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dnanexus/dx-toolkit | src/python/dxpy/app_builder.py | get_enabled_regions | def get_enabled_regions(app_spec, from_command_line):
"""Returns a list of the regions in which the app should be enabled.
Also validates that app_spec['regionalOptions'], if supplied, is
well-formed.
:param app_spec: app specification
:type app_spec: dict
:param from_command_line: The regions... | python | def get_enabled_regions(app_spec, from_command_line):
"""Returns a list of the regions in which the app should be enabled.
Also validates that app_spec['regionalOptions'], if supplied, is
well-formed.
:param app_spec: app specification
:type app_spec: dict
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | exit_with_error | def exit_with_error(msg):
'''
:param msg: string message to print before exiting
Print the error message, as well as a blurb on where to find the
job workspaces
'''
msg += '\n'
msg += 'Local job workspaces can be found in: ' + str(environ.get('DX_TEST_JOB_HOMEDIRS'))
sys.exit(msg) | python | def exit_with_error(msg):
'''
:param msg: string message to print before exiting
Print the error message, as well as a blurb on where to find the
job workspaces
'''
msg += '\n'
msg += 'Local job workspaces can be found in: ' + str(environ.get('DX_TEST_JOB_HOMEDIRS'))
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | has_local_job_refs | def has_local_job_refs(io_hash):
'''
:param io_hash: input/output hash
:type io_hash: dict
:returns: boolean indicating whether any job-based object references are found in *io_hash*
'''
q = []
for field in io_hash:
if is_job_ref(io_hash[field]):
if get_job_from_jbor(io_... | python | def has_local_job_refs(io_hash):
'''
:param io_hash: input/output hash
:type io_hash: dict
:returns: boolean indicating whether any job-based object references are found in *io_hash*
'''
q = []
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | resolve_job_ref | def resolve_job_ref(jbor, job_outputs={}, should_resolve=True):
'''
:param jbor: a dict that is a valid job-based object reference
:type jbor: dict
:param job_outputs: a dict of finished local jobs to their output hashes
:type job_outputs: :class:`collections.OrderedDict`
:returns: the reference... | python | def resolve_job_ref(jbor, job_outputs={}, should_resolve=True):
'''
:param jbor: a dict that is a valid job-based object reference
:type jbor: dict
:param job_outputs: a dict of finished local jobs to their output hashes
:type job_outputs: :class:`collections.OrderedDict`
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | resolve_job_references | def resolve_job_references(io_hash, job_outputs, should_resolve=True):
'''
:param io_hash: an input or output hash in which to resolve any job-based object references possible
:type io_hash: dict
:param job_outputs: a mapping of finished local jobs to their output hashes
:type job_outputs: dict
... | python | def resolve_job_references(io_hash, job_outputs, should_resolve=True):
'''
:param io_hash: an input or output hash in which to resolve any job-based object references possible
:type io_hash: dict
:param job_outputs: a mapping of finished local jobs to their output hashes
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | get_implicit_depends_on | def get_implicit_depends_on(input_hash, depends_on):
'''
Add DNAnexus links to non-closed data objects in input_hash to depends_on
'''
q = []
for field in input_hash:
possible_dep = get_nonclosed_data_obj_link(input_hash[field])
if possible_dep is not None:
depends_on.ap... | python | def get_implicit_depends_on(input_hash, depends_on):
'''
Add DNAnexus links to non-closed data objects in input_hash to depends_on
'''
q = []
for field in input_hash:
possible_dep = get_nonclosed_data_obj_link(input_hash[field])
if possible_dep is not None:
depends_on.ap... | [
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | queue_entry_point | def queue_entry_point(function, input_hash, depends_on=[], name=None):
'''
:param function: function to run
:param input_hash: input to new job
:param depends_on: list of data object IDs and/or job IDs (local or remote) to wait for before the job can be run
:type depends_on: list of strings
:par... | python | def queue_entry_point(function, input_hash, depends_on=[], name=None):
'''
:param function: function to run
:param input_hash: input to new job
:param depends_on: list of data object IDs and/or job IDs (local or remote) to wait for before the job can be run
:type depends_on: list of strings
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | run_one_entry_point | def run_one_entry_point(job_id, function, input_hash, run_spec, depends_on, name=None):
'''
:param job_id: job ID of the local job to run
:type job_id: string
:param function: function to run
:type function: string
:param input_hash: input for the job (may include job-based object references)
... | python | def run_one_entry_point(job_id, function, input_hash, run_spec, depends_on, name=None):
'''
:param job_id: job ID of the local job to run
:type job_id: string
:param function: function to run
:type function: string
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dnanexus/dx-toolkit | src/python/dxpy/utils/local_exec_utils.py | run_entry_points | def run_entry_points(run_spec):
'''
:param run_spec: run specification from the dxapp.json of the app
:type run_spec: dict
Runs all job entry points found in
$DX_TEST_JOB_HOMEDIRS/job_queue.json in a first-in, first-out
manner until it is an empty array (or an error occurs).
'''
job_que... | python | def run_entry_points(run_spec):
'''
:param run_spec: run specification from the dxapp.json of the app
:type run_spec: dict
Runs all job entry points found in
$DX_TEST_JOB_HOMEDIRS/job_queue.json in a first-in, first-out
manner until it is an empty array (or an error occurs).
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dnanexus/dx-toolkit | src/python/dxpy/api.py | analysis_add_tags | def analysis_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/add... | python | def analysis_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/add... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | analysis_describe | def analysis_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/d... | python | def analysis_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2Fdescribe
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dnanexus/dx-toolkit | src/python/dxpy/api.py | analysis_remove_tags | def analysis_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FremoveTags
"""
return DXHTTPRequest... | python | def analysis_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FremoveTags
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | analysis_set_properties | def analysis_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FsetProperties
"""
return DXHT... | python | def analysis_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2FsetProperties
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dnanexus/dx-toolkit | src/python/dxpy/api.py | analysis_terminate | def analysis_terminate(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/terminate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2Fterminate
"""
return DXHTTPRequest('/%... | python | def analysis_terminate(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /analysis-xxxx/terminate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fanalysis-xxxx%2Fterminate
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dnanexus/dx-toolkit | src/python/dxpy/api.py | app_add_developers | def app_add_developers(app_name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /app-xxxx/addDevelopers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Apps#API-method:-/app-xxxx%5B/yyyy%5D/addDevelopers
"""
fully_qualified_versio... | python | def app_add_developers(app_name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /app-xxxx/addDevelopers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Apps#API-method:-/app-xxxx%5B/yyyy%5D/addDevelopers
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dnanexus/dx-toolkit | src/python/dxpy/api.py | app_run | def app_run(app_name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /app-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Apps#API-method:-/app-xxxx%5B/yyyy%5D/run
"""
input_params_cp = Nonce.update_nonce(input_params)
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"""
Invokes the /app-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Apps#API-method:-/app-xxxx%5B/yyyy%5D/run
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_add_tags | def applet_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, input_... | python | def applet_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_describe | def applet_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/descr... | python | def applet_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Fdescribe
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_get | def applet_get(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/get API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Fget
"""
return DXHTTPRequest('/%s/get' % object_id, in... | python | def applet_get(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/get API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Fget
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_get_details | def applet_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
"""
return DXHTTPRequest('/%s/getDet... | python | def applet_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_list_projects | def applet_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
return DXHTTPRequest('/%s/listProjec... | python | def applet_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_remove_tags | def applet_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % objec... | python | def applet_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % objec... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_rename | def applet_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_param... | python | def applet_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_validate_batch | def applet_validate_batch(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/validateBatch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2FvalidateBatch
"""
return DXHTTPRe... | python | def applet_validate_batch(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/validateBatch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2FvalidateBatch
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_run | def applet_run(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Frun
"""
input_params_cp = Nonce.update_nonce(input_par... | python | def applet_run(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fapplet-xxxx%2Frun
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dnanexus/dx-toolkit | src/python/dxpy/api.py | applet_set_properties | def applet_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/setP... | python | def applet_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /applet-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_clone | def container_clone(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/clone API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2Fclone
"""
return DXHTTPRequest('/%s/clone' % object_id, input... | python | def container_clone(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/clone API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2Fclone
"""
return DXHTTPRequest('/%s/clone' % object_id, input... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_describe | def container_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Containers-for-Execution#API-method%3A-%2Fcontainer-xxxx%2Fdescribe
"""
return DXHTTPRequest('... | python | def container_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Containers-for-Execution#API-method%3A-%2Fcontainer-xxxx%2Fdescribe
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_destroy | def container_destroy(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/destroy API method.
"""
return DXHTTPRequest('/%s/destroy' % object_id, input_params, always_retry=always_retry, **kwargs) | python | def container_destroy(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/destroy API method.
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_list_folder | def container_list_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FlistFolder
"""
return DXHTTPRequest('/... | python | def container_list_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FlistFolder
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_move | def container_move(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/move API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2Fmove
"""
return DXHTTPRequest('/%s/move' % object_... | python | def container_move(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/move API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2Fmove
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_new_folder | def container_new_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/newFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FnewFolder
"""
return DXHTTPRequest('/%s/... | python | def container_new_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /container-xxxx/newFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FnewFolder
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_remove_folder | def container_remove_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/removeFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveFolder
"""
return DXHTTPReq... | python | def container_remove_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/removeFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveFolder
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_remove_objects | def container_remove_objects(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/removeObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveObjects
"""
return DXHTTP... | python | def container_remove_objects(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/removeObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveObjects
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | container_rename_folder | def container_rename_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/renameFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder
"""
return DXHTTPReq... | python | def container_rename_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /container-xxxx/renameFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_add_tags | def database_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, in... | python | def database_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, in... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_add_types | def database_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
"""
return DXHTTPRequest('/%s/addTypes' % object_i... | python | def database_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_close | def database_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose
"""
return DXHTTPRequest('/%s/close' % objec... | python | def database_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_describe | def database_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % ob... | python | def database_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2Fdescribe
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_get_details | def database_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
"""
return DXHTTPRequest('/%s/ge... | python | def database_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_list_projects | def database_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
return DXHTTPRequest('/%s/listPr... | python | def database_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_relocate | def database_relocate(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /database-xxxx/relocate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2Frelocate
"""
return DXHTTPRequest('/%s/relocate' % o... | python | def database_relocate(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /database-xxxx/relocate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2Frelocate
"""
return DXHTTPRequest('/%s/relocate' % o... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_remove_tags | def database_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % o... | python | def database_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_remove_types | def database_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
return DXHTTPRequest('/%s/removeTypes... | python | def database_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_rename | def database_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_p... | python | def database_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_p... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_set_details | def database_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
"""
return DXHTTPRequest('/%s/se... | python | def database_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_set_properties | def database_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/... | python | def database_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_set_visibility | def database_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
"""
return DXHTTPRequest('/%s/... | python | def database_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | database_list_folder | def database_list_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2FlistFolder
"""
return DXHTTPRequest('/%s/listFol... | python | def database_list_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /database-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Databases#API-method%3A-%2Fdatabase-xxxx%2FlistFolder
"""
return DXHTTPRequest('/%s/listFol... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_add_tags | def file_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, input_para... | python | def file_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, input_para... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_add_types | def file_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
"""
return DXHTTPRequest('/%s/addTypes' % object_id, input... | python | def file_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_close | def file_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fclose
"""
return DXHTTPRequest('/%s/close' % object_id, input_params, alway... | python | def file_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fclose
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_describe | def file_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object_id, input_p... | python | def file_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fdescribe
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_download | def file_download(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/download API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fdownload
"""
return DXHTTPRequest('/%s/download' % object_id, input_p... | python | def file_download(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/download API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fdownload
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_get_details | def file_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
"""
return DXHTTPRequest('/%s/getDetails... | python | def file_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_list_projects | def file_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
return DXHTTPRequest('/%s/listProjects' ... | python | def file_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_remove_tags | def file_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % object_id... | python | def file_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_remove_types | def file_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
return DXHTTPRequest('/%s/removeTypes' % obje... | python | def file_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_rename | def file_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_params, a... | python | def file_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_params, a... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_set_details | def file_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
"""
return DXHTTPRequest('/%s/setDetails... | python | def file_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_set_properties | def file_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/setPrope... | python | def file_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_set_visibility | def file_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
"""
return DXHTTPRequest('/%s/setVisib... | python | def file_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_upload | def file_upload(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/upload API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fupload
"""
return DXHTTPRequest('/%s/upload' % object_id, input_params, a... | python | def file_upload(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file-xxxx/upload API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile-xxxx%2Fupload
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | file_new | def file_new(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file/new API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile%2Fnew
"""
input_params_cp = Nonce.update_nonce(input_params)
return DXHTTPRequest('/file/new', inp... | python | def file_new(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /file/new API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Files#API-method%3A-%2Ffile%2Fnew
"""
input_params_cp = Nonce.update_nonce(input_params)
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dnanexus/dx-toolkit | src/python/dxpy/api.py | global_workflow_add_authorized_users | def global_workflow_add_authorized_users(name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /globalworkflow-xxxx/addAuthorizedUsers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Global-Workflows#API-method:-/globalworkflow-xxxx%5B/yyy... | python | def global_workflow_add_authorized_users(name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /globalworkflow-xxxx/addAuthorizedUsers API method.
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dnanexus/dx-toolkit | src/python/dxpy/api.py | global_workflow_run | def global_workflow_run(name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /globalworkflow-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Global-Workflows#API-method:-/globalworkflow-xxxx%5B/yyyy%5D/run
"""
input_param... | python | def global_workflow_run(name_or_id, alias=None, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /globalworkflow-xxxx/run API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Global-Workflows#API-method:-/globalworkflow-xxxx%5B/yyyy%5D/run
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dnanexus/dx-toolkit | src/python/dxpy/api.py | job_add_tags | def job_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % objec... | python | def job_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FaddTags
"""
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"""
Invokes the /job-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2Fdescribe
"""
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"""
Invokes the /job-xxxx/describe API method.
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dnanexus/dx-toolkit | src/python/dxpy/api.py | job_get_log | def job_get_log(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /job-xxxx/getLog API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FgetLog
"""
return DXHTTPRequest('/%s/getLog' % object_i... | python | def job_get_log(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /job-xxxx/getLog API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FgetLog
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | job_remove_tags | def job_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeT... | python | def job_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FremoveTags
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | job_set_properties | def job_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%... | python | def job_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2FsetProperties
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | job_terminate | def job_terminate(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/terminate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2Fterminate
"""
return DXHTTPRequest('/%s/terminate' ... | python | def job_terminate(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /job-xxxx/terminate API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Applets-and-Entry-Points#API-method%3A-%2Fjob-xxxx%2Fterminate
"""
return DXHTTPRequest('/%s/terminate' ... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | notifications_get | def notifications_get(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /notifications/get API method.
"""
return DXHTTPRequest('/notifications/get', input_params, always_retry=always_retry, **kwargs) | python | def notifications_get(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /notifications/get API method.
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | notifications_mark_read | def notifications_mark_read(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /notifications/markRead API method.
"""
return DXHTTPRequest('/notifications/markRead', input_params, always_retry=always_retry, **kwargs) | python | def notifications_mark_read(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /notifications/markRead API method.
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_describe | def org_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object_id, in... | python | def org_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Fdescribe
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_find_members | def org_find_members(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/findMembers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindMembers
"""
return DXHTTPRequest('/%s/findMembers' % ... | python | def org_find_members(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/findMembers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindMembers
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_find_projects | def org_find_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/findProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindProjects
"""
return DXHTTPRequest('/%s/findProjects... | python | def org_find_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/findProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindProjects
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_find_apps | def org_find_apps(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/findApps API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindApps
"""
return DXHTTPRequest('/%s/findApps' % object_id, i... | python | def org_find_apps(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/findApps API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FfindApps
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_invite | def org_invite(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/invite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Finvite
"""
return DXHTTPRequest('/%s/invite' % object_id, input_para... | python | def org_invite(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/invite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Finvite
"""
return DXHTTPRequest('/%s/invite' % object_id, input_para... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_remove_member | def org_remove_member(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/removeMember API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FremoveMember
"""
return DXHTTPRequest('/%s/removeMember... | python | def org_remove_member(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/removeMember API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FremoveMember
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_set_member_access | def org_set_member_access(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/setMemberAccess API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FsetMemberAccess
"""
return DXHTTPRequest('/%s/se... | python | def org_set_member_access(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/setMemberAccess API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2FsetMemberAccess
"""
return DXHTTPRequest('/%s/se... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | org_update | def org_update(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update' % object_id, input_para... | python | def org_update(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /org-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Organizations#API-method%3A-%2Forg-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update' % object_id, input_para... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_add_tags | def project_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id... | python | def project_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_clone | def project_clone(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/clone API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2Fclone
"""
return DXHTTPRequest('/%s/clone' % object_id, input_par... | python | def project_clone(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/clone API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2Fclone
"""
return DXHTTPRequest('/%s/clone' % object_id, input_par... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_decrease_permissions | def project_decrease_permissions(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/decreasePermissions API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2FdecreasePermissions... | python | def project_decrease_permissions(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/decreasePermissions API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2FdecreasePermissions... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_describe | def project_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object... | python | def project_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_destroy | def project_destroy(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/destroy API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fdestroy
"""
return DXHTTPRequest('/%s/destroy' % object_id,... | python | def project_destroy(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/destroy API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fdestroy
"""
return DXHTTPRequest('/%s/destroy' % object_id,... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_invite | def project_invite(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/invite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Finvite
"""
return DXHTTPRequest('/%s/... | python | def project_invite(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/invite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Finvite
"""
return DXHTTPRequest('/%s/... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_leave | def project_leave(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/leave API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Fleave
"""
return DXHTTPRequest('/%s/leav... | python | def project_leave(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/leave API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Fleave
"""
return DXHTTPRequest('/%s/leav... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_list_folder | def project_list_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FlistFolder
"""
return DXHTTPRequest('/%s/l... | python | def project_list_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/listFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FlistFolder
"""
return DXHTTPRequest('/%s/l... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_move | def project_move(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/move API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2Fmove
"""
return DXHTTPRequest('/%s/move' % object_id, ... | python | def project_move(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/move API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2Fmove
"""
return DXHTTPRequest('/%s/move' % object_id, ... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_new_folder | def project_new_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/newFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FnewFolder
"""
return DXHTTPRequest('/%s/newF... | python | def project_new_folder(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/newFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FnewFolder
"""
return DXHTTPRequest('/%s/newF... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_remove_folder | def project_remove_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/removeFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveFolder
"""
return DXHTTPRequest... | python | def project_remove_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/removeFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveFolder
"""
return DXHTTPRequest... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_remove_objects | def project_remove_objects(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/removeObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveObjects
"""
return DXHTTPRequ... | python | def project_remove_objects(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/removeObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FremoveObjects
"""
return DXHTTPRequ... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_remove_tags | def project_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags'... | python | def project_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags'... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_rename_folder | def project_rename_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/renameFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder
"""
return DXHTTPRequest... | python | def project_rename_folder(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project-xxxx/renameFolder API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder
"""
return DXHTTPRequest... | [
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For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Folders-and-Deletion#API-method%3A-%2Fclass-xxxx%2FrenameFolder | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_set_properties | def project_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/se... | python | def project_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/se... | [
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For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FsetProperties | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_transfer | def project_transfer(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/transfer API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Ftransfer
"""
return DXHTTPRequest(... | python | def project_transfer(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/transfer API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Ftransfer
"""
return DXHTTPRequest(... | [
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"%",
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For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Project-Permissions-and-Sharing#API-method%3A-%2Fproject-xxxx%2Ftransfer | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_update | def project_update(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update' % object_id, inp... | python | def project_update(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update' % object_id, inp... | [
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For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2Fupdate | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_update_sponsorship | def project_update_sponsorship(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/updateSponsorship API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FupdateSponsorship
"""
return DXHTTPReq... | python | def project_update_sponsorship(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /project-xxxx/updateSponsorship API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FupdateSponsorship
"""
return DXHTTPReq... | [
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For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject-xxxx%2FupdateSponsorship | [
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