index
int64 0
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| package
stringlengths 2
98
⌀ | name
stringlengths 1
76
| docstring
stringlengths 0
281k
⌀ | code
stringlengths 4
8.19k
| signature
stringlengths 2
42.8k
⌀ | embed_func_code
listlengths 768
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720,056
|
ibm_platform_services.user_management_v1
|
get_user_profile
|
Get user profile.
Retrieve a user's profile by the user's IAM ID in your account. You can use the
IAM service token or a user token for authorization. To use this method, the
requesting user or service ID must have at least the viewer, editor, or
administrator role on the User Management service.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str include_activity: (optional) Include activity information of the
user, such as the last authentication timestamp.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `UserProfile` object
|
def get_user_profile(
self,
account_id: str,
iam_id: str,
*,
include_activity: str = None,
**kwargs,
) -> DetailedResponse:
"""
Get user profile.
Retrieve a user's profile by the user's IAM ID in your account. You can use the
IAM service token or a user token for authorization. To use this method, the
requesting user or service ID must have at least the viewer, editor, or
administrator role on the User Management service.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str include_activity: (optional) Include activity information of the
user, such as the last authentication timestamp.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `UserProfile` object
"""
if not account_id:
raise ValueError('account_id must be provided')
if not iam_id:
raise ValueError('iam_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='get_user_profile',
)
headers.update(sdk_headers)
params = {
'include_activity': include_activity,
}
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
headers['Accept'] = 'application/json'
path_param_keys = ['account_id', 'iam_id']
path_param_values = self.encode_path_vars(account_id, iam_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users/{iam_id}'.format(**path_param_dict)
request = self.prepare_request(
method='GET',
url=url,
headers=headers,
params=params,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, iam_id: str, *, include_activity: Optional[str] = None, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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720,057
|
ibm_platform_services.user_management_v1
|
get_user_settings
|
Get user settings.
Retrieve a user's settings by the user's IAM ID. You can use the IAM service token
or a user token for authorization. To use this method, the requesting user or
service ID must have the viewer, editor, or administrator role on the User
Management service. <br/><br/>The user settings have several fields. The
`language` field is the language setting for the user interface display language.
The `notification_language` field is the language setting for phone and email
notifications. The `allowed_ip_addresses` field specifies a list of IP addresses
that the user can log in and perform operations from as described in [Allowing
specific IP addresses for a
user](https://cloud.ibm.com/docs/account?topic=account-ips). For information about
the `self_manage` field, review information about the [user-managed login
setting](https://cloud.ibm.com/docs/account?topic=account-types).
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `UserSettings` object
|
def get_user_settings(
self,
account_id: str,
iam_id: str,
**kwargs,
) -> DetailedResponse:
"""
Get user settings.
Retrieve a user's settings by the user's IAM ID. You can use the IAM service token
or a user token for authorization. To use this method, the requesting user or
service ID must have the viewer, editor, or administrator role on the User
Management service. <br/><br/>The user settings have several fields. The
`language` field is the language setting for the user interface display language.
The `notification_language` field is the language setting for phone and email
notifications. The `allowed_ip_addresses` field specifies a list of IP addresses
that the user can log in and perform operations from as described in [Allowing
specific IP addresses for a
user](https://cloud.ibm.com/docs/account?topic=account-ips). For information about
the `self_manage` field, review information about the [user-managed login
setting](https://cloud.ibm.com/docs/account?topic=account-types).
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `UserSettings` object
"""
if not account_id:
raise ValueError('account_id must be provided')
if not iam_id:
raise ValueError('iam_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='get_user_settings',
)
headers.update(sdk_headers)
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
headers['Accept'] = 'application/json'
path_param_keys = ['account_id', 'iam_id']
path_param_values = self.encode_path_vars(account_id, iam_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users/{iam_id}/settings'.format(**path_param_dict)
request = self.prepare_request(
method='GET',
url=url,
headers=headers,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, iam_id: str, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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720,058
|
ibm_platform_services.user_management_v1
|
invite_users
|
Invite users to an account.
Invite users to the account. You must use a user token for authorization. Service
IDs can't invite users to the account. To use this method, the requesting user
must have the editor or administrator role on the User Management service. For
more information, see the [Inviting
users](https://cloud.ibm.com/docs/account?topic=account-iamuserinv) documentation.
You can specify the user account role and the corresponding IAM policy information
in the request body. <br/><br/>When you invite a user to an account, the user is
initially created in the `PROCESSING` state. After the user is successfully
created, all specified permissions are configured, and the activation email is
sent, the invited user is transitioned to the `PENDING` state. When the invited
user clicks the activation email and creates and confirms their IBM Cloud account,
the user is transitioned to `ACTIVE` state. If the user email is already verified,
no email is generated.
:param str account_id: The account ID of the specified user.
:param List[InviteUser] users: (optional) A list of users to be invited.
:param List[InviteUserIamPolicy] iam_policy: (optional) A list of IAM
policies.
:param List[str] access_groups: (optional) A list of access groups.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `InvitedUserList` object
|
def invite_users(
self,
account_id: str,
*,
users: List['InviteUser'] = None,
iam_policy: List['InviteUserIamPolicy'] = None,
access_groups: List[str] = None,
**kwargs,
) -> DetailedResponse:
"""
Invite users to an account.
Invite users to the account. You must use a user token for authorization. Service
IDs can't invite users to the account. To use this method, the requesting user
must have the editor or administrator role on the User Management service. For
more information, see the [Inviting
users](https://cloud.ibm.com/docs/account?topic=account-iamuserinv) documentation.
You can specify the user account role and the corresponding IAM policy information
in the request body. <br/><br/>When you invite a user to an account, the user is
initially created in the `PROCESSING` state. After the user is successfully
created, all specified permissions are configured, and the activation email is
sent, the invited user is transitioned to the `PENDING` state. When the invited
user clicks the activation email and creates and confirms their IBM Cloud account,
the user is transitioned to `ACTIVE` state. If the user email is already verified,
no email is generated.
:param str account_id: The account ID of the specified user.
:param List[InviteUser] users: (optional) A list of users to be invited.
:param List[InviteUserIamPolicy] iam_policy: (optional) A list of IAM
policies.
:param List[str] access_groups: (optional) A list of access groups.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `InvitedUserList` object
"""
if not account_id:
raise ValueError('account_id must be provided')
if users is not None:
users = [convert_model(x) for x in users]
if iam_policy is not None:
iam_policy = [convert_model(x) for x in iam_policy]
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='invite_users',
)
headers.update(sdk_headers)
data = {
'users': users,
'iam_policy': iam_policy,
'access_groups': access_groups,
}
data = {k: v for (k, v) in data.items() if v is not None}
data = json.dumps(data)
headers['content-type'] = 'application/json'
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
headers['Accept'] = 'application/json'
path_param_keys = ['account_id']
path_param_values = self.encode_path_vars(account_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users'.format(**path_param_dict)
request = self.prepare_request(
method='POST',
url=url,
headers=headers,
data=data,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, *, users: Optional[List[ibm_platform_services.user_management_v1.InviteUser]] = None, iam_policy: Optional[List[ibm_platform_services.user_management_v1.InviteUserIamPolicy]] = None, access_groups: Optional[List[str]] = None, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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] |
720,059
|
ibm_platform_services.user_management_v1
|
list_users
|
List users.
Retrieve users in the account. You can use the IAM service token or a user token
for authorization. To use this method, the requesting user or service ID must have
at least the viewer, editor, or administrator role on the User Management service.
If unrestricted view is enabled, the user can see all users in the same account
without an IAM role. If restricted view is enabled and user has the viewer,
editor, or administrator role on the user management service, the API returns all
users in the account. If unrestricted view is enabled and the user does not have
these roles, the API returns only the current user. Users are returned in a
paginated list with a default limit of 100 users. You can iterate through all
users by following the `next_url` field. Additional substring search fields are
supported to filter the users.
:param str account_id: The account ID of the specified user.
:param int limit: (optional) The number of results to be returned.
:param bool include_settings: (optional) The user settings to be returned.
Set to true to view language, allowed IP address, and authentication
settings.
:param str search: (optional) The desired search results to be returned. To
view the list of users with the additional search filter, use the following
query options: `firstname`, `lastname`, `email`, `state`, `substate`,
`iam_id`, `realm`, and `userId`. HTML URL encoding for the search query and
`:` must be used. For example, search=state%3AINVALID returns a list of
invalid users. Multiple search queries can be combined to obtain `OR`
results using `,` operator (not URL encoded). For example,
search=state%3AINVALID,email%3Amail.test.ibm.com.
:param str start: (optional) An optional token that indicates the beginning
of the page of results to be returned. If omitted, the first page of
results is returned. This value is obtained from the 'next_url' field of
the operation response.
:param str user_id: (optional) Filter users based on their user ID.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `UserList` object
|
def list_users(
self,
account_id: str,
*,
limit: int = None,
include_settings: bool = None,
search: str = None,
start: str = None,
user_id: str = None,
**kwargs,
) -> DetailedResponse:
"""
List users.
Retrieve users in the account. You can use the IAM service token or a user token
for authorization. To use this method, the requesting user or service ID must have
at least the viewer, editor, or administrator role on the User Management service.
If unrestricted view is enabled, the user can see all users in the same account
without an IAM role. If restricted view is enabled and user has the viewer,
editor, or administrator role on the user management service, the API returns all
users in the account. If unrestricted view is enabled and the user does not have
these roles, the API returns only the current user. Users are returned in a
paginated list with a default limit of 100 users. You can iterate through all
users by following the `next_url` field. Additional substring search fields are
supported to filter the users.
:param str account_id: The account ID of the specified user.
:param int limit: (optional) The number of results to be returned.
:param bool include_settings: (optional) The user settings to be returned.
Set to true to view language, allowed IP address, and authentication
settings.
:param str search: (optional) The desired search results to be returned. To
view the list of users with the additional search filter, use the following
query options: `firstname`, `lastname`, `email`, `state`, `substate`,
`iam_id`, `realm`, and `userId`. HTML URL encoding for the search query and
`:` must be used. For example, search=state%3AINVALID returns a list of
invalid users. Multiple search queries can be combined to obtain `OR`
results using `,` operator (not URL encoded). For example,
search=state%3AINVALID,email%3Amail.test.ibm.com.
:param str start: (optional) An optional token that indicates the beginning
of the page of results to be returned. If omitted, the first page of
results is returned. This value is obtained from the 'next_url' field of
the operation response.
:param str user_id: (optional) Filter users based on their user ID.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse with `dict` result representing a `UserList` object
"""
if not account_id:
raise ValueError('account_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='list_users',
)
headers.update(sdk_headers)
params = {
'limit': limit,
'include_settings': include_settings,
'search': search,
'_start': start,
'user_id': user_id,
}
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
headers['Accept'] = 'application/json'
path_param_keys = ['account_id']
path_param_values = self.encode_path_vars(account_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users'.format(**path_param_dict)
request = self.prepare_request(
method='GET',
url=url,
headers=headers,
params=params,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, *, limit: Optional[int] = None, include_settings: Optional[bool] = None, search: Optional[str] = None, start: Optional[str] = None, user_id: Optional[str] = None, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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] |
720,061
|
ibm_platform_services.user_management_v1
|
remove_user
|
Remove user from account.
Remove users from an account by user's IAM ID. You must use a user token for
authorization. Service IDs can't remove users from an account. To use this method,
the requesting user must have the editor or administrator role on the User
Management service. For more information, see the [Removing
users](https://cloud.ibm.com/docs/account?topic=account-remove) documentation.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str include_activity: (optional) Include activity information of the
user, such as the last authentication timestamp.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
|
def remove_user(
self,
account_id: str,
iam_id: str,
*,
include_activity: str = None,
**kwargs,
) -> DetailedResponse:
"""
Remove user from account.
Remove users from an account by user's IAM ID. You must use a user token for
authorization. Service IDs can't remove users from an account. To use this method,
the requesting user must have the editor or administrator role on the User
Management service. For more information, see the [Removing
users](https://cloud.ibm.com/docs/account?topic=account-remove) documentation.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str include_activity: (optional) Include activity information of the
user, such as the last authentication timestamp.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
"""
if not account_id:
raise ValueError('account_id must be provided')
if not iam_id:
raise ValueError('iam_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='remove_user',
)
headers.update(sdk_headers)
params = {
'include_activity': include_activity,
}
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
path_param_keys = ['account_id', 'iam_id']
path_param_values = self.encode_path_vars(account_id, iam_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users/{iam_id}'.format(**path_param_dict)
request = self.prepare_request(
method='DELETE',
url=url,
headers=headers,
params=params,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, iam_id: str, *, include_activity: Optional[str] = None, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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] |
720,069
|
ibm_platform_services.user_management_v1
|
update_user_profile
|
Partially update user profile.
Partially update a user's profile by user's IAM ID. You can use the IAM service
token or a user token for authorization. To use this method, the requesting user
or service ID must have at least the editor or administrator role on the User
Management service. A user or service ID with these roles can change a user's
state between `ACTIVE`, `VPN_ONLY`, or `DISABLED_CLASSIC_INFRASTRUCTURE`, but they
can't change the state to `PROCESSING` or `PENDING` because these are system
states. For other request body fields, a user can update their own profile without
having User Management service permissions.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str firstname: (optional) The first name of the user.
:param str lastname: (optional) The last name of the user.
:param str state: (optional) The state of the user. Possible values are
`PROCESSING`, `PENDING`, `ACTIVE`, `DISABLED_CLASSIC_INFRASTRUCTURE`, and
`VPN_ONLY`.
:param str email: (optional) The email address of the user.
:param str phonenumber: (optional) The phone number of the user.
:param str altphonenumber: (optional) The alternative phone number of the
user.
:param str photo: (optional) A link to a photo of the user.
:param str include_activity: (optional) Include activity information of the
user, such as the last authentication timestamp.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
|
def update_user_profile(
self,
account_id: str,
iam_id: str,
*,
firstname: str = None,
lastname: str = None,
state: str = None,
email: str = None,
phonenumber: str = None,
altphonenumber: str = None,
photo: str = None,
include_activity: str = None,
**kwargs,
) -> DetailedResponse:
"""
Partially update user profile.
Partially update a user's profile by user's IAM ID. You can use the IAM service
token or a user token for authorization. To use this method, the requesting user
or service ID must have at least the editor or administrator role on the User
Management service. A user or service ID with these roles can change a user's
state between `ACTIVE`, `VPN_ONLY`, or `DISABLED_CLASSIC_INFRASTRUCTURE`, but they
can't change the state to `PROCESSING` or `PENDING` because these are system
states. For other request body fields, a user can update their own profile without
having User Management service permissions.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str firstname: (optional) The first name of the user.
:param str lastname: (optional) The last name of the user.
:param str state: (optional) The state of the user. Possible values are
`PROCESSING`, `PENDING`, `ACTIVE`, `DISABLED_CLASSIC_INFRASTRUCTURE`, and
`VPN_ONLY`.
:param str email: (optional) The email address of the user.
:param str phonenumber: (optional) The phone number of the user.
:param str altphonenumber: (optional) The alternative phone number of the
user.
:param str photo: (optional) A link to a photo of the user.
:param str include_activity: (optional) Include activity information of the
user, such as the last authentication timestamp.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
"""
if not account_id:
raise ValueError('account_id must be provided')
if not iam_id:
raise ValueError('iam_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='update_user_profile',
)
headers.update(sdk_headers)
params = {
'include_activity': include_activity,
}
data = {
'firstname': firstname,
'lastname': lastname,
'state': state,
'email': email,
'phonenumber': phonenumber,
'altphonenumber': altphonenumber,
'photo': photo,
}
data = {k: v for (k, v) in data.items() if v is not None}
data = json.dumps(data)
headers['content-type'] = 'application/json'
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
path_param_keys = ['account_id', 'iam_id']
path_param_values = self.encode_path_vars(account_id, iam_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users/{iam_id}'.format(**path_param_dict)
request = self.prepare_request(
method='PATCH',
url=url,
headers=headers,
params=params,
data=data,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, iam_id: str, *, firstname: Optional[str] = None, lastname: Optional[str] = None, state: Optional[str] = None, email: Optional[str] = None, phonenumber: Optional[str] = None, altphonenumber: Optional[str] = None, photo: Optional[str] = None, include_activity: Optional[str] = None, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
[
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] |
720,070
|
ibm_platform_services.user_management_v1
|
update_user_settings
|
Partially update user settings.
Update a user's settings by the user's IAM ID. You can use the IAM service token
or a user token for authorization. To fully use this method, the user or service
ID must have the editor or administrator role on the User Management service.
Without these roles, a user can update only their own `language` or
`notification_language` fields. If `self_manage` is `true`, the user can also
update the `allowed_ip_addresses` field.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str language: (optional) The console UI language. By default, this
field is empty.
:param str notification_language: (optional) The language for email and
phone notifications. By default, this field is empty.
:param str allowed_ip_addresses: (optional) A comma-separated list of IP
addresses.
:param bool self_manage: (optional) Whether user managed login is enabled.
The default value is `false`.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
|
def update_user_settings(
self,
account_id: str,
iam_id: str,
*,
language: str = None,
notification_language: str = None,
allowed_ip_addresses: str = None,
self_manage: bool = None,
**kwargs,
) -> DetailedResponse:
"""
Partially update user settings.
Update a user's settings by the user's IAM ID. You can use the IAM service token
or a user token for authorization. To fully use this method, the user or service
ID must have the editor or administrator role on the User Management service.
Without these roles, a user can update only their own `language` or
`notification_language` fields. If `self_manage` is `true`, the user can also
update the `allowed_ip_addresses` field.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param str language: (optional) The console UI language. By default, this
field is empty.
:param str notification_language: (optional) The language for email and
phone notifications. By default, this field is empty.
:param str allowed_ip_addresses: (optional) A comma-separated list of IP
addresses.
:param bool self_manage: (optional) Whether user managed login is enabled.
The default value is `false`.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
"""
if not account_id:
raise ValueError('account_id must be provided')
if not iam_id:
raise ValueError('iam_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='update_user_settings',
)
headers.update(sdk_headers)
data = {
'language': language,
'notification_language': notification_language,
'allowed_ip_addresses': allowed_ip_addresses,
'self_manage': self_manage,
}
data = {k: v for (k, v) in data.items() if v is not None}
data = json.dumps(data)
headers['content-type'] = 'application/json'
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
path_param_keys = ['account_id', 'iam_id']
path_param_values = self.encode_path_vars(account_id, iam_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v2/accounts/{account_id}/users/{iam_id}/settings'.format(**path_param_dict)
request = self.prepare_request(
method='PATCH',
url=url,
headers=headers,
data=data,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, iam_id: str, *, language: Optional[str] = None, notification_language: Optional[str] = None, allowed_ip_addresses: Optional[str] = None, self_manage: Optional[bool] = None, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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] |
720,071
|
ibm_platform_services.user_management_v1
|
v3_remove_user
|
Remove user from account (Asynchronous).
Remove users from an account by using the user's IAM ID. You must use a user token
for authorization. Service IDs can't remove users from an account. If removing the
user fails it will set the user's state to ERROR_WHILE_DELETING. To use this
method, the requesting user must have the editor or administrator role on the User
Management service. For more information, see the [Removing
users](https://cloud.ibm.com/docs/account?topic=account-remove) documentation.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
|
def v3_remove_user(
self,
account_id: str,
iam_id: str,
**kwargs,
) -> DetailedResponse:
"""
Remove user from account (Asynchronous).
Remove users from an account by using the user's IAM ID. You must use a user token
for authorization. Service IDs can't remove users from an account. If removing the
user fails it will set the user's state to ERROR_WHILE_DELETING. To use this
method, the requesting user must have the editor or administrator role on the User
Management service. For more information, see the [Removing
users](https://cloud.ibm.com/docs/account?topic=account-remove) documentation.
:param str account_id: The account ID of the specified user.
:param str iam_id: The user's IAM ID.
:param dict headers: A `dict` containing the request headers
:return: A `DetailedResponse` containing the result, headers and HTTP status code.
:rtype: DetailedResponse
"""
if not account_id:
raise ValueError('account_id must be provided')
if not iam_id:
raise ValueError('iam_id must be provided')
headers = {}
sdk_headers = get_sdk_headers(
service_name=self.DEFAULT_SERVICE_NAME,
service_version='V1',
operation_id='v3_remove_user',
)
headers.update(sdk_headers)
if 'headers' in kwargs:
headers.update(kwargs.get('headers'))
del kwargs['headers']
path_param_keys = ['account_id', 'iam_id']
path_param_values = self.encode_path_vars(account_id, iam_id)
path_param_dict = dict(zip(path_param_keys, path_param_values))
url = '/v3/accounts/{account_id}/users/{iam_id}'.format(**path_param_dict)
request = self.prepare_request(
method='DELETE',
url=url,
headers=headers,
)
response = self.send(request, **kwargs)
return response
|
(self, account_id: str, iam_id: str, **kwargs) -> ibm_cloud_sdk_core.detailed_response.DetailedResponse
|
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] |
720,078
|
ibm_platform_services.common
|
get_sdk_headers
|
Get the request headers to be sent in requests by the SDK
|
def get_sdk_headers(service_name, service_version, operation_id):
# pylint: disable=unused-argument
"""
Get the request headers to be sent in requests by the SDK
"""
headers = {}
headers[HEADER_NAME_USER_AGENT] = get_user_agent()
return headers
|
(service_name, service_version, operation_id)
|
[
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] |
720,095
|
textwrap3
|
TextWrapper
|
Object for wrapping/filling text. The public interface consists of
the wrap() and fill() methods; the other methods are just there for
subclasses to override in order to tweak the default behaviour.
If you want to completely replace the main wrapping algorithm,
you'll probably have to override _wrap_chunks().
Several instance attributes control various aspects of wrapping:
width (default: 70)
the maximum width of wrapped lines (unless break_long_words
is false)
initial_indent (default: "")
string that will be prepended to the first line of wrapped
output. Counts towards the line's width.
subsequent_indent (default: "")
string that will be prepended to all lines save the first
of wrapped output; also counts towards each line's width.
expand_tabs (default: true)
Expand tabs in input text to spaces before further processing.
Each tab will become 0 .. 'tabsize' spaces, depending on its position
in its line. If false, each tab is treated as a single character.
tabsize (default: 8)
Expand tabs in input text to 0 .. 'tabsize' spaces, unless
'expand_tabs' is false.
replace_whitespace (default: true)
Replace all whitespace characters in the input text by spaces
after tab expansion. Note that if expand_tabs is false and
replace_whitespace is true, every tab will be converted to a
single space!
fix_sentence_endings (default: false)
Ensure that sentence-ending punctuation is always followed
by two spaces. Off by default because the algorithm is
(unavoidably) imperfect.
break_long_words (default: true)
Break words longer than 'width'. If false, those words will not
be broken, and some lines might be longer than 'width'.
break_on_hyphens (default: true)
Allow breaking hyphenated words. If true, wrapping will occur
preferably on whitespaces and right after hyphens part of
compound words.
drop_whitespace (default: true)
Drop leading and trailing whitespace from lines.
max_lines (default: None)
Truncate wrapped lines.
placeholder (default: ' [...]')
Append to the last line of truncated text.
|
class TextWrapper:
"""
Object for wrapping/filling text. The public interface consists of
the wrap() and fill() methods; the other methods are just there for
subclasses to override in order to tweak the default behaviour.
If you want to completely replace the main wrapping algorithm,
you'll probably have to override _wrap_chunks().
Several instance attributes control various aspects of wrapping:
width (default: 70)
the maximum width of wrapped lines (unless break_long_words
is false)
initial_indent (default: "")
string that will be prepended to the first line of wrapped
output. Counts towards the line's width.
subsequent_indent (default: "")
string that will be prepended to all lines save the first
of wrapped output; also counts towards each line's width.
expand_tabs (default: true)
Expand tabs in input text to spaces before further processing.
Each tab will become 0 .. 'tabsize' spaces, depending on its position
in its line. If false, each tab is treated as a single character.
tabsize (default: 8)
Expand tabs in input text to 0 .. 'tabsize' spaces, unless
'expand_tabs' is false.
replace_whitespace (default: true)
Replace all whitespace characters in the input text by spaces
after tab expansion. Note that if expand_tabs is false and
replace_whitespace is true, every tab will be converted to a
single space!
fix_sentence_endings (default: false)
Ensure that sentence-ending punctuation is always followed
by two spaces. Off by default because the algorithm is
(unavoidably) imperfect.
break_long_words (default: true)
Break words longer than 'width'. If false, those words will not
be broken, and some lines might be longer than 'width'.
break_on_hyphens (default: true)
Allow breaking hyphenated words. If true, wrapping will occur
preferably on whitespaces and right after hyphens part of
compound words.
drop_whitespace (default: true)
Drop leading and trailing whitespace from lines.
max_lines (default: None)
Truncate wrapped lines.
placeholder (default: ' [...]')
Append to the last line of truncated text.
"""
unicode_whitespace_trans = {}
uspace = ord(' ')
for x in _whitespace:
unicode_whitespace_trans[ord(x)] = uspace
# This funky little regex is just the trick for splitting
# text up into word-wrappable chunks. E.g.
# "Hello there -- you goof-ball, use the -b option!"
# splits into
# Hello/ /there/ /--/ /you/ /goof-/ball,/ /use/ /the/ /-b/ /option!
# (after stripping out empty strings).
word_punct = r'[\w!"\'&.,?]'
letter = r'[^\d\W]'
whitespace = r'[%s]' % re.escape(_whitespace)
nowhitespace = '[^' + whitespace[1:]
emdash = u'\u2014'
wordsep_re = re.compile(r'''
( # any whitespace
%(ws)s+
| # em-dash between words
(?<=%(wp)s) -{2,} (?=\w)
| # Unicode em-dash between words
(?<=%(wp)s) %(emdash)s (?=\w)
| # word, possibly hyphenated
%(nws)s+? (?:
# hyphenated word
-(?: (?<=%(lt)s{2}-) | (?<=%(lt)s-%(lt)s-))
(?= %(lt)s -? %(lt)s)
| # end of word
(?=%(ws)s|\Z)
| # em-dash
(?<=%(wp)s) (?=-{2,}\w)
| # Unicode em-dash
(?<=%(wp)s) (?=%(emdash)s\w)
)
)''' % {'wp': word_punct, 'lt': letter,
'ws': whitespace, 'nws': nowhitespace,
'emdash': emdash},
re.VERBOSE | re.UNICODE)
del word_punct, letter, nowhitespace, emdash
# NB re.UNICODE flag added for consistent behavior across Python 2 and 3
# Not really needed in Python 3, but without it, Python 2 foolishly does
# not consider letters with diacritical marks (e.g. the very common
# '\N{LATIN SMALL LETTER E WITH ACUTE}') to be "word" characters (`\w`)
# NB Unicode em dash cannot be easily combined with -- case, because the
# -{2,} admits the (slightly degenerate) --- etc. cases, which are
# unique to simulate em dashes
# If \N{EM DASH} finds favor, then direct handling of \N{HYPHEN}
# and \N{NON-BREAKING HYPHEN} make sense as follow-ons
# This less funky little regex just split on recognized spaces. E.g.
# "Hello there -- you goof-ball, use the -b option!"
# splits into
# Hello/ /there/ /--/ /you/ /goof-ball,/ /use/ /the/ /-b/ /option!/
wordsep_simple_re = re.compile(r'(%s+)' % whitespace)
del whitespace
# XXX this is not locale- or charset-aware -- string.lowercase
# is US-ASCII only (and therefore English-only)
sentence_end_re = re.compile(r'[a-z]' # lowercase letter
r'[\.\!\?]' # sentence-ending punct.
r'[\"\']?' # optional end-of-quote
r'\Z') # end of chunk
def __init__(self,
width=70,
initial_indent="",
subsequent_indent="",
expand_tabs=True,
replace_whitespace=True,
fix_sentence_endings=False,
break_long_words=True,
drop_whitespace=True,
break_on_hyphens=True,
tabsize=8,
max_lines=None,
placeholder=' [...]'):
self.width = width
self.initial_indent = initial_indent
self.subsequent_indent = subsequent_indent
self.expand_tabs = expand_tabs
self.replace_whitespace = replace_whitespace
self.fix_sentence_endings = fix_sentence_endings
self.break_long_words = break_long_words
self.drop_whitespace = drop_whitespace
self.break_on_hyphens = break_on_hyphens
self.tabsize = tabsize
self.max_lines = max_lines
self.placeholder = placeholder
# -- Private methods -----------------------------------------------
# (possibly useful for subclasses to override)
def _munge_whitespace(self, text):
"""_munge_whitespace(text : string) -> string
Munge whitespace in text: expand tabs and convert all other
whitespace characters to spaces. Eg. " foo\\tbar\\n\\nbaz"
becomes " foo bar baz".
"""
if self.expand_tabs:
text = text.expandtabs(self.tabsize)
if self.replace_whitespace:
# text = text.translate(self.unicode_whitespace_trans)
# shim for Python 2 str
text = _translate(text, self.unicode_whitespace_trans)
return text
def _split(self, text):
"""_split(text : string) -> [string]
Split the text to wrap into indivisible chunks. Chunks are
not quite the same as words; see _wrap_chunks() for full
details. As an example, the text
Look, goof-ball -- use the -b option!
breaks into the following chunks:
'Look,', ' ', 'goof-', 'ball', ' ', '--', ' ',
'use', ' ', 'the', ' ', '-b', ' ', 'option!'
if break_on_hyphens is True, or in:
'Look,', ' ', 'goof-ball', ' ', '--', ' ',
'use', ' ', 'the', ' ', '-b', ' ', option!'
otherwise.
"""
if self.break_on_hyphens is True:
chunks = self.wordsep_re.split(text)
else:
chunks = self.wordsep_simple_re.split(text)
chunks = [c for c in chunks if c]
return chunks
def _fix_sentence_endings(self, chunks):
"""_fix_sentence_endings(chunks : [string])
Correct for sentence endings buried in 'chunks'. Eg. when the
original text contains "... foo.\\nBar ...", munge_whitespace()
and split() will convert that to [..., "foo.", " ", "Bar", ...]
which has one too few spaces; this method simply changes the one
space to two.
"""
i = 0
patsearch = self.sentence_end_re.search
|
(width=70, initial_indent='', subsequent_indent='', expand_tabs=True, replace_whitespace=True, fix_sentence_endings=False, break_long_words=True, drop_whitespace=True, break_on_hyphens=True, tabsize=8, max_lines=None, placeholder=' [...]')
|
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] |
720,096
|
textwrap3
|
__init__
| null |
def __init__(self,
width=70,
initial_indent="",
subsequent_indent="",
expand_tabs=True,
replace_whitespace=True,
fix_sentence_endings=False,
break_long_words=True,
drop_whitespace=True,
break_on_hyphens=True,
tabsize=8,
max_lines=None,
placeholder=' [...]'):
self.width = width
self.initial_indent = initial_indent
self.subsequent_indent = subsequent_indent
self.expand_tabs = expand_tabs
self.replace_whitespace = replace_whitespace
self.fix_sentence_endings = fix_sentence_endings
self.break_long_words = break_long_words
self.drop_whitespace = drop_whitespace
self.break_on_hyphens = break_on_hyphens
self.tabsize = tabsize
self.max_lines = max_lines
self.placeholder = placeholder
|
(self, width=70, initial_indent='', subsequent_indent='', expand_tabs=True, replace_whitespace=True, fix_sentence_endings=False, break_long_words=True, drop_whitespace=True, break_on_hyphens=True, tabsize=8, max_lines=None, placeholder=' [...]')
|
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] |
720,098
|
textwrap3
|
_handle_long_word
|
_handle_long_word(chunks : [string],
cur_line : [string],
cur_len : int, width : int)
Handle a chunk of text (most likely a word, not whitespace) that
is too long to fit in any line.
|
def _handle_long_word(self, reversed_chunks, cur_line, cur_len, width):
"""_handle_long_word(chunks : [string],
cur_line : [string],
cur_len : int, width : int)
Handle a chunk of text (most likely a word, not whitespace) that
is too long to fit in any line.
"""
# Figure out when indent is larger than the specified width, and make
# sure at least one character is stripped off on every pass
if width < 1:
space_left = 1
else:
space_left = width - cur_len
# If we're allowed to break long words, then do so: put as much
# of the next chunk onto the current line as will fit.
if self.break_long_words:
cur_line.append(reversed_chunks[-1][:space_left])
reversed_chunks[-1] = reversed_chunks[-1][space_left:]
# Otherwise, we have to preserve the long word intact. Only add
# it to the current line if there's nothing already there --
# that minimizes how much we violate the width constraint.
elif not cur_line:
cur_line.append(reversed_chunks.pop())
# If we're not allowed to break long words, and there's already
# text on the current line, do nothing. Next time through the
# main loop of _wrap_chunks(), we'll wind up here again, but
# cur_len will be zero, so the next line will be entirely
# devoted to the long word that we can't handle right now.
|
(self, reversed_chunks, cur_line, cur_len, width)
|
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] |
720,099
|
textwrap3
|
_munge_whitespace
|
_munge_whitespace(text : string) -> string
Munge whitespace in text: expand tabs and convert all other
whitespace characters to spaces. Eg. " foo\tbar\n\nbaz"
becomes " foo bar baz".
|
def _munge_whitespace(self, text):
"""_munge_whitespace(text : string) -> string
Munge whitespace in text: expand tabs and convert all other
whitespace characters to spaces. Eg. " foo\\tbar\\n\\nbaz"
becomes " foo bar baz".
"""
if self.expand_tabs:
text = text.expandtabs(self.tabsize)
if self.replace_whitespace:
# text = text.translate(self.unicode_whitespace_trans)
# shim for Python 2 str
text = _translate(text, self.unicode_whitespace_trans)
return text
|
(self, text)
|
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] |
720,105
|
textwrap3
|
_translate
|
Shim for Python 2 str translate, which uses an archic form of str.translate
that expects a string or buffer based table. But in Python 2,
unicode.translate is compatible with Python 3 model of a dict-based mapping
table, so wash through the unicode type, then back-map to str type.
Could alternatively just shift up to unicode, which is what most strings should
be anyway, but that path is fraught with danger of causing downstream errors.
|
def _translate(s, mapping):
"""
Shim for Python 2 str translate, which uses an archic form of str.translate
that expects a string or buffer based table. But in Python 2,
unicode.translate is compatible with Python 3 model of a dict-based mapping
table, so wash through the unicode type, then back-map to str type.
Could alternatively just shift up to unicode, which is what most strings should
be anyway, but that path is fraught with danger of causing downstream errors.
"""
if _PY2 and isinstance(s, str):
return str(unicode(s).translate(mapping))
else:
return s.translate(mapping) # default path
|
(s, mapping)
|
[
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] |
720,106
|
textwrap3
|
dedent
|
Remove any common leading whitespace from every line in `text`.
This can be used to make triple-quoted strings line up with the left
edge of the display, while still presenting them in the source code
in indented form.
Note that tabs and spaces are both treated as whitespace, but they
are not equal: the lines " hello" and "\thello" are
considered to have no common leading whitespace. (This behaviour is
new in Python 2.5; older versions of this module incorrectly
expanded tabs before searching for common leading whitespace.)
|
def dedent(text):
"""Remove any common leading whitespace from every line in `text`.
This can be used to make triple-quoted strings line up with the left
edge of the display, while still presenting them in the source code
in indented form.
Note that tabs and spaces are both treated as whitespace, but they
are not equal: the lines " hello" and "\\thello" are
considered to have no common leading whitespace. (This behaviour is
new in Python 2.5; older versions of this module incorrectly
expanded tabs before searching for common leading whitespace.)
"""
# Look for the longest leading string of spaces and tabs common to
# all lines.
debug = False
margin = None
text = _whitespace_only_re.sub('', text)
indents = _leading_whitespace_re.findall(text)
for indent in indents:
if margin is None:
margin = indent
# Current line more deeply indented than previous winner:
# no change (previous winner is still on top).
elif indent.startswith(margin):
pass
# Current line consistent with and no deeper than previous winner:
# it's the new winner.
elif margin.startswith(indent):
margin = indent
# Find the largest common whitespace between current line and previous
# winner.
else:
for i, (x, y) in enumerate(zip(margin, indent)):
if x != y:
margin = margin[:i]
break
# sanity check (testing/debugging only)
if 0 and margin: # pragma: no cover
for line in text.split("\n"):
assert not line or line.startswith(margin), \
"line = %r, margin = %r" % (line, margin)
if margin:
text = re.sub(r'(?m)^' + margin, '', text)
return text
|
(text)
|
[
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] |
720,110
|
textwrap3
|
shorten
|
Collapse and truncate the given text to fit in the given width.
The text first has its whitespace collapsed. If it then fits in
the *width*, it is returned as is. Otherwise, as many words
as possible are joined and then the placeholder is appended::
>>> textwrap.shorten("Hello world!", width=12)
'Hello world!'
>>> textwrap.shorten("Hello world!", width=11)
'Hello [...]'
|
def shorten(text, width, **kwargs):
"""Collapse and truncate the given text to fit in the given width.
The text first has its whitespace collapsed. If it then fits in
the *width*, it is returned as is. Otherwise, as many words
as possible are joined and then the placeholder is appended::
>>> textwrap.shorten("Hello world!", width=12)
'Hello world!'
>>> textwrap.shorten("Hello world!", width=11)
'Hello [...]'
"""
w = TextWrapper(width=width, max_lines=1, **kwargs)
return w.fill(' '.join(text.strip().split()))
|
(text, width, **kwargs)
|
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] |
720,114
|
dagster_spark.types
|
SparkOpError
| null |
class SparkOpError(Exception):
pass
| null |
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] |
720,117
|
dagster_spark.utils
|
construct_spark_shell_command
|
Constructs the spark-submit command for a Spark job.
|
def construct_spark_shell_command(
application_jar,
main_class,
master_url=None,
spark_conf=None,
deploy_mode=None,
application_arguments=None,
spark_home=None,
):
"""Constructs the spark-submit command for a Spark job."""
check.opt_str_param(master_url, "master_url")
check.str_param(application_jar, "application_jar")
spark_conf = check.opt_dict_param(spark_conf, "spark_conf")
check.opt_str_param(deploy_mode, "deploy_mode")
check.opt_str_param(application_arguments, "application_arguments")
check.opt_str_param(spark_home, "spark_home")
spark_home = spark_home if spark_home else os.environ.get("SPARK_HOME")
if spark_home is None:
raise SparkOpError(
"No spark home set. You must either pass spark_home in config or "
"set $SPARK_HOME in your environment (got None)."
)
master_url = ["--master", master_url] if master_url else []
deploy_mode = ["--deploy-mode", deploy_mode] if deploy_mode else []
spark_shell_cmd = (
[f"{spark_home}/bin/spark-submit", "--class", main_class]
+ master_url
+ deploy_mode
+ parse_spark_config(spark_conf)
+ [application_jar]
+ [application_arguments]
)
return spark_shell_cmd
|
(application_jar, main_class, master_url=None, spark_conf=None, deploy_mode=None, application_arguments=None, spark_home=None)
|
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] |
720,118
|
dagster_spark.ops
|
create_spark_op
| null |
def create_spark_op(
name, main_class, description=None, required_resource_keys=frozenset(["spark"])
):
check.str_param(name, "name")
check.str_param(main_class, "main_class")
check.opt_str_param(description, "description", "A parameterized Spark job.")
check.set_param(required_resource_keys, "required_resource_keys")
@op(
name=name,
description=description,
config_schema=define_spark_config(),
ins={"start": In(Nothing)},
out=Out(Nothing),
tags={"kind": "spark", "main_class": main_class},
required_resource_keys=required_resource_keys,
)
def spark_op(context):
context.resources.spark.run_spark_job(context.op_config, main_class)
return spark_op
|
(name, main_class, description=None, required_resource_keys=frozenset({'spark'}))
|
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0.009982452727854252
] |
720,119
|
dagster_spark.configs
|
define_spark_config
|
Spark configuration.
See the Spark documentation for reference:
https://spark.apache.org/docs/latest/submitting-applications.html
|
def define_spark_config():
"""Spark configuration.
See the Spark documentation for reference:
https://spark.apache.org/docs/latest/submitting-applications.html
"""
master_url = Field(
StringSource,
description="The master URL for the cluster (e.g. spark://23.195.26.187:7077)",
is_required=True,
)
deploy_mode = Field(
SparkDeployMode,
description="""Whether to deploy your driver on the worker nodes (cluster) or locally as an
external client (client) (default: client). A common deployment strategy is to submit your
application from a gateway machine that is physically co-located with your worker machines
(e.g. Master node in a standalone EC2 cluster). In this setup, client mode is appropriate.
In client mode, the driver is launched directly within the spark-submit process which acts
as a client to the cluster. The input and output of the application is attached to the
console. Thus, this mode is especially suitable for applications that involve the REPL (e.g.
Spark shell).""",
is_required=False,
)
application_jar = Field(
StringSource,
description="""Path to a bundled jar including your application and all
dependencies. The URL must be globally visible inside of your cluster, for
instance, an hdfs:// path or a file:// path that is present on all nodes.
""",
is_required=True,
)
application_arguments = Field(
StringSource,
description="Arguments passed to the main method of your main class, if any",
is_required=False,
)
spark_home = Field(
StringSource,
description=(
"The path to your spark installation. Defaults to $SPARK_HOME at runtime if not"
" provided."
),
is_required=False,
)
return {
"master_url": master_url,
"deploy_mode": deploy_mode,
"application_jar": application_jar,
"spark_conf": spark_config(),
"spark_home": spark_home,
"application_arguments": application_arguments,
}
|
()
|
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] |
720,125
|
pansi
|
ANSI
| null |
class ANSI(Mapping, object):
def __init__(self, **codes):
self.__codes = dict(codes)
def __getitem__(self, key):
return self.__codes[key]
def __len__(self):
return len(self.__codes) # pragma: no cover
def __iter__(self):
return iter(self.__codes) # pragma: no cover
def __dir__(self):
return list(self.__codes) # pragma: no cover
def __getattr__(self, name):
try:
return self.__codes[name]
except KeyError:
raise AttributeError(name)
|
(**codes)
|
[
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720,127
|
pansi
|
__dir__
| null |
def __dir__(self):
return list(self.__codes) # pragma: no cover
|
(self)
|
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] |
720,129
|
pansi
|
__getattr__
| null |
def __getattr__(self, name):
try:
return self.__codes[name]
except KeyError:
raise AttributeError(name)
|
(self, name)
|
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720,130
|
pansi
|
__getitem__
| null |
def __getitem__(self, key):
return self.__codes[key]
|
(self, key)
|
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] |
720,131
|
pansi
|
__init__
| null |
def __init__(self, **codes):
self.__codes = dict(codes)
|
(self, **codes)
|
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720,132
|
pansi
|
__iter__
| null |
def __iter__(self):
return iter(self.__codes) # pragma: no cover
|
(self)
|
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720,133
|
pansi
|
__len__
| null |
def __len__(self):
return len(self.__codes) # pragma: no cover
|
(self)
|
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] |
720,148
|
pansi
|
RGB
| null |
class RGB(object):
def __init__(self, bg=False):
if bg:
self.__template = "\x1b[48;2;%s;%s;%sm"
else:
self.__template = "\x1b[38;2;%s;%s;%sm"
def __getitem__(self, code):
if len(code) == 4 and code[0] == "#":
# rgb[#XXX]
r = int(code[1], 16) * 17
g = int(code[2], 16) * 17
b = int(code[3], 16) * 17
elif len(code) == 7 and code[0] == "#":
# rgb[#XXXXXX]
r = int(code[1:3], 16)
g = int(code[3:5], 16)
b = int(code[5:7], 16)
else:
raise ValueError("Unknown hex code %r" % code)
return self.__template % (r, g, b)
|
(bg=False)
|
[
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0.0072197020053863525,
0.04420147463679314,
0.03519604727625847,
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] |
720,149
|
pansi
|
__getitem__
| null |
def __getitem__(self, code):
if len(code) == 4 and code[0] == "#":
# rgb[#XXX]
r = int(code[1], 16) * 17
g = int(code[2], 16) * 17
b = int(code[3], 16) * 17
elif len(code) == 7 and code[0] == "#":
# rgb[#XXXXXX]
r = int(code[1:3], 16)
g = int(code[3:5], 16)
b = int(code[5:7], 16)
else:
raise ValueError("Unknown hex code %r" % code)
return self.__template % (r, g, b)
|
(self, code)
|
[
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] |
720,150
|
pansi
|
__init__
| null |
def __init__(self, bg=False):
if bg:
self.__template = "\x1b[48;2;%s;%s;%sm"
else:
self.__template = "\x1b[38;2;%s;%s;%sm"
|
(self, bg=False)
|
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] |
720,151
|
poetrip.pipfile
|
PipFile
| null |
class PipFile:
_SOURCE_DEFAULT: Dict[str, str] = {
"url": "https://pypi.org/simple",
"verify_ssl": True,
"name": "pypi"
}
def __init__(
self,
source: dict = None,
requires: dict = None,
packages: dict = None,
dev_packages: dict = None
):
self._source: dict = source or self._SOURCE_DEFAULT
self._requires: dict = requires or {}
self._packages: dict = packages or {}
self._dev_packages: dict = dev_packages or {}
@property
def attributes(self) -> Dict[str, Any]:
return {
'source': [self._source],
'requires': self._requires,
'packages': self._packages,
'dev-packages': self._dev_packages
}
def to_file(self, filename: str = 'Pipfile') -> None:
"""Create a Pipfile on disk."""
with open(filename, 'w') as file:
toml.dump(self.attributes, file)
|
(source: dict = None, requires: dict = None, packages: dict = None, dev_packages: dict = None)
|
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] |
720,152
|
poetrip.pipfile
|
__init__
| null |
def __init__(
self,
source: dict = None,
requires: dict = None,
packages: dict = None,
dev_packages: dict = None
):
self._source: dict = source or self._SOURCE_DEFAULT
self._requires: dict = requires or {}
self._packages: dict = packages or {}
self._dev_packages: dict = dev_packages or {}
|
(self, source: Optional[dict] = None, requires: Optional[dict] = None, packages: Optional[dict] = None, dev_packages: Optional[dict] = None)
|
[
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] |
720,153
|
poetrip.pipfile
|
to_file
|
Create a Pipfile on disk.
|
def to_file(self, filename: str = 'Pipfile') -> None:
"""Create a Pipfile on disk."""
with open(filename, 'w') as file:
toml.dump(self.attributes, file)
|
(self, filename: str = 'Pipfile') -> NoneType
|
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] |
720,154
|
poetrip.pyproject
|
PyProject
| null |
class PyProject:
def __init__(
self,
infos: dict = None,
dependencies: dict = None,
dev_dependencies: dict = None
):
self._infos = infos or {}
self._dependencies = dependencies or {}
self._dev_dependencies = dev_dependencies or {}
@classmethod
def from_file(cls, filename: str = 'pyproject.toml') -> 'PyProject':
"""Load a PyProject file from a filename."""
toml_content = dict(toml.load(filename))
poetry_attributes: dict = toml_content['tool']['poetry']
return cls(
dependencies=poetry_attributes.pop('dependencies'),
dev_dependencies=poetry_attributes.pop('dev-dependencies'),
infos=poetry_attributes
)
@property
def attributes(self) -> Dict[str, Any]:
return {'tool': {'poetry': {
**self._infos,
'dependencies': self._dependencies,
'dev-dependencies': self._dev_dependencies
}}}
def _get_requires(self) -> dict:
python_version: str = self._dependencies.pop('python')
return {'python-version': python_version}
def to_pipfile(self) -> 'PipFile':
return PipFile(
requires=self._get_requires(),
packages=self._dependencies,
dev_packages=self._dev_dependencies
)
|
(infos: dict = None, dependencies: dict = None, dev_dependencies: dict = None)
|
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] |
720,155
|
poetrip.pyproject
|
__init__
| null |
def __init__(
self,
infos: dict = None,
dependencies: dict = None,
dev_dependencies: dict = None
):
self._infos = infos or {}
self._dependencies = dependencies or {}
self._dev_dependencies = dev_dependencies or {}
|
(self, infos: Optional[dict] = None, dependencies: Optional[dict] = None, dev_dependencies: Optional[dict] = None)
|
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] |
720,156
|
poetrip.pyproject
|
_get_requires
| null |
def _get_requires(self) -> dict:
python_version: str = self._dependencies.pop('python')
return {'python-version': python_version}
|
(self) -> dict
|
[
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720,157
|
poetrip.pyproject
|
to_pipfile
| null |
def to_pipfile(self) -> 'PipFile':
return PipFile(
requires=self._get_requires(),
packages=self._dependencies,
dev_packages=self._dev_dependencies
)
|
(self) -> poetrip.pipfile.PipFile
|
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720,161
|
sphinx_rtd_theme
|
config_initiated
| null |
def config_initiated(app, config):
theme_options = config.html_theme_options or {}
if theme_options.get('canonical_url'):
logger.warning(
_('The canonical_url option is deprecated, use the html_baseurl option from Sphinx instead.')
)
|
(app, config)
|
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720,162
|
sphinx_rtd_theme
|
extend_html_context
| null |
def extend_html_context(app, pagename, templatename, context, doctree):
# Add ``sphinx_version_info`` tuple for use in Jinja templates
context['sphinx_version_info'] = sphinx_version
|
(app, pagename, templatename, context, doctree)
|
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] |
720,164
|
sphinx_rtd_theme
|
get_html_theme_path
|
Return list of HTML theme paths.
|
def get_html_theme_path():
"""Return list of HTML theme paths."""
cur_dir = path.abspath(path.dirname(path.dirname(__file__)))
return cur_dir
|
()
|
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] |
720,166
|
sphinx_rtd_theme
|
setup
| null |
def setup(app):
if python_version[0] < 3:
logger.error("Python 2 is not supported with sphinx_rtd_theme, update to Python 3.")
app.require_sphinx('5.0')
if app.config.html4_writer:
logger.error("'html4_writer' is not supported with sphinx_rtd_theme.")
# Since Sphinx 6, jquery isn't bundled anymore and we need to ensure that
# the sphinxcontrib-jquery extension is enabled.
# See: https://dev.readthedocs.io/en/latest/design/sphinx-jquery.html
if sphinx_version >= (6, 0, 0):
# Documentation of Sphinx guarantees that an extension is added and
# enabled at most once.
# See: https://www.sphinx-doc.org/en/master/extdev/appapi.html#sphinx.application.Sphinx.setup_extension
app.setup_extension("sphinxcontrib.jquery")
# However, we need to call the extension's callback since setup_extension doesn't do it
# See: https://github.com/sphinx-contrib/jquery/issues/23
from sphinxcontrib.jquery import add_js_files as jquery_add_js_files
jquery_add_js_files(app, app.config)
# Register the theme that can be referenced without adding a theme path
app.add_html_theme('sphinx_rtd_theme', path.abspath(path.dirname(__file__)))
# Add Sphinx message catalog for newer versions of Sphinx
# See http://www.sphinx-doc.org/en/master/extdev/appapi.html#sphinx.application.Sphinx.add_message_catalog
rtd_locale_path = path.join(path.abspath(path.dirname(__file__)), 'locale')
app.add_message_catalog('sphinx', rtd_locale_path)
app.connect('config-inited', config_initiated)
# sphinx emits the permalink icon for headers, so choose one more in keeping with our theme
app.config.html_permalinks_icon = "\uf0c1"
# Extend the default context when rendering the templates.
app.connect("html-page-context", extend_html_context)
return {'parallel_read_safe': True, 'parallel_write_safe': True}
|
(app)
|
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] |
720,171
|
sqlparse
|
format
|
Format *sql* according to *options*.
Available options are documented in :ref:`formatting`.
In addition to the formatting options this function accepts the
keyword "encoding" which determines the encoding of the statement.
:returns: The formatted SQL statement as string.
|
def format(sql, encoding=None, **options):
"""Format *sql* according to *options*.
Available options are documented in :ref:`formatting`.
In addition to the formatting options this function accepts the
keyword "encoding" which determines the encoding of the statement.
:returns: The formatted SQL statement as string.
"""
stack = engine.FilterStack()
options = formatter.validate_options(options)
stack = formatter.build_filter_stack(stack, options)
stack.postprocess.append(filters.SerializerUnicode())
return ''.join(stack.run(sql, encoding))
|
(sql, encoding=None, **options)
|
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] |
720,175
|
sqlparse
|
parse
|
Parse sql and return a list of statements.
:param sql: A string containing one or more SQL statements.
:param encoding: The encoding of the statement (optional).
:returns: A tuple of :class:`~sqlparse.sql.Statement` instances.
|
def parse(sql, encoding=None):
"""Parse sql and return a list of statements.
:param sql: A string containing one or more SQL statements.
:param encoding: The encoding of the statement (optional).
:returns: A tuple of :class:`~sqlparse.sql.Statement` instances.
"""
return tuple(parsestream(sql, encoding))
|
(sql, encoding=None)
|
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] |
720,176
|
sqlparse
|
parsestream
|
Parses sql statements from file-like object.
:param stream: A file-like object.
:param encoding: The encoding of the stream contents (optional).
:returns: A generator of :class:`~sqlparse.sql.Statement` instances.
|
def parsestream(stream, encoding=None):
"""Parses sql statements from file-like object.
:param stream: A file-like object.
:param encoding: The encoding of the stream contents (optional).
:returns: A generator of :class:`~sqlparse.sql.Statement` instances.
"""
stack = engine.FilterStack()
stack.enable_grouping()
return stack.run(stream, encoding)
|
(stream, encoding=None)
|
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] |
720,177
|
sqlparse
|
split
|
Split *sql* into single statements.
:param sql: A string containing one or more SQL statements.
:param encoding: The encoding of the statement (optional).
:param strip_semicolon: If True, remove trainling semicolons
(default: False).
:returns: A list of strings.
|
def split(sql, encoding=None, strip_semicolon=False):
"""Split *sql* into single statements.
:param sql: A string containing one or more SQL statements.
:param encoding: The encoding of the statement (optional).
:param strip_semicolon: If True, remove trainling semicolons
(default: False).
:returns: A list of strings.
"""
stack = engine.FilterStack(strip_semicolon=strip_semicolon)
return [str(stmt).strip() for stmt in stack.run(sql, encoding)]
|
(sql, encoding=None, strip_semicolon=False)
|
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] |
720,181
|
mldesigner._get_io_context
|
IOContext
|
Component IO context, includes outputs information
and support operations on them (e.g. mark early available output ready).
You can use `get_io_context` to get this during runtime.
|
class IOContext:
"""Component IO context, includes outputs information
and support operations on them (e.g. mark early available output ready).
You can use `get_io_context` to get this during runtime.
"""
def __init__(self):
self._outputs = OutputContext()
@property
def outputs(self) -> OutputContext:
return self._outputs
|
()
|
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] |
720,182
|
mldesigner._get_io_context
|
__init__
| null |
def __init__(self):
self._outputs = OutputContext()
|
(self)
|
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] |
720,183
|
mldesigner._input_output
|
Input
|
Define an input of a component.
Default to be a uri_folder Input.
:param type: The type of the data input. Possible values include:
'uri_folder', 'uri_file', 'mltable', 'mlflow_model', 'custom_model',
'integer', 'number', 'string', 'boolean'
:type type: str
:param path: The path to which the input is pointing. Could be local data, cloud data, a registered name, etc.
:type path: str
:param mode: The mode of the data input. Possible values are:
'ro_mount': Read-only mount the data,
'download': Download the data to the compute target,
'direct': Pass in the URI as a string
:type mode: str
:param min: The min value -- if a smaller value is passed to a job, the job execution will fail
:type min: Union[integer, float]
:param max: The max value -- if a larger value is passed to a job, the job execution will fail
:type max: Union[integer, float]
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
|
class Input(_IOBase):
"""Define an input of a component.
Default to be a uri_folder Input.
:param type: The type of the data input. Possible values include:
'uri_folder', 'uri_file', 'mltable', 'mlflow_model', 'custom_model',
'integer', 'number', 'string', 'boolean'
:type type: str
:param path: The path to which the input is pointing. Could be local data, cloud data, a registered name, etc.
:type path: str
:param mode: The mode of the data input. Possible values are:
'ro_mount': Read-only mount the data,
'download': Download the data to the compute target,
'direct': Pass in the URI as a string
:type mode: str
:param min: The min value -- if a smaller value is passed to a job, the job execution will fail
:type min: Union[integer, float]
:param max: The max value -- if a larger value is passed to a job, the job execution will fail
:type max: Union[integer, float]
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
"""
_EMPTY = Parameter.empty
_IO_KEYS = ["path", "type", "mode", "description", "min", "max", "enum", "optional", "default"]
@overload
def __init__(
self,
*,
type: Literal[
"uri_folder",
"uri_file",
"mltable",
"mlflow_model",
"custom_model",
"integer",
"number",
"string",
"boolean",
] = "uri_folder",
path: str = None,
mode: str = None,
optional: bool = None,
description: str = None,
**kwargs,
):
"""Initialize an input of a component.
:param path: The path to which the input is pointing. Could be local data, cloud data, a registered name, etc.
:type path: str
:param type: The type of the data input. Possible values include:
'uri_folder', 'uri_file', 'mltable', 'mlflow_model', 'custom_model', and user-defined types.
:type type: str
:param mode: The mode of the data input. Possible values are:
'ro_mount': Read-only mount the data,
'download': Download the data to the compute target,
'direct': Pass in the URI as a string
:type mode: str
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
"""
@overload
def __init__(
self,
*,
type: Literal["number"] = "number",
min: float = None,
max: float = None,
optional: bool = None,
description: str = None,
**kwargs,
):
"""Initialize a number input
:param type: The type of the data input. Can only be set to "number".
:type type: str
:param min: The min value -- if a smaller value is passed to a job, the job execution will fail
:type min: float
:param max: The max value -- if a larger value is passed to a job, the job execution will fail
:type max: float
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
"""
@overload
def __init__(
self,
*,
type: Literal["integer"] = "integer",
min: int = None,
max: int = None,
optional: bool = None,
description: str = None,
**kwargs,
):
"""Initialize an integer input
:param type: The type of the data input. Can only be set to "integer".
:type type: str
:param min: The min value -- if a smaller value is passed to a job, the job execution will fail
:type min: integer
:param max: The max value -- if a larger value is passed to a job, the job execution will fail
:type max: integer
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
"""
@overload
def __init__(
self,
*,
type: Literal["string"] = "string",
optional: bool = None,
description: str = None,
**kwargs,
):
"""Initialize a string input.
:param type: The type of the data input. Can only be set to "string".
:type type: str
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
"""
@overload
def __init__(
self,
*,
type: Literal["boolean"] = "boolean",
optional: bool = None,
description: str = None,
**kwargs,
):
"""Initialize a bool input.
:param type: The type of the data input. Can only be set to "boolean".
:type type: str
:param optional: Determine if this input is optional
:type optional: bool
:param description: Description of the input
:type description: str
"""
def __init__(
self,
*,
type: str = "uri_folder",
path: str = None,
mode: str = None,
min: Union[int, float] = None,
max: Union[int, float] = None,
enum=None,
optional: bool = None,
description: str = None,
**kwargs,
):
# As an annotation, it is not allowed to initialize the _port_name.
# The _port_name will be updated by the annotated variable name.
self._is_primitive_type = type in IoConstants.PRIMITIVE_STR_2_TYPE
self.path = path
self.mode = None if self._is_primitive_type else mode
self.min = min
self.max = max
self.enum = enum
self.optional = optional
self.default = kwargs.pop("default", None)
super().__init__(port_name=None, type=type, description=description, **kwargs)
# normalize properties like ["default", "min", "max", "optional"]
self._normalize_self_properties()
def _to_io_entity_args_dict(self):
"""Convert the Input object to a kwargs dict for azure.ai.ml.entity.Input."""
keys = self._IO_KEYS
result = {key: getattr(self, key, None) for key in keys}
result = {**self._kwargs, **result}
return _remove_empty_values(result)
@classmethod
def _get_input_by_type(cls, t: type, optional=None):
if t in IoConstants.PRIMITIVE_TYPE_2_STR:
return cls(type=IoConstants.PRIMITIVE_TYPE_2_STR[t], optional=optional)
return None
@classmethod
def _get_default_unknown_input(cls, optional=None):
# Set type as None here to avoid schema validation failed
return cls(type=None, optional=optional)
def _normalize_self_properties(self):
# parse value from string to it's original type. eg: "false" -> False
if self.type in IoConstants.PARAM_PARSERS:
for key in ["default", "min", "max"]:
if getattr(self, key) is not None:
origin_value = getattr(self, key)
new_value = IoConstants.PARAM_PARSERS[self.type](origin_value)
setattr(self, key, new_value)
self.optional = IoConstants.PARAM_PARSERS["boolean"](getattr(self, "optional", "false"))
self.optional = True if self.optional is True else None
|
(*, type: str = 'uri_folder', path: str = None, mode: str = None, min: Union[int, float] = None, max: Union[int, float] = None, enum=None, optional: bool = None, description: str = None, **kwargs)
|
[
0.04673798754811287,
-0.059691302478313446,
-0.0373828150331974,
-0.018606187775731087,
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] |
720,184
|
mldesigner._input_output
|
__init__
| null |
def __init__(
self,
*,
type: str = "uri_folder",
path: str = None,
mode: str = None,
min: Union[int, float] = None,
max: Union[int, float] = None,
enum=None,
optional: bool = None,
description: str = None,
**kwargs,
):
# As an annotation, it is not allowed to initialize the _port_name.
# The _port_name will be updated by the annotated variable name.
self._is_primitive_type = type in IoConstants.PRIMITIVE_STR_2_TYPE
self.path = path
self.mode = None if self._is_primitive_type else mode
self.min = min
self.max = max
self.enum = enum
self.optional = optional
self.default = kwargs.pop("default", None)
super().__init__(port_name=None, type=type, description=description, **kwargs)
# normalize properties like ["default", "min", "max", "optional"]
self._normalize_self_properties()
|
(self, *, type: str = 'uri_folder', path: Optional[str] = None, mode: Optional[str] = None, min: Union[int, float, NoneType] = None, max: Union[int, float, NoneType] = None, enum=None, optional: Optional[bool] = None, description: Optional[str] = None, **kwargs)
|
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] |
720,185
|
mldesigner._input_output
|
_normalize_self_properties
| null |
def _normalize_self_properties(self):
# parse value from string to it's original type. eg: "false" -> False
if self.type in IoConstants.PARAM_PARSERS:
for key in ["default", "min", "max"]:
if getattr(self, key) is not None:
origin_value = getattr(self, key)
new_value = IoConstants.PARAM_PARSERS[self.type](origin_value)
setattr(self, key, new_value)
self.optional = IoConstants.PARAM_PARSERS["boolean"](getattr(self, "optional", "false"))
self.optional = True if self.optional is True else None
|
(self)
|
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] |
720,186
|
mldesigner._input_output
|
_to_io_entity_args_dict
|
Convert the Input object to a kwargs dict for azure.ai.ml.entity.Input.
|
def _to_io_entity_args_dict(self):
"""Convert the Input object to a kwargs dict for azure.ai.ml.entity.Input."""
keys = self._IO_KEYS
result = {key: getattr(self, key, None) for key in keys}
result = {**self._kwargs, **result}
return _remove_empty_values(result)
|
(self)
|
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] |
720,187
|
mldesigner._input_output
|
Meta
|
This is the meta data of Inputs/Outputs.
|
class Meta(object):
"""This is the meta data of Inputs/Outputs."""
def __init__(
self,
type=None,
description=None,
min=None,
max=None,
**kwargs,
):
self.type = type
self.description = description
self._min = min
self._max = max
self._default = kwargs.pop("default", None)
self._kwargs = kwargs
def _to_io_entity_args_dict(self):
"""Convert the object to a kwargs dict for azure.ai.ml.entity.Output."""
keys = set(Output._IO_KEYS + Input._IO_KEYS)
result = {key: getattr(self, key, None) for key in keys}
result.update(self._kwargs)
if IoConstants.PRIMITIVE_TYPE_2_STR.get(self.type) is not None:
result["type"] = IoConstants.PRIMITIVE_TYPE_2_STR.get(self.type)
return _remove_empty_values(result)
@property
def max(self) -> Optional[Union[int, float]]:
"""Return the maximum value of the parameter for a numeric parameter."""
return self._max
@property
def min(self) -> Optional[Union[int, float]]:
"""Return the minimum value of the parameter for a numeric parameter."""
return self._min
@property
def default(self):
"""Return the default value of the parameter."""
return self._default
|
(type=None, description=None, min=None, max=None, **kwargs)
|
[
0.007816995494067669,
-0.06023630127310753,
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] |
720,188
|
mldesigner._input_output
|
__init__
| null |
def __init__(
self,
type=None,
description=None,
min=None,
max=None,
**kwargs,
):
self.type = type
self.description = description
self._min = min
self._max = max
self._default = kwargs.pop("default", None)
self._kwargs = kwargs
|
(self, type=None, description=None, min=None, max=None, **kwargs)
|
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] |
720,189
|
mldesigner._input_output
|
_to_io_entity_args_dict
|
Convert the object to a kwargs dict for azure.ai.ml.entity.Output.
|
def _to_io_entity_args_dict(self):
"""Convert the object to a kwargs dict for azure.ai.ml.entity.Output."""
keys = set(Output._IO_KEYS + Input._IO_KEYS)
result = {key: getattr(self, key, None) for key in keys}
result.update(self._kwargs)
if IoConstants.PRIMITIVE_TYPE_2_STR.get(self.type) is not None:
result["type"] = IoConstants.PRIMITIVE_TYPE_2_STR.get(self.type)
return _remove_empty_values(result)
|
(self)
|
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] |
720,190
|
mldesigner._input_output
|
Output
|
Define an output of a component.
:param type: The type of the data output. Possible values include:
'uri_folder', 'uri_file', 'mltable', 'mlflow_model', 'custom_model', and user-defined types.
:type type: str
:param path: The path to which the output is pointing. Needs to point to a cloud path.
:type path: str
:param mode: The mode of the data output. Possible values are:
'rw_mount': Read-write mount the data,
'upload': Upload the data from the compute target,
'direct': Pass in the URI as a string
:type mode: str
:param description: Description of the output
:type description: str
|
class Output(_IOBase):
"""Define an output of a component.
:param type: The type of the data output. Possible values include:
'uri_folder', 'uri_file', 'mltable', 'mlflow_model', 'custom_model', and user-defined types.
:type type: str
:param path: The path to which the output is pointing. Needs to point to a cloud path.
:type path: str
:param mode: The mode of the data output. Possible values are:
'rw_mount': Read-write mount the data,
'upload': Upload the data from the compute target,
'direct': Pass in the URI as a string
:type mode: str
:param description: Description of the output
:type description: str
"""
_IO_KEYS = ["path", "type", "mode", "description", "early_available"]
@overload
def __init__(
self,
*,
type: Literal[
"uri_folder",
"uri_file",
"mltable",
"mlflow_model",
"custom_model",
"integer",
"number",
"string",
"boolean",
] = "uri_folder",
path=None,
mode=None,
description=None,
early_available=None,
):
"""Define an output of a component.
:param path: The path to which the output is pointing. Needs to point to a cloud path.
:type path: str
:param type: The type of the data output. Possible values include:
'uri_folder', 'uri_file', 'mltable', 'mlflow_model', 'custom_model', and user-defined types.
:type type: str
:param mode: The mode of the data output. Possible values are:
'rw_mount': Read-write mount the data,
'upload': Upload the data from the compute target,
'direct': Pass in the URI as a string
:type mode: str
:param description: Description of the output
:type description: str
:param early_available: Determine the Output is early available or not.
:type early_available: bool
"""
def __init__(
self,
*,
type: str = "uri_folder",
path=None,
mode=None,
description=None,
early_available=None,
**kwargs,
):
# As an annotation, it is not allowed to initialize the _port_name.
# The _port_name will be updated by the annotated variable name.
self.path = path
self.mode = mode
self.early_available = early_available
super().__init__(port_name=None, type=type, description=description, **kwargs)
self._is_primitive_type = self.type in IoConstants.PRIMITIVE_STR_2_TYPE
# early available output value and ready flag
self._value = None
self._ready = None
def _to_io_entity_args_dict(self):
"""Convert the Output object to a kwargs dict for azure.ai.ml.entity.Output."""
keys = self._IO_KEYS
result = {key: getattr(self, key) for key in keys}
result.update(self._kwargs)
return _remove_empty_values(result)
def ready(self) -> None:
"""Mark early available output ready."""
execute_logger = _LoggerFactory.get_logger("execute", target_stdout=True)
# validate
if self._ready is True:
execute_logger.warning(
"Output '%s' has already been marked as ready, ignore current operation.", self._port_name
)
return
if self._value is None:
error_message = f"Early available output {self._port_name!r} is not ready yet, please assign value for it."
raise UserErrorException(error_message)
# validate AzureML limits (https://aka.ms/azure-machine-learning-limits),
# length of property key (100 characters) and length of property value (1000 characters).
# note that we have prefix (azureml.pipeline.control.) in key, so there are 75 characters left.
if len(self._port_name) > 75:
error_message = (
f"Early available output {self._port_name!r} port name is too long, the limit is 75 characters."
)
raise UserErrorException(error_message)
if isinstance(self._value, str) and len(self._value) > 1000:
error_message = (
f"Early available output {self._port_name!r} content is too long, the limit is 1000 characters. "
f"Got {len(self._value)} characters, please control the size."
)
raise UserErrorException(error_message)
# write content to uri_file
from mldesigner._component_executor import _parsed_args
# if component is executed without mldesigner, cannot know where is the target file
if _parsed_args is not None:
execute_logger.info("Write early available output content '%s' to file", self._value)
Path(_parsed_args[self._port_name]).write_text(str(self._value))
# write content to RH
early_available_control_output_key = f"azureml.pipeline.control.{self._port_name}"
_write_properties_to_run_history(
properties={early_available_control_output_key: self._value},
operation_name=RunHistoryOperations.MARK_OUTPUT_READY,
)
self._ready = True
|
(*, type: str = 'uri_folder', path=None, mode=None, description=None, early_available=None, **kwargs)
|
[
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0.0054641966708004475,
0.016748841851949692,
0.006864115130156279,
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0.016257114708423615,
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0.09401027858257294,
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] |
720,191
|
mldesigner._input_output
|
__init__
| null |
def __init__(
self,
*,
type: str = "uri_folder",
path=None,
mode=None,
description=None,
early_available=None,
**kwargs,
):
# As an annotation, it is not allowed to initialize the _port_name.
# The _port_name will be updated by the annotated variable name.
self.path = path
self.mode = mode
self.early_available = early_available
super().__init__(port_name=None, type=type, description=description, **kwargs)
self._is_primitive_type = self.type in IoConstants.PRIMITIVE_STR_2_TYPE
# early available output value and ready flag
self._value = None
self._ready = None
|
(self, *, type: str = 'uri_folder', path=None, mode=None, description=None, early_available=None, **kwargs)
|
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] |
720,192
|
mldesigner._input_output
|
_to_io_entity_args_dict
|
Convert the Output object to a kwargs dict for azure.ai.ml.entity.Output.
|
def _to_io_entity_args_dict(self):
"""Convert the Output object to a kwargs dict for azure.ai.ml.entity.Output."""
keys = self._IO_KEYS
result = {key: getattr(self, key) for key in keys}
result.update(self._kwargs)
return _remove_empty_values(result)
|
(self)
|
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] |
720,193
|
mldesigner._input_output
|
ready
|
Mark early available output ready.
|
def ready(self) -> None:
"""Mark early available output ready."""
execute_logger = _LoggerFactory.get_logger("execute", target_stdout=True)
# validate
if self._ready is True:
execute_logger.warning(
"Output '%s' has already been marked as ready, ignore current operation.", self._port_name
)
return
if self._value is None:
error_message = f"Early available output {self._port_name!r} is not ready yet, please assign value for it."
raise UserErrorException(error_message)
# validate AzureML limits (https://aka.ms/azure-machine-learning-limits),
# length of property key (100 characters) and length of property value (1000 characters).
# note that we have prefix (azureml.pipeline.control.) in key, so there are 75 characters left.
if len(self._port_name) > 75:
error_message = (
f"Early available output {self._port_name!r} port name is too long, the limit is 75 characters."
)
raise UserErrorException(error_message)
if isinstance(self._value, str) and len(self._value) > 1000:
error_message = (
f"Early available output {self._port_name!r} content is too long, the limit is 1000 characters. "
f"Got {len(self._value)} characters, please control the size."
)
raise UserErrorException(error_message)
# write content to uri_file
from mldesigner._component_executor import _parsed_args
# if component is executed without mldesigner, cannot know where is the target file
if _parsed_args is not None:
execute_logger.info("Write early available output content '%s' to file", self._value)
Path(_parsed_args[self._port_name]).write_text(str(self._value))
# write content to RH
early_available_control_output_key = f"azureml.pipeline.control.{self._port_name}"
_write_properties_to_run_history(
properties={early_available_control_output_key: self._value},
operation_name=RunHistoryOperations.MARK_OUTPUT_READY,
)
self._ready = True
|
(self) -> NoneType
|
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] |
720,194
|
mldesigner._get_io_context
|
OutputContext
|
Component outputs context, output can be accessed with `.<name>`.
|
class OutputContext:
"""Component outputs context, output can be accessed with `.<name>`."""
def __init__(self):
self._outputs: typing.Dict[str, Output] = dict()
def __setattr__(self, name: str, value: str):
if name == "_outputs":
super(OutputContext, self).__setattr__(name, value)
else:
# note: we cannot know the Output type now, so specify `string` here;
# and we cannot validate value type, neither.
self._outputs[name] = Output(type="string", early_available=True)
# update name and value for later writing run history
self._outputs[name]._port_name = name
self._outputs[name]._value = value # pylint: disable=protected-access
self._outputs[name]._ready = False # pylint: disable=protected-access
def __getattr__(self, name: str) -> Output:
if name == "_outputs":
return super(OutputContext, self).__getattribute__(name)
if name not in self._outputs.keys():
error_message = f"Output {name!r} not found, please check the spelling of the name."
raise UserErrorException(error_message)
return self._outputs[name]
|
()
|
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] |
720,195
|
mldesigner._get_io_context
|
__getattr__
| null |
def __getattr__(self, name: str) -> Output:
if name == "_outputs":
return super(OutputContext, self).__getattribute__(name)
if name not in self._outputs.keys():
error_message = f"Output {name!r} not found, please check the spelling of the name."
raise UserErrorException(error_message)
return self._outputs[name]
|
(self, name: str) -> mldesigner._input_output.Output
|
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720,196
|
mldesigner._get_io_context
|
__init__
| null |
def __init__(self):
self._outputs: typing.Dict[str, Output] = dict()
|
(self)
|
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] |
720,197
|
mldesigner._get_io_context
|
__setattr__
| null |
def __setattr__(self, name: str, value: str):
if name == "_outputs":
super(OutputContext, self).__setattr__(name, value)
else:
# note: we cannot know the Output type now, so specify `string` here;
# and we cannot validate value type, neither.
self._outputs[name] = Output(type="string", early_available=True)
# update name and value for later writing run history
self._outputs[name]._port_name = name
self._outputs[name]._value = value # pylint: disable=protected-access
self._outputs[name]._ready = False # pylint: disable=protected-access
|
(self, name: str, value: str)
|
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] |
720,198
|
mldesigner._get_root_pipeline_context
|
PipelineContext
|
Pipeline context, including root pipeline job name and init and/or execution stage information.
You can use `get_root_pipeline_context` to get this during pipeline runtime.
:param root_job_name: Root pipeline job name.
:type root_job_name: str
:param initialization_stage: Initialization stage information.
:type initialization_stage: PipelineStage
:param execution_stage: Execution stage information.
:type execution_stage: PipelineStage
|
class PipelineContext:
"""Pipeline context, including root pipeline job name and init and/or execution stage information.
You can use `get_root_pipeline_context` to get this during pipeline runtime.
:param root_job_name: Root pipeline job name.
:type root_job_name: str
:param initialization_stage: Initialization stage information.
:type initialization_stage: PipelineStage
:param execution_stage: Execution stage information.
:type execution_stage: PipelineStage
"""
def __init__(
self,
root_job_name: str,
initialization_stage: typing.Optional[PipelineStage],
execution_stage: typing.Optional[PipelineStage],
):
self.root_job_name = root_job_name
self.stages = {
STAGE_INIT: initialization_stage,
STAGE_EXECUTION: execution_stage,
}
@staticmethod
def _from_job_properties(properties: typing.Dict) -> "PipelineContext":
try:
root_job_name = properties["rootRunId"]
stages = json.loads(properties["properties"]["azureml.pipelines.stages"])
init_stage = PipelineStage._from_stage(stages.get(STAGE_INIT))
execution_stage = PipelineStage._from_stage(stages.get(STAGE_EXECUTION))
return PipelineContext(root_job_name, init_stage, execution_stage)
except (KeyError, json.decoder.JSONDecodeError, ValueError) as e:
raise SystemErrorException("Parse pipeline job properties failed.") from e
|
(root_job_name: str, initialization_stage: Optional[mldesigner._get_root_pipeline_context.PipelineStage], execution_stage: Optional[mldesigner._get_root_pipeline_context.PipelineStage])
|
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] |
720,199
|
mldesigner._get_root_pipeline_context
|
__init__
| null |
def __init__(
self,
root_job_name: str,
initialization_stage: typing.Optional[PipelineStage],
execution_stage: typing.Optional[PipelineStage],
):
self.root_job_name = root_job_name
self.stages = {
STAGE_INIT: initialization_stage,
STAGE_EXECUTION: execution_stage,
}
|
(self, root_job_name: str, initialization_stage: Optional[mldesigner._get_root_pipeline_context.PipelineStage], execution_stage: Optional[mldesigner._get_root_pipeline_context.PipelineStage])
|
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] |
720,200
|
mldesigner._get_root_pipeline_context
|
_from_job_properties
| null |
@staticmethod
def _from_job_properties(properties: typing.Dict) -> "PipelineContext":
try:
root_job_name = properties["rootRunId"]
stages = json.loads(properties["properties"]["azureml.pipelines.stages"])
init_stage = PipelineStage._from_stage(stages.get(STAGE_INIT))
execution_stage = PipelineStage._from_stage(stages.get(STAGE_EXECUTION))
return PipelineContext(root_job_name, init_stage, execution_stage)
except (KeyError, json.decoder.JSONDecodeError, ValueError) as e:
raise SystemErrorException("Parse pipeline job properties failed.") from e
|
(properties: Dict) -> mldesigner._get_root_pipeline_context.PipelineContext
|
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] |
720,201
|
mldesigner._get_root_pipeline_context
|
PipelineStage
|
Pipeline stage, valid stages are "Initialization" and "Execution".
:param start_time: Stage start time, and you can get this in the string format of ISO 8601
by calling `pipeline_stage.start_time.isoformat()`.
:type start_time: datetime.datetime
:param end_time: Stage end time, similar to start_time.
:type end_time: datetime.datetime
:param status: Stage status.
:type status: str
|
class PipelineStage:
"""Pipeline stage, valid stages are "Initialization" and "Execution".
:param start_time: Stage start time, and you can get this in the string format of ISO 8601
by calling `pipeline_stage.start_time.isoformat()`.
:type start_time: datetime.datetime
:param end_time: Stage end time, similar to start_time.
:type end_time: datetime.datetime
:param status: Stage status.
:type status: str
"""
def __init__(self, start_time: str, end_time: str, status: str):
self.start_time = self._parse_time(start_time)
self.end_time = self._parse_time(end_time)
self.status = status
@staticmethod
def _parse_time(time_string: str) -> datetime.datetime:
# %f for 6 digits, but backend may return different digit ms
ms_start_index, ms_end_index = time_string.index("."), time_string.index("+")
ms = time_string[ms_start_index + 1 : ms_end_index]
normalized_ms = ms.ljust(6, "0")[:6]
normalized_date_string = f"{time_string[:ms_start_index + 1]}{normalized_ms}{time_string[ms_end_index:]}"
return datetime.datetime.strptime(normalized_date_string, TIME_FORMAT)
@staticmethod
def _from_stage(stage: typing.Optional[typing.Dict[str, str]]) -> typing.Optional["PipelineStage"]:
if stage is None:
return None
return PipelineStage(stage["StartTime"], stage["EndTime"], stage["Status"])
|
(start_time: str, end_time: str, status: str)
|
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] |
720,202
|
mldesigner._get_root_pipeline_context
|
__init__
| null |
def __init__(self, start_time: str, end_time: str, status: str):
self.start_time = self._parse_time(start_time)
self.end_time = self._parse_time(end_time)
self.status = status
|
(self, start_time: str, end_time: str, status: str)
|
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] |
720,203
|
mldesigner._get_root_pipeline_context
|
_from_stage
| null |
@staticmethod
def _from_stage(stage: typing.Optional[typing.Dict[str, str]]) -> typing.Optional["PipelineStage"]:
if stage is None:
return None
return PipelineStage(stage["StartTime"], stage["EndTime"], stage["Status"])
|
(stage: Optional[Dict[str, str]]) -> Optional[mldesigner._get_root_pipeline_context.PipelineStage]
|
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] |
720,204
|
mldesigner._get_root_pipeline_context
|
_parse_time
| null |
@staticmethod
def _parse_time(time_string: str) -> datetime.datetime:
# %f for 6 digits, but backend may return different digit ms
ms_start_index, ms_end_index = time_string.index("."), time_string.index("+")
ms = time_string[ms_start_index + 1 : ms_end_index]
normalized_ms = ms.ljust(6, "0")[:6]
normalized_date_string = f"{time_string[:ms_start_index + 1]}{normalized_ms}{time_string[ms_end_index:]}"
return datetime.datetime.strptime(normalized_date_string, TIME_FORMAT)
|
(time_string: str) -> datetime.datetime
|
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] |
720,205
|
mldesigner._utils
|
check_main_package
| null |
def check_main_package(logger=None):
if logger is None:
logger = _LoggerFactory.get_logger("mldesigner")
version = get_package_version("azure-ai-ml")
target_version = "1.2.0"
version_to_check = pkg_resources.parse_version(target_version)
msg = (
f"Mldesigner requires azure-ai-ml >= {target_version} package to be fully functional."
f"It's highly recommended to install the latest azure-ai-ml package."
)
if version:
if not version.startswith("0.0."):
# public version
if pkg_resources.parse_version(version) <= version_to_check:
logger.warning(msg)
else:
logger.warning(msg)
|
(logger=None)
|
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] |
720,219
|
mldesigner._component
|
command_component
|
Return a decorator which is used to declare a component with @command_component.
A component is a reusable unit in an Azure Machine Learning workspace.
With the decorator @command_component, a function could be registered as a component in the workspace.
Then the component could be used to construct an Azure Machine Learning pipeline.
.. note::
The following example shows how to use @command_component to declare a simple component.
.. code-block:: python
@command_component()
def your_component_function(output:Output(), input: Input(), param='str_param'):
pass
The following example shows how to declare a component with detailed meta data.
.. code-block:: python
@command_component(name=name, version=version, description=description)
def your_component_function(output: Output(), input: Input(), param='str_param'):
pass
The following example shows how to consume the declared component function with dsl.pipeline.
.. code-block:: python
from azure.ai.ml import MLClient
from azure.ai.ml.dsl import pipeline
# define pipeline with mldesigner.command_component function
@pipeline()
def your_pipeline_func(input, param):
your_component_function(input=input, param=param)
# create the pipeline
pipeline = your_pipeline_func(your_input, 'your_str')
# Submit pipeline through MLClient
ml_client = MLClient(cred, "my-sub", "my-rg", "my-ws")
ml_client.create_or_update(pipeline)
:param func: The user component function to be decorated.
:type func: types.FunctionType
:param name: The name of the component. If None is set, function name is used.
:type name: str
:param version: Version of the component.
:type version: str
:param display_name: Display name of the component.
:type display_name: str
:param description: The description of the component. If None is set, the doc string is used.
:type description: str
:param is_deterministic: Specify whether the component will always generate the same result. The default value is
None, the component will be reused by default behavior, the same for True value. If
False, this component will never be reused.
:type is_deterministic: bool
:param tags: Tags of the component.
:type tags: dict
:param environment: Environment config of component, could be a yaml file path, a dict or an Environment object.
If None, a default conda with 'azure-ai-ml' will be used.
:type environment: Union[str, os.PathLike, dict, azure.ai.ml.entities.Environment]
:param distribution: The distribution config of component, e.g. distribution={'type': 'mpi'}.
:type distribution: Union[dict, PyTorchDistribution, MpiDistribution, TensorFlowDistribution]
:param resources: Compute Resource configuration for the component.
:type resources: Union[dict, ResourceConfiguration]
:param code: The source directory of component, with default value '.'.
i.e. The directory of mldesigner component file.
:type code: Union[str, PathLike]
:return: The decorated function which could be used to create component directly.
|
def command_component(
func=None,
*,
name=None,
version=None,
display_name=None,
description=None,
is_deterministic=None,
tags=None,
environment: Union[str, dict, PathLike, "Environment"] = None,
distribution: Union[dict, "PyTorchDistribution", "MpiDistribution", "TensorFlowDistribution"] = None,
resources: Union[dict, "ResourceConfiguration"] = None,
code: Union[str, PathLike] = None,
):
"""Return a decorator which is used to declare a component with @command_component.
A component is a reusable unit in an Azure Machine Learning workspace.
With the decorator @command_component, a function could be registered as a component in the workspace.
Then the component could be used to construct an Azure Machine Learning pipeline.
.. note::
The following example shows how to use @command_component to declare a simple component.
.. code-block:: python
@command_component()
def your_component_function(output:Output(), input: Input(), param='str_param'):
pass
The following example shows how to declare a component with detailed meta data.
.. code-block:: python
@command_component(name=name, version=version, description=description)
def your_component_function(output: Output(), input: Input(), param='str_param'):
pass
The following example shows how to consume the declared component function with dsl.pipeline.
.. code-block:: python
from azure.ai.ml import MLClient
from azure.ai.ml.dsl import pipeline
# define pipeline with mldesigner.command_component function
@pipeline()
def your_pipeline_func(input, param):
your_component_function(input=input, param=param)
# create the pipeline
pipeline = your_pipeline_func(your_input, 'your_str')
# Submit pipeline through MLClient
ml_client = MLClient(cred, "my-sub", "my-rg", "my-ws")
ml_client.create_or_update(pipeline)
:param func: The user component function to be decorated.
:type func: types.FunctionType
:param name: The name of the component. If None is set, function name is used.
:type name: str
:param version: Version of the component.
:type version: str
:param display_name: Display name of the component.
:type display_name: str
:param description: The description of the component. If None is set, the doc string is used.
:type description: str
:param is_deterministic: Specify whether the component will always generate the same result. The default value is
None, the component will be reused by default behavior, the same for True value. If
False, this component will never be reused.
:type is_deterministic: bool
:param tags: Tags of the component.
:type tags: dict
:param environment: Environment config of component, could be a yaml file path, a dict or an Environment object.
If None, a default conda with 'azure-ai-ml' will be used.
:type environment: Union[str, os.PathLike, dict, azure.ai.ml.entities.Environment]
:param distribution: The distribution config of component, e.g. distribution={'type': 'mpi'}.
:type distribution: Union[dict, PyTorchDistribution, MpiDistribution, TensorFlowDistribution]
:param resources: Compute Resource configuration for the component.
:type resources: Union[dict, ResourceConfiguration]
:param code: The source directory of component, with default value '.'.
i.e. The directory of mldesigner component file.
:type code: Union[str, PathLike]
:return: The decorated function which could be used to create component directly.
"""
_validate_component_name(name=name)
# Get the directory of decorator to resolve absolute code path in environment
# Note: The decorator defined source directory may be different from mldesigner component source directory.
decorator_defined_source_dir = _resolve_source_directory()
# If is in mldesigner component execution process, skip resolve file path.
EXECUTOR_CLASS = ExecutorBase._get_executor_class()
environment = EXECUTOR_CLASS._refine_environment(environment, decorator_defined_source_dir)
if code:
# Resolve code source immediately if defined with code.
code = Path(decorator_defined_source_dir / code).resolve().absolute().as_posix()
entity_args = {
k: v for k, v in locals().items() if v is not None and k in inspect.signature(command_component).parameters
}
# func is not necessary for component entity
entity_args.pop("func", None)
def component_func_decorator(func: _TFunc) -> _TFunc:
nonlocal entity_args
executor, raw_func, entity_args = _create_executor(
EXECUTOR_CLASS=EXECUTOR_CLASS, func=func, code=code, entity_args=entity_args
)
_component_func = None
@functools.wraps(raw_func)
def wrapper(*args, **kwargs):
nonlocal _component_func, executor
if executor._is_variable_inputs:
variable_inputs_executor = copy.copy(executor)
variable_inputs_executor, func_kwargs = _update_executor_inputs_by_values(
kwargs, raw_func, variable_inputs_executor
)
if EXECUTOR_CLASS == ComponentExecutor:
# Convert inputs to key-value dict.
variable_inputs_dict = (
inspect.signature(variable_inputs_executor._func).bind_partial(*args, **kwargs).arguments
)
kwargs_param = next(
filter(
lambda param: param.kind in [param.VAR_KEYWORD],
inspect.signature(variable_inputs_executor._func).parameters.values(),
)
)
inputs_kwargs = variable_inputs_dict.pop(kwargs_param.name, {})
variable_inputs_dict.update(inputs_kwargs)
variable_inputs_executor._execution_args = dict(variable_inputs_dict)
return variable_inputs_executor
_variable_inputs_component_func = EXECUTOR_CLASS._get_generate_component_function(
variable_inputs_executor.component
)
return _variable_inputs_component_func(*args, **func_kwargs) # pylint: disable=not-callable
if not _component_func:
_component_func = (
# If used in standalone mode, return the executor, otherwise return a component function.
executor
if EXECUTOR_CLASS == ComponentExecutor
else EXECUTOR_CLASS._get_generate_component_function(executor.component)
)
return _component_func(*args, **kwargs)
wrapper._is_mldesigner_component = True
wrapper._executor = executor
if EXECUTOR_CLASS != ComponentExecutor:
wrapper.component = executor.component
return wrapper
# enable using decorator without "()" if all arguments are default values
if func is not None:
return component_func_decorator(func)
return component_func_decorator
|
(func=None, *, name=None, version=None, display_name=None, description=None, is_deterministic=None, tags=None, environment: Union[str, dict, os.PathLike, ForwardRef('Environment')] = None, distribution: Union[dict, ForwardRef('PyTorchDistribution'), ForwardRef('MpiDistribution'), ForwardRef('TensorFlowDistribution')] = None, resources: Union[dict, ForwardRef('ResourceConfiguration')] = None, code: Union[str, os.PathLike] = None)
|
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] |
720,220
|
mldesigner._compile._compile
|
compile
|
Compile sdk-defined components/pipelines to yaml files, or build yaml components/pipelines with snapshot.
A component can be defined through sdk using @mldesigner.command_component decorator, and a pipeline can be
defined using @dsl.pipeline decorator. Such components or pipelines can be compiled into yaml files with mldesigner
compile function. When the input is already a yaml component/pipeline, "output" parameter is required and mldesigner
will build a fully-resolved component/pipeline into this specified output folder.
:param source: Source file or objects to be compiled. Could one of below types:
* SDK-defined component/pipeline function: The decorated function object.
* File path with suffix '.py' : The file that contains sdk-defined components or pipelines.
* File path with suffix '.yaml'(or .yml) : The component/pipeline yaml file.
:type source: Union[str, FunctionType]
:param name: The name of target component/pipeline to be compiled.
:type name: str
:param output: The folder in which to put compiled results.
* If not specified, compiled files are in the same folder with source file.
* If specified, compiled component with its snapshot are in ./{output_folder}/{component_name}/
:type output: str
:param ignore_file: The file path that contains ignore patterns, determines what files will be ignored
during compilation. Only supports '.gitignore' and '.amlignore' file. By default, the compilation
will use ignore files, in the component code folder. If specified, the specified ignore file will
be used COMBINED with original ignore files in the component code folder.
:type ignore_file: Union[str, Path]
:param debug: Determines whether to show detailed debug information, default to be false.
:type debug: bool
|
def compile(
source: Union[str, FunctionType],
*,
name=None,
output=None,
ignore_file=None,
debug=False,
**kwargs,
):
"""Compile sdk-defined components/pipelines to yaml files, or build yaml components/pipelines with snapshot.
A component can be defined through sdk using @mldesigner.command_component decorator, and a pipeline can be
defined using @dsl.pipeline decorator. Such components or pipelines can be compiled into yaml files with mldesigner
compile function. When the input is already a yaml component/pipeline, "output" parameter is required and mldesigner
will build a fully-resolved component/pipeline into this specified output folder.
:param source: Source file or objects to be compiled. Could one of below types:
* SDK-defined component/pipeline function: The decorated function object.
* File path with suffix '.py' : The file that contains sdk-defined components or pipelines.
* File path with suffix '.yaml'(or .yml) : The component/pipeline yaml file.
:type source: Union[str, FunctionType]
:param name: The name of target component/pipeline to be compiled.
:type name: str
:param output: The folder in which to put compiled results.
* If not specified, compiled files are in the same folder with source file.
* If specified, compiled component with its snapshot are in ./{output_folder}/{component_name}/
:type output: str
:param ignore_file: The file path that contains ignore patterns, determines what files will be ignored
during compilation. Only supports '.gitignore' and '.amlignore' file. By default, the compilation
will use ignore files, in the component code folder. If specified, the specified ignore file will
be used COMBINED with original ignore files in the component code folder.
:type ignore_file: Union[str, Path]
:param debug: Determines whether to show detailed debug information, default to be false.
:type debug: bool
"""
# import locally so generate package interface don't depend on azure-ai-ml
try:
from mldesigner._compile._compile_impl import _compile
except ImportError as e:
err_msg = (
"Please install compile extra dependencies by running `pip install mldesigner[pipeline]`, "
f"currently got {e}"
)
raise UserErrorException(err_msg)
return _compile(source=source, name=name, output=output, ignore_file=ignore_file, debug=debug, **kwargs)
|
(source: Union[str, function], *, name=None, output=None, ignore_file=None, debug=False, **kwargs)
|
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] |
720,221
|
mldesigner._execute._execute
|
execute
|
Execute a mldesigner component node.
A mldesigner component node can be generated by calling the @command_component decorated function. The necessary
inputs and outputs are passed during the calling process. Returned result will be a dictionary that contains
function execution result, output file/folder paths if defined.
.. note::
The following code shows a component function definition.
.. code-block:: python
@command_component()
def train_model(
input_data : Input(type="uri_folder"),
lr: int,
max_epocs = 10,
my_output_file: Output(type="uri_file") = None,
my_output_folder: Output(type="uri_folder") = None,
):
pass
Now let's see how to execute above component
.. code-block:: python
from mldesigner import execute
from xxx import train_model
node = train_model(input_data="path0", lr=0.5)
res = execute(node)
The returned result will be a dict:
res -> {
"my_output_file" : "{working_directory}/train_model_{timestamp}/my_output_file",
"my_output_folder": "{working_directory}/train_model_{timestamp}/my_output_folder",
}
:param source: The component source file or an executable component node.
:type source: Union[str, PathLike, ExecutorBase, "Command", "Parallel"]
:return: The return dict that contains function execution result, output file/folder paths
|
def execute(source: Union[ExecutorBase, "Command", "Parallel"]):
"""Execute a mldesigner component node.
A mldesigner component node can be generated by calling the @command_component decorated function. The necessary
inputs and outputs are passed during the calling process. Returned result will be a dictionary that contains
function execution result, output file/folder paths if defined.
.. note::
The following code shows a component function definition.
.. code-block:: python
@command_component()
def train_model(
input_data : Input(type="uri_folder"),
lr: int,
max_epocs = 10,
my_output_file: Output(type="uri_file") = None,
my_output_folder: Output(type="uri_folder") = None,
):
pass
Now let's see how to execute above component
.. code-block:: python
from mldesigner import execute
from xxx import train_model
node = train_model(input_data="path0", lr=0.5)
res = execute(node)
The returned result will be a dict:
res -> {
"my_output_file" : "{working_directory}/train_model_{timestamp}/my_output_file",
"my_output_folder": "{working_directory}/train_model_{timestamp}/my_output_folder",
}
:param source: The component source file or an executable component node.
:type source: Union[str, PathLike, ExecutorBase, "Command", "Parallel"]
:return: The return dict that contains function execution result, output file/folder paths
"""
return _execute(source)
|
(source: Union[mldesigner._component_executor.ExecutorBase, ForwardRef('Command'), ForwardRef('Parallel')])
|
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] |
720,222
|
mldesigner._generate._generate_package
|
generate
|
For a set of source assets, generate a python module which contains component consumption functions and import
it for use.
Supported source types:
- components: component consumption functions
:param source: List[source_identifier], dict[module_relative_path, List[source_identifier]] or str
* None: we will generate a module with ml_client.from_config() if source not specified, not supported for now.
* list example: specify as source pattern list and we will generate modules
.. code-block:: python
# workspace source assets, module name will be workspace name
source = ["azureml://subscriptions/{subscription_id}/resourcegroups/{resource_group}/
workspaces/{workspace_name}"]
# registry source assets, module name will be registry name
source = ["azureml://registries/HuggingFace"]
# local source assets, module name will be "components"
source = ["components/**/component_spec.yaml"]
* dict example: component module name relative path as key and List[source_identifier] as value
.. code-block:: python
# module name with a source identifier
source = {"path/to/component/module": "azureml://subscriptions/{subscription_id}/"
"resourcegroups/{resource_group}/workspaces/{workspace_name}"}
# module name with a list of source identifier
source = {"path/to/component/module": ["azureml://subscriptions/{subscription_id}/"
"resourcegroups/{resource_group}/workspaces/{workspace_name}",
"components/**/component_spec.yaml"]}
* str example: mldesigner.yaml, config file which contains the source dict
.. note::
module_relative_path: relative path of generate component module
* When package name not provided, component module name relative path will relative to current folder
* When package name is provided, component module name relative path will relative to
generated package folder
components: single or list of glob string which specify a set of components. Example values:
* source assets from workspace
1. all source assets
``azureml://subscriptions/{subscription_id}/resource_group/{resource_group}/
workspaces/{workspace_name}``
2. components with name filter
``azureml://subscriptions/{subscription_id}/resource_group/{resource_group}
/workspaces/{workspace_name}/components/microsoft_samples_*``
* components from local yaml
``components/**/component_spec.yaml``
* components from registries
For registry concept, please see: `https://aka.ms/azuremlsharing`.
azureml://registries/HuggingFace # All source assets in registry HuggingFace.
azureml://registries/HuggingFace/components/Microsoft*
:type source: typing.Union[list, dict, str]
:param package_name: name of the generated python package. Example: cool-component-package
* If specified: we generate the module file to specified package.
* If the cool-component-package folder does not exists, we will create a new skeleton package under
./cool-component-package and print info in command line and ask user to do:
``pip install -e ./cool-component-package``
Then next user can do: 'from cool.component.package import component_func'
* If the folder exists, we will try to update component folders inside .
* If not specified, we generate the module directory under current directory.
:type package_name: str
:param force_regenerate: whether to force regenerate the python module file.
* If True, will always regenerate component folder.
* If False, will reuse previous generated file. If the existing file not valid, raise import error.
:type force_regenerate: bool
:param kwargs: A dictionary of additional configuration parameters.
:type kwargs: dict
|
def generate(
*,
source: Union[list, dict, str],
package_name: str = None,
force_regenerate: bool = False,
**kwargs,
) -> None:
"""For a set of source assets, generate a python module which contains component consumption functions and import
it for use.
Supported source types:
- components: component consumption functions
:param source: List[source_identifier], dict[module_relative_path, List[source_identifier]] or str
* None: we will generate a module with ml_client.from_config() if source not specified, not supported for now.
* list example: specify as source pattern list and we will generate modules
.. code-block:: python
# workspace source assets, module name will be workspace name
source = ["azureml://subscriptions/{subscription_id}/resourcegroups/{resource_group}/
workspaces/{workspace_name}"]
# registry source assets, module name will be registry name
source = ["azureml://registries/HuggingFace"]
# local source assets, module name will be "components"
source = ["components/**/component_spec.yaml"]
* dict example: component module name relative path as key and List[source_identifier] as value
.. code-block:: python
# module name with a source identifier
source = {"path/to/component/module": "azureml://subscriptions/{subscription_id}/"
"resourcegroups/{resource_group}/workspaces/{workspace_name}"}
# module name with a list of source identifier
source = {"path/to/component/module": ["azureml://subscriptions/{subscription_id}/"
"resourcegroups/{resource_group}/workspaces/{workspace_name}",
"components/**/component_spec.yaml"]}
* str example: mldesigner.yaml, config file which contains the source dict
.. note::
module_relative_path: relative path of generate component module
* When package name not provided, component module name relative path will relative to current folder
* When package name is provided, component module name relative path will relative to
generated package folder
components: single or list of glob string which specify a set of components. Example values:
* source assets from workspace
1. all source assets
``azureml://subscriptions/{subscription_id}/resource_group/{resource_group}/
workspaces/{workspace_name}``
2. components with name filter
``azureml://subscriptions/{subscription_id}/resource_group/{resource_group}
/workspaces/{workspace_name}/components/microsoft_samples_*``
* components from local yaml
``components/**/component_spec.yaml``
* components from registries
For registry concept, please see: `https://aka.ms/azuremlsharing`.
azureml://registries/HuggingFace # All source assets in registry HuggingFace.
azureml://registries/HuggingFace/components/Microsoft*
:type source: typing.Union[list, dict, str]
:param package_name: name of the generated python package. Example: cool-component-package
* If specified: we generate the module file to specified package.
* If the cool-component-package folder does not exists, we will create a new skeleton package under
./cool-component-package and print info in command line and ask user to do:
``pip install -e ./cool-component-package``
Then next user can do: 'from cool.component.package import component_func'
* If the folder exists, we will try to update component folders inside .
* If not specified, we generate the module directory under current directory.
:type package_name: str
:param force_regenerate: whether to force regenerate the python module file.
* If True, will always regenerate component folder.
* If False, will reuse previous generated file. If the existing file not valid, raise import error.
:type force_regenerate: bool
:param kwargs: A dictionary of additional configuration parameters.
:type kwargs: dict
"""
# import locally so generate package interface don't depend on azure-ai-ml
try:
from mldesigner._generate._generate_package_impl import _generate
except ImportError as e:
err_msg = (
"Please install generate extra dependencies by running `pip install mldesigner[pipeline]`, "
f"currently got {e}"
)
raise UserErrorException(err_msg)
return _generate(source=source, package_name=package_name, force_regenerate=force_regenerate, **kwargs)
|
(*, source: Union[list, dict, str], package_name: Optional[str] = None, force_regenerate: bool = False, **kwargs) -> NoneType
|
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] |
720,223
|
mldesigner._get_io_context
|
get_io_context
|
Get `IOContext` that contains component outputs information during runtime.
Outputs can be accessed via `.outputs` from `IOContext` object.
Early available output can be marked as ready with below code.
.. code-block:: python
from mldesigner import get_io_context
ctx = get_io_context()
ctx.outputs.output = "meta.txt"
ctx.outputs.output.ready()
# multiple outputs to mark ready
# omit the lines assign values
ctx.outputs.output1.ready()
ctx.outputs.output2.ready()
|
def get_io_context() -> IOContext:
"""Get `IOContext` that contains component outputs information during runtime.
Outputs can be accessed via `.outputs` from `IOContext` object.
Early available output can be marked as ready with below code.
.. code-block:: python
from mldesigner import get_io_context
ctx = get_io_context()
ctx.outputs.output = "meta.txt"
ctx.outputs.output.ready()
# multiple outputs to mark ready
# omit the lines assign values
ctx.outputs.output1.ready()
ctx.outputs.output2.ready()
"""
return IOContext()
|
() -> mldesigner._get_io_context.IOContext
|
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] |
720,224
|
mldesigner._get_root_pipeline_context
|
get_root_pipeline_context
|
Get root pipeline job information, including init/execution stage status and start/end time.
Both init and execution stage are optional: for pipeline job without init job, init stage will be None;
for pipeline job whose init job fails, execution stage will be None. This function will only work during runtime.
.. code-block:: python
from mldesigner import get_root_pipeline_context
context = get_root_pipeline_context()
root_job_name = context.root_job_name
print("root pipeline job name:", root_job_name)
# stage info, including statue, start/end time
# note that init_stage and execution_stage can be None in some scenarios
init_stage = context.stages["Initialization"]
execution_stage = context.stages["Execution"]
print("execution stage status:", execution_stage.status)
print("execution stage start time:", execution_stage.start_time)
print("execution stage end time:", execution_stage.end_time)
|
def get_root_pipeline_context() -> PipelineContext:
"""Get root pipeline job information, including init/execution stage status and start/end time.
Both init and execution stage are optional: for pipeline job without init job, init stage will be None;
for pipeline job whose init job fails, execution stage will be None. This function will only work during runtime.
.. code-block:: python
from mldesigner import get_root_pipeline_context
context = get_root_pipeline_context()
root_job_name = context.root_job_name
print("root pipeline job name:", root_job_name)
# stage info, including statue, start/end time
# note that init_stage and execution_stage can be None in some scenarios
init_stage = context.stages["Initialization"]
execution_stage = context.stages["Execution"]
print("execution stage status:", execution_stage.status)
print("execution stage start time:", execution_stage.start_time)
print("execution stage end time:", execution_stage.end_time)
"""
def _get_root_job_properties() -> typing.Dict:
try:
import mlflow
from mlflow.tracking import MlflowClient
from mlflow.utils.rest_utils import http_request
except ImportError as e:
error_message = "mlflow is required for `get_root_pipeline_context`, please install mlflow first."
raise ImportError(error_message) from e
def _get_job_properties(_cred, _experiment_id: str, _job_id: str) -> typing.Dict:
return http_request(
host_creds=_cred,
endpoint="/experimentids/{}/runs/{}".format(_experiment_id, _job_id),
method="GET",
).json()
with mlflow.start_run() as run:
client = MlflowClient()
# get auth & update host to run history
cred = client._tracking_client.store.get_host_creds()
cred.host = cred.host.replace(
"api.azureml.ms",
"experiments.azureml.net",
).replace("mlflow/v1.0", "history/v1.0")
# get finalize job properties first to get root job id
finalize_job_properties = _get_job_properties(cred, run.info.experiment_id, run.info.run_id)
root_job_id = finalize_job_properties["rootRunId"]
return _get_job_properties(cred, run.info.experiment_id, root_job_id)
return PipelineContext._from_job_properties(_get_root_job_properties())
|
() -> mldesigner._get_root_pipeline_context.PipelineContext
|
[
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] |
720,225
|
mldesigner._reference_component
|
reference_component
|
Reference an existing component with a function and return a component node built with given params.
The referenced component can be defined with local yaml file or in remote with name and version.
The returned component node type are hint with function return annotation and default to Command.
If the referenced component is local component, it'll be registered as anonymous component in pipeline's workspace.
If the referenced component is workspace component, we assume it has been registered in pipeline's workspace.
If the referenced component is registry component, it'll still be referenced from registry in pipeline.
Eg: Both
.. code-block:: python
@reference_component()
def my_func():
...
and
.. code-block:: python
@reference_component()
def my_func() -> Command:
...
with return a Command node.
.. code-block:: python
@reference_component()
def my_func() -> Parallel:
...
will return a Parallel node.
:param path: Path to local component file.
:type path: str
:param name: Name of component to load.
:type name: str
:param version: Version of component to load.
:type version: str
:param registry: Registry of component's source. None means it's not a registry component.
:type registry: str
:return: Component node.
:rtype: Union[Command, Parallel]
|
def reference_component(path: Union[PathLike, str] = None, name=None, version=None, registry=None, **kwargs) -> _TFunc:
"""Reference an existing component with a function and return a component node built with given params.
The referenced component can be defined with local yaml file or in remote with name and version.
The returned component node type are hint with function return annotation and default to Command.
If the referenced component is local component, it'll be registered as anonymous component in pipeline's workspace.
If the referenced component is workspace component, we assume it has been registered in pipeline's workspace.
If the referenced component is registry component, it'll still be referenced from registry in pipeline.
Eg: Both
.. code-block:: python
@reference_component()
def my_func():
...
and
.. code-block:: python
@reference_component()
def my_func() -> Command:
...
with return a Command node.
.. code-block:: python
@reference_component()
def my_func() -> Parallel:
...
will return a Parallel node.
:param path: Path to local component file.
:type path: str
:param name: Name of component to load.
:type name: str
:param version: Version of component to load.
:type version: str
:param registry: Registry of component's source. None means it's not a registry component.
:type registry: str
:return: Component node.
:rtype: Union[Command, Parallel]
"""
def component_decorator(func: _TFunc) -> _TFunc:
@wraps(func)
def wrapper(*args, **inner_kwargs):
from mldesigner._azure_ai_ml import Command
from mldesigner._component_loader import ComponentLoader, ComponentsConfig
from mldesigner._exceptions import UserErrorException
from mldesigner._generate._generators._constants import COMPONENT_TO_NODE
if args:
raise UserErrorException(
message="`reference_component` wrapped function only accept keyword parameters."
)
# handle params case insensitively, raise error when unknown kwargs are passed
_assert_arg_valid(inner_kwargs, func.__code__.co_varnames, func_name=func.__name__)
# currently component loader only support load 1 component in reference_component
# create a component loader only contain 1 component config with function name as key
component_loader = ComponentLoader(
components_config=ComponentsConfig.create_single_component_config(
key=func.__name__, path=path, name=name, version=version, registry=registry
),
default_component_loader_config_path=DEFAULT_COMPONENT_LOADER_CONFIG_PATH,
)
component = component_loader.load_component(name=func.__name__)
if hasattr(component, "type") and component.type in COMPONENT_TO_NODE:
node = component(**inner_kwargs)
else:
result_cls = get_type_hints(func).get("return", Command)
# Get component outputs
result_properties = get_type_hints(result_cls)
outputs = {}
if "outputs" in result_properties:
from mldesigner._azure_ai_ml import Output
outputs_cls = get_type_hints(result_cls)["outputs"]
# Get output type by source code.
output_types = {k: _convert_internal_type(v) for k, v in _detect_output_types(outputs_cls)}
annotation_outputs = get_type_hints(outputs_cls)
outputs = {k: Output(type=output_types.get(k, None)) for k, v in annotation_outputs.items()}
# supported return annotations, traverse in order
# Note: make sure no base node in supported_cls
supported_cls = COMPONENT_TO_NODE.values()
for cls in supported_cls:
if issubclass(result_cls, cls):
result_cls = cls
if result_cls not in supported_cls:
msg = (
f"Return annotation of `reference_component` wrapped function can only be {supported_cls} "
f"or its subclass, got {result_cls} instead."
)
raise UserErrorException(message=msg)
# This node will be init with inner_kwargs and push to pipeline stack
node = result_cls(component=component, inputs=inner_kwargs, outputs=outputs, _from_component_func=True)
# Update remote component output types
if name and version:
for output_name, output in node.outputs.items():
if output_name in outputs:
# TODO enable update primitive type output
output.type = outputs[output_name].type
node = component_loader.apply_post_load_func(node=node)
return node
return wrapper
return component_decorator
|
(path: Union[os.PathLike, str, NoneType] = None, name=None, version=None, registry=None, **kwargs) -> ~_TFunc
|
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] |
720,226
|
ete3.coretype.arraytable
|
ArrayTable
|
This object is thought to work with matrix datasets (like
microarrays). It allows to load the matrix an access easily to row
and column vectors.
|
class ArrayTable(object):
"""This object is thought to work with matrix datasets (like
microarrays). It allows to load the matrix an access easily to row
and column vectors. """
def __repr__(self):
return "ArrayTable (%s)" %hex(self.__hash__())
def __str__(self):
return str(self.matrix)
def __init__(self, matrix_file=None, mtype="float"):
self.colNames = []
self.rowNames = []
self.colValues = {}
self.rowValues = {}
self.matrix = None
self.mtype = None
# If matrix file is supplied
if matrix_file is not None:
read_arraytable(matrix_file, \
mtype=mtype, \
arraytable_object = self)
def get_row_vector(self,rowname):
""" Returns the vector associated to the given row name """
return self.rowValues.get(rowname,None)
def get_column_vector(self,colname):
""" Returns the vector associated to the given column name """
return self.colValues.get(colname,None)
def get_several_column_vectors(self,colnames):
""" Returns a list of vectors associated to several column names """
vectors = [self.colValues[cname] for cname in colnames]
return numpy.array(vectors)
def get_several_row_vectors(self,rownames):
""" Returns a list vectors associated to several row names """
vectors = [self.rowValues[rname] for rname in rownames]
return numpy.array(vectors)
def remove_column(self,colname):
"""Removes the given column form the current dataset """
col_value = self.colValues.pop(colname, None)
if col_value is not None:
new_indexes = list(range(len(self.colNames)))
index = self.colNames.index(colname)
self.colNames.pop(index)
new_indexes.pop(index)
newmatrix = self.matrix.swapaxes(0,1)
newmatrix = newmatrix[new_indexes].swapaxes(0,1)
self._link_names2matrix(newmatrix)
def merge_columns(self, groups, grouping_criterion):
""" Returns a new ArrayTable object in which columns are
merged according to a given criterion.
'groups' argument must be a dictionary in which keys are the
new column names, and each value is the list of current
column names to be merged.
'grouping_criterion' must be 'min', 'max' or 'mean', and
defines how numeric values will be merged.
Example:
my_groups = {'NewColumn':['column5', 'column6']}
new_Array = Array.merge_columns(my_groups, 'max')
"""
if grouping_criterion == "max":
grouping_f = get_max_vector
elif grouping_criterion == "min":
grouping_f = get_min_vector
elif grouping_criterion == "mean":
grouping_f = get_mean_vector
else:
raise ValueError("grouping_criterion not supported. Use max|min|mean ")
grouped_array = self.__class__()
grouped_matrix = []
colNames = []
alltnames = set([])
for gname,tnames in six.iteritems(groups):
all_vectors=[]
for tn in tnames:
if tn not in self.colValues:
raise ValueError(str(tn)+" column not found.")
if tn in alltnames:
raise ValueError(str(tn)+" duplicated column name for merging")
alltnames.add(tn)
vector = self.get_column_vector(tn).astype(float)
all_vectors.append(vector)
# Store the group vector = max expression of all items in group
grouped_matrix.append(grouping_f(all_vectors))
# store group name
colNames.append(gname)
for cname in self.colNames:
if cname not in alltnames:
grouped_matrix.append(self.get_column_vector(cname))
colNames.append(cname)
grouped_array.rowNames= self.rowNames
grouped_array.colNames= colNames
vmatrix = numpy.array(grouped_matrix).transpose()
grouped_array._link_names2matrix(vmatrix)
return grouped_array
def transpose(self):
""" Returns a new ArrayTable in which current matrix is transposed. """
transposedA = self.__class__()
transposedM = self.matrix.transpose()
transposedA.colNames = list(self.rowNames)
transposedA.rowNames = list(self.colNames)
transposedA._link_names2matrix(transposedM)
# Check that everything is ok
# for n in self.colNames:
# print self.get_column_vector(n) == transposedA.get_row_vector(n)
# for n in self.rowNames:
# print self.get_row_vector(n) == transposedA.get_column_vector(n)
return transposedA
def _link_names2matrix(self, m):
""" Synchronize curent column and row names to the given matrix"""
if len(self.rowNames) != m.shape[0]:
raise ValueError("Expecting matrix with %d rows" % m.size[0])
if len(self.colNames) != m.shape[1]:
raise ValueError("Expecting matrix with %d columns" % m.size[1])
self.matrix = m
self.colValues.clear()
self.rowValues.clear()
# link columns names to vectors
i = 0
for colname in self.colNames:
self.colValues[colname] = self.matrix[:,i]
i+=1
# link row names to vectors
i = 0
for rowname in self.rowNames:
self.rowValues[rowname] = self.matrix[i,:]
i+=1
def write(self, fname, colnames=None):
write_arraytable(self, fname, colnames=colnames)
|
(matrix_file=None, mtype='float')
|
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] |
720,227
|
ete3.coretype.arraytable
|
__init__
| null |
def __init__(self, matrix_file=None, mtype="float"):
self.colNames = []
self.rowNames = []
self.colValues = {}
self.rowValues = {}
self.matrix = None
self.mtype = None
# If matrix file is supplied
if matrix_file is not None:
read_arraytable(matrix_file, \
mtype=mtype, \
arraytable_object = self)
|
(self, matrix_file=None, mtype='float')
|
[
0.03329043835401535,
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0.038416314870119095,
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720,228
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ete3.coretype.arraytable
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__repr__
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def __repr__(self):
return "ArrayTable (%s)" %hex(self.__hash__())
|
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720,229
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ete3.coretype.arraytable
|
__str__
| null |
def __str__(self):
return str(self.matrix)
|
(self)
|
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] |
720,230
|
ete3.coretype.arraytable
|
_link_names2matrix
|
Synchronize curent column and row names to the given matrix
|
def _link_names2matrix(self, m):
""" Synchronize curent column and row names to the given matrix"""
if len(self.rowNames) != m.shape[0]:
raise ValueError("Expecting matrix with %d rows" % m.size[0])
if len(self.colNames) != m.shape[1]:
raise ValueError("Expecting matrix with %d columns" % m.size[1])
self.matrix = m
self.colValues.clear()
self.rowValues.clear()
# link columns names to vectors
i = 0
for colname in self.colNames:
self.colValues[colname] = self.matrix[:,i]
i+=1
# link row names to vectors
i = 0
for rowname in self.rowNames:
self.rowValues[rowname] = self.matrix[i,:]
i+=1
|
(self, m)
|
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] |
720,231
|
ete3.coretype.arraytable
|
get_column_vector
|
Returns the vector associated to the given column name
|
def get_column_vector(self,colname):
""" Returns the vector associated to the given column name """
return self.colValues.get(colname,None)
|
(self, colname)
|
[
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] |
720,232
|
ete3.coretype.arraytable
|
get_row_vector
|
Returns the vector associated to the given row name
|
def get_row_vector(self,rowname):
""" Returns the vector associated to the given row name """
return self.rowValues.get(rowname,None)
|
(self, rowname)
|
[
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] |
720,233
|
ete3.coretype.arraytable
|
get_several_column_vectors
|
Returns a list of vectors associated to several column names
|
def get_several_column_vectors(self,colnames):
""" Returns a list of vectors associated to several column names """
vectors = [self.colValues[cname] for cname in colnames]
return numpy.array(vectors)
|
(self, colnames)
|
[
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] |
720,234
|
ete3.coretype.arraytable
|
get_several_row_vectors
|
Returns a list vectors associated to several row names
|
def get_several_row_vectors(self,rownames):
""" Returns a list vectors associated to several row names """
vectors = [self.rowValues[rname] for rname in rownames]
return numpy.array(vectors)
|
(self, rownames)
|
[
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] |
720,235
|
ete3.coretype.arraytable
|
merge_columns
|
Returns a new ArrayTable object in which columns are
merged according to a given criterion.
'groups' argument must be a dictionary in which keys are the
new column names, and each value is the list of current
column names to be merged.
'grouping_criterion' must be 'min', 'max' or 'mean', and
defines how numeric values will be merged.
Example:
my_groups = {'NewColumn':['column5', 'column6']}
new_Array = Array.merge_columns(my_groups, 'max')
|
def merge_columns(self, groups, grouping_criterion):
""" Returns a new ArrayTable object in which columns are
merged according to a given criterion.
'groups' argument must be a dictionary in which keys are the
new column names, and each value is the list of current
column names to be merged.
'grouping_criterion' must be 'min', 'max' or 'mean', and
defines how numeric values will be merged.
Example:
my_groups = {'NewColumn':['column5', 'column6']}
new_Array = Array.merge_columns(my_groups, 'max')
"""
if grouping_criterion == "max":
grouping_f = get_max_vector
elif grouping_criterion == "min":
grouping_f = get_min_vector
elif grouping_criterion == "mean":
grouping_f = get_mean_vector
else:
raise ValueError("grouping_criterion not supported. Use max|min|mean ")
grouped_array = self.__class__()
grouped_matrix = []
colNames = []
alltnames = set([])
for gname,tnames in six.iteritems(groups):
all_vectors=[]
for tn in tnames:
if tn not in self.colValues:
raise ValueError(str(tn)+" column not found.")
if tn in alltnames:
raise ValueError(str(tn)+" duplicated column name for merging")
alltnames.add(tn)
vector = self.get_column_vector(tn).astype(float)
all_vectors.append(vector)
# Store the group vector = max expression of all items in group
grouped_matrix.append(grouping_f(all_vectors))
# store group name
colNames.append(gname)
for cname in self.colNames:
if cname not in alltnames:
grouped_matrix.append(self.get_column_vector(cname))
colNames.append(cname)
grouped_array.rowNames= self.rowNames
grouped_array.colNames= colNames
vmatrix = numpy.array(grouped_matrix).transpose()
grouped_array._link_names2matrix(vmatrix)
return grouped_array
|
(self, groups, grouping_criterion)
|
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] |
720,236
|
ete3.coretype.arraytable
|
remove_column
|
Removes the given column form the current dataset
|
def remove_column(self,colname):
"""Removes the given column form the current dataset """
col_value = self.colValues.pop(colname, None)
if col_value is not None:
new_indexes = list(range(len(self.colNames)))
index = self.colNames.index(colname)
self.colNames.pop(index)
new_indexes.pop(index)
newmatrix = self.matrix.swapaxes(0,1)
newmatrix = newmatrix[new_indexes].swapaxes(0,1)
self._link_names2matrix(newmatrix)
|
(self, colname)
|
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] |
720,237
|
ete3.coretype.arraytable
|
transpose
|
Returns a new ArrayTable in which current matrix is transposed.
|
def transpose(self):
""" Returns a new ArrayTable in which current matrix is transposed. """
transposedA = self.__class__()
transposedM = self.matrix.transpose()
transposedA.colNames = list(self.rowNames)
transposedA.rowNames = list(self.colNames)
transposedA._link_names2matrix(transposedM)
# Check that everything is ok
# for n in self.colNames:
# print self.get_column_vector(n) == transposedA.get_row_vector(n)
# for n in self.rowNames:
# print self.get_row_vector(n) == transposedA.get_column_vector(n)
return transposedA
|
(self)
|
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720,238
|
ete3.coretype.arraytable
|
write
| null |
def write(self, fname, colnames=None):
write_arraytable(self, fname, colnames=colnames)
|
(self, fname, colnames=None)
|
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] |
720,239
|
ete3.clustering.clustertree
|
ClusterNode
|
Creates a new Cluster Tree object, which is a collection
of ClusterNode instances connected in a hierarchical way, and
representing a clustering result.
a newick file or string can be passed as the first argument. An
ArrayTable file or instance can be passed as a second argument.
Examples:
t1 = Tree() # creates an empty tree
t2 = Tree( '(A:1,(B:1,(C:1,D:1):0.5):0.5);' )
t3 = Tree( '/home/user/myNewickFile.txt' )
|
class ClusterNode(TreeNode):
""" Creates a new Cluster Tree object, which is a collection
of ClusterNode instances connected in a hierarchical way, and
representing a clustering result.
a newick file or string can be passed as the first argument. An
ArrayTable file or instance can be passed as a second argument.
Examples:
t1 = Tree() # creates an empty tree
t2 = Tree( '(A:1,(B:1,(C:1,D:1):0.5):0.5);' )
t3 = Tree( '/home/user/myNewickFile.txt' )
"""
def _set_forbidden(self, value):
raise ValueError("This attribute can not be manually set.")
def _get_intra(self):
if self._silhouette is None:
self.get_silhouette()
return self._intracluster_dist
def _get_inter(self):
if self._silhouette is None:
self.get_silhouette()
return self._intercluster_dist
def _get_silh(self):
if self._silhouette is None:
self.get_silhouette()
return self._silhouette
def _get_prof(self):
if self._profile is None:
self._calculate_avg_profile()
return self._profile
def _get_std(self):
if self._std_profile is None:
self._calculate_avg_profile()
return self._std_profile
def _set_profile(self, value):
self._profile = value
intracluster_dist = property(fget=_get_intra, fset=_set_forbidden)
intercluster_dist = property(fget=_get_inter, fset=_set_forbidden)
silhouette = property(fget=_get_silh, fset=_set_forbidden)
profile = property(fget=_get_prof, fset=_set_profile)
deviation = property(fget=_get_std, fset=_set_forbidden)
def __init__(self, newick = None, text_array = None, \
fdist=clustvalidation.default_dist):
# Default dist is spearman_dist when scipy module is loaded
# otherwise, it is set to euclidean_dist.
# Initialize basic tree features and loads the newick (if any)
TreeNode.__init__(self, newick)
self._fdist = None
self._silhouette = None
self._intercluster_dist = None
self._intracluster_dist = None
self._profile = None
self._std_profile = None
# Cluster especific features
self.features.add("intercluster_dist")
self.features.add("intracluster_dist")
self.features.add("silhouette")
self.features.add("profile")
self.features.add("deviation")
# Initialize tree with array data
if text_array:
self.link_to_arraytable(text_array)
if newick:
self.set_distance_function(fdist)
def __repr__(self):
return "ClusterTree node (%s)" %hex(self.__hash__())
def set_distance_function(self, fn):
""" Sets the distance function used to calculate cluster
distances and silouette index.
ARGUMENTS:
fn: a pointer to python function acepting two arrays (numpy) as
arguments.
EXAMPLE:
# A simple euclidean distance
my_dist_fn = lambda x,y: abs(x-y)
tree.set_distance_function(my_dist_fn)
"""
for n in self.traverse():
n._fdist = fn
n._silhouette = None
n._intercluster_dist = None
n._intracluster_dist = None
def link_to_arraytable(self, arraytbl):
""" Allows to link a given arraytable object to the tree
structure under this node. Row names in the arraytable object
are expected to match leaf names.
Returns a list of nodes for with profiles could not been found
in arraytable.
"""
# Initialize tree with array data
if type(arraytbl) == ArrayTable:
array = arraytbl
else:
array = ArrayTable(arraytbl)
missing_leaves = []
matrix_values = [i for r in range(len(array.matrix))\
for i in array.matrix[r] if numpy.isfinite(i)]
array._matrix_min = min(matrix_values)
array._matrix_max = max(matrix_values)
for n in self.traverse():
n.arraytable = array
if n.is_leaf() and n.name in array.rowNames:
n._profile = array.get_row_vector(n.name)
elif n.is_leaf():
n._profile = [numpy.nan]*len(array.colNames)
missing_leaves.append(n)
if len(missing_leaves)>0:
print("""[%d] leaf names could not be mapped to the matrix rows.""" %\
len(missing_leaves), file=stderr)
self.arraytable = array
def iter_leaf_profiles(self):
""" Returns an iterator over all the profiles associated to
the leaves under this node."""
for l in self.iter_leaves():
yield l.get_profile()[0]
def get_leaf_profiles(self):
""" Returns the list of all the profiles associated to the
leaves under this node."""
return [l.get_profile()[0] for l in self.iter_leaves()]
def get_silhouette(self, fdist=None):
""" Calculates the node's silhouette value by using a given
distance function. By default, euclidean distance is used. It
also calculates the deviation profile, mean profile, and
inter/intra-cluster distances.
It sets the following features into the analyzed node:
- node.intracluster
- node.intercluster
- node.silhouete
intracluster distances a(i) are calculated as the Centroid
Diameter
intercluster distances b(i) are calculated as the Centroid linkage distance
** Rousseeuw, P.J. (1987) Silhouettes: A graphical aid to the
interpretation and validation of cluster analysis.
J. Comput. Appl. Math., 20, 53-65.
"""
if fdist is None:
fdist = self._fdist
# Updates internal values
self._silhouette, self._intracluster_dist, self._intercluster_dist = \
clustvalidation.get_silhouette_width(fdist, self)
# And returns them
return self._silhouette, self._intracluster_dist, self._intercluster_dist
def get_dunn(self, clusters, fdist=None):
""" Calculates the Dunn index for the given set of descendant
nodes.
"""
if fdist is None:
fdist = self._fdist
nodes = _translate_nodes(self, *clusters)
return clustvalidation.get_dunn_index(fdist, *nodes)
def _calculate_avg_profile(self):
""" This internal function updates the mean profile
associated to an internal node. """
# Updates internal values
self._profile, self._std_profile = clustvalidation.get_avg_profile(self)
|
(newick=None, text_array=None, fdist=<function spearman_dist at 0x7ff39b713d90>)
|
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] |
720,240
|
ete3.coretype.tree
|
__add__
|
This allows to sum two trees.
|
def __add__(self, value):
""" This allows to sum two trees."""
# Should a make the sum with two copies of the original trees?
if type(value) == self.__class__:
new_root = self.__class__()
new_root.add_child(self)
new_root.add_child(value)
return new_root
else:
raise TreeError("Invalid node type")
|
(self, value)
|
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] |
720,241
|
ete3.coretype.tree
|
__and__
|
This allows to execute tree&'A' to obtain the descendant node
whose name is A
|
def __and__(self, value):
""" This allows to execute tree&'A' to obtain the descendant node
whose name is A"""
value=str(value)
try:
first_match = next(self.iter_search_nodes(name=value))
return first_match
except StopIteration:
raise TreeError("Node not found")
|
(self, value)
|
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] |
720,242
|
ete3.coretype.tree
|
__bool__
|
Python3's equivalent of __nonzero__
If this is not defined bool(class_instance) will call
__len__ in python3
|
def __bool__(self):
"""
Python3's equivalent of __nonzero__
If this is not defined bool(class_instance) will call
__len__ in python3
"""
return True
|
(self)
|
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] |
720,243
|
ete3.coretype.tree
|
__contains__
|
Check if item belongs to this node. The 'item' argument must
be a node instance or its associated name.
|
def __contains__(self, item):
""" Check if item belongs to this node. The 'item' argument must
be a node instance or its associated name."""
if isinstance(item, self.__class__):
return item in set(self.get_descendants())
elif type(item)==str:
return item in set([n.name for n in self.traverse()])
|
(self, item)
|
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] |
720,244
|
ete3.clustering.clustertree
|
__init__
| null |
def __init__(self, newick = None, text_array = None, \
fdist=clustvalidation.default_dist):
# Default dist is spearman_dist when scipy module is loaded
# otherwise, it is set to euclidean_dist.
# Initialize basic tree features and loads the newick (if any)
TreeNode.__init__(self, newick)
self._fdist = None
self._silhouette = None
self._intercluster_dist = None
self._intracluster_dist = None
self._profile = None
self._std_profile = None
# Cluster especific features
self.features.add("intercluster_dist")
self.features.add("intracluster_dist")
self.features.add("silhouette")
self.features.add("profile")
self.features.add("deviation")
# Initialize tree with array data
if text_array:
self.link_to_arraytable(text_array)
if newick:
self.set_distance_function(fdist)
|
(self, newick=None, text_array=None, fdist=<function spearman_dist at 0x7ff39b713d90>)
|
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] |
720,245
|
ete3.coretype.tree
|
__iter__
|
Iterator over leaf nodes
|
def __iter__(self):
""" Iterator over leaf nodes"""
return self.iter_leaves()
|
(self)
|
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] |
720,246
|
ete3.coretype.tree
|
__len__
|
Node len returns number of children.
|
def __len__(self):
"""Node len returns number of children."""
return len(self.get_leaves())
|
(self)
|
[
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720,248
|
ete3.clustering.clustertree
|
__repr__
| null |
def __repr__(self):
return "ClusterTree node (%s)" %hex(self.__hash__())
|
(self)
|
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] |
720,249
|
ete3.coretype.tree
|
__str__
|
Print tree in newick format.
|
def __str__(self):
""" Print tree in newick format. """
return self.get_ascii(compact=DEFAULT_COMPACT, \
show_internal=DEFAULT_SHOWINTERNAL)
|
(self)
|
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