input stringlengths 11 7.65k | target stringlengths 22 8.26k |
|---|---|
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def create_texture():
global rgbtex
rgbtex = glGenTextures(1)
glBindTexture(TEXTURE_TARGET, rgbtex)
glTexImage2D(TEXTURE_TARGET,0,GL_RGB,640,480,0,GL_RGB,GL_UNSIGNED_BYTE,None) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _expandsubinclude(kindpats, root):
"""Returns the list of subinclude matcher args and the kindpats without the
subincludes in it."""
relmatchers = []
other = []
for kind, pat, source in kindpats:
if kind == "subinclude":
sourceroot = pathutil.dirname(util.normpath(source))
... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def EVT_LEFT_DOWN(event):
global _mpos
_mpos = event.Position |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _kindpatsalwaysmatch(kindpats):
""" "Checks whether the kindspats match everything, as e.g.
'relpath:.' does.
"""
for kind, pat, source in kindpats:
# TODO: update me?
if pat != "" or kind not in ["relpath", "glob"]:
return False
return True |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def EVT_LEFT_UP(event):
global _mpos
_mpos = None |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def normalize(patterns, default, root, cwd, auditor, warn):
kp = _donormalize(patterns, default, root, cwd, auditor, warn)
kindpats = []
for kind, pats, source in kp:
if kind not in ("re", "relre"): # regex can't be normalized
p = pats
... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def EVT_MOTION(event):
global _mpos
if event.LeftIsDown():
if _mpos:
(x,y),(mx,my) = event.Position,_mpos
rotangles[0] += y-my
rotangles[1] += x-mx
refresh()
_mpos = event.Position |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def exact(root, cwd, files, badfn=None):
return exactmatcher(root, cwd, files, badfn=badfn) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def EVT_MOUSEWHEEL(event):
global zoomdist
dy = event.WheelRotation
zoomdist *= np.power(0.95, -dy)
refresh() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def always(root, cwd):
return alwaysmatcher(root, cwd) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def mouse_rotate(xAngle, yAngle, zAngle):
glRotatef(xAngle, 1.0, 0.0, 0.0);
glRotatef(yAngle, 0.0, 1.0, 0.0);
glRotatef(zAngle, 0.0, 0.0, 1.0); |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def never(root, cwd):
return nevermatcher(root, cwd) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def playcolors():
while 1:
global clearcolor
clearcolor = [np.random.random(),0,0,0]
time.sleep(0.1)
refresh() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def union(matches, root, cwd):
"""Union a list of matchers.
If the list is empty, return nevermatcher.
If the list only contains one non-None value, return that matcher.
Otherwise return a union matcher.
"""
matches = list(filter(None, matches))
if len(matches) == 0:
return nevermat... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def update(dt=0):
global projpts, rgb, depth
depth,_ = freenect.sync_get_depth()
rgb,_ = freenect.sync_get_video()
q = depth
X,Y = np.meshgrid(range(640),range(480))
# YOU CAN CHANGE THIS AND RERUN THE PROGRAM!
# Point cloud downsampling
d = 4
projpts = calibkinect.depth2xyzuv(q[::d,::d],X[::d,::d],Y[... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def badmatch(match, badfn):
"""Make a copy of the given matcher, replacing its bad method with the given
one.
"""
m = copy.copy(match)
m.bad = badfn
return m |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def update_join():
update_on()
try:
_thread.join()
except:
update_off() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _donormalize(patterns, default, root, cwd, auditor, warn):
"""Convert 'kind:pat' from the patterns list to tuples with kind and
normalized and rooted patterns and with listfiles expanded."""
kindpats = []
for kind, pat in [_patsplit(p, default) for p in patterns]:
if kind in cwdrelativepatte... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def update_on():
global _updating
if not '_updating' in globals(): _updating = False
if _updating: return |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _testrefastpath(repat):
"""Test if a re pattern can use fast path.
That is, for every "$A/$B" path the pattern matches, "$A" must also be
matched,
Return True if we're sure it is. Return False otherwise.
"""
# XXX: It's very hard to implement this. These are what need to be
# supported... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _run():
while _updating:
update() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _globpatsplit(pat):
"""Split a glob pattern. Return a list.
A naive version is "path.split("/")". This function handles more cases, like
"{*,{a,b}*/*}".
>>> _globpatsplit("*/**/x/{a,b/c}")
['*', '**', 'x', '{a,b/c}']
"""
result = []
buf = ""
parentheses = 0
for ch in pat:
... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def update_off():
global _updating
_updating = False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, *args, **kwargs):
# If True, avoid entering subdirectories, and match everything recursively,
# unconditionally.
self.matchrecursive = False
# If True, avoid entering subdirectories, and return "unsure" for
# everything. This is set to True when complex re patt... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def loopcv():
import cv
while 1:
cv.ShowImage('hi',get_depth().astype(np.uint8))
cv.WaitKey(10) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def insert(self, path, matchrecursive=True, globpats=None, repats=None):
"""Insert a directory path to this tree.
If matchrecursive is True, mark the directory as unconditionally
include files and subdirs recursively.
If globpats or repats are specified, append them to the patterns bei... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, path):
"""Similar to matcher.visitdir"""
path = normalizerootdir(path, "visitdir")
if self.matchrecursive:
return "all"
elif self.unsurerecursive:
return True
elif path == "":
return True
if self._kindpats and self._... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _compiledpats(self):
pat, matchfunc = _buildregexmatch(self._kindpats, "")
return matchfunc |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _compileddirpats(self):
pat, matchfunc = _buildregexmatch(
[("glob", p, "") for p in self._globdirpats], "$"
)
return matchfunc |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _split(self, path):
if "/" in path:
subdir, rest = path.split("/", 1)
else:
subdir, rest = path, ""
if not subdir:
raise error.ProgrammingError("path cannot be absolute")
return subdir, rest |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _remainingpats(pat, prefix):
"""list of patterns with prefix stripped
>>> _remainingpats("a/b/c", "")
['a/b/c']
>>> _remainingpats("a/b/c", "a")
['b/c']
>>> _remainingpats("a/b/c", "a/b")
['c']
>>> _remainingpats("a/b/c", "a/b/c")
[]
>>> _remainingpats("", "")
[]
"""... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _buildvisitdir(kindpats):
"""Try to build an efficient visitdir function
Return a visitdir function if it's built. Otherwise return None
if there are unsupported patterns.
>>> _buildvisitdir([('include', 'foo', '')])
>>> _buildvisitdir([('relglob', 'foo', '')])
>>> t = _buildvisitdir([
... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, badfn=None, relativeuipath=True):
self._root = root
self._cwd = cwd
if badfn is not None:
self.bad = badfn
self._relativeuipath = relativeuipath |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<%s>" % self.__class__.__name__ |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __call__(self, fn):
return self.matchfn(fn) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __iter__(self):
for f in self._files:
yield f |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def bad(self, f, msg):
"""Callback from dirstate.walk for each explicit file that can't be
found/accessed, with an error message.""" |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def abs(self, f):
"""Convert a repo path back to path that is relative to the root of the
matcher."""
return f |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def rel(self, f):
"""Convert repo path back to path that is relative to cwd of matcher."""
return util.pathto(self._root, self._cwd, f) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def uipath(self, f):
"""Convert repo path to a display path. If patterns or -I/-X were used
to create this matcher, the display path will be relative to cwd.
Otherwise it is relative to the root of the repo."""
return (self._relativeuipath and self.rel(f)) or self.abs(f) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def files(self):
"""Explicitly listed files or patterns or roots:
if no patterns or .always(): empty list,
if exact: list exact files,
if not .anypats(): list all files and dirs,
else: optimal roots"""
return self._files |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _fileset(self):
return set(self._files) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def exact(self, f):
"""Returns True if f is in .files()."""
return f in self._fileset |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def matchfn(self, f):
return False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
"""Decides whether a directory should be visited based on whether it
has potential matches in it or one of its subdirectories. This is
based on the match's primary, included, and excluded patterns.
Returns the string 'all' if the given directory and all subdirec... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def always(self):
"""Matcher will match everything and .files() will be empty --
optimization might be possible."""
return False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def isexact(self):
"""Matcher will match exactly the list of files in .files() --
optimization might be possible."""
return False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def prefix(self):
"""Matcher will match the paths in .files() recursively --
optimization might be possible."""
return False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def anypats(self):
"""None of .always(), .isexact(), and .prefix() is true --
optimizations will be difficult."""
return not self.always() and not self.isexact() and not self.prefix() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, badfn=None, relativeuipath=False):
super(alwaysmatcher, self).__init__(
root, cwd, badfn, relativeuipath=relativeuipath
) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def always(self):
return True |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def matchfn(self, f):
return True |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
return "all" |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<alwaysmatcher>" |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, badfn=None):
super(nevermatcher, self).__init__(root, cwd, badfn) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def isexact(self):
return True |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
return False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<nevermatcher>" |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, badfn=None, gitignorepaths=None):
super(gitignorematcher, self).__init__(root, cwd, badfn)
gitignorepaths = gitignorepaths or []
self._matcher = pathmatcher.gitignorematcher(root, gitignorepaths) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def matchfn(self, f):
# XXX: is_dir is set to True here for performance.
# It should be set to whether "f" is actually a directory or not.
return self._matcher.match_relative(f, True) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def explain(self, f):
return self._matcher.explain(f, True) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
dir = normalizerootdir(dir, "visitdir")
matched = self._matcher.match_relative(dir, True)
if matched:
# Everything in the directory is selected (ignored)
return "all"
else:
# Not sure
return True |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<gitignorematcher>" |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, badfn=None, rules=[]):
super(treematcher, self).__init__(root, cwd, badfn)
rules = list(rules)
self._matcher = pathmatcher.treematcher(rules)
self._rules = rules |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def matchfn(self, f):
return self._matcher.matches(f) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
matched = self._matcher.match_recursive(dir)
if matched is None:
return True
elif matched is True:
return "all"
else:
assert matched is False
return False |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<treematcher rules=%r>" % self._rules |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def normalizerootdir(dir, funcname):
if dir == ".":
util.nouideprecwarn(
"match.%s() no longer accepts '.', use '' instead." % funcname, "20190805"
)
return ""
return dir |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _kindpatstoglobs(kindpats, recursive=False):
"""Attempt to convert 'kindpats' to glob patterns that can be used in a
treematcher.
kindpats should be already normalized to be relative to repo root.
If recursive is True, `glob:a*` will match both `a1/b` and `a1`, otherwise
`glob:a*` will only ma... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _makeglobrecursive(pat):
"""Make a glob pattern recursive by appending "/**" to it"""
if pat.endswith("/") or not pat:
return pat + "**"
else:
return pat + "/**" |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _convertretoglobs(repat):
"""Attempt to convert a regular expression pattern to glob patterns.
A single regular expression pattern might be converted into multiple
glob patterns.
Return None if conversion is unsupported.
>>> _convertretoglobs("abc*") is None
True
>>> _convertretoglobs... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, kindpats, ctx=None, badfn=None):
super(patternmatcher, self).__init__(root, cwd, badfn)
# kindpats are already normalized to be relative to repo-root.
# Can we use tree matcher?
rules = _kindpatstoglobs(kindpats, recursive=False)
fallback = True
... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _dirs(self):
return set(util.dirs(self._fileset)) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
dir = normalizerootdir(dir, "visitdir")
if self._prefix and dir in self._fileset:
return "all"
if not self._prefix:
return True
return (
dir in self._fileset
or dir in self._dirs
or any(parentdir in self... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def prefix(self):
return self._prefix |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<patternmatcher patterns=%r>" % self._pats |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, kindpats, ctx=None, badfn=None):
super(includematcher, self).__init__(root, cwd, badfn)
# Can we use tree matcher?
rules = _kindpatstoglobs(kindpats, recursive=True)
fallback = True
if rules is not None:
try:
matcher = tr... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
dir = normalizerootdir(dir, "visitdir")
if self._prefix and dir in self._roots:
return "all"
return (
dir in self._roots
or dir in self._dirs
or any(parentdir in self._roots for parentdir in util.finddirs(dir))
) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<includematcher includes=%r>" % self._pats |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, root, cwd, files, badfn=None):
super(exactmatcher, self).__init__(root, cwd, badfn)
if isinstance(files, list):
self._files = files
else:
self._files = list(files) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
dir = normalizerootdir(dir, "visitdir")
return dir in self._dirs |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<exactmatcher files=%r>" % self._files |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, m1, m2):
super(differencematcher, self).__init__(m1._root, m1._cwd)
self._m1 = m1
self._m2 = m2
self.bad = m1.bad
self.traversedir = m1.traversedir |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def matchfn(self, f):
return self._m1(f) and (not self._m2(f) or self._m1.exact(f)) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _files(self):
if self.isexact():
return [f for f in self._m1.files() if self(f)]
# If m1 is not an exact matcher, we can't easily figure out the set of
# files, because its files() are not always files. For example, if
# m1 is "path:dir" and m2 is "rootfileins:.", we don'... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
dir = normalizerootdir(dir, "visitdir")
if not self._m2.visitdir(dir):
return self._m1.visitdir(dir)
if self._m2.visitdir(dir) == "all":
# There's a bug here: If m1 matches file 'dir/file' and m2 excludes
# 'dir' (recursively), we sho... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def isexact(self):
return self._m1.isexact() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<differencematcher m1=%r, m2=%r>" % (self._m1, self._m2) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def intersectmatchers(m1, m2):
"""Composes two matchers by matching if both of them match.
The second matcher's non-matching-attributes (root, cwd, bad, traversedir)
are ignored.
"""
if m1 is None or m2 is None:
return m1 or m2
if m1.always():
m = copy.copy(m2)
# TODO: C... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, m1, m2):
super(intersectionmatcher, self).__init__(m1._root, m1._cwd)
self._m1 = m1
self._m2 = m2
self.bad = m1.bad
self.traversedir = m1.traversedir |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def _files(self):
if self.isexact():
m1, m2 = self._m1, self._m2
if not m1.isexact():
m1, m2 = m2, m1
return [f for f in m1.files() if m2(f)]
# It neither m1 nor m2 is an exact matcher, we can't easily intersect
# the set of files, because thei... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def matchfn(self, f):
return self._m1(f) and self._m2(f) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def visitdir(self, dir):
dir = normalizerootdir(dir, "visitdir")
visit1 = self._m1.visitdir(dir)
if visit1 == "all":
return self._m2.visitdir(dir)
# bool() because visit1=True + visit2='all' should not be 'all'
return bool(visit1 and self._m2.visitdir(dir)) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def always(self):
return self._m1.always() and self._m2.always() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def isexact(self):
return self._m1.isexact() or self._m2.isexact() |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __repr__(self):
return "<intersectionmatcher m1=%r, m2=%r>" % (self._m1, self._m2) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def __init__(self, path, matcher):
super(subdirmatcher, self).__init__(matcher._root, matcher._cwd)
self._path = path
self._matcher = matcher
self._always = matcher.always()
self._files = [
f[len(path) + 1 :] for f in matcher._files if f.startswith(path + "/")
... |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def bad(self, f, msg):
self._matcher.bad(self._path + "/" + f, msg) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def abs(self, f):
return self._matcher.abs(self._path + "/" + f) |
def _initialize(self):
"""Make the molecule ready for adding bonds between heavy atoms."""
self._current_bonds_attached = np.copy(self._bonds_with_hydrogens_attached) | def rel(self, f):
return self._matcher.rel(self._path + "/" + f) |
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