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def pool_versions ( self , updater_id = None , updater_name = None , pool_id = None ) : params = { 'search[updater_id]' : updater_id , 'search[updater_name]' : updater_name , 'search[pool_id]' : pool_id } return self . _get ( 'pool_versions.json' , params )
Get list of pool versions .
18,001
def tag_aliases ( self , name_matches = None , antecedent_name = None , tag_id = None ) : params = { 'search[name_matches]' : name_matches , 'search[antecedent_name]' : antecedent_name , 'search[id]' : tag_id } return self . _get ( 'tag_aliases.json' , params )
Get tags aliases .
18,002
def tag_implications ( self , name_matches = None , antecedent_name = None , tag_id = None ) : params = { 'search[name_matches]' : name_matches , 'search[antecedent_name]' : antecedent_name , 'search[id]' : tag_id } return self . _get ( 'tag_implications.json' , params )
Get tags implications .
18,003
def tag_related ( self , query , category = None ) : params = { 'query' : query , 'category' : category } return self . _get ( 'related_tag.json' , params )
Get related tags .
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def wiki_list ( self , title = None , creator_id = None , body_matches = None , other_names_match = None , creator_name = None , hide_deleted = None , other_names_present = None , order = None ) : params = { 'search[title]' : title , 'search[creator_id]' : creator_id , 'search[body_matches]' : body_matches , 'search[ot...
Function to retrieves a list of every wiki page .
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def wiki_versions_list ( self , page_id , updater_id ) : params = { 'earch[updater_id]' : updater_id , 'search[wiki_page_id]' : page_id } return self . _get ( 'wiki_page_versions.json' , params )
Return a list of wiki page version .
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def forum_topic_list ( self , title_matches = None , title = None , category_id = None ) : params = { 'search[title_matches]' : title_matches , 'search[title]' : title , 'search[category_id]' : category_id } return self . _get ( 'forum_topics.json' , params )
Function to get forum topics .
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def forum_post_list ( self , creator_id = None , creator_name = None , topic_id = None , topic_title_matches = None , topic_category_id = None , body_matches = None ) : params = { 'search[creator_id]' : creator_id , 'search[creator_name]' : creator_name , 'search[topic_id]' : topic_id , 'search[topic_title_matches]' : ...
Return a list of forum posts .
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def site_name ( self , site_name ) : if site_name in SITE_LIST : self . __site_name = site_name self . __site_url = SITE_LIST [ site_name ] [ 'url' ] else : raise PybooruError ( "The 'site_name' is not valid, specify a valid 'site_name'." )
Function that sets and checks the site name and set url .
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def site_url ( self , url ) : regex = re . compile ( r'^(?:http|https)://' r'(?:(?:[A-Z0-9](?:[A-Z0-9-]{0,61}[A-Z0-9])?\.)+(?:[A-Z]{2,6}\.?| \ [A-Z0-9-]{2,}(?<!-)\.?)|' r'localhost|' r'\d{1,3}\.\d{1,3}\.\d{1,3}\.\d{1,3}|' r'\[?[A-F0-9]*:[A-F0-9:]+\]?)' r'(?::\d+)?' r'(?:/?|[/?]\S+)$' , re . IGNORECASE ) if r...
URL setter and validator for site_url property .
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def _request ( self , url , api_call , request_args , method = 'GET' ) : try : if method != 'GET' : self . client . headers . update ( { 'content-type' : None } ) response = self . client . request ( method , url , ** request_args ) self . last_call . update ( { 'API' : api_call , 'url' : response . url , 'status_code'...
Function to request and returning JSON data .
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def post_update ( self , post_id , tags = None , file_ = None , rating = None , source = None , is_rating_locked = None , is_note_locked = None , parent_id = None ) : params = { 'id' : post_id , 'post[tags]' : tags , 'post[rating]' : rating , 'post[source]' : source , 'post[is_rating_locked]' : is_rating_locked , 'post...
Update a specific post .
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def site_name ( self , site_name ) : _Pybooru . site_name . fset ( self , site_name ) if ( 'api_version' and 'hashed_string' ) in SITE_LIST [ site_name ] : self . api_version = SITE_LIST [ site_name ] [ 'api_version' ] self . hash_string = SITE_LIST [ site_name ] [ 'hashed_string' ]
Sets api_version and hash_string .
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def _build_url ( self , api_call ) : if self . api_version in ( '1.13.0' , '1.13.0+update.1' , '1.13.0+update.2' ) : if '/' not in api_call : return "{0}/{1}/index.json" . format ( self . site_url , api_call ) return "{0}/{1}.json" . format ( self . site_url , api_call )
Build request url .
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def _build_hash_string ( self ) : if self . site_name in SITE_LIST or self . hash_string : if self . username and self . password : try : hash_string = self . hash_string . format ( self . password ) except TypeError : raise PybooruError ( "Pybooru can't add 'password' " "to 'hash_string'" ) self . password_hash = hash...
Function for build password hash string .
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def _is_autonomous ( indep , exprs ) : if indep is None : return True for expr in exprs : try : in_there = indep in expr . free_symbols except : in_there = expr . has ( indep ) if in_there : return False return True
Whether the expressions for the dependent variables are autonomous .
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def symmetricsys ( dep_tr = None , indep_tr = None , SuperClass = TransformedSys , ** kwargs ) : if dep_tr is not None : if not callable ( dep_tr [ 0 ] ) or not callable ( dep_tr [ 1 ] ) : raise ValueError ( "Exceptected dep_tr to be a pair of callables" ) if indep_tr is not None : if not callable ( indep_tr [ 0 ] ) or...
A factory function for creating symmetrically transformed systems .
18,017
def from_other ( cls , ori , ** kwargs ) : for k in cls . _attrs_to_copy + ( 'params' , 'roots' , 'init_indep' , 'init_dep' ) : if k not in kwargs : val = getattr ( ori , k ) if val is not None : kwargs [ k ] = val if 'lower_bounds' not in kwargs and getattr ( ori , 'lower_bounds' ) is not None : kwargs [ 'lower_bounds...
Creates a new instance with an existing one as a template .
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def get_jac ( self ) : if self . _jac is True : if self . sparse is True : self . _jac , self . _colptrs , self . _rowvals = self . be . sparse_jacobian_csc ( self . exprs , self . dep ) elif self . band is not None : self . _jac = self . be . banded_jacobian ( self . exprs , self . dep , * self . band ) else : f = sel...
Derives the jacobian from self . exprs and self . dep .
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def get_jtimes ( self ) : if self . _jtimes is False : return False if self . _jtimes is True : r = self . be . Dummy ( 'r' ) v = tuple ( self . be . Dummy ( 'v_{0}' . format ( i ) ) for i in range ( self . ny ) ) f = self . be . Matrix ( 1 , self . ny , self . exprs ) f = f . subs ( [ ( x_i , x_i + r * v_i ) for x_i ,...
Derive the jacobian - vector product from self . exprs and self . dep
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def jacobian_singular ( self ) : cses , ( jac_in_cses , ) = self . be . cse ( self . get_jac ( ) ) if jac_in_cses . nullspace ( ) : return True else : return False
Returns True if Jacobian is singular else False .
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def get_dfdx ( self ) : if self . _dfdx is True : if self . indep is None : zero = 0 * self . be . Dummy ( ) ** 0 self . _dfdx = self . be . Matrix ( 1 , self . ny , [ zero ] * self . ny ) else : self . _dfdx = self . be . Matrix ( 1 , self . ny , [ expr . diff ( self . indep ) for expr in self . exprs ] ) elif self . ...
Calculates 2nd derivatives of self . exprs
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def get_f_ty_callback ( self ) : cb = self . _callback_factory ( self . exprs ) lb = self . lower_bounds ub = self . upper_bounds if lb is not None or ub is not None : def _bounds_wrapper ( t , y , p = ( ) , be = None ) : if lb is not None : if np . any ( y < lb - 10 * self . _current_integration_kwargs [ 'atol' ] ) : ...
Generates a callback for evaluating self . exprs .
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def get_j_ty_callback ( self ) : j_exprs = self . get_jac ( ) if j_exprs is False : return None cb = self . _callback_factory ( j_exprs ) if self . sparse : from scipy . sparse import csc_matrix def sparse_cb ( x , y , p = ( ) ) : data = cb ( x , y , p ) . flatten ( ) return csc_matrix ( ( data , self . _rowvals , self...
Generates a callback for evaluating the jacobian .
18,024
def get_dfdx_callback ( self ) : dfdx_exprs = self . get_dfdx ( ) if dfdx_exprs is False : return None return self . _callback_factory ( dfdx_exprs )
Generate a callback for evaluating derivative of self . exprs
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def get_jtimes_callback ( self ) : jtimes = self . get_jtimes ( ) if jtimes is False : return None v , jtimes_exprs = jtimes return _Callback ( self . indep , tuple ( self . dep ) + tuple ( v ) , self . params , jtimes_exprs , Lambdify = self . be . Lambdify )
Generate a callback fro evaluating the jacobian - vector product .
18,026
def from_linear_invariants ( cls , ori_sys , preferred = None , ** kwargs ) : _be = ori_sys . be A = _be . Matrix ( ori_sys . linear_invariants ) rA , pivots = A . rref ( ) if len ( pivots ) < A . shape [ 0 ] : raise NotImplementedError ( "Linear invariants contain linear dependencies." ) per_row_cols = [ ( ri , [ ci f...
Reformulates the ODE system in fewer variables .
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def chained_parameter_variation ( subject , durations , y0 , varied_params , default_params = None , integrate_kwargs = None , x0 = None , npoints = 1 , numpy = None ) : assert len ( durations ) > 0 , 'need at least 1 duration (preferably many)' assert npoints > 0 , 'need at least 1 point per duration' for k , v in var...
Integrate an ODE - system for a serie of durations with some parameters changed in - between
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def pre_process ( self , xout , y0 , params = ( ) ) : for pre_processor in self . pre_processors : xout , y0 , params = pre_processor ( xout , y0 , params ) return [ self . numpy . atleast_1d ( arr ) for arr in ( xout , y0 , params ) ]
Transforms input to internal values used internally .
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def post_process ( self , xout , yout , params ) : for post_processor in self . post_processors : xout , yout , params = post_processor ( xout , yout , params ) return xout , yout , params
Transforms internal values to output used internally .
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def adaptive ( self , y0 , x0 , xend , params = ( ) , ** kwargs ) : return self . integrate ( ( x0 , xend ) , y0 , params = params , ** kwargs )
Integrate with integrator chosen output .
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def predefined ( self , y0 , xout , params = ( ) , ** kwargs ) : xout , yout , info = self . integrate ( xout , y0 , params = params , force_predefined = True , ** kwargs ) return yout , info
Integrate with user chosen output .
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def integrate ( self , x , y0 , params = ( ) , atol = 1e-8 , rtol = 1e-8 , ** kwargs ) : arrs = self . to_arrays ( x , y0 , params ) _x , _y , _p = _arrs = self . pre_process ( * arrs ) ndims = [ a . ndim for a in _arrs ] if ndims == [ 1 , 1 , 1 ] : twodim = False elif ndims == [ 2 , 2 , 2 ] : twodim = True else : rais...
Integrate the system of ordinary differential equations .
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def plot_phase_plane ( self , indices = None , ** kwargs ) : return self . _plot ( plot_phase_plane , indices = indices , ** kwargs )
Plots a phase portrait from last integration .
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def user_can_edit_news ( user ) : newsitem_models = [ model . get_newsitem_model ( ) for model in NEWSINDEX_MODEL_CLASSES ] if user . is_active and user . is_superuser : return bool ( newsitem_models ) for NewsItem in newsitem_models : for perm in format_perms ( NewsItem , [ 'add' , 'change' , 'delete' ] ) : if user . ...
Check if the user has permission to edit any of the registered NewsItem types .
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def user_can_edit_newsitem ( user , NewsItem ) : for perm in format_perms ( NewsItem , [ 'add' , 'change' , 'delete' ] ) : if user . has_perm ( perm ) : return True return False
Check if the user has permission to edit a particular NewsItem type .
18,036
def get_date_or_404 ( year , month , day ) : try : return datetime . date ( int ( year ) , int ( month ) , int ( day ) ) except ValueError : raise Http404
Try to make a date from the given inputs raising Http404 on error
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def respond ( self , request , view , newsitems , extra_context = { } ) : context = self . get_context ( request , view = view ) context . update ( self . paginate_newsitems ( request , newsitems ) ) context . update ( extra_context ) template = self . get_template ( request , view = view ) return TemplateResponse ( re...
A helper that takes some news items and returns an HttpResponse
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def get_newsitem_model ( model_string ) : try : NewsItem = apps . get_model ( model_string ) assert issubclass ( NewsItem , AbstractNewsItem ) except ( ValueError , LookupError , AssertionError ) : raise ValueError ( 'Invalid news item model string' . format ( model_string ) ) return NewsItem
Get the NewsItem model from a model string . Raises ValueError if the model string is invalid or references a model that is not a NewsItem .
18,039
def from_quad_tree ( cls , quad_tree ) : assert bool ( re . match ( '^[0-3]*$' , quad_tree ) ) , 'QuadTree value can only consists of the digits 0, 1, 2 and 3.' zoom = len ( str ( quad_tree ) ) offset = int ( math . pow ( 2 , zoom ) ) - 1 google_x , google_y = [ reduce ( lambda result , bit : ( result << 1 ) | bit , bi...
Creates a tile from a Microsoft QuadTree
18,040
def from_google ( cls , google_x , google_y , zoom ) : max_tile = ( 2 ** zoom ) - 1 assert 0 <= google_x <= max_tile , 'Google X needs to be a value between 0 and (2^zoom) -1.' assert 0 <= google_y <= max_tile , 'Google Y needs to be a value between 0 and (2^zoom) -1.' return cls ( tms_x = google_x , tms_y = ( 2 ** zoo...
Creates a tile from Google format X Y and zoom
18,041
def for_point ( cls , point , zoom ) : latitude , longitude = point . latitude_longitude return cls . for_latitude_longitude ( latitude = latitude , longitude = longitude , zoom = zoom )
Creates a tile for given point
18,042
def quad_tree ( self ) : value = '' tms_x , tms_y = self . tms tms_y = ( 2 ** self . zoom - 1 ) - tms_y for i in range ( self . zoom , 0 , - 1 ) : digit = 0 mask = 1 << ( i - 1 ) if ( tms_x & mask ) != 0 : digit += 1 if ( tms_y & mask ) != 0 : digit += 2 value += str ( digit ) return value
Gets the tile in the Microsoft QuadTree format converted from TMS
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def google ( self ) : tms_x , tms_y = self . tms return tms_x , ( 2 ** self . zoom - 1 ) - tms_y
Gets the tile in the Google format converted from TMS
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def bounds ( self ) : google_x , google_y = self . google pixel_x_west , pixel_y_north = google_x * TILE_SIZE , google_y * TILE_SIZE pixel_x_east , pixel_y_south = ( google_x + 1 ) * TILE_SIZE , ( google_y + 1 ) * TILE_SIZE point_min = Point . from_pixel ( pixel_x = pixel_x_west , pixel_y = pixel_y_south , zoom = self ...
Gets the bounds of a tile represented as the most west and south point and the most east and north point
18,045
def read_ix ( ix , ** kwargs ) : if not isinstance ( ix , ixmp . TimeSeries ) : error = 'not recognized as valid ixmp class: {}' . format ( ix ) raise ValueError ( error ) df = ix . timeseries ( iamc = False , ** kwargs ) df [ 'model' ] = ix . model df [ 'scenario' ] = ix . scenario return df , 'year' , [ ]
Read timeseries data from an ixmp object
18,046
def requires_package ( pkg , msg , error_type = ImportError ) : def _requires_package ( func ) : def wrapper ( * args , ** kwargs ) : if pkg is None : raise error_type ( msg ) return func ( * args , ** kwargs ) return wrapper return _requires_package
Decorator when a function requires an optional dependency
18,047
def write_sheet ( writer , name , df , index = False ) : if index : df = df . reset_index ( ) df . to_excel ( writer , name , index = False ) worksheet = writer . sheets [ name ] for i , col in enumerate ( df . columns ) : if df . dtypes [ col ] . name . startswith ( ( 'float' , 'int' ) ) : width = len ( str ( col ) ) ...
Write a pandas DataFrame to an ExcelWriter auto - formatting column width depending on maxwidth of data and colum header
18,048
def read_pandas ( fname , * args , ** kwargs ) : if not os . path . exists ( fname ) : raise ValueError ( 'no data file `{}` found!' . format ( fname ) ) if fname . endswith ( 'csv' ) : df = pd . read_csv ( fname , * args , ** kwargs ) else : xl = pd . ExcelFile ( fname ) if len ( xl . sheet_names ) > 1 and 'sheet_name...
Read a file and return a pd . DataFrame
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def sort_data ( data , cols ) : return data . sort_values ( cols ) [ cols + [ 'value' ] ] . reset_index ( drop = True )
Sort data rows and order columns
18,050
def _escape_regexp ( s ) : return ( str ( s ) . replace ( '|' , '\\|' ) . replace ( '.' , '\.' ) . replace ( '*' , '.*' ) . replace ( '+' , '\+' ) . replace ( '(' , '\(' ) . replace ( ')' , '\)' ) . replace ( '$' , '\\$' ) )
escape characters with specific regexp use
18,051
def years_match ( data , years ) : years = [ years ] if isinstance ( years , int ) else years dt = datetime . datetime if isinstance ( years , dt ) or isinstance ( years [ 0 ] , dt ) : error_msg = "`year` can only be filtered with ints or lists of ints" raise TypeError ( error_msg ) return data . isin ( years )
matching of year columns for data filtering
18,052
def hour_match ( data , hours ) : hours = [ hours ] if isinstance ( hours , int ) else hours return data . isin ( hours )
matching of days in time columns for data filtering
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def datetime_match ( data , dts ) : dts = dts if islistable ( dts ) else [ dts ] if any ( [ not isinstance ( i , datetime . datetime ) for i in dts ] ) : error_msg = ( "`time` can only be filtered by datetimes" ) raise TypeError ( error_msg ) return data . isin ( dts )
matching of datetimes in time columns for data filtering
18,054
def to_int ( x , index = False ) : _x = x . index if index else x cols = list ( map ( int , _x ) ) error = _x [ cols != _x ] if not error . empty : raise ValueError ( 'invalid values `{}`' . format ( list ( error ) ) ) if index : x . index = cols return x else : return _x
Formatting series or timeseries columns to int and checking validity . If index = False the function works on the pd . Series x ; else the function casts the index of x to int and returns x with a new index .
18,055
def concat_with_pipe ( x , cols = None ) : cols = cols or x . index return '|' . join ( [ x [ i ] for i in cols if x [ i ] not in [ None , np . nan ] ] )
Concatenate a pd . Series separated by | drop None or np . nan
18,056
def _make_index ( df , cols = META_IDX ) : return pd . MultiIndex . from_tuples ( pd . unique ( list ( zip ( * [ df [ col ] for col in cols ] ) ) ) , names = tuple ( cols ) )
Create an index from the columns of a dataframe
18,057
def check_aggregate ( df , variable , components = None , exclude_on_fail = False , multiplier = 1 , ** kwargs ) : fdf = df . filter ( ** kwargs ) if len ( fdf . data ) > 0 : vdf = fdf . check_aggregate ( variable = variable , components = components , exclude_on_fail = exclude_on_fail , multiplier = multiplier ) df . ...
Check whether the timeseries values match the aggregation of sub - categories
18,058
def filter_by_meta ( data , df , join_meta = False , ** kwargs ) : if not set ( META_IDX ) . issubset ( data . index . names + list ( data . columns ) ) : raise ValueError ( 'missing required index dimensions or columns!' ) meta = pd . DataFrame ( df . meta [ list ( set ( kwargs ) - set ( META_IDX ) ) ] . copy ( ) ) ke...
Filter by and join meta columns from an IamDataFrame to a pd . DataFrame
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def compare ( left , right , left_label = 'left' , right_label = 'right' , drop_close = True , ** kwargs ) : ret = pd . concat ( { right_label : right . data . set_index ( right . _LONG_IDX ) , left_label : left . data . set_index ( left . _LONG_IDX ) } , axis = 1 ) ret . columns = ret . columns . droplevel ( 1 ) if dr...
Compare the data in two IamDataFrames and return a pd . DataFrame
18,060
def concat ( dfs ) : if isstr ( dfs ) or not hasattr ( dfs , '__iter__' ) : msg = 'Argument must be a non-string iterable (e.g., list or tuple)' raise TypeError ( msg ) _df = None for df in dfs : df = df if isinstance ( df , IamDataFrame ) else IamDataFrame ( df ) if _df is None : _df = copy . deepcopy ( df ) else : _d...
Concatenate a series of pyam . IamDataFrame - like objects together
18,061
def variables ( self , include_units = False ) : if include_units : return self . data [ [ 'variable' , 'unit' ] ] . drop_duplicates ( ) . reset_index ( drop = True ) . sort_values ( 'variable' ) else : return pd . Series ( self . data . variable . unique ( ) , name = 'variable' )
Get a list of variables
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def append ( self , other , ignore_meta_conflict = False , inplace = False , ** kwargs ) : if not isinstance ( other , IamDataFrame ) : other = IamDataFrame ( other , ** kwargs ) ignore_meta_conflict = True if self . time_col is not other . time_col : raise ValueError ( 'incompatible time format (years vs. datetime)!' ...
Append any castable object to this IamDataFrame . Columns in other . meta that are not in self . meta are always merged duplicate region - variable - unit - year rows raise a ValueError .
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def pivot_table ( self , index , columns , values = 'value' , aggfunc = 'count' , fill_value = None , style = None ) : index = [ index ] if isstr ( index ) else index columns = [ columns ] if isstr ( columns ) else columns df = self . data if isstr ( aggfunc ) : if aggfunc == 'count' : df = self . data . groupby ( inde...
Returns a pivot table
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def as_pandas ( self , with_metadata = False ) : if with_metadata : cols = self . _discover_meta_cols ( ** with_metadata ) if isinstance ( with_metadata , dict ) else self . meta . columns return ( self . data . set_index ( META_IDX ) . join ( self . meta [ cols ] ) . reset_index ( ) ) else : return self . data . copy ...
Return this as a pd . DataFrame
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def _new_meta_column ( self , name ) : if name is None : raise ValueError ( 'cannot add a meta column `{}`' . format ( name ) ) if name not in self . meta : self . meta [ name ] = np . nan
Add a column to meta if it doesn t exist set to value np . nan
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def convert_unit ( self , conversion_mapping , inplace = False ) : ret = copy . deepcopy ( self ) if not inplace else self for current_unit , ( new_unit , factor ) in conversion_mapping . items ( ) : factor = pd . to_numeric ( factor ) where = ret . data [ 'unit' ] == current_unit ret . data . loc [ where , 'value' ] *...
Converts units based on provided unit conversion factors
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def normalize ( self , inplace = False , ** kwargs ) : if len ( kwargs ) > 1 or self . time_col not in kwargs : raise ValueError ( 'Only time(year)-based normalization supported' ) ret = copy . deepcopy ( self ) if not inplace else self df = ret . data cols = self . time_col value = kwargs [ self . time_col ] x = df . ...
Normalize data to a given value . Currently only supports normalizing to a specific time .
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def aggregate ( self , variable , components = None , append = False ) : components = components or self . _variable_components ( variable ) if not len ( components ) : msg = 'cannot aggregate variable `{}` because it has no components' logger ( ) . info ( msg . format ( variable ) ) return rows = self . _apply_filters...
Compute the aggregate of timeseries components or sub - categories
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def check_aggregate ( self , variable , components = None , exclude_on_fail = False , multiplier = 1 , ** kwargs ) : df_components = self . aggregate ( variable , components ) if df_components is None : return rows = self . _apply_filters ( variable = variable ) df_variable , df_components = ( _aggregate ( self . data ...
Check whether a timeseries matches the aggregation of its components
18,070
def aggregate_region ( self , variable , region = 'World' , subregions = None , components = None , append = False ) : if subregions is None : rows = self . _apply_filters ( variable = variable ) subregions = set ( self . data [ rows ] . region ) - set ( [ region ] ) if not len ( subregions ) : msg = 'cannot aggregate ...
Compute the aggregate of timeseries over a number of regions including variable components only defined at the region level
18,071
def check_aggregate_region ( self , variable , region = 'World' , subregions = None , components = None , exclude_on_fail = False , ** kwargs ) : df_subregions = self . aggregate_region ( variable , region , subregions , components ) if df_subregions is None : return rows = self . _apply_filters ( region = region , var...
Check whether the region timeseries data match the aggregation of components
18,072
def check_internal_consistency ( self , ** kwargs ) : inconsistent_vars = { } for variable in self . variables ( ) : diff_agg = self . check_aggregate ( variable , ** kwargs ) if diff_agg is not None : inconsistent_vars [ variable + "-aggregate" ] = diff_agg diff_regional = self . check_aggregate_region ( variable , **...
Check whether the database is internally consistent
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def _apply_filters ( self , ** filters ) : regexp = filters . pop ( 'regexp' , False ) keep = np . array ( [ True ] * len ( self . data ) ) for col , values in filters . items ( ) : if values is None : continue if col in self . meta . columns : matches = pattern_match ( self . meta [ col ] , values , regexp = regexp ) ...
Determine rows to keep in data for given set of filters
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def col_apply ( self , col , func , * args , ** kwargs ) : if col in self . data : self . data [ col ] = self . data [ col ] . apply ( func , * args , ** kwargs ) else : self . meta [ col ] = self . meta [ col ] . apply ( func , * args , ** kwargs )
Apply a function to a column
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def _to_file_format ( self , iamc_index ) : df = self . timeseries ( iamc_index = iamc_index ) . reset_index ( ) df = df . rename ( columns = { c : str ( c ) . title ( ) for c in df . columns } ) return df
Return a dataframe suitable for writing to a file
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def to_csv ( self , path , iamc_index = False , ** kwargs ) : self . _to_file_format ( iamc_index ) . to_csv ( path , index = False , ** kwargs )
Write timeseries data to a csv file
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def to_excel ( self , excel_writer , sheet_name = 'data' , iamc_index = False , ** kwargs ) : if not isinstance ( excel_writer , pd . ExcelWriter ) : close = True excel_writer = pd . ExcelWriter ( excel_writer ) self . _to_file_format ( iamc_index ) . to_excel ( excel_writer , sheet_name = sheet_name , index = False , ...
Write timeseries data to Excel format
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def export_metadata ( self , path ) : writer = pd . ExcelWriter ( path ) write_sheet ( writer , 'meta' , self . meta , index = True ) writer . save ( )
Export metadata to Excel
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def load_metadata ( self , path , * args , ** kwargs ) : if not os . path . exists ( path ) : raise ValueError ( "no metadata file '" + path + "' found!" ) if path . endswith ( 'csv' ) : df = pd . read_csv ( path , * args , ** kwargs ) else : xl = pd . ExcelFile ( path ) if len ( xl . sheet_names ) > 1 and 'sheet_name'...
Load metadata exported from pyam . IamDataFrame instance
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def line_plot ( self , x = 'year' , y = 'value' , ** kwargs ) : df = self . as_pandas ( with_metadata = kwargs ) variables = df [ 'variable' ] . unique ( ) if x in variables or y in variables : keep_vars = set ( [ x , y ] ) & set ( variables ) df = df [ df [ 'variable' ] . isin ( keep_vars ) ] idx = list ( set ( df . c...
Plot timeseries lines of existing data
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def stack_plot ( self , * args , ** kwargs ) : df = self . as_pandas ( with_metadata = True ) ax = plotting . stack_plot ( df , * args , ** kwargs ) return ax
Plot timeseries stacks of existing data
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def scatter ( self , x , y , ** kwargs ) : variables = self . data [ 'variable' ] . unique ( ) xisvar = x in variables yisvar = y in variables if not xisvar and not yisvar : cols = [ x , y ] + self . _discover_meta_cols ( ** kwargs ) df = self . meta [ cols ] . reset_index ( ) elif xisvar and yisvar : dfx = ( self . fi...
Plot a scatter chart using metadata columns
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def update ( self , rc ) : rc = self . _load_yaml ( rc ) self . store = _recursive_update ( self . store , rc )
Add additional run control parameters
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def recursive_update ( self , k , d ) : u = self . __getitem__ ( k ) self . store [ k ] = _recursive_update ( u , d )
Recursively update a top - level option in the run control
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def available_metadata ( self ) : url = self . base_url + 'metadata/types' headers = { 'Authorization' : 'Bearer {}' . format ( self . auth ( ) ) } r = requests . get ( url , headers = headers ) return pd . read_json ( r . content , orient = 'records' ) [ 'name' ]
List all scenario metadata indicators available in the connected data source
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def metadata ( self , default = True ) : default = 'true' if default else 'false' add_url = 'runs?getOnlyDefaultRuns={}&includeMetadata=true' url = self . base_url + add_url . format ( default ) headers = { 'Authorization' : 'Bearer {}' . format ( self . auth ( ) ) } r = requests . get ( url , headers = headers ) df = ...
Metadata of scenarios in the connected data source
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def variables ( self ) : url = self . base_url + 'ts' headers = { 'Authorization' : 'Bearer {}' . format ( self . auth ( ) ) } r = requests . get ( url , headers = headers ) df = pd . read_json ( r . content , orient = 'records' ) return pd . Series ( df [ 'variable' ] . unique ( ) , name = 'variable' )
All variables in the connected data source
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def query ( self , ** kwargs ) : headers = { 'Authorization' : 'Bearer {}' . format ( self . auth ( ) ) , 'Content-Type' : 'application/json' , } data = json . dumps ( self . _query_post_data ( ** kwargs ) ) url = self . base_url + 'runs/bulk/ts' r = requests . post ( url , headers = headers , data = data ) df = ( pd ....
Query the data source subselecting data . Available keyword arguments include
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def reindex ( self , copy = True ) : ret = deepcopy ( self ) if copy else self ret . stats = ret . stats . reindex ( index = ret . _idx , level = 0 ) if ret . idx_depth == 2 : ret . stats = ret . stats . reindex ( index = ret . _sub_idx , level = 1 ) if ret . rows is not None : ret . stats = ret . stats . reindex ( ind...
Reindex the summary statistics dataframe
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def summarize ( self , center = 'mean' , fullrange = None , interquartile = None , custom_format = '{:.2f}' ) : self . reindex ( copy = False ) center = 'median' if center == '50%' else center if fullrange is None and interquartile is None : fullrange = True return self . stats . apply ( format_rows , center = center ,...
Format the compiled statistics to a concise string output
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def reset_default_props ( ** kwargs ) : global _DEFAULT_PROPS pcycle = plt . rcParams [ 'axes.prop_cycle' ] _DEFAULT_PROPS = { 'color' : itertools . cycle ( _get_standard_colors ( ** kwargs ) ) if len ( kwargs ) > 0 else itertools . cycle ( [ x [ 'color' ] for x in pcycle ] ) , 'marker' : itertools . cycle ( [ 'o' , 'x...
Reset properties to initial cycle point
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def default_props ( reset = False , ** kwargs ) : global _DEFAULT_PROPS if _DEFAULT_PROPS is None or reset : reset_default_props ( ** kwargs ) return _DEFAULT_PROPS
Return current default properties
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def assign_style_props ( df , color = None , marker = None , linestyle = None , cmap = None ) : if color is None and cmap is not None : raise ValueError ( '`cmap` must be provided with the `color` argument' ) n = len ( df [ color ] . unique ( ) ) if color in df . columns else len ( df [ list ( set ( df . columns ) & se...
Assign the style properties for a plot
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def reshape_line_plot ( df , x , y ) : idx = list ( df . columns . drop ( y ) ) if df . duplicated ( idx ) . any ( ) : warnings . warn ( 'Duplicated index found.' ) df = df . drop_duplicates ( idx , keep = 'last' ) df = df . set_index ( idx ) [ y ] . unstack ( x ) . T return df
Reshape data from long form to line plot form .
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def reshape_bar_plot ( df , x , y , bars ) : idx = [ bars , x ] if df . duplicated ( idx ) . any ( ) : warnings . warn ( 'Duplicated index found.' ) df = df . drop_duplicates ( idx , keep = 'last' ) df = df . set_index ( idx ) [ y ] . unstack ( x ) . T return df
Reshape data from long form to bar plot form .
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def read_shapefile ( fname , region_col = None , ** kwargs ) : gdf = gpd . read_file ( fname , ** kwargs ) if region_col is not None : gdf = gdf . rename ( columns = { region_col : 'region' } ) if 'region' not in gdf . columns : raise IOError ( 'Must provide a region column' ) gdf [ 'region' ] = gdf [ 'region' ] . str ...
Read a shapefile for use in regional plots . Shapefiles must have a column denoted as region .
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def add_net_values_to_bar_plot ( axs , color = 'k' ) : axs = axs if isinstance ( axs , Iterable ) else [ axs ] for ax in axs : box_args = _get_boxes ( ax ) for x , args in box_args . items ( ) : rect = mpatches . Rectangle ( * args , color = color ) ax . add_patch ( rect )
Add net values next to an existing vertical stacked bar chart
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def scatter ( df , x , y , ax = None , legend = None , title = None , color = None , marker = 'o' , linestyle = None , cmap = None , groupby = [ 'model' , 'scenario' ] , with_lines = False , ** kwargs ) : if ax is None : fig , ax = plt . subplots ( ) props = assign_style_props ( df , color = color , marker = marker , l...
Plot data as a scatter chart .
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def logger ( ) : global _LOGGER if _LOGGER is None : logging . basicConfig ( ) _LOGGER = logging . getLogger ( ) _LOGGER . setLevel ( 'INFO' ) return _LOGGER
Access global logger