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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 8 new columns ({'train_train_accuracy', 'train_n_designs', 'train_train_auroc', 'fold', 'eval_n_designs', 'eval_accuracy', 'cell_name', 'eval_auroc'}) and 13 missing columns ({'train_n_designs_mean', 'train_n_designs_std', 'eval_n_designs_mean', 'eval_n_designs_std', 'train_train_auroc_mean', 'eval_accuracy_std', 'eval_accuracy_mean', 'train_train_auroc_std', 'n_folds', 'train_train_accuracy_std', 'eval_auroc_std', 'train_train_accuracy_mean', 'eval_auroc_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/michaelwaves/saeber-virulence-probes-random/probes_per_fold.csv (at revision 76b12fdf33e7cd71e4971b8583e22838a306d92e), [/tmp/hf-datasets-cache/medium/datasets/65645828274359-config-parquet-and-info-michaelwaves-saeber-virul-d470facc/hub/datasets--michaelwaves--saeber-virulence-probes-random/snapshots/76b12fdf33e7cd71e4971b8583e22838a306d92e/probes.csv (origin=hf://datasets/michaelwaves/saeber-virulence-probes-random@76b12fdf33e7cd71e4971b8583e22838a306d92e/probes.csv), /tmp/hf-datasets-cache/medium/datasets/65645828274359-config-parquet-and-info-michaelwaves-saeber-virul-d470facc/hub/datasets--michaelwaves--saeber-virulence-probes-random/snapshots/76b12fdf33e7cd71e4971b8583e22838a306d92e/probes_per_fold.csv (origin=hf://datasets/michaelwaves/saeber-virulence-probes-random@76b12fdf33e7cd71e4971b8583e22838a306d92e/probes_per_fold.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2281, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2227, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
dataset: string
model: string
hook: string
extractor: string
fold: int64
cell_name: string
train_train_accuracy: double
train_train_auroc: double
train_n_designs: int64
eval_accuracy: double
eval_auroc: double
eval_n_designs: int64
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1709
to
{'dataset': Value('string'), 'model': Value('string'), 'hook': Value('string'), 'extractor': Value('string'), 'n_folds': Value('int64'), 'eval_accuracy_mean': Value('float64'), 'eval_accuracy_std': Value('float64'), 'eval_auroc_mean': Value('float64'), 'eval_auroc_std': Value('float64'), 'eval_n_designs_mean': Value('float64'), 'eval_n_designs_std': Value('float64'), 'train_n_designs_mean': Value('float64'), 'train_n_designs_std': Value('float64'), 'train_train_accuracy_mean': Value('float64'), 'train_train_accuracy_std': Value('float64'), 'train_train_auroc_mean': Value('float64'), 'train_train_auroc_std': Value('float64')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 8 new columns ({'train_train_accuracy', 'train_n_designs', 'train_train_auroc', 'fold', 'eval_n_designs', 'eval_accuracy', 'cell_name', 'eval_auroc'}) and 13 missing columns ({'train_n_designs_mean', 'train_n_designs_std', 'eval_n_designs_mean', 'eval_n_designs_std', 'train_train_auroc_mean', 'eval_accuracy_std', 'eval_accuracy_mean', 'train_train_auroc_std', 'n_folds', 'train_train_accuracy_std', 'eval_auroc_std', 'train_train_accuracy_mean', 'eval_auroc_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/michaelwaves/saeber-virulence-probes-random/probes_per_fold.csv (at revision 76b12fdf33e7cd71e4971b8583e22838a306d92e), [/tmp/hf-datasets-cache/medium/datasets/65645828274359-config-parquet-and-info-michaelwaves-saeber-virul-d470facc/hub/datasets--michaelwaves--saeber-virulence-probes-random/snapshots/76b12fdf33e7cd71e4971b8583e22838a306d92e/probes.csv (origin=hf://datasets/michaelwaves/saeber-virulence-probes-random@76b12fdf33e7cd71e4971b8583e22838a306d92e/probes.csv), /tmp/hf-datasets-cache/medium/datasets/65645828274359-config-parquet-and-info-michaelwaves-saeber-virul-d470facc/hub/datasets--michaelwaves--saeber-virulence-probes-random/snapshots/76b12fdf33e7cd71e4971b8583e22838a306d92e/probes_per_fold.csv (origin=hf://datasets/michaelwaves/saeber-virulence-probes-random@76b12fdf33e7cd71e4971b8583e22838a306d92e/probes_per_fold.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
dataset string | model string | hook string | extractor string | n_folds int64 | eval_accuracy_mean float64 | eval_accuracy_std float64 | eval_auroc_mean float64 | eval_auroc_std float64 | eval_n_designs_mean float64 | eval_n_designs_std float64 | train_n_designs_mean float64 | train_n_designs_std float64 | train_train_accuracy_mean float64 | train_train_accuracy_std float64 | train_train_auroc_mean float64 | train_train_auroc_std float64 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rf3_safeprotein | rf3 | block12 | identity | 5 | 0.717679 | 0.101923 | 0.777337 | 0.116995 | 54 | 1.732051 | 216 | 1.732051 | 0.787035 | 0.019905 | 0.866554 | 0.018752 |
rf3_safeprotein | rf3 | block12 | sae_encode | 5 | 0.725605 | 0.052582 | 0.771093 | 0.083668 | 54 | 1.732051 | 216 | 1.732051 | 0.791656 | 0.01582 | 0.861573 | 0.011474 |
rf3_safeprotein | rf3 | block16 | identity | 5 | 0.733516 | 0.047762 | 0.776378 | 0.064493 | 54 | 1.732051 | 216 | 1.732051 | 0.786109 | 0.020266 | 0.842311 | 0.022715 |
rf3_safeprotein | rf3 | block16 | sae_encode | 5 | 0.718332 | 0.068205 | 0.774387 | 0.098729 | 54 | 1.732051 | 216 | 1.732051 | 0.793521 | 0.009433 | 0.856932 | 0.005983 |
rf3_toxinpred3 | rf3 | block12 | identity | 5 | null | null | 0.5 | 0 | 0 | 0 | 960 | 0 | 0.7475 | 0.009705 | 0.825204 | 0.008615 |
rf3_toxinpred3 | rf3 | block12 | sae_encode | 5 | null | null | 0.5 | 0 | 0 | 0 | 960 | 0 | 0.802292 | 0.007562 | 0.877881 | 0.003524 |
rf3_toxinpred3 | rf3 | block16 | identity | 5 | null | null | 0.5 | 0 | 0 | 0 | 960 | 0 | 0.754583 | 0.006613 | 0.827827 | 0.006906 |
rf3_toxinpred3 | rf3 | block16 | sae_encode | 5 | null | null | 0.5 | 0 | 0 | 0 | 960 | 0 | 0.793125 | 0.004395 | 0.864821 | 0.003891 |
rfd3_safeprotein | rfd3 | block12 | identity | 5 | 0.818182 | 0.036364 | 0.863361 | 0.07023 | 55 | 0 | 220 | 0 | 0.890909 | 0.019551 | 0.949742 | 0.010378 |
rfd3_safeprotein | rfd3 | block12 | sae_encode | 5 | 0.810909 | 0.039834 | 0.87741 | 0.027771 | 55 | 0 | 220 | 0 | 0.879091 | 0.010947 | 0.943113 | 0.003197 |
rfd3_safeprotein | rfd3 | block6 | identity | 5 | 0.669091 | 0.041461 | 0.722039 | 0.073826 | 55 | 0 | 220 | 0 | 0.737273 | 0.017129 | 0.82543 | 0.02095 |
rfd3_safeprotein | rfd3 | block6 | sae_encode | 5 | 0.672727 | 0.046355 | 0.716804 | 0.098971 | 55 | 0 | 220 | 0 | 0.748182 | 0.034106 | 0.823261 | 0.020551 |
rfd3_safeprotein | rfd3 | block8 | identity | 5 | 0.72 | 0.045636 | 0.785399 | 0.057945 | 55 | 0 | 220 | 0 | 0.796364 | 0.023923 | 0.877014 | 0.017757 |
rfd3_safeprotein | rfd3 | block8 | sae_encode | 5 | 0.665455 | 0.063766 | 0.758678 | 0.08514 | 55 | 0 | 220 | 0 | 0.762727 | 0.022128 | 0.840496 | 0.019436 |
rf3_safeprotein | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_safeprotein | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rf3_toxinpred3 | rf3 | block16 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block12 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block6 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | identity | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
rfd3_safeprotein | rfd3 | block8 | sae_encode | null | null | null | null | null | null | null | null | null | null | null | null | null |
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