genome_name
string | contig_name
list | dna_sequence
string | start
list | end
list | locus_tag
list | strand
list | genome_completeness
string | genome_lineage
string | genome_sample_accession
string | genome_study_accession
string | country
string | family
string | genus
string | species
string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MGYG000047859
| ["MGYG000047859_1","MGYG000047859_2","MGYG000047859_3","MGYG000047859_4","MGYG000047859_5","MGYG0000(...TRUNCATED)
| "CCTTGTGCGTCCTCGTTGGCGCCGGGGCCTTCGCCCACAAAAAGAACCTCGGCGTCCGGCACACCCTGCCCAAACACCACATGGGTGCGGGTCTCACAC(...TRUNCATED)
| [["10420","11303","1151","12316","14386","15133","16039","17110","20627","21698","22599","23248","24(...TRUNCATED)
| [["11283","12217","1633","13689","15000","15780","16770","20568","21580","22561","23258","25647","36(...TRUNCATED)
| [["lacG","lacF_1","Unknown","yesO_1","tdk","rex","tepA","Unknown","comEC","metF","Unknown","metH","s(...TRUNCATED)
| [["-","-","+","-","-","-","+","+","+","+","+","+","+","+","-","-","-","-","-","+"],["-","-","-","-",(...TRUNCATED)
|
67.22
| "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger;s__Gemm(...TRUNCATED)
|
SRS1820443
|
SRP093965
|
United States
|
Ruminococcaceae
|
Gemmiger
|
Gemmiger qucibialis
|
MGYG000047890
| ["MGYG000047890_1","MGYG000047890_2","MGYG000047890_3","MGYG000047890_4","MGYG000047890_5","MGYG0000(...TRUNCATED)
| "ATTTTTTATCTTCTTGATTATCTACTTCATTAGATTTAATACCTTCATTATTTGAATTAAAGAAATCTTTGAAAGTCTTATTATGGGTCATGTAGTTTC(...TRUNCATED)
| [["10232","11039","11806","12104","14275","14987","15555","16151","17197","19370","19928","21195","2(...TRUNCATED)
| [["10999","11764","12033","13984","14982","15553","16112","16846","18804","19924","21040","25445","2(...TRUNCATED)
| [["Unknown","Unknown","Unknown","dxs","pyrH","resA_1","frr","Unknown","pckA","Unknown","hemN","Unkno(...TRUNCATED)
| [["+","+","-","-","+","+","+","+","-","+","+","+","-","+","+","+","+","-","+","-","-","+","-","-","+(...TRUNCATED)
|
98.8
| "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alisti(...TRUNCATED)
|
SRS1719289
|
SRP090628
|
Estonia
|
Rikenellaceae
|
Alistipes
|
Alistipes onderdonkii
|
MGYG000047948
| ["MGYG000047948_1","MGYG000047948_2","MGYG000047948_3","MGYG000047948_4","MGYG000047948_5","MGYG0000(...TRUNCATED)
| "TCTACACTCGACTAGTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGACAAAAAGATATGCACATCTTAATTTATTATTGAGTTCTTTTGGAAAAAAT(...TRUNCATED)
| [["10134","103030","104120","105093","106159","106761","107898","111954","11291","113652","115300","(...TRUNCATED)
| [["11144","104040","105100","105899","106728","107840","111950","113576","12217","114833","116550","(...TRUNCATED)
| [["secF","Unknown","Unknown","metN","Unknown","carA","dapF","pyrG","znuA","dapL","clcB","Unknown","U(...TRUNCATED)
| [["+","+","+","+","+","+","+","+","+","+","-","-","-","+","+","-","-","+","+","+","+","+","+","+","+(...TRUNCATED)
|
97.32
| "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_(...TRUNCATED)
|
SRS1876538
|
SRP095580
|
Netherlands
|
Acutalibacteraceae
|
Ruminococcus_E
|
Ruminococcus_E sp003526955
|
MGYG000048037
| ["MGYG000048037_1","MGYG000048037_2","MGYG000048037_3","MGYG000048037_4","MGYG000048037_5","MGYG0000(...TRUNCATED)
| "CCGGACGGTTAAGCCTTGACTTTTTGGTTACTTTTGGGTCAAGCCAAAAGTAACATATCACAAAACAATTAAAACAACACACAAAATAATCAAGTATGA(...TRUNCATED)
| [["100173","103099","10343","104090","105004","105626","10629","106682","107092","109658","113683","(...TRUNCATED)
| [["102098","103986","10549","104950","105618","106642","12839","106996","109527","113653","114444","(...TRUNCATED)
| [["Unknown","Unknown","Unknown","lsrF","dhaL-2","dhaK","copA","Unknown","ccsA","egtB_1","Unknown","U(...TRUNCATED)
| [["-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","-","+","+","+","+(...TRUNCATED)
|
81.59
| "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s_(...TRUNCATED)
|
ERS1015675
|
ERP013562
|
China
|
Tannerellaceae
|
Parabacteroides
|
Parabacteroides merdae
|
MGYG000048063
| ["MGYG000048063_1","MGYG000048063_2","MGYG000048063_3","MGYG000048063_4","MGYG000048063_5","MGYG0000(...TRUNCATED)
| "GCGCTGAGATCGAGAACACCGACTCCGATTACGACCGTGAGAAGCTGCAGGAGCGTCTGGCCAAGCTGGCTGGCGGCGTGGCTGTCATCAAGGTCGGCG(...TRUNCATED)
| [["1001","101009","101979","102366","10269","102795","103761","104735","105637","106536","107411","1(...TRUNCATED)
| [["1852","101260","102200","102635","11588","103694","104606","105529","106530","107273","108304","1(...TRUNCATED)
| [["Unknown","Unknown","Unknown","mdeA","codA","qmcA","Unknown","yrpC","dapF","Unknown","yciV","Unkno(...TRUNCATED)
| [["+","+","+","+","-","+","-","-","+","-","+","-","-","+","-","+","+","+","+","+","+","+","+","+","-(...TRUNCATED)
|
52.07
| "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifido(...TRUNCATED)
|
SRS1820506
|
SRP093965
|
United States
|
Bifidobacteriaceae
|
Bifidobacterium
|
Bifidobacterium infantis
|
MGYG000048091
| ["MGYG000048091_1","MGYG000048091_2","MGYG000048091_3","MGYG000048091_4","MGYG000048091_5","MGYG0000(...TRUNCATED)
| "TGTGGCCCCACGCGCACAACCCCGCACCGCGTCGAAACAGCGGCAGTTTTCTTTGGTTCTTTCTTTTGCTGCCAAAAGAAAGAACAAGTTCCCGGGAGG(...TRUNCATED)
| [["10306","115","12616","14326","15014","1502","16316","17217","18240","2780","3289","6186","7097","(...TRUNCATED)
| [["12288","744","14067","15000","15766","2575","17224","18110","19205","3292","5865","7100","8779","(...TRUNCATED)
| [["cheB","Unknown","Unknown","phoU","pstB3","Unknown","Unknown","pstC","pstS2","Unknown","Unknown","(...TRUNCATED)
| [["+","-","+","-","-","-","-","-","-","-","-","-","-","-","-"],["+","+","+","-","-","-","+","-"],["-(...TRUNCATED)
|
66.97
| "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger;s__Gemm(...TRUNCATED)
|
SRS871961
|
SRP056054
|
Finland
|
Ruminococcaceae
|
Gemmiger
|
Gemmiger formicilis
|
MGYG000048103
| ["MGYG000048103_1","MGYG000048103_2","MGYG000048103_3","MGYG000048103_4","MGYG000048103_5","MGYG0000(...TRUNCATED)
| "GCGTTGTTATGACAGTCTGCTGTATTACGATCATGCCGGTTTTCCTGCGGATGTTTACTTCATCCGAAGCGGTCATTGAACTTGGCGTCCGCTATTCTG(...TRUNCATED)
| [["100066","100705","100991","101872","102386","104758","105602","106404","10820","109288","109527",(...TRUNCATED)
| [["100683","100959","101851","102405","104761","105471","106147","108815","11710","109521","110435",(...TRUNCATED)
| [["Unknown","Unknown","Unknown","hcrC","xdhA","mobA","spoVT","mtgA","Unknown","acpP_1","Unknown","fa(...TRUNCATED)
| [["+","+","+","+","+","+","+","+","+","+","+","+","+","+","+","+","+","+","+","-","-","-","+","+","+(...TRUNCATED)
|
97.5
| "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__A(...TRUNCATED)
|
ERS971760
|
ERP012929
|
Israel
|
Lachnospiraceae
|
Agathobacter
|
Agathobacter rectalis
|
MGYG000048124
| ["MGYG000048124_1","MGYG000048124_2","MGYG000048124_3","MGYG000048124_4","MGYG000048124_5","MGYG0000(...TRUNCATED)
| "GTAAGAATAAGCCCCGGAGAAGTCAAGAAGCCAGTGTGCAGAAGGAGGAAAAGTGAAAACTACACGCGAAAATATAAAAAACAGAATAGAAGAAATTAA(...TRUNCATED)
| [["10926","11872","1383","13955","15654","16029","16264","16895","17265","17986","1926","19683","198(...TRUNCATED)
| [["11711","13638","1889","15304","15914","16253","16515","17176","17993","19272","2483","19835","204(...TRUNCATED)
| [["Unknown","argS","Unknown","rcsC_1","Unknown","Unknown","Unknown","Unknown","natR_1","Unknown","id(...TRUNCATED)
| [["+","+","+","+","+","+","+","-","+","+","+","+","+","+","+","+","-","+","+","-","+","+","+","+","+(...TRUNCATED)
|
90.95
| "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor;s__(...TRUNCATED)
|
ERS396541
|
ERP004605
|
Spain
|
Lachnospiraceae
|
Acetatifactor
|
Acetatifactor sp900066565
|
MGYG000048146
| ["MGYG000048146_1","MGYG000048146_2","MGYG000048146_3","MGYG000048146_4","MGYG000048146_5","MGYG0000(...TRUNCATED)
| "AGTCTTCTGTTCTACACGGAAGTTTTCTACAGCATACTTGACATTACGTATCGGTGTATAAATAGAGTCGATTGGAATTACATTAACATCCGTGCAATA(...TRUNCATED)
| [["1315","1716","2130","2255","591"],["11213","12062","1234","1932","2443","3506","4323","4837","535(...TRUNCATED)
| [["1704","2096","2246","2473","1196"],["12007","12598","1881","2414","3492","4255","4751","5292","63(...TRUNCATED)
| [["rpsK","rpsM","rpmJ","infA","rpsD"],["Unknown","mgsA_1","Unknown","ftnA_2","fbaB_2","gpmA_2","Unkn(...TRUNCATED)
| [["-","-","-","-","-"],["+","+","+","+","+","+","+","+","+","+","+","+","+"],["-","+"],["-","-","-",(...TRUNCATED)
|
61.46
| "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bac(...TRUNCATED)
|
SRS015854
|
SRP002163
|
United States
|
Bacteroidaceae
|
Bacteroides
|
Bacteroides ovatus
|
MGYG000048403
| ["MGYG000048403_1","MGYG000048403_2","MGYG000048403_3","MGYG000048403_4","MGYG000048403_5","MGYG0000(...TRUNCATED)
| "TCGGCGTCGATCACCGCATTCGGCTTCTGCGAGGTGGCCGCAGAATCCAGGTACACGAGCGGGTGCCCGTGAATCTCCTGATCCAGAATCGGGAACTGC(...TRUNCATED)
| [["1069","11496","12747","13388","14580","15047","17856","18092","18693","19540","21595","22420","23(...TRUNCATED)
| [["2304","12683","13220","14569","15038","17728","18092","18490","19367","21504","22221","23388","38(...TRUNCATED)
| [["Unknown","aroC","Unknown","Unknown","yrrK","alaS","Unknown","Unknown","gpmA_1","oatA_1","rpsD","b(...TRUNCATED)
| [["-","-","+","-","-","-","-","-","-","+","-","-","-","-","-","-","-","+","+","-","-","-","+","-","+(...TRUNCATED)
|
88.85
| "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifido(...TRUNCATED)
|
ERS1491725
|
ERP020739
|
United Kingdom
|
Bifidobacteriaceae
|
Bifidobacterium
|
Bifidobacterium infantis
|
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