input stringlengths 11 7.65k | target stringlengths 22 8.26k |
|---|---|
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, signum, signame):
self.signum = signum
self.signame = signame
self.traceback_lines = traceback.format_stack()
super(SignalHandler.SignalHandledNonLocalExit, self).__init__() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def handle_sigquit(self, signum, _frame):
raise self.SignalHandledNonLocalExit(signum, "SIGQUIT") |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def handle_sigterm(self, signum, _frame):
raise self.SignalHandledNonLocalExit(signum, "SIGTERM") |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __new__(cls, *args, **kwargs):
raise TypeError("Instances of {} are not allowed to be constructed!".format(cls.__name__)) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def reset_should_print_backtrace_to_terminal(cls, should_print_backtrace):
"""Set whether a backtrace gets printed to the terminal error stream on a fatal error.
Class state:
- Overwrites `cls._should_print_backtrace_to_terminal`.
"""
cls._should_print_backtrace_to_terminal = sh... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def reset_log_location(cls, new_log_location: str) -> None:
"""Re-acquire file handles to error logs based in the new location.
Class state:
- Overwrites `cls._log_dir`, `cls._pid_specific_error_fileobj`, and
`cls._shared_error_fileobj`.
OS state:
- May create a new di... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _exiter(self) -> Optional[Exiter]:
return ExceptionSink.get_global_exiter() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get_global_exiter(cls) -> Optional[Exiter]:
return cls._exiter |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def exiter_as(cls, new_exiter_fun: Callable[[Optional[Exiter]], Exiter]) -> Iterator[None]:
"""Temporarily override the global exiter.
NB: We don't want to try/finally here, because we want exceptions to propagate
with the most recent exiter installed in sys.excepthook.
If we wrap this ... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def exiter_as_until_exception(
cls, new_exiter_fun: Callable[[Optional[Exiter]], Exiter]
) -> Iterator[None]:
"""Temporarily override the global exiter, except this will unset it when an exception
happens."""
previous_exiter = cls._exiter
new_exiter = new_exiter_fun(previous_... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _reset_exiter(cls, exiter: Optional[Exiter]) -> None:
"""Class state:
- Overwrites `cls._exiter`.
Python state:
- Overwrites sys.excepthook.
"""
logger.debug(f"overriding the global exiter with {exiter} (from {cls._exiter})")
# NB: mutate the class variables!... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def reset_interactive_output_stream(
cls, interactive_output_stream, override_faulthandler_destination=True
):
"""Class state:
- Overwrites `cls._interactive_output_stream`.
OS state:
- Overwrites the SIGUSR2 handler.
This method registers a SIGUSR2 handler, which p... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def exceptions_log_path(cls, for_pid=None, in_dir=None):
"""Get the path to either the shared or pid-specific fatal errors log file."""
if for_pid is None:
intermediate_filename_component = ""
else:
assert isinstance(for_pid, Pid)
intermediate_filename_compone... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def log_exception(cls, msg):
"""Try to log an error message to this process's error log and the shared error log.
NB: Doesn't raise (logs an error instead).
"""
pid = os.getpid()
fatal_error_log_entry = cls._format_exception_message(msg, pid)
# We care more about this l... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _try_write_with_flush(cls, fileobj, payload):
"""This method is here so that it can be patched to simulate write errors.
This is because mock can't patch primitive objects like file objects.
"""
fileobj.write(payload)
fileobj.flush() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def reset_signal_handler(cls, signal_handler):
"""Class state:
- Overwrites `cls._signal_handler`.
OS state:
- Overwrites signal handlers for SIGINT, SIGQUIT, and SIGTERM.
NB: This method calls signal.signal(), which will crash if not called from the main thread!
:retu... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def trapped_signals(cls, new_signal_handler):
"""A contextmanager which temporarily overrides signal handling.
NB: This method calls signal.signal(), which will crash if not called from the main thread!
"""
previous_signal_handler = cls.reset_signal_handler(new_signal_handler)
t... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def ignoring_sigint(cls):
"""A contextmanager which disables handling sigint in the current signal handler. This
allows threads that are not the main thread to ignore sigint.
NB: Only use this if you can't use ExceptionSink.trapped_signals().
Class state:
- Toggles `self._ignor... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def toggle_ignoring_sigint_v2_engine(cls, toggle: bool) -> None:
assert cls._signal_handler is not None
cls._signal_handler._toggle_ignoring_sigint_v2_engine(toggle) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _iso_timestamp_for_now(cls):
return datetime.datetime.now().isoformat() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _format_exception_message(cls, msg, pid):
return cls._EXCEPTION_LOG_FORMAT.format(
timestamp=cls._iso_timestamp_for_now(),
process_title=setproctitle.getproctitle(),
args=sys.argv,
pid=pid,
message=msg,
) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _format_traceback(cls, traceback_lines, should_print_backtrace):
if should_print_backtrace:
traceback_string = "\n{}".format("".join(traceback_lines))
else:
traceback_string = " {}".format(cls._traceback_omitted_default_text)
return traceback_string |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _format_unhandled_exception_log(cls, exc, tb, add_newline, should_print_backtrace):
exc_type = type(exc)
exception_full_name = "{}.{}".format(exc_type.__module__, exc_type.__name__)
exception_message = str(exc) if exc else "(no message)"
maybe_newline = "\n" if add_newline else ""
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _exit_with_failure(cls, terminal_msg):
timestamp_msg = (
f"timestamp: {cls._iso_timestamp_for_now()}\n"
if cls._should_print_backtrace_to_terminal
else ""
)
details_msg = (
""
if cls._should_print_backtrace_to_terminal
e... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _log_unhandled_exception_and_exit(
cls, exc_class=None, exc=None, tb=None, add_newline=False
):
"""A sys.excepthook implementation which logs the error and exits with failure."""
exc_class = exc_class or sys.exc_info()[0]
exc = exc or sys.exc_info()[1]
tb = tb or sys.exc_... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _handle_signal_gracefully(cls, signum, signame, traceback_lines):
"""Signal handler for non-fatal signals which raises or logs an error and exits with
failure."""
# Extract the stack, and format an entry to be written to the exception log.
formatted_traceback = cls._format_traceback(... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, raw_data):
self._raw = raw_data |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __getitem__(self, key):
return self._raw[key] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def display_name(self):
"""
Find the most appropriate display name for a user: look for a "display_name", then
a "real_name", and finally fall back to the always-present "name".
"""
for k in self._NAME_KEYS:
if self._raw.get(k):
return self._raw[k]
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def email(self):
"""
Shortcut property for finding the e-mail address or bot URL.
"""
if "profile" in self._raw:
email = self._raw["profile"].get("email")
elif "bot_url" in self._raw:
email = self._raw["bot_url"]
else:
email = None
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def image_url(self, pixel_size=None):
"""
Get the URL for the user icon in the desired pixel size, if it exists. If no
size is supplied, give the URL for the full-size image.
"""
if "profile" not in self._raw:
return
profile = self._raw["profile"]
if (... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def md5(fname):
hash_md5 = hashlib.md5()
with open(fname, "rb") as f:
for chunk in iter(lambda: f.read(4096), b""):
hash_md5.update(chunk)
return hash_md5.hexdigest() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _read_soundings(sounding_file_name, sounding_field_names, radar_image_dict):
"""Reads storm-centered soundings and matches w storm-centered radar imgs.
:param sounding_file_name: Path to input file (will be read by
`soundings.read_soundings`).
:param sounding_field_names: See doc for `soundings... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def chunkstring(s, n):
return [ s[i:i+n] for i in xrange(0, len(s), n) ] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _create_2d_examples(
radar_file_names, full_id_strings, storm_times_unix_sec,
target_matrix, sounding_file_name=None, sounding_field_names=None):
"""Creates 2-D examples for one file time.
E = number of desired examples (storm objects)
e = number of examples returned
T = number of t... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, key):
self.bs = 32
self.key = hashlib.sha256(key.encode()).digest() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _create_3d_examples(
radar_file_name_matrix, full_id_strings, storm_times_unix_sec,
target_matrix, sounding_file_name=None, sounding_field_names=None):
"""Creates 3-D examples for one file time.
:param radar_file_name_matrix: numpy array (F_r x H_r) of paths to storm-
centered radar... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def encrypt(self, raw):
raw = self._pad(raw)
iv = Random.new().read(AES.block_size)
cipher = AES.new(self.key, AES.MODE_CBC, iv)
return iv + cipher.encrypt(raw) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _create_2d3d_examples_myrorss(
azimuthal_shear_file_names, reflectivity_file_names,
full_id_strings, storm_times_unix_sec, target_matrix,
sounding_file_name=None, sounding_field_names=None):
"""Creates hybrid 2D-3D examples for one file time.
Fields in 2-D images: low-level and mid-... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def decrypt(self, enc):
# enc = base64.b64decode(enc)
iv = enc[:AES.block_size]
cipher = AES.new(self.key, AES.MODE_CBC, iv)
return self._unpad(cipher.decrypt(enc[AES.block_size:])).decode('utf-8') |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _read_metadata_from_example_file(netcdf_file_name, include_soundings):
"""Reads metadata from file with input examples.
:param netcdf_file_name: Path to input file.
:param include_soundings: Boolean flag. If True and file contains
soundings, this method will return keys "sounding_field_names" ... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _pad(self, s):
return s + (self.bs - len(s) % self.bs) * chr(self.bs - len(s) % self.bs) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _compare_metadata(netcdf_dataset, example_dict):
"""Compares metadata between existing NetCDF file and new batch of examples.
This method contains a large number of `assert` statements. If any of the
`assert` statements fails, this method will error out.
:param netcdf_dataset: Instance of `netCDF... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _unpad(s):
return s[:-ord(s[len(s)-1:])] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _filter_examples_by_class(target_values, downsampling_dict,
test_mode=False):
"""Filters examples by target value.
E = number of examples
:param target_values: length-E numpy array of target values (integer class
labels).
:param downsampling_dict: Dictionary, ... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, host, key, port=443, max_size=4096):
# Params for all class
self.host = host
self.port = port
self.max_size = max_size - 60
self.AESDriver = AESCipher(key=key)
self.serv_addr = (host, port)
# Class Globals
self.max_packets = 255 # Limi... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _file_name_to_batch_number(example_file_name):
"""Parses batch number from file.
:param example_file_name: See doc for `find_example_file`.
:return: batch_number: Integer.
:raises: ValueError: if batch number cannot be parsed from file name.
"""
pathless_file_name = os.path.split(example_f... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _genSeq(self):
self.raw_sequence = random.getrandbits(64)
parts = []
while self.raw_sequence:
parts.append(self.raw_sequence & limit)
self.raw_sequence >>= 32
self.sequence = struct.pack('<' + 'L'*len(parts), *parts)
# struct.unpack('<LL', '\xb1l\x1c\... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _check_target_vars(target_names):
"""Error-checks list of target variables.
Target variables must all have the same mean lead time (average of min and
max lead times) and event type (tornado or wind).
:param target_names: 1-D list with names of target variables. Each must be
accepted by `... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _createSocket(self):
try:
sock = socket.socket(socket.AF_INET, socket.SOCK_DGRAM)
self.sock = sock
return 0
except socket.error as e:
sys.stderr.write("[!]\tFailed to create a UDP socket.\n%s.\n" % e)
return 1 |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _check_layer_operation(example_dict, operation_dict):
"""Error-checks layer operation.
Such operations are used for dimensionality reduction (to convert radar data
from 3-D to 2-D).
:param example_dict: See doc for `reduce_examples_3d_to_2d`.
:param operation_dict: Dictionary with the followin... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _getQUICHeader(self, count):
if type(count) is not hex:
try:
count_id = chr(count)
except:
sys.stderr.write("Count must be int or hex.\n")
return 1
else:
count_id = count
if count > self.max_packets:
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _apply_layer_operation(example_dict, operation_dict):
"""Applies layer operation to radar data.
:param example_dict: See doc for `reduce_examples_3d_to_2d`.
:param operation_dict: See doc for `_check_layer_operation`.
:return: new_radar_matrix: E-by-M-by-N numpy array resulting from layer
o... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _getFileContent(self, file_path):
try:
f = open(file_path, 'rb')
data = f.read()
f.close()
sys.stdout.write("[+]\tFile '%s' was loaded for exfiltration.\n" % file_path)
return data
except IOError, e:
sys.stderr.write("[-]\tUnabl... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _subset_radar_data(
example_dict, netcdf_dataset_object, example_indices_to_keep,
field_names_to_keep, heights_to_keep_m_agl, num_rows_to_keep,
num_columns_to_keep):
"""Subsets radar data by field, height, and horizontal extent.
If the file contains both 2-D shear images and 3-D ref... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def sendFile(self, file_path):
# Get File content
data = self._getFileContent(file_path)
if data == 1:
return 1
# Check that the file is not too big.
if len(data) > (self.max_packets * self.max_size):
sys.stderr.write("[!]\tFile is too big for export.\n"... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _subset_sounding_data(
example_dict, netcdf_dataset_object, example_indices_to_keep,
field_names_to_keep, heights_to_keep_m_agl):
"""Subsets sounding data by field and height.
:param example_dict: See doc for `_subset_radar_data`.
:param netcdf_dataset_object: Same.
:param example_i... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def close(self):
time.sleep(0.1)
self.sock.close()
return 0 |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_storm_images_2d(
top_directory_name, radar_source, radar_field_names,
first_spc_date_string, last_spc_date_string, radar_heights_m_agl=None,
reflectivity_heights_m_agl=None):
"""Locates files with 2-D storm-centered radar images.
D = number of SPC dates in time period (`first_s... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_storm_images_3d(
top_directory_name, radar_source, radar_field_names,
radar_heights_m_agl, first_spc_date_string, last_spc_date_string):
"""Locates files with 3-D storm-centered radar images.
D = number of SPC dates in time period (`first_spc_date_string`...
`last_spc_date_stri... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_storm_images_2d3d_myrorss(
top_directory_name, first_spc_date_string, last_spc_date_string,
reflectivity_heights_m_agl):
"""Locates files with 2-D and 3-D storm-centered radar images.
Fields in 2-D images: low-level and mid-level azimuthal shear
Field in 3-D images: reflectivity
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_sounding_files(
top_sounding_dir_name, radar_file_name_matrix, target_names,
lag_time_for_convective_contamination_sec):
"""Locates files with storm-centered soundings.
D = number of SPC dates in time period
:param top_sounding_dir_name: Name of top-level directory. Files therein... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_target_files(top_target_dir_name, radar_file_name_matrix,
target_names):
"""Locates files with target values (storm-hazard indicators).
D = number of SPC dates in time period
:param top_target_dir_name: Name of top-level directory. Files therein
will be found by `ta... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def subset_examples(example_dict, indices_to_keep, create_new_dict=False):
"""Subsets examples in dictionary.
:param example_dict: See doc for `write_example_file`.
:param indices_to_keep: 1-D numpy array with indices of examples to keep.
:param create_new_dict: Boolean flag. If True, this method will... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_example_file(
top_directory_name, shuffled=True, spc_date_string=None,
batch_number=None, raise_error_if_missing=True):
"""Looks for file with input examples.
If `shuffled = True`, this method looks for a file with shuffled examples
(from many different times). If `shuffled = Fals... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def find_many_example_files(
top_directory_name, shuffled=True, first_spc_date_string=None,
last_spc_date_string=None, first_batch_number=None,
last_batch_number=None, raise_error_if_any_missing=True):
"""Looks for many files with input examples.
:param top_directory_name: See doc for `... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def read_example_file(
netcdf_file_name, read_all_target_vars, target_name=None,
metadata_only=False, targets_only=False, include_soundings=True,
radar_field_names_to_keep=None, radar_heights_to_keep_m_agl=None,
sounding_field_names_to_keep=None, sounding_heights_to_keep_m_agl=None,
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def read_specific_examples(
netcdf_file_name, read_all_target_vars, full_storm_id_strings,
storm_times_unix_sec, target_name=None, include_soundings=True,
radar_field_names_to_keep=None, radar_heights_to_keep_m_agl=None,
sounding_field_names_to_keep=None, sounding_heights_to_keep_m_agl=N... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def reduce_examples_3d_to_2d(example_dict, list_of_operation_dicts):
"""Reduces examples from 3-D to 2-D.
If the examples contain both 2-D azimuthal-shear images and 3-D
reflectivity images:
- Keys "reflectivity_image_matrix_dbz" and "az_shear_image_matrix_s01" are
required.
- "radar_heights... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get_schema(self):
"""Returns the set YAML schema for the metric class.
Returns:
YAML schema of the metrics type.
"""
return self._schema |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get(self):
return os.environ[self._name] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get_metrics(self):
"""Returns the stored metrics.
The metrics are type checked against the set schema.
Returns:
Dictionary of metrics data in the format of the set schema.
"""
artifact_utils.verify_schema_instance(self._schema, self._values)
return self._v... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, resolver, proxy_type, key):
if proxy_type == "file":
self._method = resolver.get_file_content
elif proxy_type == "param":
self._method = resolver.get_parameter_value
elif proxy_type == "secret":
self._method = resolver.get_secret_value
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, schema_file: str):
self._schema = artifact_utils.read_schema_file(schema_file)
self._type_name, self._metric_fields = artifact_utils.parse_schema(
self._schema)
self._values = {} |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get(self):
return self._method(self._key) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __getattr__(self, name: str) -> Any:
"""Custom __getattr__ to allow access to metrics schema fields."""
if name not in self._metric_fields:
raise AttributeError('No field: {} in metrics.'.format(name))
return self._values[name] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, child_proxy):
self._child_proxy = child_proxy |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __setattr__(self, name: str, value: Any):
"""Custom __setattr__ to allow access to metrics schema fields."""
if not self._initialized:
object.__setattr__(self, name, value)
return
if name not in self._metric_fields:
raise RuntimeError(
'F... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get(self):
return json.loads(self._child_proxy.get()) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self):
super().__init__('confidence_metrics.yaml')
self._initialized = True |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self):
super().__init__('confusion_matrix.yaml')
self._matrix = [[]]
self._categories = []
self._initialized = True |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get(self):
return base64.b64decode(self._child_proxy.get()) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def set_categories(self, categories: List[str]):
"""Sets the categories for Confusion Matrix.
Args:
categories: List of strings specifying the categories.
"""
self._categories = []
annotation_specs = []
for category in categories:
annotation_spec = ... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, key, child_proxy):
try:
self._key = int(key)
except ValueError:
self._key = key
self._child_proxy = child_proxy |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def log_row(self, row_category: str, row: List[int]):
"""Logs a confusion matrix row.
Args:
row_category: Category to which the row belongs.
row: List of integers specifying the values for the row.
Raises:
ValueError: If row_category is not in the list of categori... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def get(self):
return self._child_proxy.get()[self._key] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def log_cell(self, row_category: str, col_category: str, value: int):
"""Logs a cell in the confusion matrix.
Args:
row_category: String representing the name of the row category.
col_category: String representing the name of the column category.
value: Int value of the ce... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self):
self._cache = {}
self._bucket_client = None
self._param_client = None
self._secret_client = None |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _get_or_create_cached_value(self, key, getter, ttl=None):
# happy path
try:
expiry, value = self._cache[key]
except KeyError:
pass
else:
if expiry is None or time.time() < expiry:
logger.debug("Key %s from cache", key)
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def getter():
with open(filepath, "r") as f:
return f.read() |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def getter():
return self._secret_client.get(name) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def getter():
return self._bucket_client.download_to_tmpfile(key) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def getter():
return self._param_client.get(key) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __init__(self, path=None, resolver=None):
self._path = path or ()
if not resolver:
resolver = Resolver()
self._resolver = resolver |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _make_proxy(self, key, match):
proxy_type = match.group("type")
key = match.group("key").strip()
if proxy_type == "env":
proxy = EnvProxy(key)
else:
proxy = ResolverMethodProxy(self._resolver, proxy_type, key)
filters = [f for f in [rf.strip() for rf i... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _from_python(self, key, value):
new_path = self._path + (key,)
if isinstance(value, dict):
value = self.custom_classes.get(new_path, ConfigDict)(value, new_path)
elif isinstance(value, list):
value = self.custom_classes.get(new_path, ConfigList)(value, new_path)
... |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def _to_python(self, value):
if isinstance(value, Proxy):
return value.get()
else:
return value |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __len__(self):
return len(self._collection) |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __delitem__(self, key):
del self._collection[key] |
def delete(self, doc):
if doc.id is None:
raise DatabaseException('Document does not have id')
if doc.sid is None:
try:
rs = self.db.docs.remove({'id': doc.id}, safe=True)
assert rs['n'] == 1
except Exception as e:
raise... | def __setitem__(self, key, value):
self._collection[key] = self._from_python(key, value) |
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