source stringclasses 4
values | task_type stringclasses 5
values | instruction stringclasses 5
values | input stringlengths 108 11.9k | output stringlengths 28 12k |
|---|---|---|---|---|
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Add helpers to convert between different types of uncertainties
Currently there no easy way to convert from an arbitrary uncertainty class to a different uncertainty class. This would be useful to be able to pass NDData objects to external libraries/tools which assume, fo... | diff --git a/astropy/nddata/nduncertainty.py b/astropy/nddata/nduncertainty.py
--- a/astropy/nddata/nduncertainty.py
+++ b/astropy/nddata/nduncertainty.py
@@ -395,6 +395,40 @@ def _propagate_multiply(self, other_uncert, result_data, correlation):
def _propagate_divide(self, other_uncert, result_data, correlation):... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Can Table masking be turned off?
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CONTRIBUTING.md .
Please be sure to... | diff --git a/astropy/io/fits/connect.py b/astropy/io/fits/connect.py
--- a/astropy/io/fits/connect.py
+++ b/astropy/io/fits/connect.py
@@ -112,7 +112,8 @@ def _decode_mixins(tbl):
def read_table_fits(input, hdu=None, astropy_native=False, memmap=False,
- character_as_bytes=True, unit_parse_stric... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
SkyCoord in Table breaks aggregate on group_by
### Description, actual behaviour, reproduction
When putting a column of `SkyCoord`s in a `Table`, `aggregate` does not work on `group_by().groups`:
```python
from astropy.table import Table
import astropy.units as u
from as... | diff --git a/astropy/table/column.py b/astropy/table/column.py
--- a/astropy/table/column.py
+++ b/astropy/table/column.py
@@ -340,7 +340,9 @@ class ColumnInfo(BaseColumnInfo):
This is required when the object is used as a mixin column within a table,
but can be used as a general way to store meta information... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
The `where` keyword argument of `np.mean` is not supported for `astropy.units.Quantity` instances.
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github... | diff --git a/astropy/units/quantity.py b/astropy/units/quantity.py
--- a/astropy/units/quantity.py
+++ b/astropy/units/quantity.py
@@ -18,6 +18,7 @@
# LOCAL
from astropy import config as _config
+from astropy.utils.compat import NUMPY_LT_1_20, NUMPY_LT_1_22
from astropy.utils.compat.misc import override__dir__
fr... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Modeling's `separability_matrix` does not compute separability correctly for nested CompoundModels
Consider the following model:
```python
from astropy.modeling import models as m
from astropy.modeling.separable import separability_matrix
cm = m.Linear1D(10) & m.Linear1... | diff --git a/astropy/modeling/separable.py b/astropy/modeling/separable.py
--- a/astropy/modeling/separable.py
+++ b/astropy/modeling/separable.py
@@ -242,7 +242,7 @@ def _cstack(left, right):
cright = _coord_matrix(right, 'right', noutp)
else:
cright = np.zeros((noutp, right.shape[1]))
- ... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Convert CCDData to ImageHDU
### Description
As far as I can tell, currently there's no way to directly convert a `CCDData` object to an `ImageHDU` object. If we write it to a file using `CCDData.write()` it will always create a file where the first HDU is a `PrimaryHDU` t... | diff --git a/astropy/nddata/ccddata.py b/astropy/nddata/ccddata.py
--- a/astropy/nddata/ccddata.py
+++ b/astropy/nddata/ccddata.py
@@ -270,7 +270,8 @@ def uncertainty(self, value):
self._uncertainty = value
def to_hdu(self, hdu_mask='MASK', hdu_uncertainty='UNCERT',
- hdu_flags=None, w... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Incorrect ignored usage in `ModelBoundingBox`
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CONTRIBUTING.md .
Plea... | diff --git a/astropy/modeling/bounding_box.py b/astropy/modeling/bounding_box.py
--- a/astropy/modeling/bounding_box.py
+++ b/astropy/modeling/bounding_box.py
@@ -694,6 +694,12 @@ def _validate_dict(self, bounding_box: dict):
for key, value in bounding_box.items():
self[key] = value
+ @proper... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
TimeSeries: misleading exception when required column check fails.
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/C... | diff --git a/astropy/timeseries/core.py b/astropy/timeseries/core.py
--- a/astropy/timeseries/core.py
+++ b/astropy/timeseries/core.py
@@ -55,6 +55,13 @@ class BaseTimeSeries(QTable):
_required_columns_relax = False
def _check_required_columns(self):
+ def as_scalar_or_list_str(obj):
+ if ... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Time from astropy.time not precise
Hello,
I encounter difficulties with Time. I'm working on a package to perform photometry and occultation.
For this last case, data need times values accurately estimated. Of course, data coming from different camera will will have di... | diff --git a/astropy/time/core.py b/astropy/time/core.py
--- a/astropy/time/core.py
+++ b/astropy/time/core.py
@@ -655,9 +655,6 @@ def precision(self):
@precision.setter
def precision(self, val):
del self.cache
- if not isinstance(val, int) or val < 0 or val > 9:
- raise ValueError(... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Document reading True/False in ASCII table as bool not str
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CONTRIBUT... | diff --git a/astropy/io/ascii/core.py b/astropy/io/ascii/core.py
--- a/astropy/io/ascii/core.py
+++ b/astropy/io/ascii/core.py
@@ -1016,7 +1016,10 @@ class BaseOutputter:
"""Output table as a dict of column objects keyed on column name. The
table data are stored as plain python lists within the column object... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Register format ``html`` to ``Cosmology.write`` with nice mathjax
Cosmology can now read and write to files.
It would be nice to register with ``Cosmology.write`` a method for exporting a Cosmology to a HTML table.
There are good examples of IO with Cosmology at https://... | diff --git a/astropy/cosmology/io/__init__.py b/astropy/cosmology/io/__init__.py
--- a/astropy/cosmology/io/__init__.py
+++ b/astropy/cosmology/io/__init__.py
@@ -5,4 +5,4 @@
"""
# Import to register with the I/O machinery
-from . import cosmology, ecsv, mapping, model, row, table, yaml
+from . import cosmology, ec... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Add __array_func__ for astropy.time.Time
<!-- This comments are hidden when you submit the pull request,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CONTRIBUTING.md .
Pl... | diff --git a/astropy/time/core.py b/astropy/time/core.py
--- a/astropy/time/core.py
+++ b/astropy/time/core.py
@@ -31,6 +31,7 @@
# Import TimeFromEpoch to avoid breaking code that followed the old example of
# making a custom timescale in the documentation.
from .formats import TimeFromEpoch # noqa
+from .time_help... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Angle bug for (d, m, s) tuple input (deprecate dms_to_degrees)
`Angle` does not handle the sign correctly for a `(d, m, s)` tuple input if `d=0`:
```python
>>> from astropy.coordinates import Angle
>>> ang = Angle((-0, -42, -17), unit='deg')
>>> print(ang)
0d42m17s
>>> p... | diff --git a/astropy/coordinates/angle_formats.py b/astropy/coordinates/angle_formats.py
--- a/astropy/coordinates/angle_formats.py
+++ b/astropy/coordinates/angle_formats.py
@@ -27,6 +27,7 @@
IllegalMinuteWarning, IllegalMinuteError,
IllegalSecondWarning, IllegalSecondError)... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Structured column serialization round-trip fails with field name of "name"
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blo... | diff --git a/astropy/table/serialize.py b/astropy/table/serialize.py
--- a/astropy/table/serialize.py
+++ b/astropy/table/serialize.py
@@ -293,14 +293,18 @@ def _construct_mixin_from_obj_attrs_and_info(obj_attrs, info):
# untrusted code by only importing known astropy classes.
cls_full_name = obj_attrs.pop('_... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Consider removing auto-transform of structured column into NdarrayMixin
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/m... | diff --git a/astropy/table/table.py b/astropy/table/table.py
--- a/astropy/table/table.py
+++ b/astropy/table/table.py
@@ -1239,13 +1239,6 @@ def _convert_data_to_col(self, data, copy=True, default_name=None, dtype=None, n
f'{fully_qualified_name} '
'did... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
vstack'ing structured array tables fails with casting error
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CONTRIBU... | diff --git a/astropy/utils/metadata.py b/astropy/utils/metadata.py
--- a/astropy/utils/metadata.py
+++ b/astropy/utils/metadata.py
@@ -73,7 +73,7 @@ def dtype(arr):
dtype_bytes_or_chars(arr.dtype)]
arr_common = np.array([arr[0] for arr in arrs])
- return arr_common.dtype.str
+ retur... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Masked ``_array2string`` doesn't work on some structured arrays
### Description
The dispatch function ``_array2string `` in ``masked.function_helpers`` doesn't work on arrays with strutcured dtypes.
### Expected behavior
Masked arrays with structured dtypes can be prin... | diff --git a/astropy/utils/masked/function_helpers.py b/astropy/utils/masked/function_helpers.py
--- a/astropy/utils/masked/function_helpers.py
+++ b/astropy/utils/masked/function_helpers.py
@@ -877,13 +877,19 @@ class MaskedFormat:
"""
def __init__(self, format_function):
self.format_function = form... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
[Security] Jquery 3.1.1 is vulnerable to untrusted code execution
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CO... | diff --git a/astropy/table/jsviewer.py b/astropy/table/jsviewer.py
--- a/astropy/table/jsviewer.py
+++ b/astropy/table/jsviewer.py
@@ -15,7 +15,7 @@ class Conf(_config.ConfigNamespace):
"""
jquery_url = _config.ConfigItem(
- 'https://code.jquery.com/jquery-3.1.1.min.js',
+ 'https://code.jquery... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
TST: time/tests/test_precision.py failed in pyinstaller (computed error is different depending on the order of the arguments)
First failing log (2022-03-13): https://github.com/astropy/astropy/runs/5525474634
Last successful log (2022-03-12): https://github.com/astropy/a... | diff --git a/astropy/time/utils.py b/astropy/time/utils.py
--- a/astropy/time/utils.py
+++ b/astropy/time/utils.py
@@ -60,14 +60,16 @@ def day_frac(val1, val2, factor=None, divisor=None):
# get integer fraction
day = np.round(sum12)
- extra, frac = two_sum(sum12, -day)
- frac += extra + err12
- # O... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
rtol for FITSDiff not working as expected.
I have question about the rtol parameter for FITSDiff, when I create a report it appears that the numbers cited as being different are within the given relative tolerance. I couldn't figure out why so I thought this may be a bu... | diff --git a/astropy/io/fits/diff.py b/astropy/io/fits/diff.py
--- a/astropy/io/fits/diff.py
+++ b/astropy/io/fits/diff.py
@@ -1051,7 +1051,8 @@ def _report(self):
index = [x + 1 for x in reversed(index)]
self._writeln(f' Data differs at {index}:')
report_diff_values(values[0], va... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Can't convert a list of Astropy tables to a NumPy array of tables
I recently stumbled upon [a StackOverflow question](https://stackoverflow.com/questions/69414829/convert-a-list-of-astropy-table-in-a-numpy-array-of-astropy-table) where someone likes to convert a list of T... | diff --git a/astropy/table/table.py b/astropy/table/table.py
--- a/astropy/table/table.py
+++ b/astropy/table/table.py
@@ -1070,7 +1070,12 @@ def __array__(self, dtype=None):
supported and will raise a ValueError.
"""
if dtype is not None:
- raise ValueError('Datatype coercion is n... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Comparing Frame with data and SkyCoord with same data raises exception
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/ma... | diff --git a/astropy/coordinates/baseframe.py b/astropy/coordinates/baseframe.py
--- a/astropy/coordinates/baseframe.py
+++ b/astropy/coordinates/baseframe.py
@@ -1650,6 +1650,9 @@ def __eq__(self, value):
This implements strict equality and requires that the frames are
equivalent and that the represe... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
Inconsistent behavior of `world_to_pixel` in `SlicedLowLevelWCS`
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CO... | diff --git a/astropy/wcs/wcsapi/wrappers/sliced_wcs.py b/astropy/wcs/wcsapi/wrappers/sliced_wcs.py
--- a/astropy/wcs/wcsapi/wrappers/sliced_wcs.py
+++ b/astropy/wcs/wcsapi/wrappers/sliced_wcs.py
@@ -243,6 +243,8 @@ def pixel_to_world_values(self, *pixel_arrays):
return world_arrays
def world_to_pixel_va... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
`Quantity.__ilshift__` throws exception with `dtype=int`
<!-- This comments are hidden when you submit the issue,
so you do not need to remove them! -->
<!-- Please be sure to check out our contributing guidelines,
https://github.com/astropy/astropy/blob/main/CONTRIBUTIN... | diff --git a/astropy/units/quantity.py b/astropy/units/quantity.py
--- a/astropy/units/quantity.py
+++ b/astropy/units/quantity.py
@@ -1088,21 +1088,23 @@ def __ilshift__(self, other):
try:
other = Unit(other, parse_strict='silent')
except UnitTypeError:
- return NotImplemented... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
wcslint crashes on valid WCS
`wcslint` calls an underlying function here:
https://github.com/astropy/astropy/blob/8c0581fc68ca1f970d7f4e6c9ca9f2b9567d7b4c/astropy/wcs/wcs.py#L3430
Looks like all it does is tries to create a `WCS` object with the header and report warnin... | diff --git a/astropy/wcs/wcs.py b/astropy/wcs/wcs.py
--- a/astropy/wcs/wcs.py
+++ b/astropy/wcs/wcs.py
@@ -3528,7 +3528,7 @@ def __repr__(self):
"always", FITSFixedWarning, append=True)
try:
- WCS(hdu.header,
+ WCS(hdu.header, hdulist,
... |
swebench | bug_fixing | Fix the bug described in the repository issue. | Repository:
astropy/astropy
Problem Statement:
`Time` parses fractional days in year-month-day format incorrectly
`Time('2017-08-24.25')` results in `2017-08-24 00:00:00.250`: the fractional days are interpreted as fractional seconds (`2017-08-24 06:00:00` is what I hoped for).
The format `2017-08-24.25` is perhaps n... | diff --git a/astropy/time/formats.py b/astropy/time/formats.py
--- a/astropy/time/formats.py
+++ b/astropy/time/formats.py
@@ -1294,13 +1294,15 @@ def parse_string(self, timestr, subfmts):
try:
idot = timestr.rindex('.')
except Exception:
- fracsec = 0.0
+ timestr_ha... |
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