idx int64 0 41.2k | question stringlengths 74 4.04k | target stringlengths 7 750 |
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17,100 | public static GridCoverage2D mergeCoverages ( GridCoverage2D valuesMap , GridCoverage2D onMap ) { RegionMap valuesRegionMap = getRegionParamsFromGridCoverage ( valuesMap ) ; int cs = valuesRegionMap . getCols ( ) ; int rs = valuesRegionMap . getRows ( ) ; RegionMap onRegionMap = getRegionParamsFromGridCoverage ( onMap ... | Coverage merger . |
17,101 | public static double [ ] [ ] calculateHypsographic ( GridCoverage2D elevationCoverage , int bins , IHMProgressMonitor pm ) { if ( pm == null ) { pm = new DummyProgressMonitor ( ) ; } RegionMap regionMap = getRegionParamsFromGridCoverage ( elevationCoverage ) ; int cols = regionMap . getCols ( ) ; int rows = regionMap .... | Calculates the hypsographic curve for the given raster using the supplied bins . |
17,102 | static public void zipFolder ( String srcFolder , String destZipFile , boolean addBaseFolder ) throws IOException { if ( new File ( srcFolder ) . isDirectory ( ) ) { try ( FileOutputStream fileWriter = new FileOutputStream ( destZipFile ) ; ZipOutputStream zip = new ZipOutputStream ( fileWriter ) ) { addFolderToZip ( "... | Compress a folder and its contents . |
17,103 | public static String unzipFolder ( String zipFile , String destFolder , boolean addTimeStamp ) throws IOException { String newFirstName = null ; try ( ZipFile zf = new ZipFile ( zipFile ) ) { Enumeration < ? extends ZipEntry > zipEnum = zf . entries ( ) ; String firstName = null ; while ( zipEnum . hasMoreElements ( ) ... | Uncompress a compressed file to the contained structure . |
17,104 | public void setWorkingDirectory ( File dir ) { if ( ! dir . exists ( ) ) { throw new IllegalArgumentException ( dir + " doesn't exist." ) ; } pb . directory ( dir ) ; } | Set the working directory where the process get executed . |
17,105 | public int exec ( ) throws IOException { int exitValue = 0 ; List < String > argl = new ArrayList < String > ( ) ; argl . add ( executable . toString ( ) ) ; for ( Object a : args ) { if ( a != null ) { if ( a . getClass ( ) == String . class ) { argl . add ( a . toString ( ) ) ; } else if ( a . getClass ( ) == String ... | Process execution . This call blocks until the process is done . |
17,106 | private void addResult ( ValidationResult result ) { if ( result == null || result . count ( ) == 0 ) { return ; } this . results . add ( result ) ; } | Adds a validationResult to the results - if there are any messages |
17,107 | public List < ValidationMessage < Origin > > getMessages ( String messageKey , Severity severity ) { List < ValidationMessage < Origin > > messages = new ArrayList < ValidationMessage < Origin > > ( ) ; for ( ValidationResult result : results ) { for ( ValidationMessage < Origin > message : result . getMessages ( ) ) {... | Finds validation messages by the message key and severity . |
17,108 | public static byte [ ] serialize ( Object obj ) throws IOException { try ( ByteArrayOutputStream bos = new ByteArrayOutputStream ( ) ) { ObjectOutputStream out = new ObjectOutputStream ( bos ) ; out . writeObject ( obj ) ; out . close ( ) ; return bos . toByteArray ( ) ; } } | Serialize an Object to disk . |
17,109 | public static < T > T deSerialize ( byte [ ] bytes , Class < T > adaptee ) throws Exception { ObjectInputStream in = new ObjectInputStream ( new ByteArrayInputStream ( bytes ) ) ; Object readObject = in . readObject ( ) ; return adaptee . cast ( readObject ) ; } | Deserialize a byte array to a given object . |
17,110 | public static void serializeToDisk ( File file , Object obj ) throws IOException { byte [ ] serializedObj = serialize ( obj ) ; try ( RandomAccessFile raFile = new RandomAccessFile ( file , "rw" ) ) { raFile . write ( serializedObj ) ; } } | Serialize an object to disk . |
17,111 | public static < T > T deSerializeFromDisk ( File file , Class < T > adaptee ) throws Exception { try ( RandomAccessFile raf = new RandomAccessFile ( file , "r" ) ) { long length = raf . length ( ) ; byte [ ] bytes = new byte [ ( int ) length ] ; int read = raf . read ( bytes ) ; if ( read != length ) { throw new IOExce... | Deserialize a file to a given object . |
17,112 | private void checkParametersAndRunEnergyBalance ( double [ ] rain , double [ ] [ ] T , double [ ] [ ] V , double [ ] [ ] P , double [ ] [ ] RH , double month , double day , double hour , double [ ] Abasin , double [ ] [ ] [ ] A , double [ ] [ ] [ ] EI , double [ ] [ ] DTd , double [ ] [ ] DTm , double [ ] [ ] canopy ) ... | Method to check the input parameters . |
17,113 | public static BufferedReader getBufferedXMLReader ( InputStream stream , int xmlLookahead ) throws IOException { BufferedInputStream input = new BufferedInputStream ( stream ) ; input . mark ( xmlLookahead ) ; EncodingInfo encoding = new EncodingInfo ( ) ; XmlCharsetDetector . getCharsetAwareReader ( input , encoding )... | Wraps an xml input xstream in a buffered reader specifying a lookahead that can be used to preparse some of the xml document resetting it back to its original state for actual parsing . |
17,114 | public static BufferedReader getBufferedXMLReader ( Reader reader , int xmlLookahead ) throws IOException { if ( ! ( reader instanceof BufferedReader ) ) { reader = new BufferedReader ( reader ) ; } reader . mark ( xmlLookahead ) ; return ( BufferedReader ) reader ; } | Wraps an xml reader in a buffered reader specifying a lookahead that can be used to preparse some of the xml document resetting it back to its original state for actual parsing . |
17,115 | private void validateCoefficients ( ) { if ( coefsValid ) return ; if ( n >= 2 ) { double xBar = ( double ) sumX / n ; double yBar = ( double ) sumY / n ; a1 = ( double ) ( ( n * sumXY - sumX * sumY ) / ( n * sumXX - sumX * sumX ) ) ; a0 = ( double ) ( yBar - a1 * xBar ) ; } else { a0 = a1 = Double . NaN ; } coefsValid... | Validate the coefficients . |
17,116 | public static synchronized void initializeDXF_SCHEMA ( CoordinateReferenceSystem crs ) { if ( DXF_POINTSCHEMA != null && DXF_POINTSCHEMA . getAttributeCount ( ) != 0 ) return ; SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder ( ) ; b . setName ( "dxfpointfile" ) ; b . setCRS ( crs ) ; b . add ( "the_geom" , Po... | Initialize a JUMP FeatureSchema to load dxf data keeping some graphic attributes . |
17,117 | private byte [ ] readClassData ( JavaFileObject classFile ) throws IOException { ByteArrayOutputStream bos = new ByteArrayOutputStream ( ) ; byte [ ] buf = new byte [ 4096 ] ; InputStream classStream = classFile . openInputStream ( ) ; int n = classStream . read ( buf ) ; while ( n > 0 ) { bos . write ( buf , 0 , n ) ;... | Reads all class file data into a byte array from the given file object . |
17,118 | public static String [ ] getAllMarksArray ( ) { Set < String > keySet = markNamesToDef . keySet ( ) ; return ( String [ ] ) keySet . toArray ( new String [ keySet . size ( ) ] ) ; } | Getter for an array of all available marks . |
17,119 | public static void substituteMark ( Rule rule , String wellKnownMarkName ) { PointSymbolizer pointSymbolizer = StyleUtilities . pointSymbolizerFromRule ( rule ) ; Mark oldMark = SLD . mark ( pointSymbolizer ) ; Graphic graphic = SLD . graphic ( pointSymbolizer ) ; graphic . graphicalSymbols ( ) . clear ( ) ; Mark mark ... | Change the mark shape in a rule . |
17,120 | public static void substituteExternalGraphics ( Rule rule , URL externalGraphicsUrl ) { String urlString = externalGraphicsUrl . toString ( ) ; String format = "" ; if ( urlString . toLowerCase ( ) . endsWith ( ".png" ) ) { format = "image/png" ; } else if ( urlString . toLowerCase ( ) . endsWith ( ".jpg" ) ) { format ... | Change the external graphic in a rule . |
17,121 | public static void changeMarkSize ( Rule rule , int newSize ) { PointSymbolizer pointSymbolizer = StyleUtilities . pointSymbolizerFromRule ( rule ) ; Graphic graphic = SLD . graphic ( pointSymbolizer ) ; graphic . setSize ( ff . literal ( newSize ) ) ; } | Changes the size of a mark inside a rule . |
17,122 | public static void changeRotation ( Rule rule , int newRotation ) { PointSymbolizer pointSymbolizer = StyleUtilities . pointSymbolizerFromRule ( rule ) ; Graphic graphic = SLD . graphic ( pointSymbolizer ) ; graphic . setRotation ( ff . literal ( newRotation ) ) ; } | Changes the rotation value inside a rule . |
17,123 | @ SuppressWarnings ( { "rawtypes" , "unchecked" } ) public static void setOffset ( Symbolizer symbolizer , String text ) { if ( text . indexOf ( ',' ) == - 1 ) { return ; } String [ ] split = text . split ( "," ) ; if ( split . length != 2 ) { return ; } double xOffset = Double . parseDouble ( split [ 0 ] ) ; double yO... | Sets the offset in a symbolizer . |
17,124 | public static String styleToString ( Style style ) throws Exception { StyledLayerDescriptor sld = sf . createStyledLayerDescriptor ( ) ; UserLayer layer = sf . createUserLayer ( ) ; layer . setLayerFeatureConstraints ( new FeatureTypeConstraint [ ] { null } ) ; sld . addStyledLayer ( layer ) ; layer . addUserStyle ( st... | Converts a style to its string representation to be written to file . |
17,125 | public static StyleWrapper createStyleFromGraphic ( File graphicsPath ) throws IOException { String name = graphicsPath . getName ( ) ; ExternalGraphic exGraphic = null ; if ( name . toLowerCase ( ) . endsWith ( ".png" ) ) { exGraphic = sf . createExternalGraphic ( graphicsPath . toURI ( ) . toURL ( ) , "image/png" ) ;... | Generates a style based on a graphic . |
17,126 | public static float [ ] getDash ( String dashStr ) { if ( dashStr == null ) { return null ; } String [ ] dashSplit = dashStr . split ( "," ) ; int size = dashSplit . length ; float [ ] dash = new float [ size ] ; try { for ( int i = 0 ; i < dash . length ; i ++ ) { dash [ i ] = Float . parseFloat ( dashSplit [ i ] . tr... | Returns a dash array from a dash string . |
17,127 | public static String getDashString ( float [ ] dashArray ) { StringBuilder sb = null ; for ( float f : dashArray ) { if ( sb == null ) { sb = new StringBuilder ( String . valueOf ( f ) ) ; } else { sb . append ( "," ) ; sb . append ( String . valueOf ( f ) ) ; } } return sb . toString ( ) ; } | Converts teh array to string . |
17,128 | public static int sld2awtJoin ( String sldJoin ) { if ( sldJoin . equals ( lineJoinNames [ 1 ] ) ) { return BasicStroke . JOIN_BEVEL ; } else if ( sldJoin . equals ( "" ) || sldJoin . equals ( lineJoinNames [ 2 ] ) ) { return BasicStroke . JOIN_MITER ; } else if ( sldJoin . equals ( lineJoinNames [ 3 ] ) ) { return Bas... | Convert a sld line join definition to the java awt value . |
17,129 | public static int sld2awtCap ( String sldCap ) { if ( sldCap . equals ( "" ) || sldCap . equals ( lineCapNames [ 1 ] ) ) { return BasicStroke . CAP_BUTT ; } else if ( sldCap . equals ( lineCapNames [ 2 ] ) ) { return BasicStroke . CAP_ROUND ; } else if ( sldCap . equals ( lineCapNames [ 3 ] ) ) { return BasicStroke . C... | Convert a sld line cap definition to the java awt value . |
17,130 | public static Envelope scaleToWidth ( Envelope original , double newWidth ) { double width = original . getWidth ( ) ; double factor = newWidth / width ; double newHeight = original . getHeight ( ) * factor ; return new Envelope ( original . getMinX ( ) , original . getMinX ( ) + newWidth , original . getMinY ( ) , ori... | Scale an envelope to have a given width . |
17,131 | public static int getDayOfYear ( Calendar cal , int type ) { int jday = cal . get ( Calendar . DAY_OF_YEAR ) ; int mo = cal . get ( java . util . Calendar . MONTH ) + 1 ; if ( type == CALENDAR_YEAR ) { return jday ; } else if ( type == SOLAR_YEAR ) { int day = cal . get ( Calendar . DAY_OF_MONTH ) ; return ( mo == 12 &... | Get the Day of the year in WATER SOLAR or CALENDAR year . |
17,132 | public static double deltaHours ( int calUnit , int increments ) { if ( calUnit == Calendar . DATE ) { return 24 * increments ; } else if ( calUnit == Calendar . HOUR ) { return increments ; } else if ( calUnit == Calendar . MINUTE ) { return increments / 60 ; } else if ( calUnit == Calendar . SECOND ) { return increme... | This used to be deltim in MMS . |
17,133 | protected ValidationMessage < Origin > reportError ( Origin origin , String messageKey , Object ... params ) { return reportMessage ( Severity . ERROR , origin , messageKey , params ) ; } | Creates an error validation message for the feature and adds it to the validation result . |
17,134 | protected ValidationMessage < Origin > reportFeatureError ( Origin origin , String messageKey , Feature feature , Object ... params ) { ValidationMessage < Origin > message = reportMessage ( Severity . ERROR , origin , messageKey , params ) ; appendLocusTadAndGeneIDToMessage ( feature , message ) ; return message ; } | Creates an error validation message for the feature and adds it to the validation result . If there are locus_tag or gene qualifiers the values of these will be added to the message as a curator comment . |
17,135 | public static void appendLocusTadAndGeneIDToMessage ( Feature feature , ValidationMessage < Origin > message ) { if ( SequenceEntryUtils . isQualifierAvailable ( Qualifier . LOCUS_TAG_QUALIFIER_NAME , feature ) ) { Qualifier locusTag = SequenceEntryUtils . getQualifier ( Qualifier . LOCUS_TAG_QUALIFIER_NAME , feature )... | If a feature had locus_tag or gene qualifiers - appends the value of these to the message as a curator comment . Useful for some submitters who want more of a handle on the origin than just a line number . |
17,136 | protected ValidationMessage < Origin > reportWarning ( Origin origin , String messageKey , Object ... params ) { return reportMessage ( Severity . WARNING , origin , messageKey , params ) ; } | Creates a warning validation message for the feature and adds it to the validation result . |
17,137 | protected ValidationMessage < Origin > reportMessage ( Severity severity , Origin origin , String messageKey , Object ... params ) { ValidationMessage < Origin > message = EntryValidations . createMessage ( origin , severity , messageKey , params ) ; message . getMessage ( ) ; result . append ( message ) ; return messa... | Creates a validation message for the feature and adds it to the validation result . |
17,138 | private boolean isAlone ( Geometry geometryN ) { Coordinate [ ] coordinates = geometryN . getCoordinates ( ) ; if ( coordinates . length > 1 ) { Coordinate first = coordinates [ 0 ] ; Coordinate last = coordinates [ coordinates . length - 1 ] ; for ( SimpleFeature line : linesList ) { Geometry lineGeom = ( Geometry ) l... | Checks if the given geometry is connected to any other line . |
17,139 | public static void defaultSmoothShapefile ( String shapePath , String outPath ) throws Exception { PrintStreamProgressMonitor pm = new PrintStreamProgressMonitor ( System . out , System . err ) ; SimpleFeatureCollection initialFC = OmsShapefileFeatureReader . readShapefile ( shapePath ) ; OmsLineSmootherMcMaster smooth... | An utility method to use the module with default values and shapefiles . |
17,140 | public double magnitudeSqr ( Object pt ) { double sum = 0.0 ; double [ ] coords = coords ( pt ) ; for ( int i = 0 ; i < dimensions ; i ++ ) { double c = coords [ i ] ; sum += c * c ; } return sum ; } | space point operations |
17,141 | public static byte [ ] generateSecretKey ( ) { final byte [ ] k = new byte [ KEY_LEN ] ; final SecureRandom random = new SecureRandom ( ) ; random . nextBytes ( k ) ; return k ; } | Generates a 32 - byte secret key . |
17,142 | private static void initialize ( ) { for ( int i = 0 ; i < 256 ; ++ i ) { long crc = i ; for ( int j = 8 ; j > 0 ; j -- ) { if ( ( crc & 1 ) == 1 ) crc = ( crc >>> 1 ) ^ polynomial ; else crc >>>= 1 ; } values [ i ] = crc ; } init_done = true ; } | Calculates a CRC value for a byte to be used by CRC calculation functions . |
17,143 | public static long calculateCRC32 ( byte [ ] buffer , int offset , int length ) { if ( ! init_done ) { initialize ( ) ; } for ( int i = offset ; i < offset + length ; i ++ ) { long tmp1 = ( crc >>> 8 ) & 0x00FFFFFFL ; long tmp2 = values [ ( int ) ( ( crc ^ Character . toUpperCase ( ( char ) buffer [ i ] ) ) & 0xff ) ] ... | Calculates the CRC - 32 of a block of data all at once |
17,144 | private synchronized URLClassLoader getClassLoader ( ) { if ( modelClassLoader == null ) { List < File > jars = res . filterFiles ( "jar" ) ; List < File > cli_jars = getExtraResources ( ) ; List < File > dirs = res . filterDirectories ( ) ; List < URL > urls = new ArrayList < URL > ( ) ; try { for ( int i = 0 ; i < ja... | get the URL class loader for all the resources ( just for jar files |
17,145 | public static double getDistanceBetween ( IHMConnection connection , Coordinate p1 , Coordinate p2 , int srid ) throws Exception { if ( srid < 0 ) { srid = 4326 ; } GeometryFactory gf = new GeometryFactory ( ) ; LineString lineString = gf . createLineString ( new Coordinate [ ] { p1 , p2 } ) ; String sql = "select Geod... | Calculates the GeodesicLength between to points . |
17,146 | private boolean moveToNextTriggerpoint ( RandomIter triggerIter , RandomIter flowIter , int [ ] flowDirColRow ) { double tmpFlowValue = flowIter . getSampleDouble ( flowDirColRow [ 0 ] , flowDirColRow [ 1 ] , 0 ) ; if ( tmpFlowValue == 10 ) { return false ; } if ( ! ModelsEngine . go_downstream ( flowDirColRow , tmpFlo... | Moves the flowDirColRow variable to the next trigger point . |
17,147 | public static void memclr ( byte [ ] array , int offset , int length ) { for ( int i = 0 ; i < length ; ++ i , ++ offset ) array [ offset ] = 0 ; } | Fill the given array with zeros . |
17,148 | public static byte [ ] zero_pad ( byte [ ] original , int block_size ) { if ( ( original . length % block_size ) == 0 ) { return original ; } byte [ ] result = new byte [ round_up ( original . length , block_size ) ] ; memcpy ( result , 0 , original , 0 , original . length ) ; return result ; } | Return a new array equal to original except zero - padded to an integral mulitple of blocks . If the original is already an integral multiple of blocks just return it . |
17,149 | public static boolean isSupportedVectorExtension ( String name ) { for ( String ext : supportedVectors ) { if ( name . toLowerCase ( ) . endsWith ( ext ) ) { return true ; } } return false ; } | Checks a given name of a file if it is a supported vector extension . |
17,150 | public static boolean isSupportedRasterExtension ( String name ) { for ( String ext : supportedRasters ) { if ( name . toLowerCase ( ) . endsWith ( ext ) ) { return true ; } } return false ; } | Checks a given name of a file if it is a supported raster extension . |
17,151 | public static GridCoverage2D readRaster ( String path ) throws Exception { OmsRasterReader reader = new OmsRasterReader ( ) ; reader . file = path ; reader . process ( ) ; GridCoverage2D geodata = reader . outRaster ; return geodata ; } | Utility method to quickly read a grid in default mode . |
17,152 | private void swap ( int i , int j ) { double [ ] temp = data [ i ] ; data [ i ] = data [ j ] ; data [ j ] = temp ; } | swap rows i and j |
17,153 | public Matrix transpose ( ) { Matrix A = new Matrix ( N , M ) ; for ( int i = 0 ; i < M ; i ++ ) { for ( int j = 0 ; j < N ; j ++ ) { A . data [ j ] [ i ] = data [ i ] [ j ] ; } } return A ; } | create and return the transpose of the invoking matrix |
17,154 | public Matrix solve ( Matrix rhs ) { if ( M != N || rhs . M != N || rhs . N != 1 ) { throw new RuntimeException ( "Illegal matrix dimensions." ) ; } Matrix A = new Matrix ( this ) ; Matrix b = new Matrix ( rhs ) ; for ( int i = 0 ; i < N ; i ++ ) { int max = i ; for ( int j = i + 1 ; j < N ; j ++ ) { if ( Math . abs ( ... | return x = A^ - 1 b assuming A is square and has full rank |
17,155 | public void print ( ) { for ( int i = 0 ; i < M ; i ++ ) { for ( int j = 0 ; j < N ; j ++ ) { System . out . printf ( "%9.4f " , data [ i ] [ j ] ) ; } System . out . println ( ) ; } } | print matrix to standard output |
17,156 | public void createTables ( boolean makeIndexes ) throws Exception { database . executeInsertUpdateDeleteSql ( "DROP TABLE IF EXISTS " + TABLE_TILES ) ; database . executeInsertUpdateDeleteSql ( "DROP TABLE IF EXISTS " + TABLE_METADATA ) ; database . executeInsertUpdateDeleteSql ( CREATE_TILES ) ; database . executeInse... | Create the mbtiles tables in the db . |
17,157 | public void fillMetadata ( float n , float s , float w , float e , String name , String format , int minZoom , int maxZoom ) throws Exception { String query = toMetadataQuery ( "name" , name ) ; database . executeInsertUpdateDeleteSql ( query ) ; query = toMetadataQuery ( "description" , name ) ; database . executeInse... | Populate the metadata table . |
17,158 | public synchronized void addTile ( int x , int y , int z , byte [ ] imageBytes ) throws Exception { database . execOnConnection ( connection -> { try ( IHMPreparedStatement pstmt = connection . prepareStatement ( insertTileSql ) ; ) { pstmt . setInt ( 1 , z ) ; pstmt . setInt ( 2 , x ) ; pstmt . setInt ( 3 , y ) ; pstm... | Add a single tile . |
17,159 | public synchronized void addTilesInBatch ( List < Tile > tilesList ) throws Exception { database . execOnConnection ( connection -> { boolean autoCommit = connection . getAutoCommit ( ) ; connection . setAutoCommit ( false ) ; try ( IHMPreparedStatement pstmt = connection . prepareStatement ( insertTileSql ) ; ) { for ... | Add a list of tiles in batch mode . |
17,160 | public byte [ ] getTile ( int tx , int tyOsm , int zoom ) throws Exception { int ty = tyOsm ; if ( tileRowType . equals ( "tms" ) ) { int [ ] tmsTileXY = MercatorUtils . osmTile2TmsTile ( tx , tyOsm , zoom ) ; ty = tmsTileXY [ 1 ] ; } int _ty = ty ; return database . execOnConnection ( connection -> { try ( IHMPrepared... | Get a Tile s image bytes from the database . |
17,161 | public Envelope getBounds ( ) throws Exception { checkMetadata ( ) ; String boundsWSEN = metadataMap . get ( "bounds" ) ; String [ ] split = boundsWSEN . split ( "," ) ; double w = Double . parseDouble ( split [ 0 ] ) ; double s = Double . parseDouble ( split [ 1 ] ) ; double e = Double . parseDouble ( split [ 2 ] ) ; ... | Get the db envelope . |
17,162 | public int [ ] getBoundsInTileIndex ( int zoomlevel ) throws Exception { String sql = "select min(tile_column), max(tile_column), min(tile_row), max(tile_row) from tiles where zoom_level=" + zoomlevel ; return database . execOnConnection ( connection -> { try ( IHMStatement statement = connection . createStatement ( ) ... | Get the bounds of a zoomlevel in tile indexes . |
17,163 | public void out2in ( Object from , String from_out , Object ... tos ) { for ( Object co : tos ) { out2in ( from , from_out , co , from_out ) ; } } | Connects field1 of cmd1 with the same named fields in cmds |
17,164 | public void in2in ( String in , Object to , String to_in ) { controller . mapIn ( in , to , to_in ) ; } | Maps a Compound Input field to a internal simple input field . |
17,165 | public void in2in ( String in , Object ... to ) { for ( Object cmd : to ) { in2in ( in , cmd , in ) ; } } | Maps a compound input to an internal simple input field . Both fields have the same name . |
17,166 | public void field2in ( Object o , String field , Object to , String to_in ) { controller . mapInField ( o , field , to , to_in ) ; } | Maps a object s field to an In field |
17,167 | public void field2in ( Object o , String field , Object to ) { field = field . trim ( ) ; if ( field . indexOf ( ' ' ) > 0 ) { String [ ] fields = field . split ( "\\s+" ) ; for ( String f : fields ) { field2in ( o , f , to , f ) ; } } else { field2in ( o , field , to , field ) ; } } | Maps an object s field to a component s In field with the same name |
17,168 | public void out2field ( Object from , String from_out , Object o , String field ) { controller . mapOutField ( from , from_out , o , field ) ; } | Maps a component s Out field to an object field . |
17,169 | public void out2field ( Object from , String from_out , Object o ) { out2field ( from , from_out , o , from_out ) ; } | Maps a component Out field to an object s field . Both field have the same name . |
17,170 | public void out2out ( String out , Object to , String to_out ) { controller . mapOut ( out , to , to_out ) ; } | Maps a Compound Output field to a internal simple output field . |
17,171 | public void connect ( Object from , String from_out , Object to , String to_in ) { controller . connect ( from , from_out , to , to_in ) ; } | deprecated methods starting here . |
17,172 | protected void reportError ( ValidationResult result , String messageKey , Object ... params ) { reportMessage ( result , Severity . ERROR , messageKey , params ) ; } | Creates an error validation message for the sequence and adds it to the validation result . |
17,173 | protected void reportWarning ( ValidationResult result , String messageKey , Object ... params ) { reportMessage ( result , Severity . WARNING , messageKey , params ) ; } | Creates a warning validation message for the sequence and adds it to the validation result . |
17,174 | protected void reportMessage ( ValidationResult result , Severity severity , String messageKey , Object ... params ) { result . append ( EntryValidations . createMessage ( origin , severity , messageKey , params ) ) ; } | Creates a validation message for the sequence and adds it to the validation result . |
17,175 | private void calcInsolation ( double lambda , WritableRaster demWR , WritableRaster gradientWR , WritableRaster insolationWR , int day , double dx ) { double dayangb = ( 360 / 365.25 ) * ( day - 79.436 ) ; dayangb = Math . toRadians ( dayangb ) ; delta = getDeclination ( dayangb ) ; double ss = Math . acos ( - Math . t... | Evaluate the radiation . |
17,176 | public static boolean isCrsValid ( CoordinateReferenceSystem crs ) { if ( crs instanceof AbstractSingleCRS ) { AbstractSingleCRS aCrs = ( AbstractSingleCRS ) crs ; Datum datum = aCrs . getDatum ( ) ; ReferenceIdentifier name = datum . getName ( ) ; String code = name . getCode ( ) ; if ( code . equalsIgnoreCase ( "Unkn... | Checks if a crs is valid i . e . if it is not a wildcard default one . |
17,177 | @ SuppressWarnings ( "nls" ) public static void writeProjectionFile ( String filePath , String extention , CoordinateReferenceSystem crs ) throws IOException { String prjPath = null ; if ( extention != null && filePath . toLowerCase ( ) . endsWith ( "." + extention ) ) { int dotLoc = filePath . lastIndexOf ( "." ) ; pr... | Fill the prj file with the actual map projection . |
17,178 | public static void reproject ( CoordinateReferenceSystem from , CoordinateReferenceSystem to , Object [ ] geometries ) throws Exception { MathTransform mathTransform = CRS . findMathTransform ( from , to ) ; for ( int i = 0 ; i < geometries . length ; i ++ ) { geometries [ i ] = JTS . transform ( ( Geometry ) geometrie... | Reproject a set of geometries |
17,179 | public static void reproject ( CoordinateReferenceSystem from , CoordinateReferenceSystem to , Coordinate [ ] coordinates ) throws Exception { MathTransform mathTransform = CRS . findMathTransform ( from , to ) ; for ( int i = 0 ; i < coordinates . length ; i ++ ) { coordinates [ i ] = JTS . transform ( coordinates [ i... | Reproject a set of coordinates . |
17,180 | public static double getMetersAsWGS84 ( double meters , Coordinate c ) { GeodeticCalculator gc = new GeodeticCalculator ( DefaultGeographicCRS . WGS84 ) ; gc . setStartingGeographicPoint ( c . x , c . y ) ; gc . setDirection ( 90 , meters ) ; Point2D destinationGeographicPoint = gc . getDestinationGeographicPoint ( ) ;... | Converts meters to degrees based on a given coordinate in 90 degrees direction . |
17,181 | private void createHoughPixels ( double [ ] [ ] [ ] houghValues , byte houghPixels [ ] ) { double d = - 1D ; for ( int j = 0 ; j < height ; j ++ ) { for ( int k = 0 ; k < width ; k ++ ) { if ( houghValues [ k ] [ j ] [ 0 ] > d ) { d = houghValues [ k ] [ j ] [ 0 ] ; } } } for ( int l = 0 ; l < height ; l ++ ) { for ( i... | Convert Values in Hough Space to an 8 - Bit Image Space . |
17,182 | public void drawCircles ( double [ ] [ ] [ ] houghValues , byte [ ] circlespixels ) { int roiaddr = 0 ; for ( int y = offy ; y < offy + height ; y ++ ) { for ( int x = offx ; x < offx + width ; x ++ ) { circlespixels [ roiaddr ] = imageValues [ x + offset * y ] ; if ( circlespixels [ roiaddr ] != 0 ) circlespixels [ ro... | Draw the circles found in the original image . |
17,183 | public String getSequence ( Long beginPosition , Long endPosition ) { byte [ ] sequenceByte = getSequenceByte ( beginPosition , endPosition ) ; if ( sequenceByte != null ) return new String ( sequenceByte ) ; return null ; } | Returns a subsequence string or null if the location is not valid . |
17,184 | private void set ( Matrix m ) { this . nRows = this . nCols = Math . min ( m . nRows , m . nCols ) ; this . values = m . values ; } | Set this square matrix from another matrix . Note that this matrix will reference the values of the argument matrix . If the values are not square only the upper left square is used . |
17,185 | protected void set ( double values [ ] [ ] ) { super . set ( values ) ; nRows = nCols = Math . min ( nRows , nCols ) ; } | Set this square matrix from a 2 - d array of values . If the values are not square only the upper left square is used . |
17,186 | public static void printMatrixData ( double [ ] [ ] matrix ) { int cols = matrix [ 0 ] . length ; int rows = matrix . length ; for ( int r = 0 ; r < rows ; r ++ ) { for ( int c = 0 ; c < cols ; c ++ ) { printer . print ( matrix [ r ] [ c ] ) ; printer . print ( separator ) ; } printer . println ( ) ; } } | Print data from a matrix . |
17,187 | public static String envelope2WKT ( org . locationtech . jts . geom . Envelope env ) { GeometryFactory gf = GeometryUtilities . gf ( ) ; Geometry geometry = gf . toGeometry ( env ) ; return geometry . toText ( ) ; } | Print the envelope as WKT . |
17,188 | public int read ( ) throws IOException { int b = 0 ; if ( fOffset < fLength ) { return fData [ fOffset ++ ] & 0xff ; } if ( fOffset == fEndOffset ) { return - 1 ; } if ( fOffset == fData . length ) { byte [ ] newData = new byte [ fOffset << 1 ] ; System . arraycopy ( fData , 0 , newData , 0 , fOffset ) ; fData = newDat... | Reads next byte from this stream . This byte is either being read from underlying InputStream or taken from the internal buffer in case it was already read at some point before . |
17,189 | public void close ( ) throws IOException { if ( fInputStream != null ) { fInputStream . close ( ) ; fInputStream = null ; fData = null ; } } | Closes underlying byte stream . |
17,190 | public String getTranslation ( ) { if ( codons == null ) { return "" ; } StringBuilder translation = new StringBuilder ( ) ; for ( Codon codon : codons ) { translation . append ( codon . getAminoAcid ( ) ) ; } return translation . toString ( ) ; } | Returns the translation including stop codons and trailing bases . |
17,191 | public String getConceptualTranslation ( ) { if ( codons == null ) { return "" ; } StringBuilder translation = new StringBuilder ( ) ; for ( int i = 0 ; i < conceptualTranslationCodons ; ++ i ) { Codon codon = codons . get ( i ) ; translation . append ( codon . getAminoAcid ( ) ) ; } return translation . toString ( ) ;... | Returns the translation excluding stop codons and trailing bases . |
17,192 | public static double [ ] gaussianSmooth ( double [ ] values , int kernelRadius ) throws Exception { int size = values . length ; double [ ] newValues = new double [ values . length ] ; double [ ] kernelData2D = makeGaussianKernel ( kernelRadius ) ; for ( int i = 0 ; i < kernelRadius ; i ++ ) { newValues [ i ] = values ... | Smooth an array of values with a gaussian blur . |
17,193 | public static double [ ] averageSmooth ( double [ ] values , int lookAhead ) throws Exception { int size = values . length ; double [ ] newValues = new double [ values . length ] ; for ( int i = 0 ; i < lookAhead ; i ++ ) { newValues [ i ] = values [ i ] ; } for ( int i = lookAhead ; i < size - lookAhead ; i ++ ) { dou... | Smooth an array of values with an averaging moving window . |
17,194 | public Coordinate wgs84ToEnu ( Coordinate cLL ) { checkZ ( cLL ) ; Coordinate cEcef = wgs84ToEcef ( cLL ) ; Coordinate enu = ecefToEnu ( cEcef ) ; return enu ; } | Converts the wgs84 coordinate to ENU . |
17,195 | public Coordinate enuToWgs84 ( Coordinate enu ) { checkZ ( enu ) ; Coordinate cEcef = enuToEcef ( enu ) ; Coordinate wgs84 = ecefToWgs84 ( cEcef ) ; return wgs84 ; } | Converts the ENU coordinate to wgs84 . |
17,196 | public void convertGeometryFromEnuToWgs84 ( Geometry geometryEnu ) { Coordinate [ ] coordinates = geometryEnu . getCoordinates ( ) ; for ( int i = 0 ; i < coordinates . length ; i ++ ) { Coordinate wgs84 = enuToWgs84 ( coordinates [ i ] ) ; coordinates [ i ] . x = wgs84 . x ; coordinates [ i ] . y = wgs84 . y ; coordin... | Converts a geometry from ENU to WGS . |
17,197 | public void convertGeometryFromWgsToEnu ( Geometry geometryWgs ) { Coordinate [ ] coordinates = geometryWgs . getCoordinates ( ) ; for ( int i = 0 ; i < coordinates . length ; i ++ ) { Coordinate enu = wgs84ToEnu ( coordinates [ i ] ) ; coordinates [ i ] . x = enu . x ; coordinates [ i ] . y = enu . y ; coordinates [ i... | Converts a geometry from WGS to ENU . |
17,198 | public Envelope convertEnvelopeFromWgsToEnu ( Envelope envelopeWgs ) { Polygon polygonEnu = GeometryUtilities . createPolygonFromEnvelope ( envelopeWgs ) ; convertGeometryFromWgsToEnu ( polygonEnu ) ; Envelope envelopeEnu = polygonEnu . getEnvelopeInternal ( ) ; return envelopeEnu ; } | Converts an envelope from WGS to ENU . |
17,199 | public synchronized Position goTo ( Double lon , Double lat , Double elev , Double azimuth , boolean animate ) { View view = getWwd ( ) . getView ( ) ; view . stopAnimations ( ) ; view . stopMovement ( ) ; Position eyePosition ; if ( lon == null || lat == null ) { Position currentEyePosition = wwd . getView ( ) . getCu... | Move to a given location . |
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