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def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _match_less_than_or_equal(search_base, attribute, value, candidates): matches = list() for entry in candidates: dn = entry.get("dn") if not dn.endswith(search_base): continue value_from_directory = entry.get("attributes").get(attribute) ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def submit(self, copy_id_photo_from=None): """ Submit our verification attempt to Software Secure for validation. This will set our status to "submitted" if the post is successful, and "must_retry" if the post fails. Keyword Arguments: copy_id_photo_from (SoftwareSec...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _match_less_than(search_base, attribute, value, candidates): matches = list() for entry in candidates: dn = entry.get("dn") if not dn.endswith(search_base): continue value_from_directory = entry.get("attributes").get(attribute) if str(...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def parsed_error_msg(self): """ Parse the error messages we receive from SoftwareSecure Error messages are written in the form: `[{"photoIdReasons": ["Not provided"]}]` Returns: str[]: List of error messages. """ parsed_errors = [] error...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _match_equal_to(search_base, attribute, value, candidates): matches = list() match_using_regex = False if "*" in value: match_using_regex = True #regex = check_escape(value) regex = value.replace('*', '.*') regex = "^{0}$".format(regex) ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def image_url(self, name, override_receipt_id=None): """ We dynamically generate this, since we want it the expiration clock to start when the message is created, not when the record is created. Arguments: name (str): Name of the image (e.g. "photo_id" or "face") Ke...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _match_notequal_to(search_base, attribute, value, candidates): matches = list() match_using_regex = False if "*" in value: match_using_regex = True #regex = check_escape(value) regex = value.replace('*', '.*') regex = "^{0}$".format(regex) ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _storage(self): """ Return the configured django storage backend. """ config = settings.VERIFY_STUDENT["SOFTWARE_SECURE"] # Default to the S3 backend for backward compatibility storage_class = config.get("STORAGE_CLASS", "storages.backends.s3boto.S3BotoStorage") ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _parse_filter(): op = pyparsing.oneOf('! & |') lpar = pyparsing.Literal('(').suppress() rpar = pyparsing.Literal(')').suppress() k = pyparsing.Word(pyparsing.alphanums) # NOTE: We may need to expand on this list, but as this is not a real # LDAP server we should be...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _get_path(self, prefix, override_receipt_id=None): """ Returns the path to a resource with this instance's `receipt_id`. If `override_receipt_id` is given, the path to that resource will be retrieved instead. This allows us to retrieve images submitted in previous attempts (...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _deDuplicate(results): found = dict() deDuped = list() for entry in results: dn = entry.get("dn") if not dn in found: found[dn] = 1 deDuped.append(entry) return deDuped
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _encrypted_user_photo_key_str(self): """ Software Secure needs to have both UserPhoto and PhotoID decrypted in the same manner. So even though this is going to be the same for every request, we're also using RSA encryption to encrypt the AES key for faces. """ ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _invert_results(self, candidates): inverted_candidates = list(self.directory) for candidate in candidates: try: inverted_candidates.remove(candidate) except ValueError: pass return inverted_candidates
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def create_request(self, copy_id_photo_from=None): """ Construct the HTTP request to the photo verification service. Keyword Arguments: copy_id_photo_from (SoftwareSecurePhotoVerification): If provided, re-send the ID photo data from this attempt. This is used for r...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _search_not(self, base, search_filter, candidates=None): # Create empty candidates list as we need to use self.directory for # each search candidates = list() this_filter = list() index = 0 search_filter.remove("!") for condition in search_filter: ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def request_message_txt(self): """ This is the body of the request we send across. This is never actually used in the code, but exists for debugging purposes -- you can call `print attempt.request_message_txt()` on the console and get a readable rendering of the request that woul...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _search_and(self, base, search_filter, candidates=None): # Load the data from the directory, if we aren't passed any if candidates == [] or candidates is None: candidates = self.directory this_filter = list() index = 0 search_filter.remove("&") for condit...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def send_request(self, copy_id_photo_from=None): """ Assembles a submission to Software Secure and sends it via HTTPS. Keyword Arguments: copy_id_photo_from (SoftwareSecurePhotoVerification): If provided, re-send the ID photo data from this attempt. This is used for...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _search_or(self, base, search_filter, candidates=None): # Create empty candidates list as we need to use self.directory for # each search candidates = list() this_filter = list() index = 0 search_filter.remove("|") for condition in search_filter: ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def search(self, search_base=None, search_scope=None, search_filter=None, attributes=None, paged_size=5, size_limit=0, paged_cookie=None): s_filter = list() candidates = list() self.response = list() self.result = dict() try: if isinstan...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def set_deadline(cls, course_key, deadline, is_explicit=False): """ Configure the verification deadline for a course. If `deadline` is `None`, then the course will have no verification deadline. In this case, users will be able to verify for the course at any time. Arg...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def unbind(self): return True
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deadlines_for_courses(cls, course_keys): """ Retrieve verification deadlines for particular courses. Arguments: course_keys (list): List of `CourseKey`s. Returns: dict: Map of course keys to datetimes (verification deadlines) """ all_deadlin...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self): self._calls = CallList() self._server_mock = None self.directory = [] self.exception = None self.reset()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deadline_for_course(cls, course_key): """ Retrieve the verification deadline for a particular course. Arguments: course_key (CourseKey): The identifier for the course. Returns: datetime or None """ try: deadline = cls.objects.get...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def reset(self): self._calls.reset()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def setLDAPDirectory(self, directory=None): if directory is None: self.directory = [] else: try: with open(DIRECTORY, 'w+') as f: f.write(str(directory)) self.directory = directory except OSError as e: ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def set_exception(self, exc=True): self.exception = exc
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _load_data(self, directory): try: with open(directory, 'r') as f: data = f.read() return literal_eval(data) except OSError as e: raise
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def calls(self): return self._calls
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __enter__(self): self.start()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __exit__(self, *args): self.stop() self.reset()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def activate(self, func): evaldict = {'ldap3mock': self, 'func': func} return get_wrapped(func, _wrapper_template, evaldict)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _on_Server(self, host, port, use_ssl, connect_timeout, get_info=None, tls=None): # mangle request packet return "FakeServerObject"
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _on_Connection(self, server, user, password, auto_bind=None, client_strategy=None, authentication=None, check_names=None, auto_referrals=None, receive_timeout=None): """ We need to create a Connection object with methods: ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def unbound_on_Server(host, port, use_ssl, connect_timeout, *a, **kwargs): return self._on_Server(host, port, use_ssl, connect_timeout, *a, **kwargs)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def unbound_on_Connection(server, user, password, auto_bind, client_strategy, authentication, check_names, auto_refe...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def stop(self): self._patcher.stop() self._patcher2.stop() self._server_mock = None
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def get_server_mock(self): return self._server_mock
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def setUp(self): entry_Li = ComputedEntry("Li", -1.90753119) with open(os.path.join(PymatgenTest.TEST_FILES_DIR, "LiTiO2_batt.json")) as f: entries_LTO = json.load(f, cls=MontyDecoder) self.ie_LTO = InsertionElectrode.from_entries(entries_LTO, entry_Li) with open(os.pat...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self): """ Every authenticator has to have a name :param name: """ super().__init__()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def testName(self): plotter = VoltageProfilePlotter(xaxis="frac_x") plotter.add_electrode(self.ie_LTO, "LTO insertion") plotter.add_electrode(self.ce_FF, "FeF3 conversion") self.assertIsNotNone(plotter.get_plot_data(self.ie_LTO)) self.assertIsNotNone(plotter.get_plot_data(self.ce...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def testPlotly(self): plotter = VoltageProfilePlotter(xaxis="frac_x") plotter.add_electrode(self.ie_LTO, "LTO insertion") plotter.add_electrode(self.ce_FF, "FeF3 conversion") fig = plotter.get_plotly_figure() self.assertEqual(fig.layout.xaxis.title.text, "Atomic Fraction of Li") ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _no_ssl_required_on_debug(app, **kwargs): if app.debug or app.testing: os.environ['AUTHLIB_INSECURE_TRANSPORT'] = '1'
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, head): self.head = head self.lsize = 0 while head.next: head = head.next self.lsize += 1 self.m1_idx = None self.m2_idx = None if self.lsize > self._largesize: self.m1_idx = self.lsize / 3 # start from 1/3 ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _getN(self, n): n -= 1 p = self.head while n: p = p.next n -= 1 return p
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def _get(delta, start): p = start while delta: p = p.next delta -= 1 return p.val
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def main(): parser = argparse.ArgumentParser() parser.add_argument("day", help="The day of the results, with format yyyymmdd") args = parser.parse_args() install_autopkgtest_results_formatter() with tempfile.TemporaryDirectory(dir=os.environ.get("HOME")) as temp_dir: clone_results_repo(temp_...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, parent, window): self._parent = parent self._window = window self._application = self._parent._application # create user interface self._container = gtk.VBox(False, 5) self._controls = gtk.HBox(False, 5) separator = gtk.HSeparator() # pack interface self._container.pack_end(separ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def install_autopkgtest_results_formatter(): subprocess.check_call( ["sudo", "snap", "install", "autopkgtest-results-formatter", "--edge"] )
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def can_handle(self, uri): """Returns boolean denoting if specified URI can be handled by this extension""" return False
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def clone_results_repo(dest_dir): subprocess.check_call( ["git", "clone", "https://github.com/elopio/autopkgtest-results.git", dest_dir] )
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def get_container(self): """Return container widget""" return self._container
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def format_results(dest_dir, distros, day): subprocess.check_call( [ "/snap/bin/autopkgtest-results-formatter", "--destination", dest_dir, "--distros", *distros, "--day", day, ] )
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def get_information(self): """Returns information about extension""" icon = None name = None return icon, name
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def commit_and_push(repo_dir, day): subprocess.check_call( ["git", "config", "--global", "user.email", "u1test+m-o@canonical.com"] ) subprocess.check_call(["git", "config", "--global", "user.name", "snappy-m-o"]) subprocess.check_call(["git", "-C", repo_dir, "add", "--all"]) subprocess.chec...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def unmount(self, uri): """Method called by the mount manager for unmounting the selected URI""" pass
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def focus_object(self): """Method called by the mount manager for focusing main object""" pass
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, gan=None, config=None, trainer=None): super().__init__(config=config, gan=gan, trainer=trainer) self.d_grads = None self.g_grads = None
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def main(): # Contingency Table from Wilks (2011) Table 8.3 table = np.array([[50, 91, 71], [47, 2364, 170], [54, 205, 3288]]) mct = MulticlassContingencyTable(table, n_classes=table.shape[0], class_names=np.arange(table.shape[...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def gradients(self, d_grads, g_grads): if self.d_grads is None: self.d_grads = [torch.zeros_like(_g) for _g in d_grads] self.g_grads = [torch.zeros_like(_g) for _g in g_grads]
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, table=None, n_classes=2, class_names=("1", "0")): self.table = table self.n_classes = n_classes self.class_names = class_names if table is None: self.table = np.zeros((self.n_classes, self.n_classes), dtype=int)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __add__(self, other): assert self.n_classes == other.n_classes, "Number of classes does not match" return MulticlassContingencyTable(self.table + other.table, n_classes=self.n_classes, class_names=self.class_names)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def peirce_skill_score(self): """ Multiclass Peirce Skill Score (also Hanssen and Kuipers score, True Skill Score) """ n = float(self.table.sum()) nf = self.table.sum(axis=1) no = self.table.sum(axis=0) correct = float(self.table.trace()) return (correct /...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def gerrity_score(self): """ Gerrity Score, which weights each cell in the contingency table by its observed relative frequency. :return: """ k = self.table.shape[0] n = float(self.table.sum()) p_o = self.table.sum(axis=0) / n p_sum = np.cumsum(p_o)[:-1] ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def heidke_skill_score(self): n = float(self.table.sum()) nf = self.table.sum(axis=1) no = self.table.sum(axis=0) correct = float(self.table.trace()) return (correct / n - (nf * no).sum() / n ** 2) / (1 - (nf * no).sum() / n ** 2)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def git_checkout(git_url, git_branch=None, git_tag=None, git_hash=None): git_dst = tempfile.mkdtemp() g = GitManager(url=git_url, git_dst=git_dst, git_branch=git_branch, git_tag=git_tag, git_hash=git_hash) g.run() shutil.rmtree(git_dst)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_git_tag(): """ Test checkout w/ Tag """ git_checkout(git_url='https://github.com/voltgrid/voltgrid-pie.git', git_branch=None, git_tag='v0.1.0')
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_git_branch(): """ Test checkout w/ Branch """ git_checkout(git_url='https://github.com/voltgrid/voltgrid-pie.git', git_branch='master', git_tag=None)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_make_gym_venv_nostack(name, num_envs, state_shape, reward_scale): seed = 0 frame_op = None frame_op_len = None venv = make_gym_venv(name, num_envs, seed, frame_op=frame_op, frame_op_len=frame_op_len, reward_scale=reward_scale) venv.reset() for i in range(5): state, reward, done,...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def compute_rbf_kernel_matrix(X): """Compute the RBF kernel matrix with sigma2 as the median pairwise distance. """ sigma2 = np.median(pairwise_distances(X, metric='euclidean'))**2 K = pairwise_kernels(X, X, metric='rbf', gamma=1.0/sigma2, n_jobs=-1) return K
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_make_gym_concat(name, num_envs, state_shape, reward_scale): seed = 0 frame_op = 'concat' # used for image, or for concat vector frame_op_len = 4 venv = make_gym_venv(name, num_envs, seed, frame_op=frame_op, frame_op_len=frame_op_len, reward_scale=reward_scale) venv.reset() for i in ran...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def balanced_accuracy_scoring(clf, X, y): """Scoring function that computes the balanced accuracy to be used internally in the cross-validation procedure. """ y_pred = clf.predict(X) conf_mat = confusion_matrix(y, y_pred) bal_acc = 0. for i in range(len(conf_mat)): bal_acc += (float(...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_make_gym_stack(name, num_envs, state_shape, reward_scale): seed = 0 frame_op = 'stack' # used for rnn frame_op_len = 4 venv = make_gym_venv(name, num_envs, seed, frame_op=frame_op, frame_op_len=frame_op_len, reward_scale=reward_scale) venv.reset() for i in range(5): state, rewa...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def compute_svm_cv(K, y, C=100.0, n_folds=5, scoring=balanced_accuracy_scoring): """Compute cross-validated score of SVM with given precomputed kernel. """ cv = StratifiedKFold(y, n_folds=n_folds) clf = SVC(C=C, kernel='precomputed', class_weight='auto') scores = cross_val_score(c...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def compute_svm_subjects(K, y, n_folds=5): """ """ cv = KFold(len(K)/2, n_folds) scores = np.zeros(n_folds) for i, (train, test) in enumerate(cv): train_ids = np.concatenate((train, len(K)/2+train)) test_ids = np.concatenate((test, len(K)/2+test)) clf = SVC(kernel='precompute...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def permutation_subjects(y): """Permute class labels of Contextual Disorder dataset. """ y_perm = np.random.randint(0, 2, len(y)/2) y_perm = np.concatenate((y_perm, np.logical_not(y_perm).astype(int))) return y_perm
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def permutation_subjects_ktst(y): """Permute class labels of Contextual Disorder dataset for KTST. """ yp = np.random.randint(0, 2, len(y)/2) yp = np.concatenate((yp, np.logical_not(yp).astype(int))) y_perm = np.arange(len(y)) for i in range(len(y)/2): if yp[i] == 1: y_perm[i...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def compute_svm_score_nestedCV(K, y, n_folds, scoring=balanced_accuracy_scoring, random_state=None, param_grid=[{'C': np.logspace(-5, 5, 25)}]): """Compute cross-validated score of SVM using precomputed kernel. """ ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def apply_svm(K, y, n_folds=5, iterations=10000, subjects=False, verbose=True, random_state=None): """ Compute the balanced accuracy, its null distribution and the p-value. Parameters: ---------- K: array-like Kernel matrix y: array_like class labels cv: Number...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def apply_ktst(K, y, iterations=10000, subjects=False, verbose=True): """ Compute MMD^2_u, its null distribution and the p-value of the kernel two-sample test. Parameters: ---------- K: array-like Kernel matrix y: array_like class labels verbose: bool Verbosity ...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_login(self, mock_login_with_token, mock_input, mock_open_url): quilt3.login() url = quilt3.session.get_registry_url() mock_open_url.assert_called_with(f'{url}/login') mock_login_with_token.assert_called_with('123456')
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def decode(value): if isinstance(value, bytes): value = value.decode(errors="surrogateescape") for char in ("\\", "\n", "\t"): value = value.replace( char.encode(encoding="unicode-escape").decode(), char ) return value
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def test_login_with_token(self, mock_save_credentials, mock_save_auth): url = quilt3.session.get_registry_url() mock_auth = dict( refresh_token='refresh-token', access_token='access-token', expires_at=123456789 ) self.requests_mock.add( r...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def encode(value): if isinstance(value, bytes): value = value.decode(errors="surrogateescape") for char in ("\\", "\n", "\t"): value = value.replace( char, char.encode(encoding="unicode-escape").decode() ) return value
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def format_date(date): return date.replace(tzinfo=datetime.timezone.utc, microsecond=0).isoformat()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deserialize(self, value): """Cast raw string to appropriate type.""" return decode(value)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def serialize(self, value, display=False): """Convert value back to string for saving.""" if value is None: return "" return str(value)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deserialize(self, value): return DeprecatedValue()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def serialize(self, value, display=False): return DeprecatedValue()
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, optional=False, choices=None): self._required = not optional self._choices = choices
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deserialize(self, value): value = decode(value).strip() validators.validate_required(value, self._required) if not value: return None validators.validate_choice(value, self._choices) return value
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def serialize(self, value, display=False): if value is None: return "" return encode(value)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, optional=False, choices=None): self._required = not optional self._choices = None # Choices doesn't make sense for secrets
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def serialize(self, value, display=False): if value is not None and display: return "********" return super().serialize(value, display)
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__( self, minimum=None, maximum=None, choices=None, optional=False ): self._required = not optional self._minimum = minimum self._maximum = maximum self._choices = choices
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deserialize(self, value): value = decode(value) validators.validate_required(value, self._required) if not value: return None value = int(value) validators.validate_choice(value, self._choices) validators.validate_minimum(value, self._minimum) vali...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def __init__(self, optional=False): self._required = not optional
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def deserialize(self, value): value = decode(value) validators.validate_required(value, self._required) if not value: return None if value.lower() in self.true_values: return True elif value.lower() in self.false_values: return False ra...
def unicode_test(seg_instance, seg_str): seg_gen_str = str(seg_instance) self.assertEqual(len(seg_gen_str), 240) self.assertEqual(len(seg_str), 240) self.assertEqual(seg_gen_str, seg_str)
def serialize(self, value, display=False): if value is True: return "true" elif value in (False, None): return "false" else: raise ValueError(f"{value!r} is not a boolean")