idx
int64
0
252k
question
stringlengths
48
5.28k
target
stringlengths
5
1.23k
5,700
def _useChunk ( self , index ) -> None : if self . currentChunk is not None : if self . currentChunkIndex == index and not self . currentChunk . closed : return self . currentChunk . close ( ) self . currentChunk = self . _openChunk ( index ) self . currentChunkIndex = index self . itemNum = self . currentChunk . numKe...
Switch to specific chunk
5,701
def numKeys ( self ) -> int : chunks = self . _listChunks ( ) num_chunks = len ( chunks ) if num_chunks == 0 : return 0 count = ( num_chunks - 1 ) * self . chunkSize last_chunk = self . _openChunk ( chunks [ - 1 ] ) count += sum ( 1 for _ in last_chunk . _lines ( ) ) last_chunk . close ( ) return count
This will iterate only over the last chunk since the name of the last chunk indicates how many lines in total exist in all other chunks
5,702
def register ( self , subscriber ) : assert isinstance ( subscriber , RequestHandler ) logger . debug ( 'New subscriber' ) self . subscribers . add ( subscriber )
Register a new subscriber . This method should be invoked by listeners to start receiving messages .
5,703
def deregister ( self , subscriber ) : try : logger . debug ( 'Subscriber left' ) self . subscribers . remove ( subscriber ) except KeyError : logger . debug ( 'Error removing subscriber: ' + str ( subscriber ) )
Stop publishing to a subscriber .
5,704
def shutdown ( self ) : self . _done . set ( ) self . executor . shutdown ( wait = False )
Stop the publishing loop .
5,705
def add_alignment ( self , ref_seq , annotation ) -> Annotation : seq_features = get_seqs ( ref_seq ) annoated_align = { } allele = ref_seq . description . split ( "," ) [ 0 ] locus = allele . split ( "*" ) [ 0 ] . split ( "-" ) [ 1 ] for feat in seq_features : if feat in annotation . annotation : if isinstance ( annot...
add_alignment - method for adding the alignment to an annotation
5,706
def object2xml ( self , data ) : r if not self . __options [ 'encoding' ] : self . set_options ( encoding = self . __encoding ) if self . __options [ 'header_declare' ] : self . __tree . append ( self . build_xml_header ( ) ) root = self . __options [ 'root' ] if not root : assert ( isinstance ( data , utils . DictType...
r Convert python object to xml string .
5,707
def build_tree ( self , data , tagname , attrs = None , depth = 0 ) : r if data is None : data = '' indent = ( '\n%s' % ( self . __options [ 'indent' ] * depth ) ) if self . __options [ 'indent' ] else '' if isinstance ( data , utils . DictTypes ) : if self . __options [ 'hasattr' ] and self . check_structure ( data . ...
r Build xml tree .
5,708
def check_structure ( self , keys ) : r return set ( keys ) <= set ( [ self . __options [ 'attrkey' ] , self . __options [ 'valuekey' ] ] )
r Check structure availability by attrkey and valuekey option .
5,709
def pickdata ( self , data ) : r attrs = data . get ( self . __options [ 'attrkey' ] ) or { } values = data . get ( self . __options [ 'valuekey' ] ) or '' return ( attrs , values )
r Pick data from attrkey and valuekey option .
5,710
def safedata ( self , data , cdata = True ) : r safe = ( '<![CDATA[%s]]>' % data ) if cdata else cgi . escape ( str ( data ) , True ) return safe
r Convert xml special chars to entities .
5,711
def build_tag ( self , tag , text = '' , attrs = None ) : r return '%s%s%s' % ( self . tag_start ( tag , attrs ) , text , self . tag_end ( tag ) )
r Build tag full info include the attributes .
5,712
def build_attr ( self , attrs ) : r attrs = sorted ( attrs . iteritems ( ) , key = lambda x : x [ 0 ] ) return ' ' . join ( map ( lambda x : '%s="%s"' % x , attrs ) )
r Build tag attributes .
5,713
def tag_start ( self , tag , attrs = None ) : r return '<%s %s>' % ( tag , self . build_attr ( attrs ) ) if attrs else '<%s>' % tag
r Build started tag info .
5,714
def open_file_dialog ( self ) : dialog = QtWidgets . QFileDialog sender = self . sender ( ) if sender == self . btn_open_source : textbox = self . source_path elif sender == self . btn_open_target : textbox = self . target_path folder = dialog . getExistingDirectory ( self , 'Select a file:' , textbox . text ( ) , opti...
Opens a file dialog to get the path to a file and put tha tpath in the correct textbox
5,715
def class_type_changed ( self ) : if self . source_path . text ( ) : self . reset_avaliable ( self . source_path . text ( ) )
Forces a reset if the class type is changed from instruments to scripts or vice versa
5,716
def select_inputs ( self , address : str , amount : int ) -> dict : utxos = [ ] utxo_sum = Decimal ( 0 ) for tx in sorted ( self . listunspent ( address = address ) , key = itemgetter ( 'confirmations' ) ) : if tx [ "address" ] not in ( self . pa_parameters . P2TH_addr , self . pa_parameters . test_P2TH_addr ) : utxos ...
finds apropriate utxo s to include in rawtx while being careful to never spend old transactions with a lot of coin age . Argument is intiger returns list of apropriate UTXO s
5,717
def listunspent ( self , address : str = "" , minconf : int = 1 , maxconf : int = 999999 , ) -> list : if address : return self . req ( "listunspent" , [ minconf , maxconf , [ address ] ] ) return self . req ( "listunspent" , [ minconf , maxconf ] )
list UTXOs modified version to allow filtering by address .
5,718
def rem2ics ( ) : from argparse import ArgumentParser , FileType from dateutil . parser import parse from sys import stdin , stdout parser = ArgumentParser ( description = 'Converter from Remind to iCalendar syntax.' ) parser . add_argument ( '-s' , '--startdate' , type = lambda s : parse ( s ) . date ( ) , default = d...
Command line tool to convert from Remind to iCalendar
5,719
def ics2rem ( ) : from argparse import ArgumentParser , FileType from sys import stdin , stdout parser = ArgumentParser ( description = 'Converter from iCalendar to Remind syntax.' ) parser . add_argument ( '-l' , '--label' , help = 'Label for every Remind entry' ) parser . add_argument ( '-p' , '--priority' , type = i...
Command line tool to convert from iCalendar to Remind
5,720
def _parse_remind ( self , filename , lines = '' ) : files = { } reminders = { } if lines : filename = '-' files [ filename ] = lines reminders [ filename ] = { } cmd = [ 'remind' , '-l' , '-s%d' % self . _month , '-b1' , '-y' , '-r' , filename , str ( self . _startdate ) ] try : rem = Popen ( cmd , stdin = PIPE , stdo...
Calls remind and parses the output into a dict
5,721
def _parse_remind_line ( self , line , text ) : event = { } line = line . split ( None , 6 ) dat = [ int ( f ) for f in line [ 0 ] . split ( '/' ) ] if line [ 4 ] != '*' : start = divmod ( int ( line [ 4 ] ) , 60 ) event [ 'dtstart' ] = [ datetime ( dat [ 0 ] , dat [ 1 ] , dat [ 2 ] , start [ 0 ] , start [ 1 ] , tzinfo...
Parse a line of remind output into a dict
5,722
def _interval ( dates ) : interval = ( dates [ 1 ] - dates [ 0 ] ) . days last = dates [ 0 ] for dat in dates [ 1 : ] : if ( dat - last ) . days != interval : return 0 last = dat return interval
Return the distance between all dates and 0 if they are different
5,723
def _gen_dtend_rrule ( dtstarts , vevent ) : interval = Remind . _interval ( dtstarts ) if interval > 0 and interval % 7 == 0 : rset = rrule . rruleset ( ) rset . rrule ( rrule . rrule ( freq = rrule . WEEKLY , interval = interval // 7 , count = len ( dtstarts ) ) ) vevent . rruleset = rset elif interval > 1 : rset = r...
Generate an rdate or rrule from a list of dates and add it to the vevent
5,724
def _gen_vevent ( self , event , vevent ) : vevent . add ( 'dtstart' ) . value = event [ 'dtstart' ] [ 0 ] vevent . add ( 'dtstamp' ) . value = datetime . fromtimestamp ( self . _mtime ) vevent . add ( 'summary' ) . value = event [ 'msg' ] vevent . add ( 'uid' ) . value = event [ 'uid' ] if 'class' in event : vevent . ...
Generate vevent from given event
5,725
def _update ( self ) : update = not self . _reminders with self . _lock : for fname in self . _reminders : if getmtime ( fname ) > self . _mtime : update = True break if update : self . _reminders = self . _parse_remind ( self . _filename )
Reload Remind files if the mtime is newer
5,726
def get_uids ( self , filename = None ) : self . _update ( ) if filename : if filename not in self . _reminders : return [ ] return self . _reminders [ filename ] . keys ( ) return [ uid for uids in self . _reminders . values ( ) for uid in uids ]
UIDs of all reminders in the file excluding included files If a filename is specified only it s UIDs are return otherwise all .
5,727
def to_vobjects ( self , filename , uids = None ) : self . _update ( ) if not uids : uids = self . _reminders [ filename ] items = [ ] for uid in uids : cal = iCalendar ( ) self . _gen_vevent ( self . _reminders [ filename ] [ uid ] , cal . add ( 'vevent' ) ) etag = md5 ( ) etag . update ( self . _reminders [ filename ...
Return iCal objects and etags of all Remind entries in uids
5,728
def to_vobject ( self , filename = None , uid = None ) : self . _update ( ) cal = iCalendar ( ) if uid : self . _gen_vevent ( self . _reminders [ filename ] [ uid ] , cal . add ( 'vevent' ) ) elif filename : for event in self . _reminders [ filename ] . values ( ) : self . _gen_vevent ( event , cal . add ( 'vevent' ) )...
Return iCal object of Remind lines If filename and UID are specified the vObject only contains that event . If only a filename is specified the vObject contains all events in the file . Otherwise the vObject contains all all objects of all files associated with the Remind object .
5,729
def stdin_to_vobject ( self , lines ) : cal = iCalendar ( ) for event in self . _parse_remind ( '-' , lines ) [ '-' ] . values ( ) : self . _gen_vevent ( event , cal . add ( 'vevent' ) ) return cal
Return iCal object of the Remind commands in lines
5,730
def _parse_rruleset ( rruleset ) : if rruleset . _rrule [ 0 ] . _freq == 0 : return [ ] rep = [ ] if rruleset . _rrule [ 0 ] . _byweekday and len ( rruleset . _rrule [ 0 ] . _byweekday ) > 1 : rep . append ( '*1' ) elif rruleset . _rrule [ 0 ] . _freq == rrule . DAILY : rep . append ( '*%d' % rruleset . _rrule [ 0 ] . ...
Convert from iCal rrule to Remind recurrence syntax
5,731
def _event_duration ( vevent ) : if hasattr ( vevent , 'dtend' ) : return vevent . dtend . value - vevent . dtstart . value elif hasattr ( vevent , 'duration' ) and vevent . duration . value : return vevent . duration . value return timedelta ( 0 )
unify dtend and duration to the duration of the given vevent
5,732
def to_remind ( self , vevent , label = None , priority = None , tags = None , tail = None , sep = " " , postdate = None , posttime = None ) : remind = [ 'REM' ] trigdates = None if hasattr ( vevent , 'rrule' ) : trigdates = Remind . _parse_rruleset ( vevent . rruleset ) dtstart = vevent . dtstart . value if isinstance...
Generate a Remind command from the given vevent
5,733
def to_reminders ( self , ical , label = None , priority = None , tags = None , tail = None , sep = " " , postdate = None , posttime = None ) : if not hasattr ( ical , 'vevent_list' ) : return '' reminders = [ self . to_remind ( vevent , label , priority , tags , tail , sep , postdate , posttime ) for vevent in ical . ...
Return Remind commands for all events of a iCalendar
5,734
def append_vobject ( self , ical , filename = None ) : if not filename : filename = self . _filename elif filename not in self . _reminders : return with self . _lock : outdat = self . to_reminders ( ical ) open ( filename , 'a' ) . write ( outdat ) return Remind . _get_uid ( outdat )
Append a Remind command generated from the iCalendar to the file
5,735
def remove ( self , uid , filename = None ) : if not filename : filename = self . _filename elif filename not in self . _reminders : return uid = uid . split ( '@' ) [ 0 ] with self . _lock : rem = open ( filename ) . readlines ( ) for ( index , line ) in enumerate ( rem ) : if uid == md5 ( line [ : - 1 ] . encode ( 'u...
Remove the Remind command with the uid from the file
5,736
def move_vobject ( self , uid , from_file , to_file ) : if from_file not in self . _reminders or to_file not in self . _reminders : return uid = uid . split ( '@' ) [ 0 ] with self . _lock : rem = open ( from_file ) . readlines ( ) for ( index , line ) in enumerate ( rem ) : if uid == md5 ( line [ : - 1 ] . encode ( 'u...
Move the Remind command with the uid from from_file to to_file
5,737
def expand_include ( filename ) : open_files = set ( ) def _expand_include_rec ( filename ) : if filename in open_files : raise RuntimeError ( 'Recursive include statement detected for ' 'file: ' + filename ) else : open_files . add ( filename ) with open ( filename ) as open_file : for line in open_file : line_strippe...
Expand the content of a file into a string .
5,738
def to_json ( self ) : self . logger . debug ( "Returning json info" ) individual_info = { 'family_id' : self . family , 'id' : self . individual_id , 'sex' : str ( self . sex ) , 'phenotype' : str ( self . phenotype ) , 'mother' : self . mother , 'father' : self . father , 'extra_info' : self . extra_info } return ind...
Return the individual info in a dictionary for json .
5,739
def to_madeline ( self ) : self . logger . debug ( "Returning madeline info" ) if self . sex == 1 : madeline_gender = 'M' elif self . sex == 2 : madeline_gender = 'F' else : madeline_gender = '.' if self . father == '0' : madeline_father = '.' else : madeline_father = self . father if self . mother == '0' : madeline_mo...
Return the individual info in a madeline formated string
5,740
def module_name_from_path ( folder_name , verbose = False ) : folder_name = folder_name . split ( '.pyc' ) [ 0 ] folder_name = folder_name . split ( '.py' ) [ 0 ] folder_name = os . path . normpath ( folder_name ) path = folder_name + '/' package = get_python_package ( path ) module = [ ] if verbose : print ( ( 'folder...
takes in a path to a folder or file and return the module path and the path to the module
5,741
def explore_package ( module_name ) : packages = [ ] loader = pkgutil . get_loader ( module_name ) for sub_module in pkgutil . walk_packages ( [ os . path . dirname ( loader . get_filename ( ) ) ] , prefix = module_name + '.' ) : _ , sub_module_name , _ = sub_module packages . append ( sub_module_name ) return packages
returns all the packages in the module
5,742
def generate_from_directory ( cls , directory ) : files = [ os . path . join ( directory , f ) for f in os . listdir ( directory ) if os . path . isfile ( os . path . join ( directory , f ) ) ] return cls ( files )
Create a parser by defining which input files it will read from .
5,743
def get_density ( self ) : strc = self . get_output_structure ( ) density = sum ( strc . get_masses ( ) ) / strc . get_volume ( ) * 1.660539040 return Property ( scalars = [ Scalar ( value = density ) ] , units = "g/(cm^3)" )
Compute the density from the output structure
5,744
def get_number_of_atoms ( self ) : strc = self . get_output_structure ( ) if not strc : return None return Property ( scalars = [ Scalar ( value = len ( strc ) ) ] , units = "/unit cell" )
Get the number of atoms in the calculated structure .
5,745
def load_b26_file ( file_name ) : assert os . path . exists ( file_name ) with open ( file_name , 'r' ) as infile : data = yaml . safe_load ( infile ) return data
loads a . b26 file into a dictionary
5,746
def recv_message ( self , debug = False ) : if debug : packet = self . sock . recv ( 1024 ) hexdump ( packet ) packet_length_data = self . sock . recv ( 4 ) if len ( packet_length_data ) < 4 : raise Exception ( "Nothing in the socket!" ) packet_length = struct . unpack ( "<I" , packet_length_data ) [ 0 ] packet = self ...
Reading socket and receiving message from server . Check the CRC32 .
5,747
def get_category_lists ( self , init_kwargs = None , additional_parents_aliases = None ) : if self . _category_editor is not None : return self . _category_editor . get_lists ( ) from . toolbox import get_category_lists init_kwargs = init_kwargs or { } catlist_kwargs = { } if self . _category_lists_init_kwargs is not N...
Returns a list of CategoryList objects associated with this model instance .
5,748
def enable_category_lists_editor ( self , request , editor_init_kwargs = None , additional_parents_aliases = None , lists_init_kwargs = None , handler_init_kwargs = None ) : from . toolbox import CategoryRequestHandler additional_parents_aliases = additional_parents_aliases or [ ] lists_init_kwargs = lists_init_kwargs ...
Enables editor functionality for categories of this object .
5,749
def add_to_category ( self , category , user ) : init_kwargs = { 'category' : category , 'creator' : user , 'linked_object' : self } tie = self . categories . model ( ** init_kwargs ) tie . save ( ) return tie
Add this model instance to a category .
5,750
def remove_from_category ( self , category ) : ctype = ContentType . objects . get_for_model ( self ) self . categories . model . objects . filter ( category = category , content_type = ctype , object_id = self . id ) . delete ( )
Removes this object from a given category .
5,751
def get_ties_for_categories_qs ( cls , categories , user = None , status = None ) : if not isinstance ( categories , list ) : categories = [ categories ] category_ids = [ ] for category in categories : if isinstance ( category , models . Model ) : category_ids . append ( category . id ) else : category_ids . append ( c...
Returns a QuerySet of Ties for the given categories .
5,752
def get_from_category_qs ( cls , category ) : ids = cls . get_ties_for_categories_qs ( category ) . values_list ( 'object_id' ) . distinct ( ) filter_kwargs = { 'id__in' : [ i [ 0 ] for i in ids ] } return cls . objects . filter ( ** filter_kwargs )
Returns a QuerySet of objects of this type associated with the given category .
5,753
def main ( ) : parser = argparse . ArgumentParser ( ) parser . add_argument ( "-f" , "--file" , required = True , help = "input file" , type = str ) parser . add_argument ( "-l" , "--locus" , required = True , help = "Locus" , type = str ) parser . add_argument ( "-k" , "--kir" , help = "Option for running with KIR" , ...
This is run if file is directly executed but not if imported as module . Having this in a separate function allows importing the file into interactive python and still able to execute the function for testing
5,754
def _push_subtree ( self , leaves : List [ bytes ] ) : size = len ( leaves ) if count_bits_set ( size ) != 1 : raise ValueError ( "invalid subtree with size != 2^k: %s" % size ) subtree_h , mintree_h = lowest_bit_set ( size ) , self . __mintree_height if mintree_h > 0 and subtree_h > mintree_h : raise ValueError ( "sub...
Extend with a full subtree < = the current minimum subtree .
5,755
def resolve ( obj , pointer , registry = None ) : registry = LocalRegistry ( obj , registry or { } ) local = DocumentPointer ( pointer ) if local . document : registry [ local . document ] = obj local . document = '<local>' return registry . resolve ( local )
resolve a local object
5,756
def addUrlScheme ( self , url ) : if not isinstance ( url , str ) : raise TypeError ( 'url must be a string value' ) if not url in self . _urlSchemes : self . _urlSchemes [ url ] = OEmbedUrlScheme ( url )
Add a url scheme to this endpoint . It takes a url string and create the OEmbedUrlScheme object internally .
5,757
def match ( self , url ) : try : urlSchemes = self . _urlSchemes . itervalues ( ) except AttributeError : urlSchemes = self . _urlSchemes . values ( ) for urlScheme in urlSchemes : if urlScheme . match ( url ) : return True return False
Try to find if url matches against any of the schemes within this endpoint .
5,758
def request ( self , url , ** opt ) : params = opt params [ 'url' ] = url urlApi = self . _urlApi if 'format' in params and self . _implicitFormat : urlApi = self . _urlApi . replace ( '{format}' , params [ 'format' ] ) del params [ 'format' ] if '?' in urlApi : return "%s&%s" % ( urlApi , urllib . urlencode ( params )...
Format the input url and optional parameters and provides the final url where to get the given resource .
5,759
def get ( self , url , ** opt ) : return self . fetch ( self . request ( url , ** opt ) )
Convert the resource url to a complete url and then fetch the data from it .
5,760
def fetch ( self , url ) : opener = self . _urllib . build_opener ( ) opener . addheaders = self . _requestHeaders . items ( ) response = opener . open ( url ) headers = response . info ( ) raw = response . read ( ) raw = raw . decode ( 'utf8' ) if not 'Content-Type' in headers : raise OEmbedError ( 'Missing mime-type ...
Fetch url and create a response object according to the mime - type .
5,761
def embed ( self , url , format = 'json' , ** opt ) : if format not in [ 'json' , 'xml' ] : raise OEmbedInvalidRequest ( 'Format must be json or xml' ) opt [ 'format' ] = format return self . _request ( url , ** opt )
Get an OEmbedResponse from one of the providers configured in this consumer according to the resource url .
5,762
def connect ( portname , baudrate ) : global SERPORT try : SERPORT = serial . Serial ( portname , baudrate , timeout = 0.1 ) except : raise HerkulexError ( "could not open the serial port" )
Connect to the Herkulex bus
5,763
def checksum1 ( data , stringlength ) : value_buffer = 0 for count in range ( 0 , stringlength ) : value_buffer = value_buffer ^ data [ count ] return value_buffer & 0xFE
Calculate Checksum 1
5,764
def send_data ( data ) : datalength = len ( data ) csm1 = checksum1 ( data , datalength ) csm2 = checksum2 ( csm1 ) data . insert ( 0 , 0xFF ) data . insert ( 1 , 0xFF ) data . insert ( 5 , csm1 ) data . insert ( 6 , csm2 ) stringtosend = "" for i in range ( len ( data ) ) : byteformat = '%02X' % data [ i ] stringtosen...
Send data to herkulex
5,765
def clear_errors ( ) : data = [ ] data . append ( 0x0B ) data . append ( BROADCAST_ID ) data . append ( RAM_WRITE_REQ ) data . append ( STATUS_ERROR_RAM ) data . append ( BYTE2 ) data . append ( 0x00 ) data . append ( 0x00 ) send_data ( data )
Clears the errors register of all Herkulex servos
5,766
def scale ( input_value , input_min , input_max , out_min , out_max ) : input_span = input_max - input_min output_span = out_max - out_min valuescaled = float ( input_value - input_min ) / float ( input_span ) return out_min + ( valuescaled * output_span )
scale a value from one range to another
5,767
def scan_servos ( ) : servos = [ ] for servo_id in range ( 0x00 , 0xFE ) : model = get_model ( servo_id ) if model : servos += [ ( servo_id , model ) ] return servos
Scan for the herkulex servos connected
5,768
def get_model ( servoid ) : data = [ ] data . append ( 0x09 ) data . append ( servoid ) data . append ( EEP_READ_REQ ) data . append ( MODEL_NO1_EEP ) data . append ( BYTE1 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 12 ) return ord ( rxdata [ 9 ] ) & 0xFF except : raise HerkulexError ( "could not...
Get the servo model
5,769
def get_servo_status ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( STATUS_ERROR_RAM ) data . append ( BYTE1 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 12 ) return ord ( rxdata [ 9 ] ) & 0xFF except : raise HerkulexErro...
Get the error status of servo
5,770
def get_servo_status_detail ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( STATUS_DETAIL_RAM ) data . append ( BYTE1 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 12 ) return ord ( rxdata [ 9 ] ) & 0xFF except HerkulexErro...
Get the detailed error status of servo
5,771
def set_led ( self , colorcode ) : data = [ ] data . append ( 0x0A ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( LED_CONTROL_RAM ) data . append ( 0x01 ) data . append ( colorcode ) send_data ( data )
Set the LED Color of Herkulex
5,772
def brake_on ( self ) : data = [ ] data . append ( 0x0A ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( TORQUE_CONTROL_RAM ) data . append ( 0x01 ) data . append ( 0x40 ) send_data ( data )
Set the Brakes of Herkulex
5,773
def torque_off ( self ) : data = [ ] data . append ( 0x0A ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( TORQUE_CONTROL_RAM ) data . append ( 0x01 ) data . append ( 0x00 ) send_data ( data )
Set the torques of Herkulex to zero
5,774
def torque_on ( self ) : data = [ ] data . append ( 0x0A ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( TORQUE_CONTROL_RAM ) data . append ( 0x01 ) data . append ( 0x60 ) send_data ( data )
Enable the torques of Herkulex
5,775
def get_torque_state ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( TORQUE_CONTROL_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) return bool ( ord ( rxdata [ 9 ] ) ) except HerkulexError : ...
get the torque state of motor
5,776
def set_servo_position ( self , goalposition , goaltime , led ) : goalposition_msb = int ( goalposition ) >> 8 goalposition_lsb = int ( goalposition ) & 0xff data = [ ] data . append ( 0x0C ) data . append ( self . servoid ) data . append ( I_JOG_REQ ) data . append ( goalposition_lsb ) data . append ( goalposition_msb...
Set the position of Herkulex
5,777
def get_servo_position ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( CALIBRATED_POSITION_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) if ( self . servomodel == 0x06 ) or ( self . servomod...
Gets the current position of Herkulex
5,778
def get_servo_temperature ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( TEMPERATURE_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) return ord ( rxdata [ 9 ] ) except HerkulexError : raise H...
Gets the current temperature of Herkulex
5,779
def get_servo_torque ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( PWM_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) if ord ( rxdata [ 10 ] ) <= 127 : return ( ( ord ( rxdata [ 10 ] ) & 0x...
Gets the current torque of Herkulex
5,780
def set_servo_speed ( self , goalspeed , led ) : if goalspeed > 0 : goalspeed_msb = ( int ( goalspeed ) & 0xFF00 ) >> 8 goalspeed_lsb = int ( goalspeed ) & 0xff elif goalspeed < 0 : goalspeed_msb = 64 + ( 255 - ( ( int ( goalspeed ) & 0xFF00 ) >> 8 ) ) goalspeed_lsb = ( abs ( goalspeed ) & 0xff ) data = [ ] data . appe...
Set the Herkulex in continuous rotation mode
5,781
def set_position_p ( self , pvalue ) : pvalue_msb = int ( pvalue ) >> 8 pvalue_lsb = int ( pvalue ) & 0xff data = [ ] data . append ( 0x0B ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( POSITION_KP_RAM ) data . append ( BYTE2 ) data . append ( pvalue_lsb ) data . append ( pvalue_msb ...
Set the P gain of the position PID
5,782
def set_position_i ( self , ivalue ) : ivalue_msb = int ( ivalue ) >> 8 ivalue_lsb = int ( ivalue ) & 0xff data = [ ] data . append ( 0x0B ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( POSITION_KI_RAM ) data . append ( BYTE2 ) data . append ( ivalue_lsb ) data . append ( ivalue_msb ...
Set the I gain of the position PID
5,783
def set_position_d ( self , dvalue ) : dvalue_msb = int ( dvalue ) >> 8 dvalue_lsb = int ( dvalue ) & 0xff data = [ ] data . append ( 0x0B ) data . append ( self . servoid ) data . append ( RAM_WRITE_REQ ) data . append ( POSITION_KD_RAM ) data . append ( BYTE2 ) data . append ( dvalue_lsb ) data . append ( dvalue_msb ...
Set the D gain of the PID
5,784
def get_position_p ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( POSITION_KP_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) return ( ord ( rxdata [ 10 ] ) * 256 ) + ( ord ( rxdata [ 9 ] ) &...
Get the P value of the current PID for position
5,785
def get_position_i ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( POSITION_KI_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) return ( ord ( rxdata [ 10 ] ) * 256 ) + ( ord ( rxdata [ 9 ] ) &...
Get the I value of the current PID for position
5,786
def get_position_d ( self ) : data = [ ] data . append ( 0x09 ) data . append ( self . servoid ) data . append ( RAM_READ_REQ ) data . append ( POSITION_KD_RAM ) data . append ( BYTE2 ) send_data ( data ) rxdata = [ ] try : rxdata = SERPORT . read ( 13 ) return ( ord ( rxdata [ 10 ] ) * 256 ) + ( ord ( rxdata [ 9 ] ) &...
Get the D value of the current PID for position
5,787
def save_pid_eeprom ( self ) : pval = self . get_position_p ( ) ival = self . get_position_i ( ) dval = self . get_position_d ( ) pvalue_msb = int ( pval ) >> 8 pvalue_lsb = int ( pval ) & 0xff data_p = [ ] data_p . append ( 0x0B ) data_p . append ( self . servoid ) data_p . append ( EEP_WRITE_REQ ) data_p . append ( P...
saves the PID values from RAM to EEPROM
5,788
def get_servo_angle ( self ) : servoposition = self . get_servo_position ( ) if ( self . servomodel == 0x06 ) or ( self . servomodel == 0x04 ) : return scale ( servoposition , 10627 , 22129 , - 159.9 , 159.6 ) else : return scale ( servoposition , 21 , 1002 , - 150 , 150 )
Gets the current angle of the servo in degrees
5,789
def disable_logging ( func ) : return func handler = logging . NullHandler ( ) @ wraps ( func ) def wrapper ( * args , ** kwargs ) : logger = logging . getLogger ( ) logger . addHandler ( handler ) resp = func ( * args , ** kwargs ) logger . removeHandler ( handler ) return resp return wrapper
Temporary disable logging .
5,790
def format_output ( func ) : return func @ wraps ( func ) def wrapper ( * args , ** kwargs ) : try : response = func ( * args , ** kwargs ) except Exception as error : print ( colored ( error , 'red' ) , file = sys . stderr ) sys . exit ( 1 ) else : print ( response ) sys . exit ( 0 ) return wrapper
Format output .
5,791
def start ( self , * args , ** kwargs ) : self . _stop = False super ( ReadProbes , self ) . start ( * args , ** kwargs )
start the read_probe thread
5,792
def quit ( self , * args , ** kwargs ) : self . _stop = True super ( ReadProbes , self ) . quit ( * args , ** kwargs )
quit the read_probe thread
5,793
def _set_current_subscript ( self , active ) : current_subscript = self . sender ( ) if active : for subscript_name in list ( self . _current_subscript_stage [ 'subscript_exec_count' ] . keys ( ) ) : if subscript_name == current_subscript . name : self . _current_subscript_stage [ 'subscript_exec_count' ] [ subscript_n...
sets the current subscript and keeps a counter of how ofter a particular subscript has been executed this information is usefull when implementing a status update or plotting functions that depend on which subscript is being executed
5,794
def remaining_time ( self ) : elapsed_time = ( datetime . datetime . now ( ) - self . start_time ) . total_seconds ( ) if self . progress == 0 : self . progress = 1 estimated_total_time = 100. / self . progress * elapsed_time return datetime . timedelta ( seconds = max ( estimated_total_time - elapsed_time , 0 ) )
estimates the time remaining until script is finished
5,795
def stop ( self ) : for subscript in list ( self . scripts . values ( ) ) : subscript . stop ( ) print ( ( '--- stopping: ' , self . name ) ) self . _abort = True
stops itself and all the subscript
5,796
def get_script_module ( script_information , package = 'pylabcontrol' , verbose = False ) : module , _ , _ , _ , _ , _ , _ = Script . get_script_information ( script_information = script_information , package = package , verbose = verbose ) return module
wrapper to get the module for a script
5,797
def duplicate ( self ) : class_of_script = self . __class__ script_name = self . name script_instruments = self . instruments sub_scripts = self . scripts script_settings = self . settings log_function = self . log_function data_path = self . data_path class_creation_string = '' if script_instruments != { } : class_cre...
create an copy of the script
5,798
def plot_validate ( self , figure_list ) : axes_list = self . get_axes_layout_validate ( figure_list ) self . _plot_validate ( axes_list )
plots the data contained in self . data which should be a dictionary or a deque of dictionaries for the latter use the last entry
5,799
def uniqueof20 ( k , rep = 10000 ) : alphabet = 'ACDEFGHIKLMNPQRSTVWY' reps = [ len ( set ( random . choice ( alphabet ) for i in range ( k ) ) ) for j in range ( rep ) ] return sum ( reps ) / len ( reps )
Sample k times out of alphabet how many different?