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def image_height ( image ) : image_size_cache = _get_cache ( 'image_size_cache' ) if not Image : raise SassMissingDependency ( 'PIL' , 'image manipulation' ) filepath = String . unquoted ( image ) . value path = None try : height = image_size_cache [ filepath ] [ 1 ] except KeyError : height = 0 IMAGES_ROOT = _images_r...
Returns the height of the image found at the path supplied by image relative to your project s images directory .
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def path ( self ) : if self . origin : return six . text_type ( self . origin / self . relpath ) else : return six . text_type ( self . relpath )
Concatenation of origin and relpath as a string . Used in stack traces and other debugging places .
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def from_filename ( cls , path_string , origin = MISSING , ** kwargs ) : path = Path ( path_string ) return cls . from_path ( path , origin , ** kwargs )
Read Sass source from a String specifying the path
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def from_file ( cls , f , origin = MISSING , relpath = MISSING , ** kwargs ) : contents = f . read ( ) encoding = determine_encoding ( contents ) if isinstance ( contents , six . binary_type ) : contents = contents . decode ( encoding ) if origin is MISSING or relpath is MISSING : filename = getattr ( f , 'name' , None...
Read Sass source from a file or file - like object .
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def from_string ( cls , string , relpath = None , encoding = None , is_sass = None ) : if isinstance ( string , six . text_type ) : if encoding is None : encoding = determine_encoding ( string ) byte_contents = string . encode ( encoding ) text_contents = string elif isinstance ( string , six . binary_type ) : encoding...
Read Sass source from the contents of a string .
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def hit ( self , rect ) : hits = { tuple ( self . items [ i ] ) for i in rect . collidelistall ( self . items ) } if self . nw and rect . left <= self . cx and rect . top <= self . cy : hits |= self . nw . hit ( rect ) if self . sw and rect . left <= self . cx and rect . bottom >= self . cy : hits |= self . sw . hit ( ...
Returns the items that overlap a bounding rectangle .
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def scroll ( self , vector ) : self . center ( ( vector [ 0 ] + self . view_rect . centerx , vector [ 1 ] + self . view_rect . centery ) )
scroll the background in pixels
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def center ( self , coords ) : x , y = round ( coords [ 0 ] ) , round ( coords [ 1 ] ) self . view_rect . center = x , y mw , mh = self . data . map_size tw , th = self . data . tile_size vw , vh = self . _tile_view . size if self . clamp_camera : self . _anchored_view = True self . view_rect . clamp_ip ( self . map_re...
center the map on a pixel
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def draw ( self , surface , rect , surfaces = None ) : if self . _zoom_level == 1.0 : self . _render_map ( surface , rect , surfaces ) else : self . _render_map ( self . _zoom_buffer , self . _zoom_buffer . get_rect ( ) , surfaces ) self . scaling_function ( self . _zoom_buffer , rect . size , surface ) return self . _...
Draw the map onto a surface
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def set_size ( self , size ) : buffer_size = self . _calculate_zoom_buffer_size ( size , self . _zoom_level ) self . _size = size self . _initialize_buffers ( buffer_size )
Set the size of the map in pixels
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def translate_point ( self , point ) : mx , my = self . get_center_offset ( ) if self . _zoom_level == 1.0 : return point [ 0 ] + mx , point [ 1 ] + my else : return int ( round ( ( point [ 0 ] + mx ) ) * self . _real_ratio_x ) , int ( round ( ( point [ 1 ] + my ) * self . _real_ratio_y ) )
Translate world coordinates and return screen coordinates . Respects zoom level
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def translate_points ( self , points ) : retval = list ( ) append = retval . append sx , sy = self . get_center_offset ( ) if self . _zoom_level == 1.0 : for c in points : append ( ( c [ 0 ] + sx , c [ 1 ] + sy ) ) else : rx = self . _real_ratio_x ry = self . _real_ratio_y for c in points : append ( ( int ( round ( ( c...
Translate coordinates and return screen coordinates
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def _render_map ( self , surface , rect , surfaces ) : self . _tile_queue = self . data . process_animation_queue ( self . _tile_view ) self . _tile_queue and self . _flush_tile_queue ( self . _buffer ) if not self . _anchored_view : self . _clear_surface ( surface , self . _previous_blit ) offset = - self . _x_offset ...
Render the map and optional surfaces to destination surface
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def _clear_surface ( self , surface , rect = None ) : clear_color = self . _rgb_clear_color if self . _clear_color is None else self . _clear_color surface . fill ( clear_color , rect )
Clear the buffer taking in account colorkey or alpha
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def _draw_surfaces ( self , surface , offset , surfaces ) : surface_blit = surface . blit ox , oy = offset left , top = self . _tile_view . topleft hit = self . _layer_quadtree . hit get_tile = self . data . get_tile_image tile_layers = tuple ( self . data . visible_tile_layers ) dirty = list ( ) dirty_append = dirty ....
Draw surfaces onto buffer then redraw tiles that cover them
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def _queue_edge_tiles ( self , dx , dy ) : v = self . _tile_view tw , th = self . data . tile_size self . _tile_queue = iter ( [ ] ) def append ( rect ) : self . _tile_queue = chain ( self . _tile_queue , self . data . get_tile_images_by_rect ( rect ) ) self . _clear_surface ( self . _buffer , ( ( rect [ 0 ] - v . left...
Queue edge tiles and clear edge areas on buffer if needed
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def _create_buffers ( self , view_size , buffer_size ) : requires_zoom_buffer = not view_size == buffer_size self . _zoom_buffer = None if self . _clear_color is None : if requires_zoom_buffer : self . _zoom_buffer = Surface ( view_size ) self . _buffer = Surface ( buffer_size ) elif self . _clear_color == self . _rgba...
Create the buffers taking in account pixel alpha or colorkey
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def reload_animations ( self ) : self . _update_time ( ) self . _animation_queue = list ( ) self . _tracked_gids = set ( ) self . _animation_map = dict ( ) for gid , frame_data in self . get_animations ( ) : self . _tracked_gids . add ( gid ) frames = list ( ) for frame_gid , frame_duration in frame_data : image = self...
Reload animation information
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def get_tile_image ( self , x , y , l ) : try : return self . _animated_tile [ ( x , y , l ) ] except KeyError : return self . _get_tile_image ( x , y , l )
Get a tile image respecting current animations
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def get_tile_images_by_rect ( self , rect ) : x1 , y1 , x2 , y2 = rect_to_bb ( rect ) for layer in self . visible_tile_layers : for y , x in product ( range ( y1 , y2 + 1 ) , range ( x1 , x2 + 1 ) ) : tile = self . get_tile_image ( x , y , layer ) if tile : yield x , y , layer , tile
Given a 2d area return generator of tile images inside
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def convert_surfaces ( self , parent , alpha = False ) : images = list ( ) for i in self . tmx . images : try : if alpha : images . append ( i . convert_alpha ( parent ) ) else : images . append ( i . convert ( parent ) ) except AttributeError : images . append ( None ) self . tmx . images = images
Convert all images in the data to match the parent
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def visible_object_layers ( self ) : return ( layer for layer in self . tmx . visible_layers if isinstance ( layer , pytmx . TiledObjectGroup ) )
This must return layer objects
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def get_tile_images_by_rect ( self , rect ) : def rev ( seq , start , stop ) : if start < 0 : start = 0 return enumerate ( seq [ start : stop + 1 ] , start ) x1 , y1 , x2 , y2 = rect_to_bb ( rect ) images = self . tmx . images layers = self . tmx . layers at = self . _animated_tile tracked_gids = self . _tracked_gids a...
Speed up data access
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def move_back ( self , dt ) : self . _position = self . _old_position self . rect . topleft = self . _position self . feet . midbottom = self . rect . midbottom
If called after an update the sprite can move back
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def handle_input ( self ) : poll = pygame . event . poll event = poll ( ) while event : if event . type == QUIT : self . running = False break elif event . type == KEYDOWN : if event . key == K_ESCAPE : self . running = False break elif event . key == K_EQUALS : self . map_layer . zoom += .25 elif event . key == K_MINU...
Handle pygame input events
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def update ( self , dt ) : self . group . update ( dt ) for sprite in self . group . sprites ( ) : if sprite . feet . collidelist ( self . walls ) > - 1 : sprite . move_back ( dt )
Tasks that occur over time should be handled here
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def run ( self ) : clock = pygame . time . Clock ( ) self . running = True from collections import deque times = deque ( maxlen = 30 ) try : while self . running : dt = clock . tick ( ) / 1000. times . append ( clock . get_fps ( ) ) self . handle_input ( ) self . update ( dt ) self . draw ( screen ) pygame . display . ...
Run the game loop
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def draw ( self , surface ) : ox , oy = self . _map_layer . get_center_offset ( ) new_surfaces = list ( ) spritedict = self . spritedict gl = self . get_layer_of_sprite new_surfaces_append = new_surfaces . append for spr in self . sprites ( ) : new_rect = spr . rect . move ( ox , oy ) try : new_surfaces_append ( ( spr ...
Draw all sprites and map onto the surface
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def center ( self , coords ) : x , y = [ round ( i , 0 ) for i in coords ] self . view_rect . center = x , y tw , th = self . data . tile_size left , ox = divmod ( x , tw ) top , oy = divmod ( y , th ) vec = int ( ox / 2 ) , int ( oy ) iso = vector2_to_iso ( vec ) self . _x_offset = iso [ 0 ] self . _y_offset = iso [ 1...
center the map on a map pixel
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def get_odoo_args ( self , ctx ) : config = ctx . params . get ( "config" ) addons_path = ctx . params . get ( "addons_path" ) database = ctx . params . get ( "database" ) log_level = ctx . params . get ( "log_level" ) logfile = ctx . params . get ( "logfile" ) odoo_args = [ ] if config : odoo_args . extend ( [ "--conf...
Return a list of Odoo command line arguments from the Click context .
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def make_query ( search_term , querytype = 'AdvancedKeywordQuery' ) : assert querytype in { 'HoldingsQuery' , 'ExpTypeQuery' , 'AdvancedKeywordQuery' , 'StructureIdQuery' , 'ModifiedStructuresQuery' , 'AdvancedAuthorQuery' , 'MotifQuery' , 'NoLigandQuery' , 'PubmedIdQuery' } , 'Query type %s not supported yet' % queryt...
Repackage strings into a search dictionary
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def do_protsym_search ( point_group , min_rmsd = 0.0 , max_rmsd = 7.0 ) : query_params = dict ( ) query_params [ 'queryType' ] = 'PointGroupQuery' query_params [ 'rMSDComparator' ] = 'between' query_params [ 'pointGroup' ] = point_group query_params [ 'rMSDMin' ] = min_rmsd query_params [ 'rMSDMax' ] = max_rmsd scan_pa...
Performs a protein symmetry search of the PDB
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def get_all ( ) : url = 'http://www.rcsb.org/pdb/rest/getCurrent' req = urllib . request . Request ( url ) f = urllib . request . urlopen ( req ) result = f . read ( ) assert result kk = str ( result ) p = re . compile ( 'structureId=\"...."' ) matches = p . findall ( str ( result ) ) out = list ( ) for item in matches...
Return a list of all PDB entries currently in the RCSB Protein Data Bank
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def get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/describeMol?structureId=' ) : url = url_root + pdb_id req = urllib . request . Request ( url ) f = urllib . request . urlopen ( req ) result = f . read ( ) assert result out = xmltodict . parse ( result , process_namespaces = True ) return out
Look up all information about a given PDB ID
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def get_pdb_file ( pdb_id , filetype = 'pdb' , compression = False ) : full_url = "https://files.rcsb.org/download/" full_url += pdb_id if ( filetype == 'structfact' ) : full_url += "-sf.cif" else : full_url += "." + filetype if compression : full_url += ".gz" else : pass req = urllib . request . Request ( full_url ) f...
Get the full PDB file associated with a PDB_ID
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def get_all_info ( pdb_id ) : out = to_dict ( get_info ( pdb_id ) ) [ 'molDescription' ] [ 'structureId' ] out = remove_at_sign ( out ) return out
A wrapper for get_info that cleans up the output slighly
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def get_raw_blast ( pdb_id , output_form = 'HTML' , chain_id = 'A' ) : url_root = 'http://www.rcsb.org/pdb/rest/getBlastPDB2?structureId=' url = url_root + pdb_id + '&chainId=' + chain_id + '&outputFormat=' + output_form req = urllib . request . Request ( url ) f = urllib . request . urlopen ( req ) result = f . read (...
Look up full BLAST page for a given PDB ID
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def parse_blast ( blast_string ) : soup = BeautifulSoup ( str ( blast_string ) , "html.parser" ) all_blasts = list ( ) all_blast_ids = list ( ) pattern = '></a>....:' prog = re . compile ( pattern ) for item in soup . find_all ( 'pre' ) : if len ( item . find_all ( 'a' ) ) == 1 : all_blasts . append ( item ) blast_id =...
Clean up HTML BLAST results
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def get_blast2 ( pdb_id , chain_id = 'A' , output_form = 'HTML' ) : raw_results = get_raw_blast ( pdb_id , chain_id = chain_id , output_form = output_form ) out = parse_blast ( raw_results ) return out
Alternative way to look up BLAST for a given PDB ID . This function is a wrapper for get_raw_blast and parse_blast
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def describe_pdb ( pdb_id ) : out = get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/describePDB?structureId=' ) out = to_dict ( out ) out = remove_at_sign ( out [ 'PDBdescription' ] [ 'PDB' ] ) return out
Get description and metadata of a PDB entry
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def get_entity_info ( pdb_id ) : out = get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/getEntityInfo?structureId=' ) out = to_dict ( out ) return remove_at_sign ( out [ 'entityInfo' ] [ 'PDB' ] )
Return pdb id information
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def get_ligands ( pdb_id ) : out = get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/ligandInfo?structureId=' ) out = to_dict ( out ) return remove_at_sign ( out [ 'structureId' ] )
Return ligands of given PDB ID
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def get_gene_onto ( pdb_id ) : out = get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/goTerms?structureId=' ) out = to_dict ( out ) if not out [ 'goTerms' ] : return None out = remove_at_sign ( out [ 'goTerms' ] ) return out
Return ligands of given PDB_ID
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def get_seq_cluster ( pdb_id_chain ) : url_root = 'http://www.rcsb.org/pdb/rest/sequenceCluster?structureId=' out = get_info ( pdb_id_chain , url_root = url_root ) out = to_dict ( out ) return remove_at_sign ( out [ 'sequenceCluster' ] )
Get the sequence cluster of a PDB ID plus a pdb_id plus a chain
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def get_pfam ( pdb_id ) : out = get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/hmmer?structureId=' ) out = to_dict ( out ) if not out [ 'hmmer3' ] : return dict ( ) return remove_at_sign ( out [ 'hmmer3' ] )
Return PFAM annotations of given PDB_ID
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def get_clusters ( pdb_id ) : out = get_info ( pdb_id , url_root = 'http://www.rcsb.org/pdb/rest/representatives?structureId=' ) out = to_dict ( out ) return remove_at_sign ( out [ 'representatives' ] )
Return cluster related web services of given PDB_ID
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def find_results_gen ( search_term , field = 'title' ) : scan_params = make_query ( search_term , querytype = 'AdvancedKeywordQuery' ) search_result_ids = do_search ( scan_params ) all_titles = [ ] for pdb_result in search_result_ids : result = describe_pdb ( pdb_result ) if field in result . keys ( ) : yield result [ ...
Return a generator of the results returned by a search of the protein data bank . This generator is used internally .
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def parse_results_gen ( search_term , field = 'title' , max_results = 100 , sleep_time = .1 ) : if max_results * sleep_time > 30 : warnings . warn ( "Because of API limitations, this function\ will take at least " + str ( max_results * sleep_time ) + " seconds to return results.\ If you need greater speed...
Query the PDB with a search term and field while respecting the query frequency limitations of the API .
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def find_papers ( search_term , ** kwargs ) : all_papers = parse_results_gen ( search_term , field = 'title' , ** kwargs ) return remove_dupes ( all_papers )
Return an ordered list of the top papers returned by a keyword search of the RCSB PDB
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def find_authors ( search_term , ** kwargs ) : all_individuals = parse_results_gen ( search_term , field = 'citation_authors' , ** kwargs ) full_author_list = [ ] for individual in all_individuals : individual = individual . replace ( '.,' , '.;' ) author_list_clean = [ x . strip ( ) for x in individual . split ( ';' )...
Return an ordered list of the top authors returned by a keyword search of the RCSB PDB
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def list_taxa ( pdb_list , sleep_time = .1 ) : if len ( pdb_list ) * sleep_time > 30 : warnings . warn ( "Because of API limitations, this function\ will take at least " + str ( len ( pdb_list ) * sleep_time ) + " seconds to return results.\ If you need greater speed, try modifying the optional argument s...
Given a list of PDB IDs look up their associated species
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def list_types ( pdb_list , sleep_time = .1 ) : if len ( pdb_list ) * sleep_time > 30 : warnings . warn ( "Because of API limitations, this function\ will take at least " + str ( len ( pdb_list ) * sleep_time ) + " seconds to return results.\ If you need greater speed, try modifying the optional argument ...
Given a list of PDB IDs look up their associated structure type
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def remove_dupes ( list_with_dupes ) : visited = set ( ) visited_add = visited . add out = [ entry for entry in list_with_dupes if not ( entry in visited or visited_add ( entry ) ) ] return out
Remove duplicate entries from a list while preserving order
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def download_file_from_google_drive ( file_id , dest_path , overwrite = False , unzip = False , showsize = False ) : destination_directory = dirname ( dest_path ) if not exists ( destination_directory ) : makedirs ( destination_directory ) if not exists ( dest_path ) or overwrite : session = requests . Session ( ) prin...
Downloads a shared file from google drive into a given folder . Optionally unzips it .
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def handle_connection ( stream ) : ws = WSConnection ( ConnectionType . SERVER ) events = ws . events ( ) running = True while running : in_data = stream . recv ( RECEIVE_BYTES ) print ( 'Received {} bytes' . format ( len ( in_data ) ) ) ws . receive_data ( in_data ) try : event = next ( events ) except StopIteration :...
Handle a connection .
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def receive_data ( self , data ) : if data is None : self . _events . append ( CloseConnection ( code = CloseReason . ABNORMAL_CLOSURE ) ) self . _state = ConnectionState . CLOSED return if self . state in ( ConnectionState . OPEN , ConnectionState . LOCAL_CLOSING ) : self . _proto . receive_bytes ( data ) elif self . ...
Pass some received data to the connection for handling .
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def events ( self ) : while self . _events : yield self . _events . popleft ( ) try : for frame in self . _proto . received_frames ( ) : if frame . opcode is Opcode . PING : assert frame . frame_finished and frame . message_finished yield Ping ( payload = frame . payload ) elif frame . opcode is Opcode . PONG : assert ...
Return a generator that provides any events that have been generated by protocol activity .
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def server_extensions_handshake ( requested , supported ) : accepts = { } for offer in requested : name = offer . split ( ";" , 1 ) [ 0 ] . strip ( ) for extension in supported : if extension . name == name : accept = extension . accept ( offer ) if accept is True : accepts [ extension . name ] = True elif accept is no...
Agree on the extensions to use returning an appropriate header value .
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def initiate_upgrade_connection ( self , headers , path ) : if self . client : raise LocalProtocolError ( "Cannot initiate an upgrade connection when acting as the client" ) upgrade_request = h11 . Request ( method = b"GET" , target = path , headers = headers ) h11_client = h11 . Connection ( h11 . CLIENT ) self . rece...
Initiate an upgrade connection .
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def send ( self , event ) : data = b"" if isinstance ( event , Request ) : data += self . _initiate_connection ( event ) elif isinstance ( event , AcceptConnection ) : data += self . _accept ( event ) elif isinstance ( event , RejectConnection ) : data += self . _reject ( event ) elif isinstance ( event , RejectData ) ...
Send an event to the remote .
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def receive_data ( self , data ) : self . _h11_connection . receive_data ( data ) while True : try : event = self . _h11_connection . next_event ( ) except h11 . RemoteProtocolError : raise RemoteProtocolError ( "Bad HTTP message" , event_hint = RejectConnection ( ) ) if ( isinstance ( event , h11 . ConnectionClosed ) ...
Receive data from the remote .
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def net_send ( out_data , conn ) : print ( 'Sending {} bytes' . format ( len ( out_data ) ) ) conn . send ( out_data )
Write pending data from websocket to network .
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def net_recv ( ws , conn ) : in_data = conn . recv ( RECEIVE_BYTES ) if not in_data : print ( 'Received 0 bytes (connection closed)' ) ws . receive_data ( None ) else : print ( 'Received {} bytes' . format ( len ( in_data ) ) ) ws . receive_data ( in_data )
Read pending data from network into websocket .
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def check_filter ( filter , layer = Layer . NETWORK ) : res , pos , msg = False , c_uint ( ) , c_char_p ( ) try : res = windivert_dll . WinDivertHelperCheckFilter ( filter . encode ( ) , layer , byref ( msg ) , byref ( pos ) ) except OSError : pass return res , pos . value , msg . value . decode ( )
Checks if the given packet filter string is valid with respect to the filter language .
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def recv ( self , bufsize = DEFAULT_PACKET_BUFFER_SIZE ) : if self . _handle is None : raise RuntimeError ( "WinDivert handle is not open" ) packet = bytearray ( bufsize ) packet_ = ( c_char * bufsize ) . from_buffer ( packet ) address = windivert_dll . WinDivertAddress ( ) recv_len = c_uint ( 0 ) windivert_dll . WinDi...
Receives a diverted packet that matched the filter .
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def send ( self , packet , recalculate_checksum = True ) : if recalculate_checksum : packet . recalculate_checksums ( ) send_len = c_uint ( 0 ) if PY2 : buff = bytearray ( packet . raw ) else : buff = packet . raw buff = ( c_char * len ( packet . raw ) ) . from_buffer ( buff ) windivert_dll . WinDivertSend ( self . _ha...
Injects a packet into the network stack . Recalculates the checksum before sending unless recalculate_checksum = False is passed .
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def get_param ( self , name ) : value = c_uint64 ( 0 ) windivert_dll . WinDivertGetParam ( self . _handle , name , byref ( value ) ) return value . value
Get a WinDivert parameter . See pydivert . Param for the list of parameters .
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def set_param ( self , name , value ) : return windivert_dll . WinDivertSetParam ( self . _handle , name , value )
Set a WinDivert parameter . See pydivert . Param for the list of parameters .
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def _init ( ) : i = instance ( ) for funcname in WINDIVERT_FUNCTIONS : func = getattr ( i , funcname ) func = raise_on_error ( func ) setattr ( _module , funcname , func )
Lazy - load DLL replace proxy functions with actual ones .
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def _mkprox ( funcname ) : def prox ( * args , ** kwargs ) : _init ( ) return getattr ( _module , funcname ) ( * args , ** kwargs ) return prox
Make lazy - init proxy function .
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def src_addr ( self ) : try : return socket . inet_ntop ( self . _af , self . raw [ self . _src_addr ] . tobytes ( ) ) except ( ValueError , socket . error ) : pass
The packet source address .
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def dst_addr ( self ) : try : return socket . inet_ntop ( self . _af , self . raw [ self . _dst_addr ] . tobytes ( ) ) except ( ValueError , socket . error ) : pass
The packet destination address .
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def icmpv4 ( self ) : ipproto , proto_start = self . protocol if ipproto == Protocol . ICMP : return ICMPv4Header ( self , proto_start )
- An ICMPv4Header instance if the packet is valid ICMPv4 . - None otherwise .
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def icmpv6 ( self ) : ipproto , proto_start = self . protocol if ipproto == Protocol . ICMPV6 : return ICMPv6Header ( self , proto_start )
- An ICMPv6Header instance if the packet is valid ICMPv6 . - None otherwise .
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def tcp ( self ) : ipproto , proto_start = self . protocol if ipproto == Protocol . TCP : return TCPHeader ( self , proto_start )
- An TCPHeader instance if the packet is valid TCP . - None otherwise .
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def udp ( self ) : ipproto , proto_start = self . protocol if ipproto == Protocol . UDP : return UDPHeader ( self , proto_start )
- An TCPHeader instance if the packet is valid UDP . - None otherwise .
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def _payload ( self ) : return self . tcp or self . udp or self . icmpv4 or self . icmpv6
header that implements PayloadMixin
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def matches ( self , filter , layer = Layer . NETWORK ) : buff , buff_ = self . __to_buffers ( ) return windivert_dll . WinDivertHelperEvalFilter ( filter . encode ( ) , layer , ctypes . byref ( buff_ ) , len ( self . raw ) , ctypes . byref ( self . wd_addr ) )
Evaluates the packet against the given packet filter string .
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def init ( project_name ) : project_obj = ProjectClient ( ) . get_by_name ( project_name ) if not project_obj : namespace , name = get_namespace_from_name ( project_name ) create_project_base_url = "{}/projects/create" . format ( floyd . floyd_web_host ) create_project_url = "{}?name={}&namespace={}" . format ( create_...
Initialize new project at the current path .
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def status ( id ) : if id : try : experiment = ExperimentClient ( ) . get ( normalize_job_name ( id ) ) except FloydException : experiment = ExperimentClient ( ) . get ( id ) print_experiments ( [ experiment ] ) else : experiments = ExperimentClient ( ) . get_all ( ) print_experiments ( experiments )
View status of all jobs in a project .
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def print_experiments ( experiments ) : headers = [ "JOB NAME" , "CREATED" , "STATUS" , "DURATION(s)" , "INSTANCE" , "DESCRIPTION" , "METRICS" ] expt_list = [ ] for experiment in experiments : expt_list . append ( [ normalize_job_name ( experiment . name ) , experiment . created_pretty , experiment . state , experiment...
Prints job details in a table . Includes urls and mode parameters
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def clone ( id , path ) : try : experiment = ExperimentClient ( ) . get ( normalize_job_name ( id , use_config = False ) ) except FloydException : experiment = ExperimentClient ( ) . get ( id ) task_instance_id = get_module_task_instance_id ( experiment . task_instances ) task_instance = TaskInstanceClient ( ) . get ( ...
- Download all files from a job
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def info ( job_name_or_id ) : try : experiment = ExperimentClient ( ) . get ( normalize_job_name ( job_name_or_id ) ) except FloydException : experiment = ExperimentClient ( ) . get ( job_name_or_id ) task_instance_id = get_module_task_instance_id ( experiment . task_instances ) task_instance = TaskInstanceClient ( ) ....
View detailed information of a job .
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def follow_logs ( instance_log_id , sleep_duration = 1 ) : cur_idx = 0 job_terminated = False while not job_terminated : log_file_contents = ResourceClient ( ) . get_content ( instance_log_id ) print_output = log_file_contents [ cur_idx : ] job_terminated = any ( terminal_output in print_output for terminal_output in T...
Follow the logs until Job termination .
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def logs ( id , url , follow , sleep_duration = 1 ) : instance_log_id = get_log_id ( id ) if url : log_url = "{}/api/v1/resources/{}?content=true" . format ( floyd . floyd_host , instance_log_id ) floyd_logger . info ( log_url ) return if follow : floyd_logger . info ( "Launching job ..." ) follow_logs ( instance_log_i...
View the logs of a job .
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def output ( id , url ) : try : experiment = ExperimentClient ( ) . get ( normalize_job_name ( id ) ) except FloydException : experiment = ExperimentClient ( ) . get ( id ) output_dir_url = "%s/%s/files" % ( floyd . floyd_web_host , experiment . name ) if url : floyd_logger . info ( output_dir_url ) else : floyd_logger...
View the files from a job .
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def stop ( id ) : try : experiment = ExperimentClient ( ) . get ( normalize_job_name ( id ) ) except FloydException : experiment = ExperimentClient ( ) . get ( id ) if experiment . state not in [ "queued" , "queue_scheduled" , "running" ] : floyd_logger . info ( "Job in {} state cannot be stopped" . format ( experiment...
Stop a running job .
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def delete ( names , yes ) : failures = False for name in names : try : experiment = ExperimentClient ( ) . get ( normalize_job_name ( name ) ) except FloydException : experiment = ExperimentClient ( ) . get ( name ) if not experiment : failures = True continue if not yes and not click . confirm ( "Delete Job: {}?" . f...
Delete a training job .
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def version ( ) : import pkg_resources version = pkg_resources . require ( PROJECT_NAME ) [ 0 ] . version floyd_logger . info ( version )
View the current version of the CLI .
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def init ( dataset_name ) : dataset_obj = DatasetClient ( ) . get_by_name ( dataset_name ) if not dataset_obj : namespace , name = get_namespace_from_name ( dataset_name ) create_dataset_base_url = "{}/datasets/create" . format ( floyd . floyd_web_host ) create_dataset_url = "{}?name={}&namespace={}" . format ( create_...
Initialize a new dataset at the current dir .
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def upload ( resume , message ) : data_config = DataConfigManager . get_config ( ) if not upload_is_resumable ( data_config ) or not opt_to_resume ( resume ) : abort_previous_upload ( data_config ) access_token = AuthConfigManager . get_access_token ( ) initialize_new_upload ( data_config , access_token , message ) com...
Upload files in the current dir to FloydHub .
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def status ( id ) : if id : data_source = get_data_object ( id , use_data_config = False ) print_data ( [ data_source ] if data_source else [ ] ) else : data_sources = DataClient ( ) . get_all ( ) print_data ( data_sources )
View status of all versions in a dataset .
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def get_data_object ( data_id , use_data_config = True ) : normalized_data_reference = normalize_data_name ( data_id , use_data_config = use_data_config ) client = DataClient ( ) data_obj = client . get ( normalized_data_reference ) if not data_obj and data_id != normalized_data_reference : data_obj = client . get ( da...
Normalize the data_id and query the server . If that is unavailable try the raw ID
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def print_data ( data_sources ) : if not data_sources : return headers = [ "DATA NAME" , "CREATED" , "STATUS" , "DISK USAGE" ] data_list = [ ] for data_source in data_sources : data_list . append ( [ data_source . name , data_source . created_pretty , data_source . state , data_source . size ] ) floyd_logger . info ( t...
Print dataset information in tabular form
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def clone ( id , path ) : data_source = get_data_object ( id , use_data_config = False ) if not data_source : if 'output' in id : floyd_logger . info ( "Note: You cannot clone the output of a running job. You need to wait for it to finish." ) sys . exit ( ) if path : if '/datasets/' in id : resource_type = 'data' resou...
- Download all files in a dataset or from a Job output
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def listfiles ( data_name ) : data_source = get_data_object ( data_name , use_data_config = False ) if not data_source : if 'output' in data_name : floyd_logger . info ( "Note: You cannot clone the output of a running job. You need to wait for it to finish." ) sys . exit ( ) dirs = [ '' ] paths = [ ] while dirs : cur_d...
List files in a dataset .
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def getfile ( data_name , path ) : data_source = get_data_object ( data_name , use_data_config = False ) if not data_source : if 'output' in data_name : floyd_logger . info ( "Note: You cannot clone the output of a running job. You need to wait for it to finish." ) sys . exit ( ) url = "{}/api/v1/resources/{}/{}?conten...
Download a specific file from a dataset .
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def output ( id , url ) : data_source = get_data_object ( id , use_data_config = False ) if not data_source : sys . exit ( ) data_url = "%s/%s" % ( floyd . floyd_web_host , data_source . name ) if url : floyd_logger . info ( data_url ) else : floyd_logger . info ( "Opening output directory in your browser ..." ) webbro...
View the files from a dataset .
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def delete ( ids , yes ) : failures = False for id in ids : data_source = get_data_object ( id , use_data_config = True ) if not data_source : failures = True continue data_name = normalize_data_name ( data_source . name ) suffix = data_name . split ( '/' ) [ - 1 ] if not suffix . isdigit ( ) : failures = True floyd_lo...
Delete datasets .
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def add ( source ) : new_data = DatasetClient ( ) . add_data ( source ) print_data ( [ DataClient ( ) . get ( new_data [ 'data_id' ] ) ] )
Create a new dataset version from the contents of a job .