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PmagPy/PmagPy | dialogs/grid_frame3.py | GridBuilder.save_grid_data | def save_grid_data(self):
"""
Save grid data in the data object
"""
if not self.grid.changes:
print('-I- No changes to save')
return
starred_cols = self.grid.remove_starred_labels()
# locks in value in cell currently edited
self.grid.SaveE... | python | def save_grid_data(self):
"""
Save grid data in the data object
"""
if not self.grid.changes:
print('-I- No changes to save')
return
starred_cols = self.grid.remove_starred_labels()
# locks in value in cell currently edited
self.grid.SaveE... | [
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PmagPy/PmagPy | dialogs/grid_frame3.py | GridBuilder.fill_defaults | def fill_defaults(self):
"""
Fill in self.grid with default values in certain columns.
Only fill in new values if grid is missing those values.
"""
defaults = {'result_quality': 'g',
'result_type': 'i',
'orientation_quality': 'g',
... | python | def fill_defaults(self):
"""
Fill in self.grid with default values in certain columns.
Only fill in new values if grid is missing those values.
"""
defaults = {'result_quality': 'g',
'result_type': 'i',
'orientation_quality': 'g',
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PmagPy/PmagPy | dialogs/grid_frame3.py | GridBuilder.get_result_children | def get_result_children(self, result_data):
"""
takes in dict in form of {'er_specimen_names': 'name1:name2:name3'}
and so forth.
returns lists of specimens, samples, sites, and locations
"""
specimens, samples, sites, locations = "", "", "", ""
children = {'speci... | python | def get_result_children(self, result_data):
"""
takes in dict in form of {'er_specimen_names': 'name1:name2:name3'}
and so forth.
returns lists of specimens, samples, sites, and locations
"""
specimens, samples, sites, locations = "", "", "", ""
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PmagPy/PmagPy | programs/deprecated/specimens_results_magic.py | main | def main():
"""
NAME
specimens_results_magic.py
DESCRIPTION
combines pmag_specimens.txt file with age, location, acceptance criteria and
outputs pmag_results table along with other MagIC tables necessary for uploading to the database
SYNTAX
specimens_results_magic.py [command line opti... | python | def main():
"""
NAME
specimens_results_magic.py
DESCRIPTION
combines pmag_specimens.txt file with age, location, acceptance criteria and
outputs pmag_results table along with other MagIC tables necessary for uploading to the database
SYNTAX
specimens_results_magic.py [command line opti... | [
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specimens_results_magic.py
DESCRIPTION
combines pmag_specimens.txt file with age, location, acceptance criteria and
outputs pmag_results table along with other MagIC tables necessary for uploading to the database
SYNTAX
specimens_results_magic.py [command line options]
OPTIONS
-h... | [
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PmagPy/PmagPy | programs/eqarea_magic.py | main | def main():
"""
NAME
eqarea_magic.py
DESCRIPTION
makes equal area projections from declination/inclination data
SYNTAX
eqarea_magic.py [command line options]
INPUT
takes magic formatted sites, samples, specimens, or measurements
OPTIONS
-h prints help me... | python | def main():
"""
NAME
eqarea_magic.py
DESCRIPTION
makes equal area projections from declination/inclination data
SYNTAX
eqarea_magic.py [command line options]
INPUT
takes magic formatted sites, samples, specimens, or measurements
OPTIONS
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eqarea_magic.py
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makes equal area projections from declination/inclination data
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eqarea_magic.py [command line options]
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takes magic formatted sites, samples, specimens, or measurements
OPTIONS
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.InitUI | def InitUI(self):
"""
initialize window
"""
self.main_sizer = wx.BoxSizer(wx.VERTICAL)
self.init_grid_headers()
self.grid_builder = GridBuilder(self.er_magic, self.grid_type, self.grid_headers,
self.panel, self.parent_type)
... | python | def InitUI(self):
"""
initialize window
"""
self.main_sizer = wx.BoxSizer(wx.VERTICAL)
self.init_grid_headers()
self.grid_builder = GridBuilder(self.er_magic, self.grid_type, self.grid_headers,
self.panel, self.parent_type)
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.do_fit | def do_fit(self, event):
"""
Re-fit the window to the size of the content.
"""
#self.grid.ShowScrollbars(wx.SHOW_SB_NEVER, wx.SHOW_SB_NEVER)
if event:
event.Skip()
self.main_sizer.Fit(self)
disp_size = wx.GetDisplaySize()
actual_size = self.Get... | python | def do_fit(self, event):
"""
Re-fit the window to the size of the content.
"""
#self.grid.ShowScrollbars(wx.SHOW_SB_NEVER, wx.SHOW_SB_NEVER)
if event:
event.Skip()
self.main_sizer.Fit(self)
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.toggle_ages | def toggle_ages(self, event):
"""
Switch the type of grid between site/sample
(Users may add ages at either level)
"""
if self.grid.changes:
self.onSave(None)
label = event.GetEventObject().Label
self.er_magic.age_type = label
self.grid.Destr... | python | def toggle_ages(self, event):
"""
Switch the type of grid between site/sample
(Users may add ages at either level)
"""
if self.grid.changes:
self.onSave(None)
label = event.GetEventObject().Label
self.er_magic.age_type = label
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.remove_col_label | def remove_col_label(self, event):#, include_pmag=True):
"""
check to see if column is required
if it is not, delete it from grid
"""
er_possible_headers = self.grid_headers[self.grid_type]['er'][2]
pmag_possible_headers = self.grid_headers[self.grid_type]['pmag'][2]
... | python | def remove_col_label(self, event):#, include_pmag=True):
"""
check to see if column is required
if it is not, delete it from grid
"""
er_possible_headers = self.grid_headers[self.grid_type]['er'][2]
pmag_possible_headers = self.grid_headers[self.grid_type]['pmag'][2]
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.on_add_cols | def on_add_cols(self, event):
"""
Show simple dialog that allows user to add a new column name
"""
col_labels = self.grid.col_labels
# do not list headers that are already column labels in the grid
er_items = [head for head in self.grid_headers[self.grid_type]['er'][2] if... | python | def on_add_cols(self, event):
"""
Show simple dialog that allows user to add a new column name
"""
col_labels = self.grid.col_labels
# do not list headers that are already column labels in the grid
er_items = [head for head in self.grid_headers[self.grid_type]['er'][2] if... | [
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.add_new_grid_headers | def add_new_grid_headers(self, new_headers, er_items, pmag_items):
"""
Add in all user-added headers.
If those new headers depend on other headers, add the other headers too.
"""
def add_pmag_reqd_headers():
if self.grid_type == 'result':
return []
... | python | def add_new_grid_headers(self, new_headers, er_items, pmag_items):
"""
Add in all user-added headers.
If those new headers depend on other headers, add the other headers too.
"""
def add_pmag_reqd_headers():
if self.grid_type == 'result':
return []
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.on_remove_cols | def on_remove_cols(self, event):
"""
enter 'remove columns' mode
"""
# open the help message
self.toggle_help(event=None, mode='open')
# first unselect any selected cols/cells
self.remove_cols_mode = True
self.grid.ClearSelection()
self.remove_cols... | python | def on_remove_cols(self, event):
"""
enter 'remove columns' mode
"""
# open the help message
self.toggle_help(event=None, mode='open')
# first unselect any selected cols/cells
self.remove_cols_mode = True
self.grid.ClearSelection()
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.on_remove_row | def on_remove_row(self, event, row_num=-1):
"""
Remove specified grid row.
If no row number is given, remove the last row.
"""
if row_num == -1:
default = (255, 255, 255, 255)
# unhighlight any selected rows:
for row in self.selected_rows:
... | python | def on_remove_row(self, event, row_num=-1):
"""
Remove specified grid row.
If no row number is given, remove the last row.
"""
if row_num == -1:
default = (255, 255, 255, 255)
# unhighlight any selected rows:
for row in self.selected_rows:
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridFrame.exit_col_remove_mode | def exit_col_remove_mode(self, event):
"""
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"""
# close help messge
self.toggle_help(event=None, mode='close')
# update mode
self.remove_cols_mode = False
# re-enable all buttons
for btn in [self.add_cols_bu... | python | def exit_col_remove_mode(self, event):
"""
go back from 'remove cols' mode to normal
"""
# close help messge
self.toggle_help(event=None, mode='close')
# update mode
self.remove_cols_mode = False
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridBuilder.make_grid | def make_grid(self, incl_pmag=True):
"""
return grid
"""
if incl_pmag and self.grid_type in self.er_magic.incl_pmag_data:
incl_pmag = True
else:
incl_pmag = False
er_header = self.grid_headers[self.grid_type]['er'][0]
if incl_pmag:
... | python | def make_grid(self, incl_pmag=True):
"""
return grid
"""
if incl_pmag and self.grid_type in self.er_magic.incl_pmag_data:
incl_pmag = True
else:
incl_pmag = False
er_header = self.grid_headers[self.grid_type]['er'][0]
if incl_pmag:
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PmagPy/PmagPy | dialogs/grid_frame2.py | GridBuilder.save_grid_data | def save_grid_data(self):
"""
Save grid data in the data object
"""
if not self.grid.changes:
print('-I- No changes to save')
return
if self.grid_type == 'age':
age_data_type = self.er_magic.age_type
self.er_magic.write_ages = True... | python | def save_grid_data(self):
"""
Save grid data in the data object
"""
if not self.grid.changes:
print('-I- No changes to save')
return
if self.grid_type == 'age':
age_data_type = self.er_magic.age_type
self.er_magic.write_ages = True... | [
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PmagPy/PmagPy | programs/hysteresis_magic2.py | main | def main():
"""
NAME
hysteresis_magic.py
DESCRIPTION
calculates hystereis parameters and saves them in rmag_hystereis format file
makes plots if option selected
SYNTAX
hysteresis_magic.py [command line options]
OPTIONS
-h prints help message and quits
... | python | def main():
"""
NAME
hysteresis_magic.py
DESCRIPTION
calculates hystereis parameters and saves them in rmag_hystereis format file
makes plots if option selected
SYNTAX
hysteresis_magic.py [command line options]
OPTIONS
-h prints help message and quits
... | [
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hysteresis_magic.py
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calculates hystereis parameters and saves them in rmag_hystereis format file
makes plots if option selected
SYNTAX
hysteresis_magic.py [command line options]
OPTIONS
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PmagPy/PmagPy | programs/mst_magic.py | main | def main():
"""
NAME
mst_magic.py
DESCRIPTION
converts MsT data (T,M) to measurements format files
SYNTAX
mst_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-usr USER: identify user, default is ""
-f FILE: specify T... | python | def main():
"""
NAME
mst_magic.py
DESCRIPTION
converts MsT data (T,M) to measurements format files
SYNTAX
mst_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
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converts MsT data (T,M) to measurements format files
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PmagPy/PmagPy | programs/deprecated/parse_measurements.py | main | def main():
"""
NAME
parse_measurements.py
DESCRIPTION
takes measurments file and creates specimen and instrument files
SYNTAX
parse_measurements.py [command line options]
OPTIONS
-h prints help message and quits
-f FILE magic_measurements input file, defau... | python | def main():
"""
NAME
parse_measurements.py
DESCRIPTION
takes measurments file and creates specimen and instrument files
SYNTAX
parse_measurements.py [command line options]
OPTIONS
-h prints help message and quits
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parse_measurements.py
DESCRIPTION
takes measurments file and creates specimen and instrument files
SYNTAX
parse_measurements.py [command line options]
OPTIONS
-h prints help message and quits
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PmagPy/PmagPy | programs/conversion_scripts2/utrecht_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
utrecht_magic.py
DESCRIPTION
converts Utrecht magnetometer data files to magic_measurements files
SYNTAX
utrecht_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: specify ... | python | def main(command_line=True, **kwargs):
"""
NAME
utrecht_magic.py
DESCRIPTION
converts Utrecht magnetometer data files to magic_measurements files
SYNTAX
utrecht_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: specify ... | [
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utrecht_magic.py
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converts Utrecht magnetometer data files to magic_measurements files
SYNTAX
utrecht_magic.py [command line options]
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs2.py | convert_HUJI_files_to_MagIC.on_okButton | def on_okButton(self, event):
"""
grab user input values, format them, and run huji_magic.py with the appropriate flags
"""
os.chdir(self.WD)
options = {}
HUJI_file = self.bSizer0.return_value()
if not HUJI_file:
pw.simple_warning("You must select a HU... | python | def on_okButton(self, event):
"""
grab user input values, format them, and run huji_magic.py with the appropriate flags
"""
os.chdir(self.WD)
options = {}
HUJI_file = self.bSizer0.return_value()
if not HUJI_file:
pw.simple_warning("You must select a HU... | [
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs2.py | convert_Utrecht_files_to_MagIC.on_okButton | def on_okButton(self, event):
"""
Complies information input in GUI into a kwargs dictionary which can
be passed into the utrecht_magic script and run to output magic files
"""
os.chdir(self.WD)
options_dict = {}
wd = self.WD
options_dict['dir_path'] = wd
... | python | def on_okButton(self, event):
"""
Complies information input in GUI into a kwargs dictionary which can
be passed into the utrecht_magic script and run to output magic files
"""
os.chdir(self.WD)
options_dict = {}
wd = self.WD
options_dict['dir_path'] = wd
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PmagPy/PmagPy | dialogs/pmag_gui_dialogs2.py | OrientFrameGrid3.on_m_calc_orient | def on_m_calc_orient(self,event):
'''
This fucntion does exactly what the 'import orientation' fuction does in MagIC.py
after some dialog boxes the function calls orientation_magic.py
'''
# first see if demag_orient.txt
self.on_m_save_file(None)
orient_convention_... | python | def on_m_calc_orient(self,event):
'''
This fucntion does exactly what the 'import orientation' fuction does in MagIC.py
after some dialog boxes the function calls orientation_magic.py
'''
# first see if demag_orient.txt
self.on_m_save_file(None)
orient_convention_... | [
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PmagPy/PmagPy | programs/eigs_s.py | main | def main():
"""
NAME
eigs_s.py
DESCRIPTION
converts eigenparamters format data to s format
SYNTAX
eigs_s.py [-h][-i][command line options][<filename]
OPTIONS
-h prints help message and quits
-i allows interactive file name entry
-f FILE, specifies input file name
... | python | def main():
"""
NAME
eigs_s.py
DESCRIPTION
converts eigenparamters format data to s format
SYNTAX
eigs_s.py [-h][-i][command line options][<filename]
OPTIONS
-h prints help message and quits
-i allows interactive file name entry
-f FILE, specifies input file name
... | [
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eigs_s.py
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converts eigenparamters format data to s format
SYNTAX
eigs_s.py [-h][-i][command line options][<filename]
OPTIONS
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PmagPy/PmagPy | programs/ani_depthplot.py | main | def main():
"""
NAME
ani_depthplot.py
DESCRIPTION
plots tau, V3_inc, V1_dec, P and chi versus core_depth
SYNTAX
ani_depthplot.py [command line optins]
# or, for Anaconda users:
ani_depthplot_anaconda [command line options]
OPTIONS
-h prints help me... | python | def main():
"""
NAME
ani_depthplot.py
DESCRIPTION
plots tau, V3_inc, V1_dec, P and chi versus core_depth
SYNTAX
ani_depthplot.py [command line optins]
# or, for Anaconda users:
ani_depthplot_anaconda [command line options]
OPTIONS
-h prints help me... | [
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ani_depthplot.py
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plots tau, V3_inc, V1_dec, P and chi versus core_depth
SYNTAX
ani_depthplot.py [command line optins]
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_numpy_dtype | def get_numpy_dtype(obj):
"""Return NumPy data type associated to obj
Return None if NumPy is not available
or if obj is not a NumPy array or scalar"""
if ndarray is not FakeObject:
# NumPy is available
import numpy as np
if isinstance(obj, np.generic) or isinstance(obj, np.ndarr... | python | def get_numpy_dtype(obj):
"""Return NumPy data type associated to obj
Return None if NumPy is not available
or if obj is not a NumPy array or scalar"""
if ndarray is not FakeObject:
# NumPy is available
import numpy as np
if isinstance(obj, np.generic) or isinstance(obj, np.ndarr... | [
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | address | def address(obj):
"""Return object address as a string: '<classname @ address>'"""
return "<%s @ %s>" % (obj.__class__.__name__,
hex(id(obj)).upper().replace('X', 'x')) | python | def address(obj):
"""Return object address as a string: '<classname @ address>'"""
return "<%s @ %s>" % (obj.__class__.__name__,
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_size | def get_size(item):
"""Return size of an item of arbitrary type"""
if isinstance(item, (list, set, tuple, dict)):
return len(item)
elif isinstance(item, (ndarray, MaskedArray)):
return item.shape
elif isinstance(item, Image):
return item.size
if isinstance(item, (DataFrame, I... | python | def get_size(item):
"""Return size of an item of arbitrary type"""
if isinstance(item, (list, set, tuple, dict)):
return len(item)
elif isinstance(item, (ndarray, MaskedArray)):
return item.shape
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return item.size
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_object_attrs | def get_object_attrs(obj):
"""
Get the attributes of an object using dir.
This filters protected attributes
"""
attrs = [k for k in dir(obj) if not k.startswith('__')]
if not attrs:
attrs = dir(obj)
return attrs | python | def get_object_attrs(obj):
"""
Get the attributes of an object using dir.
This filters protected attributes
"""
attrs = [k for k in dir(obj) if not k.startswith('__')]
if not attrs:
attrs = dir(obj)
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | str_to_timedelta | def str_to_timedelta(value):
"""Convert a string to a datetime.timedelta value.
The following strings are accepted:
- 'datetime.timedelta(1, 5, 12345)'
- 'timedelta(1, 5, 12345)'
- '(1, 5, 12345)'
- '1, 5, 12345'
- '1'
if there are less then three parameters, the m... | python | def str_to_timedelta(value):
"""Convert a string to a datetime.timedelta value.
The following strings are accepted:
- 'datetime.timedelta(1, 5, 12345)'
- 'timedelta(1, 5, 12345)'
- '(1, 5, 12345)'
- '1, 5, 12345'
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_color_name | def get_color_name(value):
"""Return color name depending on value type"""
if not is_known_type(value):
return CUSTOM_TYPE_COLOR
for typ, name in list(COLORS.items()):
if isinstance(value, typ):
return name
else:
np_dtype = get_numpy_dtype(value)
if np_dtype i... | python | def get_color_name(value):
"""Return color name depending on value type"""
if not is_known_type(value):
return CUSTOM_TYPE_COLOR
for typ, name in list(COLORS.items()):
if isinstance(value, typ):
return name
else:
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | sort_against | def sort_against(list1, list2, reverse=False):
"""
Arrange items of list1 in the same order as sorted(list2).
In other words, apply to list1 the permutation which takes list2
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"""
try:
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | default_display | def default_display(value, with_module=True):
"""Default display for unknown objects."""
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try:
name = object_type.__name__
module = object_type.__module__
if with_module:
return name + ' object of ' + module + ' module'
else:
r... | python | def default_display(value, with_module=True):
"""Default display for unknown objects."""
object_type = type(value)
try:
name = object_type.__name__
module = object_type.__module__
if with_module:
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | collections_display | def collections_display(value, level):
"""Display for collections (i.e. list, set, tuple and dict)."""
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is_set = isinstance(value, set)
# Get elements
if is_dict:
elements = iteritems(value)
else:
elements = value
# Truncate values
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"""Display for collections (i.e. list, set, tuple and dict)."""
is_dict = isinstance(value, dict)
is_set = isinstance(value, set)
# Get elements
if is_dict:
elements = iteritems(value)
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | value_to_display | def value_to_display(value, minmax=False, level=0):
"""Convert value for display purpose"""
# To save current Numpy printoptions
np_printoptions = FakeObject
try:
numeric_numpy_types = (int64, int32, int16, int8,
uint64, uint32, uint16, uint8,
... | python | def value_to_display(value, minmax=False, level=0):
"""Convert value for display purpose"""
# To save current Numpy printoptions
np_printoptions = FakeObject
try:
numeric_numpy_types = (int64, int32, int16, int8,
uint64, uint32, uint16, uint8,
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | display_to_value | def display_to_value(value, default_value, ignore_errors=True):
"""Convert back to value"""
from qtpy.compat import from_qvariant
value = from_qvariant(value, to_text_string)
try:
np_dtype = get_numpy_dtype(default_value)
if isinstance(default_value, bool):
# We must test for... | python | def display_to_value(value, default_value, ignore_errors=True):
"""Convert back to value"""
from qtpy.compat import from_qvariant
value = from_qvariant(value, to_text_string)
try:
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_type_string | def get_type_string(item):
"""Return type string of an object."""
if isinstance(item, DataFrame):
return "DataFrame"
if isinstance(item, Index):
return type(item).__name__
if isinstance(item, Series):
return "Series"
found = re.findall(r"<(?:type|class) '(\S*)'>",
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"""Return type string of an object."""
if isinstance(item, DataFrame):
return "DataFrame"
if isinstance(item, Index):
return type(item).__name__
if isinstance(item, Series):
return "Series"
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_human_readable_type | def get_human_readable_type(item):
"""Return human-readable type string of an item"""
if isinstance(item, (ndarray, MaskedArray)):
return item.dtype.name
elif isinstance(item, Image):
return "Image"
else:
text = get_type_string(item)
if text is None:
text = to... | python | def get_human_readable_type(item):
"""Return human-readable type string of an item"""
if isinstance(item, (ndarray, MaskedArray)):
return item.dtype.name
elif isinstance(item, Image):
return "Image"
else:
text = get_type_string(item)
if text is None:
text = to... | [
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | is_supported | def is_supported(value, check_all=False, filters=None, iterate=False):
"""Return True if the value is supported, False otherwise"""
assert filters is not None
if value is None:
return True
if not is_editable_type(value):
return False
elif not isinstance(value, filters):
retur... | python | def is_supported(value, check_all=False, filters=None, iterate=False):
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if value is None:
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if not is_editable_type(value):
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | globalsfilter | def globalsfilter(input_dict, check_all=False, filters=None,
exclude_private=None, exclude_capitalized=None,
exclude_uppercase=None, exclude_unsupported=None,
excluded_names=None):
"""Keep only objects that can be pickled"""
output_dict = {}
for key, val... | python | def globalsfilter(input_dict, check_all=False, filters=None,
exclude_private=None, exclude_capitalized=None,
exclude_uppercase=None, exclude_unsupported=None,
excluded_names=None):
"""Keep only objects that can be pickled"""
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_supported_types | def get_supported_types():
"""
Return a dictionnary containing types lists supported by the
namespace browser.
Note:
If you update this list, don't forget to update variablexplorer.rst
in spyder-docs
"""
from datetime import date, timedelta
editable_types = [int, float, complex, lis... | python | def get_supported_types():
"""
Return a dictionnary containing types lists supported by the
namespace browser.
Note:
If you update this list, don't forget to update variablexplorer.rst
in spyder-docs
"""
from datetime import date, timedelta
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | get_remote_data | def get_remote_data(data, settings, mode, more_excluded_names=None):
"""
Return globals according to filter described in *settings*:
* data: data to be filtered (dictionary)
* settings: variable explorer settings (dictionary)
* mode (string): 'editable' or 'picklable'
* more_excl... | python | def get_remote_data(data, settings, mode, more_excluded_names=None):
"""
Return globals according to filter described in *settings*:
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spyder-ide/spyder-kernels | spyder_kernels/utils/nsview.py | make_remote_view | def make_remote_view(data, settings, more_excluded_names=None):
"""
Make a remote view of dictionary *data*
-> globals explorer
"""
data = get_remote_data(data, settings, mode='editable',
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remote = {}
for key, value in list(d... | python | def make_remote_view(data, settings, more_excluded_names=None):
"""
Make a remote view of dictionary *data*
-> globals explorer
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data = get_remote_data(data, settings, mode='editable',
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._pdb_frame | def _pdb_frame(self):
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if self._pdb_obj is not None and self._pdb_obj.curframe is not None:
return self._pdb_obj.curframe | python | def _pdb_frame(self):
"""Return current Pdb frame if there is any"""
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.get_namespace_view | def get_namespace_view(self):
"""
Return the namespace view
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{'a': {'color': '#800000', 'size': 1, 'type': 'str', 'view': '1'}}
Here:
* 'a' is the variable name
* 'color' is the color used to show it
* 's... | python | def get_namespace_view(self):
"""
Return the namespace view
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.get_var_properties | def get_var_properties(self):
"""
Get some properties of the variables in the current
namespace
"""
from spyder_kernels.utils.nsview import get_remote_data
settings = self.namespace_view_settings
if settings:
ns = self._get_current_namespace()
... | python | def get_var_properties(self):
"""
Get some properties of the variables in the current
namespace
"""
from spyder_kernels.utils.nsview import get_remote_data
settings = self.namespace_view_settings
if settings:
ns = self._get_current_namespace()
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.send_spyder_msg | def send_spyder_msg(self, spyder_msg_type, content=None, data=None):
"""
Publish custom messages to the Spyder frontend.
Parameters
----------
spyder_msg_type: str
The spyder message type
content: dict
The (JSONable) content of the message
... | python | def send_spyder_msg(self, spyder_msg_type, content=None, data=None):
"""
Publish custom messages to the Spyder frontend.
Parameters
----------
spyder_msg_type: str
The spyder message type
content: dict
The (JSONable) content of the message
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.get_value | def get_value(self, name):
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ns = self._get_current_namespace()
value = ns[name]
try:
self.send_spyder_msg('data', data=value)
except:
# * There is no need to inform users about
# these errors.
# * ... | python | def get_value(self, name):
"""Get the value of a variable"""
ns = self._get_current_namespace()
value = ns[name]
try:
self.send_spyder_msg('data', data=value)
except:
# * There is no need to inform users about
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.set_value | def set_value(self, name, value, PY2_frontend):
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# We send serialized values in a list of one element
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.remove_value | def remove_value(self, name):
"""Remove a variable"""
ns = self._get_reference_namespace(name)
ns.pop(name) | python | def remove_value(self, name):
"""Remove a variable"""
ns = self._get_reference_namespace(name)
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.copy_value | def copy_value(self, orig_name, new_name):
"""Copy a variable"""
ns = self._get_reference_namespace(orig_name)
ns[new_name] = ns[orig_name] | python | def copy_value(self, orig_name, new_name):
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.load_data | def load_data(self, filename, ext):
"""Load data from filename"""
from spyder_kernels.utils.iofuncs import iofunctions
from spyder_kernels.utils.misc import fix_reference_name
glbs = self._mglobals()
load_func = iofunctions.load_funcs[ext]
data, error_message = load_fun... | python | def load_data(self, filename, ext):
"""Load data from filename"""
from spyder_kernels.utils.iofuncs import iofunctions
from spyder_kernels.utils.misc import fix_reference_name
glbs = self._mglobals()
load_func = iofunctions.load_funcs[ext]
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.save_namespace | def save_namespace(self, filename):
"""Save namespace into filename"""
from spyder_kernels.utils.nsview import get_remote_data
from spyder_kernels.utils.iofuncs import iofunctions
ns = self._get_current_namespace()
settings = self.namespace_view_settings
data = get_remot... | python | def save_namespace(self, filename):
"""Save namespace into filename"""
from spyder_kernels.utils.nsview import get_remote_data
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ns = self._get_current_namespace()
settings = self.namespace_view_settings
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.publish_pdb_state | def publish_pdb_state(self):
"""
Publish Variable Explorer state and Pdb step through
send_spyder_msg.
"""
if self._pdb_obj and self._do_publish_pdb_state:
state = dict(namespace_view = self.get_namespace_view(),
var_properties = self.get_var_... | python | def publish_pdb_state(self):
"""
Publish Variable Explorer state and Pdb step through
send_spyder_msg.
"""
if self._pdb_obj and self._do_publish_pdb_state:
state = dict(namespace_view = self.get_namespace_view(),
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.is_defined | def is_defined(self, obj, force_import=False):
"""Return True if object is defined in current namespace"""
from spyder_kernels.utils.dochelpers import isdefined
ns = self._get_current_namespace(with_magics=True)
return isdefined(obj, force_import=force_import, namespace=ns) | python | def is_defined(self, obj, force_import=False):
"""Return True if object is defined in current namespace"""
from spyder_kernels.utils.dochelpers import isdefined
ns = self._get_current_namespace(with_magics=True)
return isdefined(obj, force_import=force_import, namespace=ns) | [
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.get_doc | def get_doc(self, objtxt):
"""Get object documentation dictionary"""
try:
import matplotlib
matplotlib.rcParams['docstring.hardcopy'] = True
except:
pass
from spyder_kernels.utils.dochelpers import getdoc
obj, valid = self._eval(objtxt)
... | python | def get_doc(self, objtxt):
"""Get object documentation dictionary"""
try:
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matplotlib.rcParams['docstring.hardcopy'] = True
except:
pass
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obj, valid = self._eval(objtxt)
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel.get_source | def get_source(self, objtxt):
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obj, valid = self._eval(objtxt)
if valid:
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"""Get object source"""
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if valid:
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._get_current_namespace | def _get_current_namespace(self, with_magics=False):
"""
Return current namespace
This is globals() if not debugging, or a dictionary containing
both locals() and globals() for current frame when debugging
"""
ns = {}
glbs = self._mglobals()
if self._pdb... | python | def _get_current_namespace(self, with_magics=False):
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._get_reference_namespace | def _get_reference_namespace(self, name):
"""
Return namespace where reference name is defined
It returns the globals() if reference has not yet been defined
"""
glbs = self._mglobals()
if self._pdb_frame is None:
return glbs
else:
lcls = ... | python | def _get_reference_namespace(self, name):
"""
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._mglobals | def _mglobals(self):
"""Return current globals -- handles Pdb frames"""
if self._pdb_frame is not None:
return self._pdb_frame.f_globals
else:
return self.shell.user_ns | python | def _mglobals(self):
"""Return current globals -- handles Pdb frames"""
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return self._pdb_frame.f_globals
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._is_image | def _is_image(self, var):
"""Return True if variable is a PIL.Image image"""
try:
from PIL import Image
return isinstance(var, Image.Image)
except:
return False | python | def _is_image(self, var):
"""Return True if variable is a PIL.Image image"""
try:
from PIL import Image
return isinstance(var, Image.Image)
except:
return False | [
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._set_spyder_breakpoints | def _set_spyder_breakpoints(self, breakpoints):
"""Set all Spyder breakpoints in an active pdb session"""
if not self._pdb_obj:
return
# Breakpoints come serialized from Spyder. We send them
# in a list of one element to be able to send them at all
# in Python 2
... | python | def _set_spyder_breakpoints(self, breakpoints):
"""Set all Spyder breakpoints in an active pdb session"""
if not self._pdb_obj:
return
# Breakpoints come serialized from Spyder. We send them
# in a list of one element to be able to send them at all
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._eval | def _eval(self, text):
"""
Evaluate text and return (obj, valid)
where *obj* is the object represented by *text*
and *valid* is True if object evaluation did not raise any exception
"""
from spyder_kernels.py3compat import is_text_string
assert is_text_string(tex... | python | def _eval(self, text):
"""
Evaluate text and return (obj, valid)
where *obj* is the object represented by *text*
and *valid* is True if object evaluation did not raise any exception
"""
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._set_mpl_backend | def _set_mpl_backend(self, backend, pylab=False):
"""
Set a backend for Matplotlib.
backend: A parameter that can be passed to %matplotlib
(e.g. 'inline' or 'tk').
"""
import traceback
from IPython.core.getipython import get_ipython
generic_erro... | python | def _set_mpl_backend(self, backend, pylab=False):
"""
Set a backend for Matplotlib.
backend: A parameter that can be passed to %matplotlib
(e.g. 'inline' or 'tk').
"""
import traceback
from IPython.core.getipython import get_ipython
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._load_autoreload_magic | def _load_autoreload_magic(self):
"""Load %autoreload magic."""
from IPython.core.getipython import get_ipython
try:
get_ipython().run_line_magic('reload_ext', 'autoreload')
get_ipython().run_line_magic('autoreload', '2')
except Exception:
pass | python | def _load_autoreload_magic(self):
"""Load %autoreload magic."""
from IPython.core.getipython import get_ipython
try:
get_ipython().run_line_magic('reload_ext', 'autoreload')
get_ipython().run_line_magic('autoreload', '2')
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spyder-ide/spyder-kernels | spyder_kernels/console/kernel.py | SpyderKernel._load_wurlitzer | def _load_wurlitzer(self):
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# Wurlitzer has no effect on Windows
if not os.name == 'nt':
from IPython.core.getipython import get_ipython
# Enclose this in a try/except because if it fails the
# console will be totally unusable.
... | python | def _load_wurlitzer(self):
"""Load wurlitzer extension."""
# Wurlitzer has no effect on Windows
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# Enclose this in a try/except because if it fails the
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spyder-ide/spyder-kernels | spyder_kernels/console/start.py | import_spydercustomize | def import_spydercustomize():
"""Import our customizations into the kernel."""
here = osp.dirname(__file__)
parent = osp.dirname(here)
customize_dir = osp.join(parent, 'customize')
# Remove current directory from sys.path to prevent kernel
# crashes when people name Python files or modules with... | python | def import_spydercustomize():
"""Import our customizations into the kernel."""
here = osp.dirname(__file__)
parent = osp.dirname(here)
customize_dir = osp.join(parent, 'customize')
# Remove current directory from sys.path to prevent kernel
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spyder-ide/spyder-kernels | spyder_kernels/console/start.py | kernel_config | def kernel_config():
"""Create a config object with IPython kernel options."""
import ipykernel
from IPython.core.application import get_ipython_dir
from traitlets.config.loader import Config, load_pyconfig_files
# ---- IPython config ----
try:
profile_path = osp.join(get_ipython_dir(),... | python | def kernel_config():
"""Create a config object with IPython kernel options."""
import ipykernel
from IPython.core.application import get_ipython_dir
from traitlets.config.loader import Config, load_pyconfig_files
# ---- IPython config ----
try:
profile_path = osp.join(get_ipython_dir(),... | [
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spyder-ide/spyder-kernels | spyder_kernels/console/start.py | varexp | def varexp(line):
"""
Spyder's variable explorer magic
Used to generate plots, histograms and images of the variables displayed
on it.
"""
ip = get_ipython() #analysis:ignore
funcname, name = line.split()
try:
import guiqwt.pyplot as pyplot
except:
import matpl... | python | def varexp(line):
"""
Spyder's variable explorer magic
Used to generate plots, histograms and images of the variables displayed
on it.
"""
ip = get_ipython() #analysis:ignore
funcname, name = line.split()
try:
import guiqwt.pyplot as pyplot
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spyder-ide/spyder-kernels | spyder_kernels/utils/misc.py | fix_reference_name | def fix_reference_name(name, blacklist=None):
"""Return a syntax-valid Python reference name from an arbitrary name"""
name = "".join(re.split(r'[^0-9a-zA-Z_]', name))
while name and not re.match(r'([a-zA-Z]+[0-9a-zA-Z_]*)$', name):
if not re.match(r'[a-zA-Z]', name[0]):
name = name[1:]
... | python | def fix_reference_name(name, blacklist=None):
"""Return a syntax-valid Python reference name from an arbitrary name"""
name = "".join(re.split(r'[^0-9a-zA-Z_]', name))
while name and not re.match(r'([a-zA-Z]+[0-9a-zA-Z_]*)$', name):
if not re.match(r'[a-zA-Z]', name[0]):
name = name[1:]
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | user_return | def user_return(self, frame, return_value):
"""This function is called when a return trap is set here."""
# This is useful when debugging in an active interpreter (otherwise,
# the debugger will stop before reaching the target file)
if self._wait_for_mainpyfile:
if (self.mainpyfile != self.canon... | python | def user_return(self, frame, return_value):
"""This function is called when a return trap is set here."""
# This is useful when debugging in an active interpreter (otherwise,
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if self._wait_for_mainpyfile:
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | post_mortem_excepthook | def post_mortem_excepthook(type, value, tb):
"""
For post mortem exception handling, print a banner and enable post
mortem debugging.
"""
clear_post_mortem()
ipython_shell = get_ipython()
ipython_shell.showtraceback((type, value, tb))
p = pdb.Pdb(ipython_shell.colors)
if not type ==... | python | def post_mortem_excepthook(type, value, tb):
"""
For post mortem exception handling, print a banner and enable post
mortem debugging.
"""
clear_post_mortem()
ipython_shell = get_ipython()
ipython_shell.showtraceback((type, value, tb))
p = pdb.Pdb(ipython_shell.colors)
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | set_post_mortem | def set_post_mortem():
"""
Enable the post mortem debugging excepthook.
"""
def ipython_post_mortem_debug(shell, etype, evalue, tb,
tb_offset=None):
post_mortem_excepthook(etype, evalue, tb)
ipython_shell = get_ipython()
ipython_shell.set_custom_exc((Exception,), ipython_p... | python | def set_post_mortem():
"""
Enable the post mortem debugging excepthook.
"""
def ipython_post_mortem_debug(shell, etype, evalue, tb,
tb_offset=None):
post_mortem_excepthook(etype, evalue, tb)
ipython_shell = get_ipython()
ipython_shell.set_custom_exc((Exception,), ipython_p... | [
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | runfile | def runfile(filename, args=None, wdir=None, namespace=None, post_mortem=False):
"""
Run filename
args: command line arguments (string)
wdir: working directory
post_mortem: boolean, whether to enter post-mortem mode on error
"""
try:
filename = filename.decode('utf-8')
except (Uni... | python | def runfile(filename, args=None, wdir=None, namespace=None, post_mortem=False):
"""
Run filename
args: command line arguments (string)
wdir: working directory
post_mortem: boolean, whether to enter post-mortem mode on error
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try:
filename = filename.decode('utf-8')
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | runcell | def runcell(cellname, filename):
"""
Run a code cell from an editor as a file.
Currently looks for code in an `ipython` property called `cell_code`.
This property must be set by the editor prior to calling this function.
This function deletes the contents of `cell_code` upon completion.
Parame... | python | def runcell(cellname, filename):
"""
Run a code cell from an editor as a file.
Currently looks for code in an `ipython` property called `cell_code`.
This property must be set by the editor prior to calling this function.
This function deletes the contents of `cell_code` upon completion.
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | debugfile | def debugfile(filename, args=None, wdir=None, post_mortem=False):
"""
Debug filename
args: command line arguments (string)
wdir: working directory
post_mortem: boolean, included for compatiblity with runfile
"""
debugger = pdb.Pdb()
filename = debugger.canonic(filename)
debugger._wai... | python | def debugfile(filename, args=None, wdir=None, post_mortem=False):
"""
Debug filename
args: command line arguments (string)
wdir: working directory
post_mortem: boolean, included for compatiblity with runfile
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debugger = pdb.Pdb()
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | UserModuleReloader.create_pathlist | def create_pathlist(self, initial_pathlist):
"""
Add to pathlist Python library paths to be skipped from module
reloading.
"""
# Get standard installation paths
try:
paths = sysconfig.get_paths()
standard_paths = [paths['stdlib'],
... | python | def create_pathlist(self, initial_pathlist):
"""
Add to pathlist Python library paths to be skipped from module
reloading.
"""
# Get standard installation paths
try:
paths = sysconfig.get_paths()
standard_paths = [paths['stdlib'],
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spyder-ide/spyder-kernels | spyder_kernels/customize/spydercustomize.py | UserModuleReloader.is_module_reloadable | def is_module_reloadable(self, module, modname):
"""Decide if a module is reloadable or not."""
if self.has_cython:
# Don't return cached inline compiled .PYX files
return False
else:
if (self.is_module_in_pathlist(module) or
self.is_module... | python | def is_module_reloadable(self, module, modname):
"""Decide if a module is reloadable or not."""
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# Don't return cached inline compiled .PYX files
return False
else:
if (self.is_module_in_pathlist(module) or
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spyder-ide/spyder-kernels | spyder_kernels/utils/iofuncs.py | load_pickle | def load_pickle(filename):
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spyder-ide/spyder-kernels | spyder_kernels/utils/dochelpers.py | getsource | def getsource(obj):
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] | train | https://github.com/spyder-ide/spyder-kernels/blob/2c5b36cdb797b8aba77bc406ca96f5e079c4aaca/spyder_kernels/utils/dochelpers.py#L231-L267 |
spyder-ide/spyder-kernels | spyder_kernels/utils/dochelpers.py | getargtxt | def getargtxt(obj, one_arg_per_line=True):
"""
Get the names and default values of a function's arguments
Return list with separators (', ') formatted for calltips
"""
args = getargs(obj)
if args:
sep = ', '
textlist = None
for i_arg, arg in enumerate(args):
i... | python | def getargtxt(obj, one_arg_per_line=True):
"""
Get the names and default values of a function's arguments
Return list with separators (', ') formatted for calltips
"""
args = getargs(obj)
if args:
sep = ', '
textlist = None
for i_arg, arg in enumerate(args):
i... | [
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spyder-ide/spyder-kernels | spyder_kernels/utils/dochelpers.py | isdefined | def isdefined(obj, force_import=False, namespace=None):
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if namespace is None:
namespace = locals()
attr_list = obj.split('.')
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if len(base) == 0:
return False
... | python | def isdefined(obj, force_import=False, namespace=None):
"""Return True if object is defined in namespace
If namespace is None --> namespace = locals()"""
if namespace is None:
namespace = locals()
attr_list = obj.split('.')
base = attr_list.pop(0)
if len(base) == 0:
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swift-nav/libsbp | python/sbp/client/drivers/file_driver.py | FileDriver.read | def read(self, size):
"""
Read wrapper.
Parameters
----------
size : int
Number of bytes to read.
"""
return_val = self.handle.read(size)
if not return_val:
raise IOError
else:
return return_val | python | def read(self, size):
"""
Read wrapper.
Parameters
----------
size : int
Number of bytes to read.
"""
return_val = self.handle.read(size)
if not return_val:
raise IOError
else:
return return_val | [
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size : int
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swift-nav/libsbp | generator/sbpg/targets/latex.py | escape_tex | def escape_tex(value):
"""
Make text tex safe
"""
newval = value
for pattern, replacement in LATEX_SUBS:
newval = pattern.sub(replacement, newval)
return newval | python | def escape_tex(value):
"""
Make text tex safe
"""
newval = value
for pattern, replacement in LATEX_SUBS:
newval = pattern.sub(replacement, newval)
return newval | [
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swift-nav/libsbp | generator/sbpg/targets/latex.py | classnameify | def classnameify(s):
"""
Makes a classname
"""
return ''.join(w if w in ACRONYMS else w.title() for w in s.split('_')) | python | def classnameify(s):
"""
Makes a classname
"""
return ''.join(w if w in ACRONYMS else w.title() for w in s.split('_')) | [
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swift-nav/libsbp | generator/sbpg/targets/latex.py | packagenameify | def packagenameify(s):
"""
Makes a package name
"""
return ''.join(w if w in ACRONYMS else w.title() for w in s.split('.')[-1:]) | python | def packagenameify(s):
"""
Makes a package name
"""
return ''.join(w if w in ACRONYMS else w.title() for w in s.split('.')[-1:]) | [
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swift-nav/libsbp | generator/sbpg/targets/latex.py | handle_fields | def handle_fields(definitions, fields, prefix, offset, multiplier):
"""
Helper for handling naming and sizing of fields. It's terrible.
"""
items = []
for f in fields:
if f.type_id == "array" and f.options['fill'].value in CONSTRUCT_CODE:
prefix_name = '.'.join([prefix, f.identifier]) if prefix else... | python | def handle_fields(definitions, fields, prefix, offset, multiplier):
"""
Helper for handling naming and sizing of fields. It's terrible.
"""
items = []
for f in fields:
if f.type_id == "array" and f.options['fill'].value in CONSTRUCT_CODE:
prefix_name = '.'.join([prefix, f.identifier]) if prefix else... | [
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