nan, random import numpy as np from pandas.compat import lrange from pandas import (DataFrame, Series, Timestamp, date_range) import pandas as pd from pandas.util.testing im...
tm.assert_series_equal(smaller_frame['foo'], exp)
pandas.util.testing.assert_series_equal
import datetime import logging import pandas import sqlobject def get_last_values(currency, frecuency, count=None): """Get last values.""" logging.debug('nb_values: %d', count) result = Bollinger.select( Bollinger.q.currency == currency ).orderBy(Bollinger.q.date_time) if count: ...
pandas.Series(values[-frequency:])
pandas.Series
import warnings import numpy as np def to_dataframe(result): with warnings.catch_warnings(): warnings.simplefilter("ignore") import pandas as pd def collection_to_dataframe(n, x): n = str(n).replace('[', '(').replace(']', ')') df =
pd.DataFrame()
pandas.DataFrame
import unittest import pickle import pathlib import cobra import pandas as pd from BFAIR.mfa.sampling import ( model_rxn_overlap, rxn_coverage, split_lumped_rxns, split_lumped_reverse_rxns, find_reverse_rxns, combine_split_rxns, cobra_add_split_rxns, add_constraints, add_feasible_con...
pd.DataFrame({"rxn_id": "Biomass"}, index=[0])
pandas.DataFrame
#!/usr/bin/env python # coding: utf-8 # # SW 1700 # In[2]: import numpy as np import os #import ipdb def connect_dataset(file_list, icond_file_list, outputdir, topodx=15, roi=2500, offset=5000,gclass_num=5,test_data_num=500): """ 複数のデータセットを連結する """ #ipdb.set_trace() #Re...
pd.read_csv('../Journal_2/Thai_gs5.csv')
pandas.read_csv
import sys import pandas as pd import numpy as np import json from sqlalchemy import create_engine def load_data(messages_filepath, categories_filepath): ''' This function load the datasets messages and categories and merge based on id column. Params: messages_filepath (str): String ...
pd.read_csv(categories_filepath)
pandas.read_csv
import sys import csv import pandas as pd import ctdcal.sbe_reader as sbe_rd import ctdcal.sbe_equations_dict as sbe_eq import gsw DEBUG = False #lookup table for sensor data ###DOUBLE CHECK TYPE IS CORRECT### short_lookup = { '55':{'short_name': 'CTDTMP', 'long_name':'SBE 3+ Temperature', 'units': 'ITS-90', 'typ...
pd.read_csv(file_name, index_col=0, skiprows=[1], parse_dates=False)
pandas.read_csv
import os import joblib import numpy as np import pandas as pd from joblib import Parallel from joblib import delayed from Fuzzy_clustering.version2.common_utils.logging import create_logger from Fuzzy_clustering.version2.dataset_manager.common_utils import check_empty_nwp from Fuzzy_clustering.version2.dataset_manag...
pd.DateOffset(hours=24)
pandas.DateOffset
import ibeis import six import vtool import utool import numpy as np import numpy.linalg as npl # NOQA import pandas as pd from vtool import clustering2 as clustertool from vtool import nearest_neighbors as nntool from plottool import draw_func2 as df2 np.set_printoptions(precision=2) pd.set_option('display.max_rows',...
pd.Series(invindex.ax2_aid[invindex.idx2_ax], name='daid')
pandas.Series
# --- # jupyter: # jupytext: # formats: ipynb,py # text_representation: # extension: .py # format_name: light # format_version: '1.5' # jupytext_version: 1.6.0 # kernelspec: # display_name: Python 3 # language: python # name: python3 # --- # ## Telecom Churn Case Study #...
pd.get_dummies(telecom['MultipleLines'], prefix='MultipleLines')
pandas.get_dummies
"""Class to process raw TomTom MultiNet data into a network dataset. Copyright 2022 Esri Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICEN...
pd.DataFrame(cur, columns=fields)
pandas.DataFrame
''' Create a csv with inspection report, permit_id, date, time, inspec type, critical violation count, non-crit violation count, crit violation corrected on site, non-crit violation corrected on site, crit violation to be resolved, non-crit violation to be resolved, critical violation repeat violation, and non-crit vio...
pd.read_csv('cleaned_report_results.csv')
pandas.read_csv
from typing import List, Any from itertools import chain from app_utils import AppFileHandler import pandas as pd import sqlite3 import logging import os import re pd.set_option('display.max_rows', None) class SansNotesApp(AppFileHandler): APP_FILES = os.path.join(os.getcwd(),'SansNotesAppFiles') APP_DATABAS...
pd.DataFrame(search_table_data,columns=[tuple[0] for tuple in self.__cur.description])
pandas.DataFrame
import inspect import re from functools import wraps from typing import Union, Any, List from uuid import uuid4 import pandas import sys from .six import string_types, integer_types from .fields import (FIELD_DATAFRAME, FIELD_TEXT, FIELD_NUMERIC, FIELD_NO_INPUT, FIELD_SELECT, FIELD_SELECT_MULTIPL...
pd.Series(result)
pandas.Series
import pytest from vetiver.vetiver_model import VetiverModel from vetiver.mock import get_mock_data, get_mock_model import pandas as pd from numpy import int64 # Load data, model X_df, y = get_mock_data() X_array =
pd.DataFrame(X_df)
pandas.DataFrame
#!/usr/bin/env python3 # Author: <NAME> import numpy as np import pandas as pd import scipy.stats as stats import warnings def normalize_quantiles(df): """ Quantile normalization to the average empirical distribution Note: replicates behavior of R function normalize.quantiles from library("preprocessCore")...
pd.DataFrame(M, index=df.index, columns=df.columns)
pandas.DataFrame
import pandas as pd from mfy_data_core.adapters.es_index_store import ESIndexStore from mfy_data_core_fakes.adapters.fake_storage import FakeIndexStore, FakeEsPandasClient, FakeObjectStore def test_fake_index_store(): index_store = FakeIndexStore() df =
pd.DataFrame([{"col1": "A", "col2": "B"}])
pandas.DataFrame
# -*- coding: utf-8 -*- """ Created on Wed May 16 12:39:55 2018 @author: malopez """ import math import numba import numpy as np import pandas as pd from collisionTimes import CollisionDetector from measure import MeasureClass n_particles = 50 class EventList(): def __init__(self, n_particles, particle_radiu...
pd.concat((part_i, wallLeft, dt, eventType), axis=1)
pandas.concat
""" A warehouse for constant values required to initilize the PUDL Database. This constants module stores and organizes a bunch of constant values which are used throughout PUDL to populate static lists within the data packages or for data cleaning purposes. """ import pandas as pd import sqlalchemy as sa ##########...
pd.BooleanDtype()
pandas.BooleanDtype