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def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def EVT_LEFT_DOWN(event): global _mpos _mpos = event.Position
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _kindpatsalwaysmatch(kindpats): """ "Checks whether the kindspats match everything, as e.g. 'relpath:.' does. """ for kind, pat, source in kindpats: # TODO: update me? if pat != "" or kind not in ["relpath", "glob"]: return False return True
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def EVT_LEFT_UP(event): global _mpos _mpos = None
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def normalize(patterns, default, root, cwd, auditor, warn): kp = _donormalize(patterns, default, root, cwd, auditor, warn) kindpats = [] for kind, pats, source in kp: if kind not in ("re", "relre"): # regex can't be normalized p = pats ...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def EVT_MOTION(event): global _mpos if event.LeftIsDown(): if _mpos: (x,y),(mx,my) = event.Position,_mpos rotangles[0] += y-my rotangles[1] += x-mx refresh() _mpos = event.Position
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def exact(root, cwd, files, badfn=None): return exactmatcher(root, cwd, files, badfn=badfn)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def EVT_MOUSEWHEEL(event): global zoomdist dy = event.WheelRotation zoomdist *= np.power(0.95, -dy) refresh()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def always(root, cwd): return alwaysmatcher(root, cwd)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def mouse_rotate(xAngle, yAngle, zAngle): glRotatef(xAngle, 1.0, 0.0, 0.0); glRotatef(yAngle, 0.0, 1.0, 0.0); glRotatef(zAngle, 0.0, 0.0, 1.0);
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def never(root, cwd): return nevermatcher(root, cwd)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def playcolors(): while 1: global clearcolor clearcolor = [np.random.random(),0,0,0] time.sleep(0.1) refresh()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def union(matches, root, cwd): """Union a list of matchers. If the list is empty, return nevermatcher. If the list only contains one non-None value, return that matcher. Otherwise return a union matcher. """ matches = list(filter(None, matches)) if len(matches) == 0: return nevermat...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def update(dt=0): global projpts, rgb, depth depth,_ = freenect.sync_get_depth() rgb,_ = freenect.sync_get_video() q = depth X,Y = np.meshgrid(range(640),range(480)) # YOU CAN CHANGE THIS AND RERUN THE PROGRAM! # Point cloud downsampling d = 4 projpts = calibkinect.depth2xyzuv(q[::d,::d],X[::d,::d],Y[...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def badmatch(match, badfn): """Make a copy of the given matcher, replacing its bad method with the given one. """ m = copy.copy(match) m.bad = badfn return m
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def update_join(): update_on() try: _thread.join() except: update_off()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _donormalize(patterns, default, root, cwd, auditor, warn): """Convert 'kind:pat' from the patterns list to tuples with kind and normalized and rooted patterns and with listfiles expanded.""" kindpats = [] for kind, pat in [_patsplit(p, default) for p in patterns]: if kind in cwdrelativepatte...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def update_on(): global _updating if not '_updating' in globals(): _updating = False if _updating: return
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _testrefastpath(repat): """Test if a re pattern can use fast path. That is, for every "$A/$B" path the pattern matches, "$A" must also be matched, Return True if we're sure it is. Return False otherwise. """ # XXX: It's very hard to implement this. These are what need to be # supported...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _run(): while _updating: update()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _globpatsplit(pat): """Split a glob pattern. Return a list. A naive version is "path.split("/")". This function handles more cases, like "{*,{a,b}*/*}". >>> _globpatsplit("*/**/x/{a,b/c}") ['*', '**', 'x', '{a,b/c}'] """ result = [] buf = "" parentheses = 0 for ch in pat: ...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def update_off(): global _updating _updating = False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, *args, **kwargs): # If True, avoid entering subdirectories, and match everything recursively, # unconditionally. self.matchrecursive = False # If True, avoid entering subdirectories, and return "unsure" for # everything. This is set to True when complex re patt...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def loopcv(): import cv while 1: cv.ShowImage('hi',get_depth().astype(np.uint8)) cv.WaitKey(10)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def insert(self, path, matchrecursive=True, globpats=None, repats=None): """Insert a directory path to this tree. If matchrecursive is True, mark the directory as unconditionally include files and subdirs recursively. If globpats or repats are specified, append them to the patterns bei...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, path): """Similar to matcher.visitdir""" path = normalizerootdir(path, "visitdir") if self.matchrecursive: return "all" elif self.unsurerecursive: return True elif path == "": return True if self._kindpats and self._...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _compiledpats(self): pat, matchfunc = _buildregexmatch(self._kindpats, "") return matchfunc
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _compileddirpats(self): pat, matchfunc = _buildregexmatch( [("glob", p, "") for p in self._globdirpats], "$" ) return matchfunc
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _split(self, path): if "/" in path: subdir, rest = path.split("/", 1) else: subdir, rest = path, "" if not subdir: raise error.ProgrammingError("path cannot be absolute") return subdir, rest
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _remainingpats(pat, prefix): """list of patterns with prefix stripped >>> _remainingpats("a/b/c", "") ['a/b/c'] >>> _remainingpats("a/b/c", "a") ['b/c'] >>> _remainingpats("a/b/c", "a/b") ['c'] >>> _remainingpats("a/b/c", "a/b/c") [] >>> _remainingpats("", "") [] """...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _buildvisitdir(kindpats): """Try to build an efficient visitdir function Return a visitdir function if it's built. Otherwise return None if there are unsupported patterns. >>> _buildvisitdir([('include', 'foo', '')]) >>> _buildvisitdir([('relglob', 'foo', '')]) >>> t = _buildvisitdir([ ...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, badfn=None, relativeuipath=True): self._root = root self._cwd = cwd if badfn is not None: self.bad = badfn self._relativeuipath = relativeuipath
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<%s>" % self.__class__.__name__
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __call__(self, fn): return self.matchfn(fn)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __iter__(self): for f in self._files: yield f
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def bad(self, f, msg): """Callback from dirstate.walk for each explicit file that can't be found/accessed, with an error message."""
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def abs(self, f): """Convert a repo path back to path that is relative to the root of the matcher.""" return f
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def rel(self, f): """Convert repo path back to path that is relative to cwd of matcher.""" return util.pathto(self._root, self._cwd, f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def uipath(self, f): """Convert repo path to a display path. If patterns or -I/-X were used to create this matcher, the display path will be relative to cwd. Otherwise it is relative to the root of the repo.""" return (self._relativeuipath and self.rel(f)) or self.abs(f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def files(self): """Explicitly listed files or patterns or roots: if no patterns or .always(): empty list, if exact: list exact files, if not .anypats(): list all files and dirs, else: optimal roots""" return self._files
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _fileset(self): return set(self._files)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def exact(self, f): """Returns True if f is in .files().""" return f in self._fileset
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): return False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): """Decides whether a directory should be visited based on whether it has potential matches in it or one of its subdirectories. This is based on the match's primary, included, and excluded patterns. Returns the string 'all' if the given directory and all subdirec...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def always(self): """Matcher will match everything and .files() will be empty -- optimization might be possible.""" return False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def isexact(self): """Matcher will match exactly the list of files in .files() -- optimization might be possible.""" return False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def prefix(self): """Matcher will match the paths in .files() recursively -- optimization might be possible.""" return False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def anypats(self): """None of .always(), .isexact(), and .prefix() is true -- optimizations will be difficult.""" return not self.always() and not self.isexact() and not self.prefix()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, badfn=None, relativeuipath=False): super(alwaysmatcher, self).__init__( root, cwd, badfn, relativeuipath=relativeuipath )
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def always(self): return True
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): return True
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): return "all"
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<alwaysmatcher>"
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, badfn=None): super(nevermatcher, self).__init__(root, cwd, badfn)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def isexact(self): return True
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): return False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<nevermatcher>"
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, badfn=None, gitignorepaths=None): super(gitignorematcher, self).__init__(root, cwd, badfn) gitignorepaths = gitignorepaths or [] self._matcher = pathmatcher.gitignorematcher(root, gitignorepaths)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): # XXX: is_dir is set to True here for performance. # It should be set to whether "f" is actually a directory or not. return self._matcher.match_relative(f, True)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def explain(self, f): return self._matcher.explain(f, True)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): dir = normalizerootdir(dir, "visitdir") matched = self._matcher.match_relative(dir, True) if matched: # Everything in the directory is selected (ignored) return "all" else: # Not sure return True
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<gitignorematcher>"
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, badfn=None, rules=[]): super(treematcher, self).__init__(root, cwd, badfn) rules = list(rules) self._matcher = pathmatcher.treematcher(rules) self._rules = rules
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): return self._matcher.matches(f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): matched = self._matcher.match_recursive(dir) if matched is None: return True elif matched is True: return "all" else: assert matched is False return False
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<treematcher rules=%r>" % self._rules
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def normalizerootdir(dir, funcname): if dir == ".": util.nouideprecwarn( "match.%s() no longer accepts '.', use '' instead." % funcname, "20190805" ) return "" return dir
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _kindpatstoglobs(kindpats, recursive=False): """Attempt to convert 'kindpats' to glob patterns that can be used in a treematcher. kindpats should be already normalized to be relative to repo root. If recursive is True, `glob:a*` will match both `a1/b` and `a1`, otherwise `glob:a*` will only ma...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _makeglobrecursive(pat): """Make a glob pattern recursive by appending "/**" to it""" if pat.endswith("/") or not pat: return pat + "**" else: return pat + "/**"
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _convertretoglobs(repat): """Attempt to convert a regular expression pattern to glob patterns. A single regular expression pattern might be converted into multiple glob patterns. Return None if conversion is unsupported. >>> _convertretoglobs("abc*") is None True >>> _convertretoglobs...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, kindpats, ctx=None, badfn=None): super(patternmatcher, self).__init__(root, cwd, badfn) # kindpats are already normalized to be relative to repo-root. # Can we use tree matcher? rules = _kindpatstoglobs(kindpats, recursive=False) fallback = True ...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _dirs(self): return set(util.dirs(self._fileset))
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): dir = normalizerootdir(dir, "visitdir") if self._prefix and dir in self._fileset: return "all" if not self._prefix: return True return ( dir in self._fileset or dir in self._dirs or any(parentdir in self...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def prefix(self): return self._prefix
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<patternmatcher patterns=%r>" % self._pats
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, kindpats, ctx=None, badfn=None): super(includematcher, self).__init__(root, cwd, badfn) # Can we use tree matcher? rules = _kindpatstoglobs(kindpats, recursive=True) fallback = True if rules is not None: try: matcher = tr...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): dir = normalizerootdir(dir, "visitdir") if self._prefix and dir in self._roots: return "all" return ( dir in self._roots or dir in self._dirs or any(parentdir in self._roots for parentdir in util.finddirs(dir)) )
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<includematcher includes=%r>" % self._pats
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, root, cwd, files, badfn=None): super(exactmatcher, self).__init__(root, cwd, badfn) if isinstance(files, list): self._files = files else: self._files = list(files)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): dir = normalizerootdir(dir, "visitdir") return dir in self._dirs
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<exactmatcher files=%r>" % self._files
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, m1, m2): super(differencematcher, self).__init__(m1._root, m1._cwd) self._m1 = m1 self._m2 = m2 self.bad = m1.bad self.traversedir = m1.traversedir
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): return self._m1(f) and (not self._m2(f) or self._m1.exact(f))
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _files(self): if self.isexact(): return [f for f in self._m1.files() if self(f)] # If m1 is not an exact matcher, we can't easily figure out the set of # files, because its files() are not always files. For example, if # m1 is "path:dir" and m2 is "rootfileins:.", we don'...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): dir = normalizerootdir(dir, "visitdir") if not self._m2.visitdir(dir): return self._m1.visitdir(dir) if self._m2.visitdir(dir) == "all": # There's a bug here: If m1 matches file 'dir/file' and m2 excludes # 'dir' (recursively), we sho...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def isexact(self): return self._m1.isexact()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<differencematcher m1=%r, m2=%r>" % (self._m1, self._m2)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def intersectmatchers(m1, m2): """Composes two matchers by matching if both of them match. The second matcher's non-matching-attributes (root, cwd, bad, traversedir) are ignored. """ if m1 is None or m2 is None: return m1 or m2 if m1.always(): m = copy.copy(m2) # TODO: C...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, m1, m2): super(intersectionmatcher, self).__init__(m1._root, m1._cwd) self._m1 = m1 self._m2 = m2 self.bad = m1.bad self.traversedir = m1.traversedir
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def _files(self): if self.isexact(): m1, m2 = self._m1, self._m2 if not m1.isexact(): m1, m2 = m2, m1 return [f for f in m1.files() if m2(f)] # It neither m1 nor m2 is an exact matcher, we can't easily intersect # the set of files, because thei...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): return self._m1(f) and self._m2(f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def visitdir(self, dir): dir = normalizerootdir(dir, "visitdir") visit1 = self._m1.visitdir(dir) if visit1 == "all": return self._m2.visitdir(dir) # bool() because visit1=True + visit2='all' should not be 'all' return bool(visit1 and self._m2.visitdir(dir))
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def always(self): return self._m1.always() and self._m2.always()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def isexact(self): return self._m1.isexact() or self._m2.isexact()
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __repr__(self): return "<intersectionmatcher m1=%r, m2=%r>" % (self._m1, self._m2)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def __init__(self, path, matcher): super(subdirmatcher, self).__init__(matcher._root, matcher._cwd) self._path = path self._matcher = matcher self._always = matcher.always() self._files = [ f[len(path) + 1 :] for f in matcher._files if f.startswith(path + "/") ...
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def bad(self, f, msg): self._matcher.bad(self._path + "/" + f, msg)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def abs(self, f): return self._matcher.abs(self._path + "/" + f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def rel(self, f): return self._matcher.rel(self._path + "/" + f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def uipath(self, f): return self._matcher.uipath(self._path + "/" + f)
def set_contains_both_oxygen_and_nitrogen(self, bt): """Examine `bt` and set self._contains_both_oxygen_and_nitrogen. Args: bt: BondTopology """ self._contains_both_oxygen_and_nitrogen = False oxygen_count = 0 nitrogen_count = 0 for atom in bt.atoms: if atom in [ datas...
def matchfn(self, f): # Some information is lost in the superclass's constructor, so we # can not accurately create the matching function for the subdirectory # from the inputs. Instead, we override matchfn() and visitdir() to # call the original matcher with the subdirectory path prepen...