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def newton ( f , x , verbose = False , tol = 1e-6 , maxit = 5 , jactype = 'serial' ) : if verbose : print = lambda txt : old_print ( txt ) else : print = lambda txt : None it = 0 error = 10 converged = False maxbacksteps = 30 x0 = x if jactype == 'sparse' : from scipy . sparse . linalg import spsolve as solve elif jact...
Solve nonlinear system using safeguarded Newton iterations
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def qzordered ( A , B , crit = 1.0 ) : "Eigenvalues bigger than crit are sorted in the top-left." TOL = 1e-10 def select ( alpha , beta ) : return alpha ** 2 > crit * beta ** 2 [ S , T , alpha , beta , U , V ] = ordqz ( A , B , output = 'real' , sort = select ) eigval = abs ( numpy . diag ( S ) / numpy . diag ( T ) ) r...
Eigenvalues bigger than crit are sorted in the top - left .
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def ordqz ( A , B , sort = 'lhp' , output = 'real' , overwrite_a = False , overwrite_b = False , check_finite = True ) : import warnings import numpy as np from numpy import asarray_chkfinite from scipy . linalg . misc import LinAlgError , _datacopied from scipy . linalg . lapack import get_lapack_funcs from scipy . _l...
QZ decomposition for a pair of matrices with reordering .
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def parameterized_expectations_direct ( model , verbose = False , initial_dr = None , pert_order = 1 , grid = { } , distribution = { } , maxit = 100 , tol = 1e-8 ) : t1 = time . time ( ) g = model . functions [ 'transition' ] d = model . functions [ 'direct_response' ] h = model . functions [ 'expectation' ] parms = mo...
Finds a global solution for model using parameterized expectations function . Requires the model to be written with controls as a direct function of the model objects .
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def numdiff ( fun , args ) : epsilon = 1e-8 args = list ( args ) v0 = fun ( * args ) N = v0 . shape [ 0 ] l_v = len ( v0 ) dvs = [ ] for i , a in enumerate ( args ) : l_a = ( a ) . shape [ 1 ] dv = numpy . zeros ( ( N , l_v , l_a ) ) nargs = list ( args ) for j in range ( l_a ) : xx = args [ i ] . copy ( ) xx [ : , j ]...
Vectorized numerical differentiation
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def bandpass_filter ( data , k , w1 , w2 ) : data = np . asarray ( data ) low_w = np . pi * 2 / w2 high_w = np . pi * 2 / w1 bweights = np . zeros ( 2 * k + 1 ) bweights [ k ] = ( high_w - low_w ) / np . pi j = np . arange ( 1 , int ( k ) + 1 ) weights = 1 / ( np . pi * j ) * ( sin ( high_w * j ) - sin ( low_w * j ) ) ...
This function will apply a bandpass filter to data . It will be kth order and will select the band between w1 and w2 .
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def dprint ( s ) : import inspect frameinfo = inspect . stack ( ) [ 1 ] callerframe = frameinfo . frame d = callerframe . f_locals if ( isinstance ( s , str ) ) : val = eval ( s , d ) else : val = s cc = frameinfo . code_context [ 0 ] import re regex = re . compile ( "dprint\((.*)\)" ) res = regex . search ( cc ) s = r...
Prints s with additional debugging informations
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def non_decreasing_series ( n , size ) : if size == 1 : return [ [ a ] for a in range ( n ) ] else : lc = non_decreasing_series ( n , size - 1 ) ll = [ ] for l in lc : last = l [ - 1 ] for i in range ( last , n ) : e = l + [ i ] ll . append ( e ) return ll
Lists all combinations of 0 ... n - 1 in increasing order
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def higher_order_diff ( eqs , syms , order = 2 ) : import numpy eqs = list ( [ sympy . sympify ( eq ) for eq in eqs ] ) syms = list ( [ sympy . sympify ( s ) for s in syms ] ) neq = len ( eqs ) p = len ( syms ) D = [ numpy . array ( eqs ) ] orders = [ ] for i in range ( 1 , order + 1 ) : par = D [ i - 1 ] mat = numpy ....
Takes higher order derivatives of a list of equations w . r . t a list of paramters
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def get_ranked_players ( ) : rankings_page = requests . get ( RANKINGS_URL ) root = etree . HTML ( rankings_page . text ) player_rows = root . xpath ( '//div[@id="ranked"]//tr' ) for row in player_rows [ 1 : ] : player_row = row . xpath ( 'td[@class!="country"]//text()' ) yield _Player ( name = player_row [ 1 ] , count...
Get the list of the first 100 ranked players .
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def difference ( cls , first , second ) : first , second = cls ( first ) , cls ( second ) rank_list = list ( cls ) return abs ( rank_list . index ( first ) - rank_list . index ( second ) )
Tells the numerical difference between two ranks .
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def make_random ( cls ) : self = object . __new__ ( cls ) self . rank = Rank . make_random ( ) self . suit = Suit . make_random ( ) return self
Returns a random Card instance .
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def twoplustwo_player ( username ) : from . website . twoplustwo import ForumMember , AmbiguousUserNameError , UserNotFoundError try : member = ForumMember ( username ) except UserNotFoundError : raise click . ClickException ( 'User "%s" not found!' % username ) except AmbiguousUserNameError as e : click . echo ( 'Got ...
Get profile information about a Two plus Two Forum member given the username .
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def p5list ( num ) : from . website . pocketfives import get_ranked_players format_str = '{:>4.4} {!s:<15.13}{!s:<18.15}{!s:<9.6}{!s:<10.7}' '{!s:<14.11}{!s:<12.9}{!s:<12.9}{!s:<12.9}{!s:<4.4}' click . echo ( format_str . format ( 'Rank' , 'Player name' , 'Country' , 'Triple' , 'Monthly' , 'Biggest cash' , 'PLB score...
List pocketfives ranked players max 100 if no NUM or NUM if specified .
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def psstatus ( ) : from . website . pokerstars import get_status _print_header ( 'PokerStars status' ) status = get_status ( ) _print_values ( ( 'Info updated' , status . updated ) , ( 'Tables' , status . tables ) , ( 'Players' , status . players ) , ( 'Active tournaments' , status . active_tournaments ) , ( 'Total tou...
Shows PokerStars status such as number of players tournaments .
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def notes ( self ) : return tuple ( self . _get_note_data ( note ) for note in self . root . iter ( 'note' ) )
Tuple of notes ..
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def labels ( self ) : return tuple ( _Label ( label . get ( 'id' ) , label . get ( 'color' ) , label . text ) for label in self . root . iter ( 'label' ) )
Tuple of labels .
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def add_note ( self , player , text , label = None , update = None ) : if label is not None and ( label not in self . label_names ) : raise LabelNotFoundError ( 'Invalid label: {}' . format ( label ) ) if update is None : update = datetime . utcnow ( ) update = update . strftime ( '%s' ) label_id = self . _get_label_id...
Add a note to the xml . If update param is None it will be the current time .
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def append_note ( self , player , text ) : note = self . _find_note ( player ) note . text += text
Append text to an already existing note .
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def prepend_note ( self , player , text ) : note = self . _find_note ( player ) note . text = text + note . text
Prepend text to an already existing note .
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def get_label ( self , name ) : label_tag = self . _find_label ( name ) return _Label ( label_tag . get ( 'id' ) , label_tag . get ( 'color' ) , label_tag . text )
Find the label by name .
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def add_label ( self , name , color ) : color_upper = color . upper ( ) if not self . _color_re . match ( color_upper ) : raise ValueError ( 'Invalid color: {}' . format ( color ) ) labels_tag = self . root [ 0 ] last_id = int ( labels_tag [ - 1 ] . get ( 'id' ) ) new_id = str ( last_id + 1 ) new_label = etree . Elemen...
Add a new label . It s id will automatically be calculated .
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def del_label ( self , name ) : labels_tag = self . root [ 0 ] labels_tag . remove ( self . _find_label ( name ) )
Delete a label by name .
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def save ( self , filename ) : with open ( filename , 'w' ) as fp : fp . write ( str ( self ) )
Save the note XML to a file .
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def board ( self ) : board = [ ] if self . flop : board . extend ( self . flop . cards ) if self . turn : board . append ( self . turn ) if self . river : board . append ( self . river ) return tuple ( board ) if board else None
Calculates board from flop turn and river .
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def _parse_date ( self , date_string ) : date = datetime . strptime ( date_string , self . _DATE_FORMAT ) self . date = self . _TZ . localize ( date ) . astimezone ( pytz . UTC )
Parse the date_string and return a datetime object as UTC .
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def _split_raw ( self ) : self . _splitted = self . _split_re . split ( self . raw ) self . _sections = [ ind for ind , elem in enumerate ( self . _splitted ) if not elem ]
Split hand history by sections .
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def _get_timezone ( self , root ) : tz_str = root . xpath ( '//div[@class="smallfont" and @align="center"]' ) [ 0 ] . text hours = int ( self . _tz_re . search ( tz_str ) . group ( 1 ) ) return tzoffset ( tz_str , hours * 60 )
Find timezone informatation on bottom of the page .
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def get_current_tournaments ( ) : schedule_page = requests . get ( TOURNAMENTS_XML_URL ) root = etree . XML ( schedule_page . content ) for tour in root . iter ( '{*}tournament' ) : yield _Tournament ( start_date = tour . findtext ( '{*}start_date' ) , name = tour . findtext ( '{*}name' ) , game = tour . findtext ( '{*...
Get the next 200 tournaments from pokerstars .
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def _filter_file ( src , dest , subst ) : substre = re . compile ( r'\$(%s)' % '|' . join ( subst . keys ( ) ) ) def repl ( m ) : return subst [ m . group ( 1 ) ] with open ( src , "rt" ) as sf , open ( dest , "wt" ) as df : while True : l = sf . readline ( ) if not l : break df . write ( re . sub ( substre , repl , l ...
Copy src to dest doing substitutions on the fly .
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def _fixup_graphql_error ( self , data ) : original_data = data errors = data . get ( 'errors' ) original_errors = errors if not isinstance ( errors , list ) : self . logger . warning ( 'data["errors"] is not a list! Fix up data=%r' , data ) data = data . copy ( ) data [ 'errors' ] = [ { 'message' : str ( errors ) } ] ...
Given a possible GraphQL error payload make sure it s in shape .
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def snippet ( code , locations , sep = ' | ' , colmark = ( '-' , '^' ) , context = 5 ) : if not locations : return [ ] lines = code . split ( '\n' ) offset = int ( len ( lines ) / 10 ) + 1 linenofmt = '%{}d' . format ( offset ) s = [ ] for loc in locations : line = max ( 0 , loc . get ( 'line' , 1 ) - 1 ) column = max ...
Given a code and list of locations convert to snippet lines .
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def _create_non_null_wrapper ( name , t ) : 'creates type wrapper for non-null of given type' def __new__ ( cls , json_data , selection_list = None ) : if json_data is None : raise ValueError ( name + ' received null value' ) return t ( json_data , selection_list ) def __to_graphql_input__ ( value , indent = 0 , indent...
creates type wrapper for non - null of given type
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def _create_list_of_wrapper ( name , t ) : 'creates type wrapper for list of given type' def __new__ ( cls , json_data , selection_list = None ) : if json_data is None : return None return [ t ( v , selection_list ) for v in json_data ] def __to_graphql_input__ ( value , indent = 0 , indent_string = ' ' ) : r = [ ] fo...
creates type wrapper for list of given type
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def add_query_to_url ( url , extra_query ) : split = urllib . parse . urlsplit ( url ) merged_query = urllib . parse . parse_qsl ( split . query ) if isinstance ( extra_query , dict ) : for k , v in extra_query . items ( ) : if not isinstance ( v , ( tuple , list ) ) : merged_query . append ( ( k , v ) ) else : for cv ...
Adds an extra query to URL returning the new URL .
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def connection_args ( * lst , ** mapping ) : pd = ArgDict ( * lst , ** mapping ) pd . setdefault ( 'after' , String ) pd . setdefault ( 'before' , String ) pd . setdefault ( 'first' , Int ) pd . setdefault ( 'last' , Int ) return pd
Returns the default parameters for connection .
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def msjd ( theta ) : s = 0. for p in theta . dtype . names : s += np . sum ( np . diff ( theta [ p ] , axis = 0 ) ** 2 ) return s
Mean squared jumping distance .
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def loglik ( self , theta , t = None ) : if t is None : t = self . T - 1 l = np . zeros ( shape = theta . shape [ 0 ] ) for s in range ( t + 1 ) : l += self . logpyt ( theta , s ) return l
log - likelihood at given parameter values .
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def logpost ( self , theta , t = None ) : return self . prior . logpdf ( theta ) + self . loglik ( theta , t )
Posterior log - density at given parameter values .
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def copyto ( self , src , where = None ) : for n , _ in enumerate ( self . l ) : if where [ n ] : self . l [ n ] = src . l [ n ]
Same syntax and functionality as numpy . copyto
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def copy ( self ) : attrs = { k : self . __dict__ [ k ] . copy ( ) for k in self . containers } attrs . update ( { k : cp . deepcopy ( self . __dict__ [ k ] ) for k in self . shared } ) return self . __class__ ( ** attrs )
Returns a copy of the object .
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def copyto ( self , src , where = None ) : for k in self . containers : v = self . __dict__ [ k ] if isinstance ( v , np . ndarray ) : np . copyto ( v , src . __dict__ [ k ] , where = where ) else : v . copyto ( src . __dict__ [ k ] , where = where )
Emulates function copyto in NumPy .
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def copyto_at ( self , n , src , m ) : for k in self . containers : self . __dict__ [ k ] [ n ] = src . __dict__ [ k ] [ m ]
Copy to at a given location .
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def Metropolis ( self , compute_target , mh_options ) : opts = mh_options . copy ( ) nsteps = opts . pop ( 'nsteps' , 0 ) delta_dist = opts . pop ( 'delta_dist' , 0.1 ) proposal = self . choose_proposal ( ** opts ) xout = self . copy ( ) xp = self . __class__ ( theta = np . empty_like ( self . theta ) ) step_ars = [ ] ...
Performs a certain number of Metropolis steps .
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def backward ( self ) : if not self . filt : self . forward ( ) self . smth = [ self . filt [ - 1 ] ] log_trans = np . log ( self . hmm . trans_mat ) ctg = np . zeros ( self . hmm . dim ) for filt , next_ft in reversed ( list ( zip ( self . filt [ : - 1 ] , self . logft [ 1 : ] ) ) ) : new_ctg = np . empty ( self . hmm...
Backward recursion .
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def predict_step ( F , covX , filt ) : pred_mean = np . matmul ( filt . mean , F . T ) pred_cov = dotdot ( F , filt . cov , F . T ) + covX return MeanAndCov ( mean = pred_mean , cov = pred_cov )
Predictive step of Kalman filter .
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def filter_step ( G , covY , pred , yt ) : data_pred_mean = np . matmul ( pred . mean , G . T ) data_pred_cov = dotdot ( G , pred . cov , G . T ) + covY if covY . shape [ 0 ] == 1 : logpyt = dists . Normal ( loc = data_pred_mean , scale = np . sqrt ( data_pred_cov ) ) . logpdf ( yt ) else : logpyt = dists . MvNormal ( ...
Filtering step of Kalman filter .
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def check_shapes ( self ) : assert self . covX . shape == ( self . dx , self . dx ) , error_msg assert self . covY . shape == ( self . dy , self . dy ) , error_msg assert self . F . shape == ( self . dx , self . dx ) , error_msg assert self . G . shape == ( self . dy , self . dx ) , error_msg assert self . mu0 . shape ...
Check all dimensions are correct .
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def sobol ( N , dim , scrambled = 1 ) : while ( True ) : seed = np . random . randint ( 2 ** 32 ) out = lowdiscrepancy . sobol ( N , dim , scrambled , seed , 1 , 0 ) if ( scrambled == 0 ) or ( ( out < 1. ) . all ( ) and ( out > 0. ) . all ( ) ) : return out
Sobol sequence .
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def smoothing_worker ( method = None , N = 100 , seed = None , fk = None , fk_info = None , add_func = None , log_gamma = None ) : T = fk . T if fk_info is None : fk_info = fk . __class__ ( ssm = fk . ssm , data = fk . data [ : : - 1 ] ) if seed : random . seed ( seed ) est = np . zeros ( T - 1 ) if method == 'FFBS_QMC...
Generic worker for off - line smoothing algorithms .
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def save ( self , X = None , w = None , A = None ) : self . X . append ( X ) self . wgt . append ( w ) self . A . append ( A )
Save one page of history at a given time .
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def extract_one_trajectory ( self ) : traj = [ ] for t in reversed ( range ( self . T ) ) : if t == self . T - 1 : n = rs . multinomial_once ( self . wgt [ - 1 ] . W ) else : n = self . A [ t + 1 ] [ n ] traj . append ( self . X [ t ] [ n ] ) return traj [ : : - 1 ]
Extract a single trajectory from the particle history .
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def compute_trajectories ( self ) : self . B = np . empty ( ( self . T , self . N ) , 'int' ) self . B [ - 1 , : ] = self . A [ - 1 ] for t in reversed ( range ( self . T - 1 ) ) : self . B [ t , : ] = self . A [ t + 1 ] [ self . B [ t + 1 ] ]
Compute the N trajectories that constitute the current genealogy .
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def twofilter_smoothing ( self , t , info , phi , loggamma , linear_cost = False , return_ess = False , modif_forward = None , modif_info = None ) : ti = self . T - 2 - t if t < 0 or t >= self . T - 1 : raise ValueError ( 'two-filter smoothing: t must be in range 0,...,T-2' ) lwinfo = info . hist . wgt [ ti ] . lw - lo...
Two - filter smoothing .
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def multiSMC ( nruns = 10 , nprocs = 0 , out_func = None , ** args ) : def f ( ** args ) : pf = SMC ( ** args ) pf . run ( ) return out_func ( pf ) if out_func is None : out_func = lambda x : x return utils . multiplexer ( f = f , nruns = nruns , nprocs = nprocs , seeding = True , ** args )
Run SMC algorithms in parallel for different combinations of parameters .
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def reset_weights ( self ) : if self . fk . isAPF : lw = ( rs . log_mean_exp ( self . logetat , W = self . W ) - self . logetat [ self . A ] ) self . wgts = rs . Weights ( lw = lw ) else : self . wgts = rs . Weights ( )
Reset weights after a resampling step .
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def log_sum_exp ( v ) : m = v . max ( ) return m + np . log ( np . sum ( np . exp ( v - m ) ) )
Log of the sum of the exp of the arguments .
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def log_sum_exp_ab ( a , b ) : if a > b : return a + np . log ( 1. + np . exp ( b - a ) ) else : return b + np . log ( 1. + np . exp ( a - b ) )
log_sum_exp for two scalars .
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def wmean_and_var ( W , x ) : m = np . average ( x , weights = W , axis = 0 ) m2 = np . average ( x ** 2 , weights = W , axis = 0 ) v = m2 - m ** 2 return { 'mean' : m , 'var' : v }
Component - wise weighted mean and variance .
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def wmean_and_var_str_array ( W , x ) : m = np . empty ( shape = x . shape [ 1 : ] , dtype = x . dtype ) v = np . empty_like ( m ) for p in x . dtype . names : m [ p ] , v [ p ] = wmean_and_var ( W , x [ p ] ) . values ( ) return { 'mean' : m , 'var' : v }
Weighted mean and variance of each component of a structured array .
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def wquantiles ( W , x , alphas = ( 0.25 , 0.50 , 0.75 ) ) : if len ( x . shape ) == 1 : return _wquantiles ( W , x , alphas = alphas ) elif len ( x . shape ) == 2 : return np . array ( [ _wquantiles ( W , x [ : , i ] , alphas = alphas ) for i in range ( x . shape [ 1 ] ) ] )
Quantiles for weighted data .
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def wquantiles_str_array ( W , x , alphas = ( 0.25 , 0.50 , 0 , 75 ) ) : return { p : wquantiles ( W , x [ p ] , alphas ) for p in x . dtype . names }
quantiles for weighted data stored in a structured array .
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def resampling_scheme ( func ) : @ functools . wraps ( func ) def modif_func ( W , M = None ) : M = W . shape [ 0 ] if M is None else M return func ( W , M ) rs_funcs [ func . __name__ ] = modif_func modif_func . __doc__ = rs_doc % func . __name__ . capitalize ( ) return modif_func
Decorator for resampling schemes .
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def inverse_cdf ( su , W ) : j = 0 s = W [ 0 ] M = su . shape [ 0 ] A = np . empty ( M , 'int' ) for n in range ( M ) : while su [ n ] > s : j += 1 s += W [ j ] A [ n ] = j return A
Inverse CDF algorithm for a finite distribution .
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def hilbert_array ( xint ) : N , d = xint . shape h = np . zeros ( N , int64 ) for n in range ( N ) : h [ n ] = Hilbert_to_int ( xint [ n , : ] ) return h
Compute Hilbert indices .
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def mean_sq_jump_dist ( self , discard_frac = 0.1 ) : discard = int ( self . niter * discard_frac ) return msjd ( self . chain . theta [ discard : ] )
Mean squared jumping distance estimated from chain .
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def update ( self , v ) : self . t += 1 g = self . gamma ( ) self . mu = ( 1. - g ) * self . mu + g * v mv = v - self . mu self . Sigma = ( ( 1. - g ) * self . Sigma + g * np . dot ( mv [ : , np . newaxis ] , mv [ np . newaxis , : ] ) ) try : self . L = cholesky ( self . Sigma , lower = True ) except LinAlgError : self...
Adds point v
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def cartesian_lists ( d ) : return [ { k : v for k , v in zip ( d . keys ( ) , args ) } for args in itertools . product ( * d . values ( ) ) ]
turns a dict of lists into a list of dicts that represents the cartesian product of the initial lists
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def cartesian_args ( args , listargs , dictargs ) : ils = { k : [ v , ] for k , v in args . items ( ) } ils . update ( listargs ) ils . update ( { k : v . values ( ) for k , v in dictargs . items ( ) } ) ols = listargs . copy ( ) ols . update ( { k : v . keys ( ) for k , v in dictargs . items ( ) } ) return cartesian_l...
Compute a list of inputs and outputs for a function with kw arguments .
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def worker ( qin , qout , f ) : while not qin . empty ( ) : i , args = qin . get ( ) qout . put ( ( i , f ( ** args ) ) )
Worker for muliprocessing . A worker repeatedly picks a dict of arguments in the queue and computes f for this set of arguments until the input queue is empty .
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def distinct_seeds ( k ) : seeds = [ ] for _ in range ( k ) : while True : s = random . randint ( 2 ** 32 - 1 ) if s not in seeds : break seeds . append ( s ) return seeds
returns k distinct seeds for random number generation
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def multiplexer ( f = None , nruns = 1 , nprocs = 1 , seeding = None , ** args ) : if not callable ( f ) : raise ValueError ( 'multiplexer: function f missing, or not callable' ) if seeding is None : seeding = ( nruns > 1 ) fixedargs , listargs , dictargs = { } , { } , { } listargs [ 'run' ] = list ( range ( nruns ) ) ...
Evaluate a function for different parameters optionally in parallel .
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def simulate ( self , T ) : x = [ ] for t in range ( T ) : law_x = self . PX0 ( ) if t == 0 else self . PX ( t , x [ - 1 ] ) x . append ( law_x . rvs ( size = 1 ) ) y = self . simulate_given_x ( x ) return x , y
Simulate state and observation processes .
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def interpoled_resampling ( W , x ) : N = W . shape [ 0 ] idx = np . argsort ( x ) xs = x [ idx ] ws = W [ idx ] cs = np . cumsum ( avg_n_nplusone ( ws ) ) u = random . rand ( N ) xrs = np . empty ( N ) where = np . searchsorted ( cs , u ) for n in range ( N ) : m = where [ n ] if m == 0 : xrs [ n ] = xs [ 0 ] elif m =...
Resampling based on an interpolated CDF as described in Malik and Pitt .
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def sort_items ( self , items , args = False ) : if self . settings [ 'sort' ] . lower ( ) == 'src' : return def alpha ( i ) : return i . name def permission ( i ) : if args : if i . intent == 'in' : return 'b' if i . intent == 'inout' : return 'c' if i . intent == 'out' : return 'd' if i . intent == '' : return 'e' pe...
Sort the self s contents as contained in the list items as specified in self s meta - data .
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def contents_size ( self ) : count = 0 if hasattr ( self , 'variables' ) : count += 1 if hasattr ( self , 'types' ) : count += 1 if hasattr ( self , 'modules' ) : count += 1 if hasattr ( self , 'submodules' ) : count += 1 if hasattr ( self , 'subroutines' ) : count += 1 if hasattr ( self , 'modprocedures' ) : count += ...
Returns the number of different categories to be shown in the contents side - bar in the HTML documentation .
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def sort ( self ) : if hasattr ( self , 'variables' ) : sort_items ( self , self . variables ) if hasattr ( self , 'modules' ) : sort_items ( self , self . modules ) if hasattr ( self , 'submodules' ) : sort_items ( self , self . submodules ) if hasattr ( self , 'common' ) : sort_items ( self , self . common ) if hasat...
Sorts components of the object .
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def make_links ( self , project ) : self . doc = ford . utils . sub_links ( self . doc , project ) if 'summary' in self . meta : self . meta [ 'summary' ] = ford . utils . sub_links ( self . meta [ 'summary' ] , project ) for item in self . iterator ( 'variables' , 'types' , 'enums' , 'modules' , 'submodules' , 'subrou...
Process intra - site links to documentation of other parts of the program .
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def iterator ( self , * argv ) : for arg in argv : if hasattr ( self , arg ) : for item in getattr ( self , arg ) : yield item
Iterator returning any list of elements via attribute lookup in self
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def get_used_entities ( self , use_specs ) : if len ( use_specs . strip ( ) ) == 0 : return ( self . pub_procs , self . pub_absints , self . pub_types , self . pub_vars ) only = bool ( self . ONLY_RE . match ( use_specs ) ) use_specs = self . ONLY_RE . sub ( '' , use_specs ) ulist = self . SPLIT_RE . split ( use_specs ...
Returns the entities which are imported by a use statement . These are contained in dicts .
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def get_name ( self , item ) : if not isinstance ( item , ford . sourceform . FortranBase ) : raise Exception ( '{} is not of a type derived from FortranBase' . format ( str ( item ) ) ) if item in self . _items : return self . _items [ item ] else : if item . get_dir ( ) not in self . _counts : self . _counts [ item ....
Return the name for this item registered with this NameSelector . If no name has previously been registered then generate a new one .
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def main ( proj_data , proj_docs , md ) : if proj_data [ 'relative' ] : proj_data [ 'project_url' ] = '.' project = ford . fortran_project . Project ( proj_data ) if len ( project . files ) < 1 : print ( "Error: No source files with appropriate extension found in specified directory." ) sys . exit ( 1 ) if proj_data [ ...
Main driver of FORD .
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def convertToFree ( stream , length_limit = True ) : linestack = [ ] for line in stream : convline = FortranLine ( line , length_limit ) if convline . is_regular : if convline . isContinuation and linestack : linestack [ 0 ] . continueLine ( ) for l in linestack : yield str ( l ) linestack = [ ] linestack . append ( co...
Convert stream from fixed source form to free source form .
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def continueLine ( self ) : if not ( self . isLong and self . is_regular ) : self . line_conv = self . line_conv . rstrip ( ) + " &\n" else : temp = self . line_conv [ : 72 ] . rstrip ( ) + " &" self . line_conv = temp . ljust ( 72 ) + self . excess_line
Insert line continuation symbol at end of line .
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def id_mods ( obj , modlist , intrinsic_mods = { } , submodlist = [ ] ) : for i in range ( len ( obj . uses ) ) : for candidate in modlist : if obj . uses [ i ] [ 0 ] . lower ( ) == candidate . name . lower ( ) : obj . uses [ i ] = [ candidate , obj . uses [ i ] [ 1 ] ] break else : if obj . uses [ i ] [ 0 ] . lower ( ...
Match USE statements up with the right modules
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def allfiles ( self ) : for f in self . files : yield f for f in self . extra_files : yield f
Instead of duplicating files it is much more efficient to create the itterator on the fly
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def make_links ( self , base_url = '..' ) : ford . sourceform . set_base_url ( base_url ) for src in self . allfiles : src . make_links ( self )
Substitute intrasite links to documentation for other parts of the program .
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def sub_notes ( docs ) : def substitute ( match ) : ret = "</p><div class=\"alert alert-{}\" role=\"alert\"><h4>{}</h4>" "<p>{}</p></div>" . format ( NOTE_TYPE [ match . group ( 1 ) . lower ( ) ] , match . group ( 1 ) . capitalize ( ) , match . group ( 2 ) ) if len ( match . groups ( ) ) >= 4 and not match . group ( 4 ...
Substitutes the special controls for notes warnings todos and bugs with the corresponding div .
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def paren_split ( sep , string ) : if len ( sep ) != 1 : raise Exception ( "Separation string must be one character long" ) retlist = [ ] level = 0 blevel = 0 left = 0 for i in range ( len ( string ) ) : if string [ i ] == "(" : level += 1 elif string [ i ] == ")" : level -= 1 elif string [ i ] == "[" : blevel += 1 eli...
Splits the string into pieces divided by sep when sep is outside of parentheses .
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def quote_split ( sep , string ) : if len ( sep ) != 1 : raise Exception ( "Separation string must be one character long" ) retlist = [ ] squote = False dquote = False left = 0 i = 0 while i < len ( string ) : if string [ i ] == '"' and not dquote : if not squote : squote = True elif ( i + 1 ) < len ( string ) and stri...
Splits the strings into pieces divided by sep when sep in not inside quotes .
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def split_path ( path ) : def recurse_path ( path , retlist ) : if len ( retlist ) > 100 : fullpath = os . path . join ( * ( [ path , ] + retlist ) ) print ( "Directory '{}' contains too many levels" . format ( fullpath ) ) exit ( 1 ) head , tail = os . path . split ( path ) if len ( tail ) > 0 : retlist . insert ( 0 ,...
Splits the argument into its constituent directories and returns them as a list .
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def sub_macros ( string , base_url ) : macros = { '|url|' : base_url , '|media|' : os . path . join ( base_url , 'media' ) , '|page|' : os . path . join ( base_url , 'page' ) } for key , val in macros . items ( ) : string = string . replace ( key , val ) return string
Replaces macros in documentation with their appropriate values . These macros are used for things like providing URLs .
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def copytree ( src , dst ) : def touch ( path ) : now = time . time ( ) try : os . utime ( path , ( now , now ) ) except os . error : os . makedirs ( os . path . dirname ( path ) ) open ( path , "w" ) . close ( ) os . utime ( path , ( now , now ) ) for root , dirs , files in os . walk ( src ) : relsrcdir = os . path . ...
Replaces shutil . copytree to avoid problems on certain file systems .
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def export_hmaps_csv ( key , dest , sitemesh , array , comment ) : curves = util . compose_arrays ( sitemesh , array ) writers . write_csv ( dest , curves , comment = comment ) return [ dest ]
Export the hazard maps of the given realization into CSV .
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def export_hcurves_by_imt_csv ( key , kind , rlzs_assoc , fname , sitecol , array , oq , checksum ) : nsites = len ( sitecol ) fnames = [ ] for imt , imls in oq . imtls . items ( ) : slc = oq . imtls ( imt ) dest = add_imt ( fname , imt ) lst = [ ( 'lon' , F32 ) , ( 'lat' , F32 ) , ( 'depth' , F32 ) ] for iml in imls :...
Export the curves of the given realization into CSV .
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def export_hcurves_csv ( ekey , dstore ) : oq = dstore [ 'oqparam' ] info = get_info ( dstore ) rlzs_assoc = dstore [ 'csm_info' ] . get_rlzs_assoc ( ) R = len ( rlzs_assoc . realizations ) sitecol = dstore [ 'sitecol' ] sitemesh = get_mesh ( sitecol ) key , kind , fmt = get_kkf ( ekey ) fnames = [ ] checksum = dstore ...
Exports the hazard curves into several . csv files
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def save_disagg_to_csv ( metadata , matrices ) : skip_keys = ( 'Mag' , 'Dist' , 'Lon' , 'Lat' , 'Eps' , 'TRT' ) base_header = ',' . join ( '%s=%s' % ( key , value ) for key , value in metadata . items ( ) if value is not None and key not in skip_keys ) for disag_tup , ( poe , iml , matrix , fname ) in matrices . items ...
Save disaggregation matrices to multiple . csv files .
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def _interp_function ( self , y_ip1 , y_i , t_ip1 , t_i , imt_per ) : return y_i + ( y_ip1 - y_i ) / ( t_ip1 - t_i ) * ( imt_per - t_i )
Generic interpolation function used in equation 19 of 2013 report .
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def _get_SRF_tau ( self , imt_per ) : if imt_per < 1 : srf = 0.87 elif 1 <= imt_per < 5 : srf = self . _interp_function ( 0.58 , 0.87 , 5 , 1 , imt_per ) elif 5 <= imt_per <= 10 : srf = 0.58 else : srf = 1 return srf
Table 6 and equation 19 of 2013 report .
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def _get_SRF_phi ( self , imt_per ) : if imt_per < 0.6 : srf = 0.8 elif 0.6 <= imt_per < 1 : srf = self . _interp_function ( 0.7 , 0.8 , 1 , 0.6 , imt_per ) elif 1 <= imt_per <= 10 : srf = self . _interp_function ( 0.6 , 0.7 , 10 , 1 , imt_per ) else : srf = 1 return srf
Table 7 and equation 19 of 2013 report . NB change in notation 2013 report calls this term sigma but it is referred to here as phi .