The dataset viewer is not available for this subset.
Exception: SplitsNotFoundError
Message: The split names could not be parsed from the dataset config.
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/inspect.py", line 289, in get_dataset_config_info
for split_generator in builder._split_generators(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 81, in _split_generators
first_examples = list(islice(pipeline, self.NUM_EXAMPLES_FOR_FEATURES_INFERENCE))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 47, in _get_pipeline_from_tar
extracted_file_path = streaming_download_manager.extract(f"memory://{filename}")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/download/streaming_download_manager.py", line 121, in extract
urlpaths = map_nested(self._extract, url_or_urls, map_tuple=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/utils/py_utils.py", line 493, in map_nested
mapped = function(data_struct)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/download/streaming_download_manager.py", line 131, in _extract
raise NotImplementedError(
NotImplementedError: Extraction protocol for TAR archives like 'memory://InsectBase_genome/Microceris_merops.genome.fa.tar.bz2' is not implemented in streaming mode. Please use `dl_manager.iter_archive` instead.
Example usage:
url = dl_manager.download(url)
tar_archive_iterator = dl_manager.iter_archive(url)
for filename, file in tar_archive_iterator:
...
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/split_names.py", line 65, in compute_split_names_from_streaming_response
for split in get_dataset_split_names(
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/inspect.py", line 343, in get_dataset_split_names
info = get_dataset_config_info(
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/inspect.py", line 294, in get_dataset_config_info
raise SplitsNotFoundError("The split names could not be parsed from the dataset config.") from err
datasets.inspect.SplitsNotFoundError: The split names could not be parsed from the dataset config.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
InsectBase 3.0: A Comprehensive Multi-omics Resource for Insects
InsectBase is a specialized bioinformatics database providing extensive genomic and multi-omic resources for the insect research community. This repository hosts the high-throughput genomic sequences and predicted protein structures associated with the InsectBase 3.0 update.
1. InsectBase_Genome
This subset contains the comprehensive insect genome assembly files in FASTA format.
File Reconstruction
Due to the massive size of the genomic data (~400GB), the archive has been split into multiple chunks (7-10 parts) to ensure stable downloading. To reconstruct the original file, please use the following commands in your terminal:
# Navigate to the download folder
cd InsectBase_Genome
# Merge the split parts back into a single tar.gz file
cat InsectBase_genome.tar.gz.part* > InsectBase_genome.tar.gz
# Extract the FASTA files
tar -zxvf InsectBase_genome.tar.gz
# (Optional) Verify integrity if sha256.txt is provided
sha256sum -c sha256.txt
2. InsectBase_Protein_Structure
This subset provides structural data for 29 specific gene families. These structures were generated using AlphaFold 3, providing state-of-the-art accuracy for protein-insect physiological research and evolutionary analysis.
- Format:
.pdbor.mmCIF(compressed within family-specific archives). - Scope: Covers major gene families critical to insect development, immunity, and metabolic processes.
Citation
If you use this dataset or the resources from InsectBase in your research, please cite the following paper published in Nucleic Acids Research:
Zuoqi Wang, Hao Chen, Shuo Jin, Zonghuan Li, Yang Mei, Yiqi Xiao, Chenfan Zhao, Tianyu Zhou, Fei Li, Ying Liu, Kang He, InsectBase 3.0: a comprehensive multi-omics resource for insects, Nucleic Acids Research, 2025;, gkaf1248, https://doi.org/10.1093/nar/gkaf1248
Contact & Support
For more detailed information, interactive tools, and additional omics data (Transcriptomics, Metabolomics, etc.), please visit our official website: https://www.insect-genome.com/
For technical issues regarding the data hosted on Hugging Face, please open an issue in this repository.
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