Upload results/experiments/exp_1/canonical_tf_results.json with huggingface_hub

results/experiments/exp_1/canonical_tf_results.json

@@ -706,6 +706,119 @@
       }
     }
   },
+  "random_null": {
+    "Astrocyte": {
+      "recovered": 0,
+      "total": 3,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "SOX9": 610,
+        "NFIA": 297,
+        "NFIB": 298
+      }
+    },
+    "Endothel": {
+      "recovered": 0,
+      "total": 4,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "FLI1": 1503,
+        "ERG": 706,
+        "ETS1": 476,
+        "KLF2": 1540
+      }
+    },
+    "Excitatory neuron": {
+      "recovered": 0,
+      "total": 3,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "NEUROD2": 850,
+        "NEUROD6": 628,
+        "TBR1": 223
+      }
+    },
+    "Inhibitory neuron": {
+      "recovered": 0,
+      "total": 3,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "DLX1": 178,
+        "DLX2": 385,
+        "DLX5": 618
+      }
+    },
+    "Lymphocyte": {
+      "recovered": 0,
+      "total": 5,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "IKZF1": 814,
+        "TCF7": 1004,
+        "LEF1": 1289,
+        "GATA3": 988,
+        "TBX21": 919
+      }
+    },
+    "OPC": {
+      "recovered": 0,
+      "total": 3,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "OLIG2": 1234,
+        "SOX10": 711,
+        "NKX2-2": 966
+      }
+    },
+    "Oligodendrocyte": {
+      "recovered": 0,
+      "total": 4,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "SOX10": 191,
+        "MYRF": 254,
+        "OLIG1": 51,
+        "OLIG2": 162
+      }
+    },
+    "Pericyte": {
+      "recovered": 0,
+      "total": 1,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "NOTCH3": -1
+      }
+    },
+    "TAM": {
+      "recovered": 0,
+      "total": 4,
+      "fraction": 0.0,
+      "top_n": 20,
+      "recovered_names": [],
+      "canonical_ranks": {
+        "SPI1": 41,
+        "CEBPB": 726,
+        "IRF8": 1164,
+        "MAFB": 154
+      }
+    }
+  },
   "scenic": {
     "Astrocyte": {
       "recovered": 0,
@@ -934,18 +1047,17 @@
   },
   "scregnet_geneformer": {
     "Astrocyte": {
-      "recovered": 2,
+      "recovered": 1,
       "total": 3,
-      "fraction": 0.6667,
+      "fraction": 0.3333,
       "top_n": 20,
       "recovered_names": [
-        "NFIB",
-        "NFIA"
+        "NFIB"
       ],
       "canonical_ranks": {
-        "SOX9": 134,
-        "NFIA": 8,
-        "NFIB": 5
+        "SOX9": 32,
+        "NFIA": 501,
+        "NFIB": 1
       }
     },
     "Endothel": {
@@ -955,10 +1067,10 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "FLI1": 26,
-        "ERG": 35,
-        "ETS1": 32,
-        "KLF2": 176
+        "FLI1": 296,
+        "ERG": 859,
+        "ETS1": 924,
+        "KLF2": 886
       }
     },
     "Excitatory neuron": {
@@ -968,9 +1080,9 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "NEUROD2": 544,
-        "NEUROD6": 1122,
-        "TBR1": 748
+        "NEUROD2": 533,
+        "NEUROD6": 839,
+        "TBR1": 599
       }
     },
     "Inhibitory neuron": {
@@ -980,9 +1092,9 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "DLX1": 444,
-        "DLX2": 1034,
-        "DLX5": 684
+        "DLX1": 212,
+        "DLX2": 830,
+        "DLX5": 275
       }
     },
     "Lymphocyte": {
@@ -992,11 +1104,11 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "IKZF1": 35,
-        "TCF7": 326,
-        "LEF1": 235,
-        "GATA3": 331,
-        "TBX21": 258
+        "IKZF1": 182,
+        "TCF7": 241,
+        "LEF1": 85,
+        "GATA3": 99,
+        "TBX21": 680
       }
     },
     "OPC": {
@@ -1006,24 +1118,22 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "OLIG2": 180,
-        "SOX10": 170,
-        "NKX2-2": 396
+        "OLIG2": 854,
+        "SOX10": 619,
+        "NKX2-2": 895
       }
     },
     "Oligodendrocyte": {
-      "recovered": 1,
+      "recovered": 0,
       "total": 4,
-      "fraction": 0.25,
+      "fraction": 0.0,
       "top_n": 20,
-      "recovered_names": [
-        "MYRF"
-      ],
+      "recovered_names": [],
       "canonical_ranks": {
-        "SOX10": 87,
-        "MYRF": 8,
-        "OLIG1": 46,
-        "OLIG2": 394
+        "SOX10": 654,
+        "MYRF": 272,
+        "OLIG1": 206,
+        "OLIG2": 871
       }
     },
     "Pericyte": {
@@ -1037,50 +1147,43 @@
       }
     },
     "TAM": {
-      "recovered": 1,
+      "recovered": 0,
       "total": 4,
-      "fraction": 0.25,
+      "fraction": 0.0,
       "top_n": 20,
-      "recovered_names": [
-        "MAFB"
-      ],
+      "recovered_names": [],
       "canonical_ranks": {
-        "SPI1": 278,
-        "CEBPB": 142,
-        "IRF8": 179,
-        "MAFB": 16
+        "SPI1": 110,
+        "CEBPB": 951,
+        "IRF8": 598,
+        "MAFB": 118
       }
     }
   },
   "scregnet_hgfb": {
     "Astrocyte": {
-      "recovered": 2,
+      "recovered": 0,
       "total": 3,
-      "fraction": 0.6667,
+      "fraction": 0.0,
       "top_n": 20,
-      "recovered_names": [
-        "NFIA",
-        "NFIB"
-      ],
+      "recovered_names": [],
       "canonical_ranks": {
-        "SOX9": 215,
-        "NFIA": 4,
-        "NFIB": 7
+        "SOX9": 948,
+        "NFIA": 859,
+        "NFIB": 228
       }
     },
     "Endothel": {
-      "recovered": 1,
+      "recovered": 0,
       "total": 4,
-      "fraction": 0.25,
+      "fraction": 0.0,
       "top_n": 20,
-      "recovered_names": [
-        "ETS1"
-      ],
+      "recovered_names": [],
       "canonical_ranks": {
-        "FLI1": 49,
-        "ERG": 70,
-        "ETS1": 3,
-        "KLF2": 102
+        "FLI1": 39,
+        "ERG": 428,
+        "ETS1": 37,
+        "KLF2": 268
       }
     },
     "Excitatory neuron": {
@@ -1090,21 +1193,23 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "NEUROD2": 617,
-        "NEUROD6": 1160,
-        "TBR1": 751
+        "NEUROD2": 1011,
+        "NEUROD6": 1049,
+        "TBR1": 834
       }
     },
     "Inhibitory neuron": {
-      "recovered": 0,
+      "recovered": 1,
       "total": 3,
-      "fraction": 0.0,
+      "fraction": 0.3333,
       "top_n": 20,
-      "recovered_names": [],
+      "recovered_names": [
+        "DLX2"
+      ],
       "canonical_ranks": {
-        "DLX1": 477,
-        "DLX2": 973,
-        "DLX5": 761
+        "DLX1": 475,
+        "DLX2": 15,
+        "DLX5": 766
       }
     },
     "Lymphocyte": {
@@ -1114,11 +1219,11 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "IKZF1": 55,
-        "TCF7": 263,
-        "LEF1": 291,
-        "GATA3": 284,
-        "TBX21": 314
+        "IKZF1": 97,
+        "TCF7": 895,
+        "LEF1": 681,
+        "GATA3": 1005,
+        "TBX21": 660
       }
     },
     "OPC": {
@@ -1128,9 +1233,9 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "OLIG2": 236,
-        "SOX10": 338,
-        "NKX2-2": 372
+        "OLIG2": 860,
+        "SOX10": 836,
+        "NKX2-2": 302
       }
     },
     "Oligodendrocyte": {
@@ -1140,10 +1245,10 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "SOX10": 196,
-        "MYRF": 29,
-        "OLIG1": 126,
-        "OLIG2": 479
+        "SOX10": 861,
+        "MYRF": 981,
+        "OLIG1": 200,
+        "OLIG2": 887
       }
     },
     "Pericyte": {
@@ -1163,10 +1268,10 @@
       "top_n": 20,
       "recovered_names": [],
       "canonical_ranks": {
-        "SPI1": 178,
-        "CEBPB": 61,
-        "IRF8": 285,
-        "MAFB": 27
+        "SPI1": 975,
+        "CEBPB": 238,
+        "IRF8": 703,
+        "MAFB": 344
       }
     }
   }