Add metadata and links to paper and code

README.md

@@ -1,6 +1,18 @@
+---
+task_categories:
+- text-generation
+tags:
+- biology
+- dna
+- trace-reconstruction
+---
+
 # TReconLM synthetic test sets
 
-This dataset contains the synthetic test sets used to evaluate TReconLM, a transformer-based model for trace reconstruction of noisy DNA sequences (see [our paper](https://arxiv.org/pdf/2507.12927)).
+This dataset contains the synthetic test sets used to evaluate TReconLM, a transformer-based model for trace reconstruction of noisy DNA sequences.
+
+- **Paper:** [Trace Reconstruction with Language Models](https://arxiv.org/pdf/2507.12927)
+- **Code:** [MLI-lab/TReconLM](https://github.com/MLI-lab/TReconLM)
 
 The real-world datasets used for fine-tuning are available here:
 
@@ -25,4 +37,10 @@ The corresponding test sets used in the paper can be reproduced using the prepro
 
 ## Usage
 
-Instructions for running inference using these datasets and our pretrained models are provided in the [`trace_reconstruction.ipynb`](https://github.com/MLI-lab/TReconLM/blob/main/trace_reconstruction.ipynb) notebook in our GitHub repository.
+Instructions for running inference using these datasets and our pretrained models are provided in the [`trace_reconstruction.ipynb`](https://github.com/MLI-lab/TReconLM/blob/main/trace_reconstruction.ipynb) notebook in our GitHub repository.
+
+To run inference via the command line:
+
+```bash
+python src/inference.py exps=<experiment>
+```