input stringlengths 11 7.65k | target stringlengths 22 8.26k |
|---|---|
def foo(x, y):
... | def upload_face_image(self, img):
raise NotImplementedError |
def foo(x, y):
... | def set_directory(self, directory):
self.directory = directory |
def foo(x, y):
... | def upload_photo_id_image(self, img):
raise NotImplementedError |
def foo(x, y):
... | def _find_user(self, dn):
return next(i for (i, d) in enumerate(self.directory) if d["dn"] == dn) |
def foo(x, y):
... | def mark_ready(self):
"""
Mark that the user data in this attempt is correct. In order to
succeed, the user must have uploaded the necessary images
(`face_image_url`, `photo_id_image_url`). This method will also copy
their name from their user profile. Prior to marking it ready, ... |
def foo(x, y):
... | def approve(self, user_id=None, service=""):
"""
Approve this attempt. `user_id`
Valid attempt statuses when calling this method:
`submitted`, `approved`, `denied`
Status after method completes: `approved`
Other fields that will be set by this method:
`... |
def foo(x, y):
... | def bind(self, read_server_info=True):
return self.bound |
def foo(x, y):
... | def deny(self,
error_msg,
error_code="",
reviewing_user=None,
reviewing_service=""):
"""
Deny this attempt.
Valid attempt statuses when calling this method:
`submitted`, `approved`, `denied`
Status after method completes: ... |
def foo(x, y):
... | def start_tls(self, read_server_info=True):
self.start_tls_called = True |
def foo(x, y):
... | def system_error(self,
error_msg,
error_code="",
reviewing_user=None,
reviewing_service=""):
"""
Mark that this attempt could not be completed because of a system error.
Status should be moved to `must_retry`. Fo... |
def foo(x, y):
... | def add(self, dn, object_class=None, attributes=None):
self.result = { 'dn' : '',
'referrals' : None,
'description' : 'success',
'result' : 0,
'message' : '',
'type' : 'addResponse'}
... |
def foo(x, y):
... | def retire_user(cls, user_id):
"""
Retire user as part of GDPR Phase I
Returns 'True' if records found
:param user_id: int
:return: bool
"""
try:
user_obj = User.objects.get(id=user_id)
except User.DoesNotExist:
return False
... |
def foo(x, y):
... | def delete(self, dn, controls=None):
self.result = { 'dn' : '',
'referrals' : None,
'description' : 'success',
'result' : 0,
'message' : '',
'type' : 'addResponse'}
# Check to see if... |
def foo(x, y):
... | def approve(self, user_id=None, service=""):
"""
Approve the verification attempt for user
Valid attempt statuses when calling this method:
`submitted`, `approved`, `denied`
After method completes:
status is set to `approved`
expiry_date is set to on... |
def foo(x, y):
... | def modify(self, dn, changes, controls=None):
self.result = { 'dn' : '',
'referrals' : None,
'description' : 'success',
'result' : 0,
'message' : '',
'type' : 'modifyResponse'}
# Che... |
def foo(x, y):
... | def get_initial_verification(cls, user, earliest_allowed_date=None):
"""Get initial verification for a user with the 'photo_id_key'.
Arguments:
user(User): user object
earliest_allowed_date(datetime): override expiration date for initial verification
Return:
... |
def foo(x, y):
... | def _match_greater_than_or_equal(search_base, attribute, value, candidates):
matches = list()
for entry in candidates:
dn = entry.get("dn")
if not dn.endswith(search_base):
continue
value_from_directory = entry.get("attributes").get(attribute)
... |
def foo(x, y):
... | def upload_face_image(self, img_data):
"""
Upload an image of the user's face. `img_data` should be a raw
bytestream of a PNG image. This method will take the data, encrypt it
using our FACE_IMAGE_AES_KEY, encode it with base64 and save it to the
storage backend.
Yes, en... |
def foo(x, y):
... | def _match_greater_than(search_base, attribute, value, candidates):
matches = list()
for entry in candidates:
dn = entry.get("dn")
if not dn.endswith(search_base):
continue
value_from_directory = entry.get("attributes").get(attribute)
if s... |
def foo(x, y):
... | def upload_photo_id_image(self, img_data):
"""
Upload an the user's photo ID image. `img_data` should be a raw
bytestream of a PNG image. This method will take the data, encrypt it
using a randomly generated AES key, encode it with base64 and save it
to the storage backend. The r... |
def foo(x, y):
... | def _match_less_than_or_equal(search_base, attribute, value, candidates):
matches = list()
for entry in candidates:
dn = entry.get("dn")
if not dn.endswith(search_base):
continue
value_from_directory = entry.get("attributes").get(attribute)
... |
def foo(x, y):
... | def submit(self, copy_id_photo_from=None):
"""
Submit our verification attempt to Software Secure for validation. This
will set our status to "submitted" if the post is successful, and
"must_retry" if the post fails.
Keyword Arguments:
copy_id_photo_from (SoftwareSec... |
def foo(x, y):
... | def _match_less_than(search_base, attribute, value, candidates):
matches = list()
for entry in candidates:
dn = entry.get("dn")
if not dn.endswith(search_base):
continue
value_from_directory = entry.get("attributes").get(attribute)
if str(... |
def foo(x, y):
... | def parsed_error_msg(self):
"""
Parse the error messages we receive from SoftwareSecure
Error messages are written in the form:
`[{"photoIdReasons": ["Not provided"]}]`
Returns:
str[]: List of error messages.
"""
parsed_errors = []
error... |
def foo(x, y):
... | def _match_equal_to(search_base, attribute, value, candidates):
matches = list()
match_using_regex = False
if "*" in value:
match_using_regex = True
#regex = check_escape(value)
regex = value.replace('*', '.*')
regex = "^{0}$".format(regex)
... |
def foo(x, y):
... | def image_url(self, name, override_receipt_id=None):
"""
We dynamically generate this, since we want it the expiration clock to
start when the message is created, not when the record is created.
Arguments:
name (str): Name of the image (e.g. "photo_id" or "face")
Ke... |
def foo(x, y):
... | def _match_notequal_to(search_base, attribute, value, candidates):
matches = list()
match_using_regex = False
if "*" in value:
match_using_regex = True
#regex = check_escape(value)
regex = value.replace('*', '.*')
regex = "^{0}$".format(regex)
... |
def foo(x, y):
... | def _storage(self):
"""
Return the configured django storage backend.
"""
config = settings.VERIFY_STUDENT["SOFTWARE_SECURE"]
# Default to the S3 backend for backward compatibility
storage_class = config.get("STORAGE_CLASS", "storages.backends.s3boto.S3BotoStorage")
... |
def foo(x, y):
... | def _parse_filter():
op = pyparsing.oneOf('! & |')
lpar = pyparsing.Literal('(').suppress()
rpar = pyparsing.Literal(')').suppress()
k = pyparsing.Word(pyparsing.alphanums)
# NOTE: We may need to expand on this list, but as this is not a real
# LDAP server we should be... |
def foo(x, y):
... | def _get_path(self, prefix, override_receipt_id=None):
"""
Returns the path to a resource with this instance's `receipt_id`.
If `override_receipt_id` is given, the path to that resource will be
retrieved instead. This allows us to retrieve images submitted in
previous attempts (... |
def foo(x, y):
... | def _deDuplicate(results):
found = dict()
deDuped = list()
for entry in results:
dn = entry.get("dn")
if not dn in found:
found[dn] = 1
deDuped.append(entry)
return deDuped |
def foo(x, y):
... | def _encrypted_user_photo_key_str(self):
"""
Software Secure needs to have both UserPhoto and PhotoID decrypted in
the same manner. So even though this is going to be the same for every
request, we're also using RSA encryption to encrypt the AES key for
faces.
"""
... |
def foo(x, y):
... | def _invert_results(self, candidates):
inverted_candidates = list(self.directory)
for candidate in candidates:
try:
inverted_candidates.remove(candidate)
except ValueError:
pass
return inverted_candidates |
def foo(x, y):
... | def create_request(self, copy_id_photo_from=None):
"""
Construct the HTTP request to the photo verification service.
Keyword Arguments:
copy_id_photo_from (SoftwareSecurePhotoVerification): If provided, re-send the ID photo
data from this attempt. This is used for r... |
def foo(x, y):
... | def _search_not(self, base, search_filter, candidates=None):
# Create empty candidates list as we need to use self.directory for
# each search
candidates = list()
this_filter = list()
index = 0
search_filter.remove("!")
for condition in search_filter:
... |
def foo(x, y):
... | def request_message_txt(self):
"""
This is the body of the request we send across. This is never actually
used in the code, but exists for debugging purposes -- you can call
`print attempt.request_message_txt()` on the console and get a readable
rendering of the request that woul... |
def foo(x, y):
... | def _search_and(self, base, search_filter, candidates=None):
# Load the data from the directory, if we aren't passed any
if candidates == [] or candidates is None:
candidates = self.directory
this_filter = list()
index = 0
search_filter.remove("&")
for condit... |
def foo(x, y):
... | def send_request(self, copy_id_photo_from=None):
"""
Assembles a submission to Software Secure and sends it via HTTPS.
Keyword Arguments:
copy_id_photo_from (SoftwareSecurePhotoVerification): If provided, re-send the ID photo
data from this attempt. This is used for... |
def foo(x, y):
... | def _search_or(self, base, search_filter, candidates=None):
# Create empty candidates list as we need to use self.directory for
# each search
candidates = list()
this_filter = list()
index = 0
search_filter.remove("|")
for condition in search_filter:
... |
def foo(x, y):
... | def search(self, search_base=None, search_scope=None,
search_filter=None, attributes=None, paged_size=5,
size_limit=0, paged_cookie=None):
s_filter = list()
candidates = list()
self.response = list()
self.result = dict()
try:
if isinstan... |
def foo(x, y):
... | def set_deadline(cls, course_key, deadline, is_explicit=False):
"""
Configure the verification deadline for a course.
If `deadline` is `None`, then the course will have no verification
deadline. In this case, users will be able to verify for the course
at any time.
Arg... |
def foo(x, y):
... | def unbind(self):
return True |
def foo(x, y):
... | def deadlines_for_courses(cls, course_keys):
"""
Retrieve verification deadlines for particular courses.
Arguments:
course_keys (list): List of `CourseKey`s.
Returns:
dict: Map of course keys to datetimes (verification deadlines)
"""
all_deadlin... |
def foo(x, y):
... | def __init__(self):
self._calls = CallList()
self._server_mock = None
self.directory = []
self.exception = None
self.reset() |
def foo(x, y):
... | def deadline_for_course(cls, course_key):
"""
Retrieve the verification deadline for a particular course.
Arguments:
course_key (CourseKey): The identifier for the course.
Returns:
datetime or None
"""
try:
deadline = cls.objects.get... |
def foo(x, y):
... | def reset(self):
self._calls.reset() |
def foo(x, y):
... | def setLDAPDirectory(self, directory=None):
if directory is None:
self.directory = []
else:
try:
with open(DIRECTORY, 'w+') as f:
f.write(str(directory))
self.directory = directory
except OSError as e:
... |
def foo(x, y):
... | def set_exception(self, exc=True):
self.exception = exc |
def foo(x, y):
... | def _load_data(self, directory):
try:
with open(directory, 'r') as f:
data = f.read()
return literal_eval(data)
except OSError as e:
raise |
def foo(x, y):
... | def calls(self):
return self._calls |
def foo(x, y):
... | def __enter__(self):
self.start() |
def foo(x, y):
... | def __exit__(self, *args):
self.stop()
self.reset() |
def foo(x, y):
... | def activate(self, func):
evaldict = {'ldap3mock': self, 'func': func}
return get_wrapped(func, _wrapper_template, evaldict) |
def foo(x, y):
... | def _on_Server(self, host, port, use_ssl, connect_timeout, get_info=None,
tls=None):
# mangle request packet
return "FakeServerObject" |
def foo(x, y):
... | def _on_Connection(self, server, user, password,
auto_bind=None, client_strategy=None,
authentication=None, check_names=None,
auto_referrals=None, receive_timeout=None):
"""
We need to create a Connection object with
methods:
... |
def foo(x, y):
... | def unbound_on_Server(host, port,
use_ssl,
connect_timeout, *a, **kwargs):
return self._on_Server(host, port,
use_ssl,
connect_timeout, *a, **kwargs) |
def foo(x, y):
... | def unbound_on_Connection(server, user,
password,
auto_bind,
client_strategy,
authentication,
check_names,
auto_refe... |
def foo(x, y):
... | def stop(self):
self._patcher.stop()
self._patcher2.stop()
self._server_mock = None |
def foo(x, y):
... | def get_server_mock(self):
return self._server_mock |
def foo(x, y):
... | def setUp(self):
entry_Li = ComputedEntry("Li", -1.90753119)
with open(os.path.join(PymatgenTest.TEST_FILES_DIR, "LiTiO2_batt.json")) as f:
entries_LTO = json.load(f, cls=MontyDecoder)
self.ie_LTO = InsertionElectrode.from_entries(entries_LTO, entry_Li)
with open(os.pat... |
def foo(x, y):
... | def __init__(self):
"""
Every authenticator has to have a name
:param name:
"""
super().__init__() |
def foo(x, y):
... | def testName(self):
plotter = VoltageProfilePlotter(xaxis="frac_x")
plotter.add_electrode(self.ie_LTO, "LTO insertion")
plotter.add_electrode(self.ce_FF, "FeF3 conversion")
self.assertIsNotNone(plotter.get_plot_data(self.ie_LTO))
self.assertIsNotNone(plotter.get_plot_data(self.ce... |
def foo(x, y):
... | def testPlotly(self):
plotter = VoltageProfilePlotter(xaxis="frac_x")
plotter.add_electrode(self.ie_LTO, "LTO insertion")
plotter.add_electrode(self.ce_FF, "FeF3 conversion")
fig = plotter.get_plotly_figure()
self.assertEqual(fig.layout.xaxis.title.text, "Atomic Fraction of Li")
... |
def foo(x, y):
... | def _no_ssl_required_on_debug(app, **kwargs):
if app.debug or app.testing:
os.environ['AUTHLIB_INSECURE_TRANSPORT'] = '1' |
def foo(x, y):
... | def __init__(self, head):
self.head = head
self.lsize = 0
while head.next:
head = head.next
self.lsize += 1
self.m1_idx = None
self.m2_idx = None
if self.lsize > self._largesize:
self.m1_idx = self.lsize / 3 # start from 1/3
... |
def foo(x, y):
... | def _getN(self, n):
n -= 1
p = self.head
while n:
p = p.next
n -= 1
return p |
def foo(x, y):
... | def _get(delta, start):
p = start
while delta:
p = p.next
delta -= 1
return p.val |
def foo(x, y):
... | def main():
parser = argparse.ArgumentParser()
parser.add_argument("day", help="The day of the results, with format yyyymmdd")
args = parser.parse_args()
install_autopkgtest_results_formatter()
with tempfile.TemporaryDirectory(dir=os.environ.get("HOME")) as temp_dir:
clone_results_repo(temp_... |
def foo(x, y):
... | def __init__(self, parent, window):
self._parent = parent
self._window = window
self._application = self._parent._application
# create user interface
self._container = gtk.VBox(False, 5)
self._controls = gtk.HBox(False, 5)
separator = gtk.HSeparator()
# pack interface
self._container.pack_end(separ... |
def foo(x, y):
... | def install_autopkgtest_results_formatter():
subprocess.check_call(
["sudo", "snap", "install", "autopkgtest-results-formatter", "--edge"]
) |
def foo(x, y):
... | def can_handle(self, uri):
"""Returns boolean denoting if specified URI can be handled by this extension"""
return False |
def foo(x, y):
... | def clone_results_repo(dest_dir):
subprocess.check_call(
["git", "clone", "https://github.com/elopio/autopkgtest-results.git", dest_dir]
) |
def foo(x, y):
... | def get_container(self):
"""Return container widget"""
return self._container |
def foo(x, y):
... | def format_results(dest_dir, distros, day):
subprocess.check_call(
[
"/snap/bin/autopkgtest-results-formatter",
"--destination",
dest_dir,
"--distros",
*distros,
"--day",
day,
]
) |
def foo(x, y):
... | def get_information(self):
"""Returns information about extension"""
icon = None
name = None
return icon, name |
def foo(x, y):
... | def commit_and_push(repo_dir, day):
subprocess.check_call(
["git", "config", "--global", "user.email", "u1test+m-o@canonical.com"]
)
subprocess.check_call(["git", "config", "--global", "user.name", "snappy-m-o"])
subprocess.check_call(["git", "-C", repo_dir, "add", "--all"])
subprocess.chec... |
def foo(x, y):
... | def unmount(self, uri):
"""Method called by the mount manager for unmounting the selected URI"""
pass |
def foo(x, y):
... | def focus_object(self):
"""Method called by the mount manager for focusing main object"""
pass |
def foo(x, y):
... | def __init__(self, gan=None, config=None, trainer=None):
super().__init__(config=config, gan=gan, trainer=trainer)
self.d_grads = None
self.g_grads = None |
def foo(x, y):
... | def main():
# Contingency Table from Wilks (2011) Table 8.3
table = np.array([[50, 91, 71],
[47, 2364, 170],
[54, 205, 3288]])
mct = MulticlassContingencyTable(table, n_classes=table.shape[0],
class_names=np.arange(table.shape[... |
def foo(x, y):
... | def gradients(self, d_grads, g_grads):
if self.d_grads is None:
self.d_grads = [torch.zeros_like(_g) for _g in d_grads]
self.g_grads = [torch.zeros_like(_g) for _g in g_grads] |
def foo(x, y):
... | def __init__(self, table=None, n_classes=2, class_names=("1", "0")):
self.table = table
self.n_classes = n_classes
self.class_names = class_names
if table is None:
self.table = np.zeros((self.n_classes, self.n_classes), dtype=int) |
def foo(x, y):
... | def __add__(self, other):
assert self.n_classes == other.n_classes, "Number of classes does not match"
return MulticlassContingencyTable(self.table + other.table,
n_classes=self.n_classes,
class_names=self.class_names) |
def foo(x, y):
... | def peirce_skill_score(self):
"""
Multiclass Peirce Skill Score (also Hanssen and Kuipers score, True Skill Score)
"""
n = float(self.table.sum())
nf = self.table.sum(axis=1)
no = self.table.sum(axis=0)
correct = float(self.table.trace())
return (correct /... |
def foo(x, y):
... | def gerrity_score(self):
"""
Gerrity Score, which weights each cell in the contingency table by its observed relative frequency.
:return:
"""
k = self.table.shape[0]
n = float(self.table.sum())
p_o = self.table.sum(axis=0) / n
p_sum = np.cumsum(p_o)[:-1]
... |
def foo(x, y):
... | def heidke_skill_score(self):
n = float(self.table.sum())
nf = self.table.sum(axis=1)
no = self.table.sum(axis=0)
correct = float(self.table.trace())
return (correct / n - (nf * no).sum() / n ** 2) / (1 - (nf * no).sum() / n ** 2) |
def foo(x, y):
... | def git_checkout(git_url, git_branch=None, git_tag=None, git_hash=None):
git_dst = tempfile.mkdtemp()
g = GitManager(url=git_url, git_dst=git_dst, git_branch=git_branch, git_tag=git_tag, git_hash=git_hash)
g.run()
shutil.rmtree(git_dst) |
def foo(x, y):
... | def test_git_tag():
""" Test checkout w/ Tag """
git_checkout(git_url='https://github.com/voltgrid/voltgrid-pie.git', git_branch=None, git_tag='v0.1.0') |
def foo(x, y):
... | def test_git_branch():
""" Test checkout w/ Branch """
git_checkout(git_url='https://github.com/voltgrid/voltgrid-pie.git', git_branch='master', git_tag=None) |
def foo(x, y):
... | def test_make_gym_venv_nostack(name, num_envs, state_shape, reward_scale):
seed = 0
frame_op = None
frame_op_len = None
venv = make_gym_venv(name, num_envs, seed, frame_op=frame_op, frame_op_len=frame_op_len, reward_scale=reward_scale)
venv.reset()
for i in range(5):
state, reward, done,... |
def foo(x, y):
... | def compute_rbf_kernel_matrix(X):
"""Compute the RBF kernel matrix with sigma2 as the median pairwise
distance.
"""
sigma2 = np.median(pairwise_distances(X, metric='euclidean'))**2
K = pairwise_kernels(X, X, metric='rbf', gamma=1.0/sigma2, n_jobs=-1)
return K |
def foo(x, y):
... | def test_make_gym_concat(name, num_envs, state_shape, reward_scale):
seed = 0
frame_op = 'concat' # used for image, or for concat vector
frame_op_len = 4
venv = make_gym_venv(name, num_envs, seed, frame_op=frame_op, frame_op_len=frame_op_len, reward_scale=reward_scale)
venv.reset()
for i in ran... |
def foo(x, y):
... | def balanced_accuracy_scoring(clf, X, y):
"""Scoring function that computes the balanced accuracy to be used
internally in the cross-validation procedure.
"""
y_pred = clf.predict(X)
conf_mat = confusion_matrix(y, y_pred)
bal_acc = 0.
for i in range(len(conf_mat)):
bal_acc += (float(... |
def foo(x, y):
... | def test_make_gym_stack(name, num_envs, state_shape, reward_scale):
seed = 0
frame_op = 'stack' # used for rnn
frame_op_len = 4
venv = make_gym_venv(name, num_envs, seed, frame_op=frame_op, frame_op_len=frame_op_len, reward_scale=reward_scale)
venv.reset()
for i in range(5):
state, rewa... |
def foo(x, y):
... | def compute_svm_cv(K, y, C=100.0, n_folds=5,
scoring=balanced_accuracy_scoring):
"""Compute cross-validated score of SVM with given precomputed kernel.
"""
cv = StratifiedKFold(y, n_folds=n_folds)
clf = SVC(C=C, kernel='precomputed', class_weight='auto')
scores = cross_val_score(c... |
def foo(x, y):
... | def compute_svm_subjects(K, y, n_folds=5):
"""
"""
cv = KFold(len(K)/2, n_folds)
scores = np.zeros(n_folds)
for i, (train, test) in enumerate(cv):
train_ids = np.concatenate((train, len(K)/2+train))
test_ids = np.concatenate((test, len(K)/2+test))
clf = SVC(kernel='precompute... |
def foo(x, y):
... | def permutation_subjects(y):
"""Permute class labels of Contextual Disorder dataset.
"""
y_perm = np.random.randint(0, 2, len(y)/2)
y_perm = np.concatenate((y_perm, np.logical_not(y_perm).astype(int)))
return y_perm |
def foo(x, y):
... | def permutation_subjects_ktst(y):
"""Permute class labels of Contextual Disorder dataset for KTST.
"""
yp = np.random.randint(0, 2, len(y)/2)
yp = np.concatenate((yp, np.logical_not(yp).astype(int)))
y_perm = np.arange(len(y))
for i in range(len(y)/2):
if yp[i] == 1:
y_perm[i... |
def foo(x, y):
... | def compute_svm_score_nestedCV(K, y, n_folds,
scoring=balanced_accuracy_scoring,
random_state=None,
param_grid=[{'C': np.logspace(-5, 5, 25)}]):
"""Compute cross-validated score of SVM using precomputed kernel.
"""
... |
def foo(x, y):
... | def apply_svm(K, y, n_folds=5, iterations=10000, subjects=False, verbose=True,
random_state=None):
"""
Compute the balanced accuracy, its null distribution and the p-value.
Parameters:
----------
K: array-like
Kernel matrix
y: array_like
class labels
cv: Number... |
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