| { |
| "method_runtimes_sec": { |
| "correlation": { |
| "layer_a_chipatlas_sec": 19.242124, |
| "layer_b_curated_sec": 0.871538, |
| "layer_c_canonical_sec": 0.197274, |
| "layer_d_k562_sec": 0.694737, |
| "total_sec": 21.005673 |
| }, |
| "deepsem": { |
| "layer_a_chipatlas_sec": 1.377161, |
| "layer_b_curated_sec": 0.08245, |
| "layer_c_canonical_sec": 0.015056, |
| "layer_d_k562_sec": 0.074125, |
| "total_sec": 1.548792 |
| }, |
| "geneformer_attn": { |
| "layer_a_chipatlas_sec": 8.31889, |
| "layer_b_curated_sec": 0.423055, |
| "layer_c_canonical_sec": 0.085655, |
| "layer_d_k562_sec": 0.445306, |
| "total_sec": 9.272906 |
| }, |
| "genie3": { |
| "layer_a_chipatlas_sec": 17.806579, |
| "layer_b_curated_sec": 0.798014, |
| "layer_c_canonical_sec": 0.180552, |
| "layer_d_k562_sec": 0.650593, |
| "total_sec": 19.435738 |
| }, |
| "grnboost2": { |
| "layer_a_chipatlas_sec": 14.034096, |
| "layer_b_curated_sec": 0.646535, |
| "layer_c_canonical_sec": 0.142509, |
| "layer_d_k562_sec": 0.622533, |
| "total_sec": 15.445673 |
| }, |
| "inferelator": { |
| "layer_a_chipatlas_sec": 5.433204, |
| "layer_b_curated_sec": 0.296585, |
| "layer_c_canonical_sec": 0.058108, |
| "layer_d_k562_sec": 0.50169, |
| "total_sec": 6.289587 |
| }, |
| "random_null": { |
| "layer_a_chipatlas_sec": 13.758648, |
| "layer_b_curated_sec": 0.728264, |
| "layer_c_canonical_sec": 0.154618, |
| "layer_d_k562_sec": 0.66293, |
| "total_sec": 15.30446 |
| }, |
| "scenic": { |
| "layer_a_chipatlas_sec": 0.528207, |
| "layer_b_curated_sec": 0.041938, |
| "layer_c_canonical_sec": 0.006377, |
| "layer_d_k562_sec": 0.073127, |
| "total_sec": 0.649649 |
| }, |
| "scnet": { |
| "layer_a_chipatlas_sec": 12.46582, |
| "layer_b_curated_sec": 0.73204, |
| "layer_c_canonical_sec": 0.137382, |
| "layer_d_k562_sec": 0.689521, |
| "total_sec": 14.024763 |
| }, |
| "scregnet_geneformer": { |
| "layer_a_chipatlas_sec": 12.422738, |
| "layer_b_curated_sec": 0.718298, |
| "layer_c_canonical_sec": 0.137697, |
| "layer_d_k562_sec": 0.68274, |
| "total_sec": 13.961473 |
| }, |
| "scregnet_hgfb": { |
| "layer_a_chipatlas_sec": 12.635231, |
| "layer_b_curated_sec": 0.715656, |
| "layer_c_canonical_sec": 0.137819, |
| "layer_d_k562_sec": 0.682455, |
| "total_sec": 14.171161 |
| } |
| }, |
| "total_experiment_sec": 143.088647, |
| "notes": "Method runtime totals sum Layer A/B/C/D times only; all methods were evaluated sequentially on the same hardware." |
| } |
