| # API ⚙️ | |
| A full listing of all API endpoints can be found here: | |
| https://www.genomenexus.org/swagger-ui.html. | |
| ## API Clients | |
| For access through Python/R see the notebooks here: | |
| https://github.com/genome-nexus/genome-nexus/tree/master/notebooks | |
| ## Command Line Clients | |
| There are two Command Line Clients available. One written in NodeJS which provides a simple user-friendly interface: | |
| https://github.com/genome-nexus/genome-nexus-cli | |
| There is also a Java Command Line Client which has been developed with a focus on internal processes at Memorial Sloan Kettering Cancer Center but might work for your use case as well: | |
| https://github.com/genome-nexus/genome-nexus-annotation-pipeline | |
| They are similar in terms of feature completeness | |
| ## Other Languages | |
| The API follows the Swagger/Open API specification, so clients can be generated in most languages: https://openapi-generator.tech/docs/generators | |
| ## Applications build on top of the API | |
| See the [tools section](Tools.md) | |