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sibirrer/lenstronomy
lenstronomy/LensModel/Profiles/numerical_deflections.py
NumericalAlpha.hessian
def hessian(self, x, y, center_x = 0, center_y = 0, **kwargs): """ returns Hessian matrix of function d^2f/dx^2, d^f/dy^2, d^2/dxdy (un-normalized!!!) interpolated from the numerical deflection table """ diff = 1e-6 alpha_ra, alpha_dec = self.derivatives(x, y, center_x =...
python
def hessian(self, x, y, center_x = 0, center_y = 0, **kwargs): """ returns Hessian matrix of function d^2f/dx^2, d^f/dy^2, d^2/dxdy (un-normalized!!!) interpolated from the numerical deflection table """ diff = 1e-6 alpha_ra, alpha_dec = self.derivatives(x, y, center_x =...
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returns Hessian matrix of function d^2f/dx^2, d^f/dy^2, d^2/dxdy (un-normalized!!!) interpolated from the numerical deflection table
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Profiles/numerical_deflections.py#L85-L108
sibirrer/lenstronomy
lenstronomy/LensModel/Profiles/sersic_ellipse.py
SersicEllipse.function
def function(self, x, y, n_sersic, R_sersic, k_eff, e1, e2, center_x=0, center_y=0): """ returns Gaussian """ phi_G, q = param_util.ellipticity2phi_q(e1, e2) x_, y_ = self._coord_transf(x, y, q, phi_G, center_x, center_y) f_ = self.sersic.function(x_, y_, n_sersic, R_sers...
python
def function(self, x, y, n_sersic, R_sersic, k_eff, e1, e2, center_x=0, center_y=0): """ returns Gaussian """ phi_G, q = param_util.ellipticity2phi_q(e1, e2) x_, y_ = self._coord_transf(x, y, q, phi_G, center_x, center_y) f_ = self.sersic.function(x_, y_, n_sersic, R_sers...
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returns Gaussian
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/Profiles/sersic_ellipse.py
SersicEllipse.derivatives
def derivatives(self, x, y, n_sersic, R_sersic, k_eff, e1, e2, center_x=0, center_y=0): """ returns df/dx and df/dy of the function """ phi_G, q = param_util.ellipticity2phi_q(e1, e2) e = abs(1. - q) cos_phi = np.cos(phi_G) sin_phi = np.sin(phi_G) x_, y_ =...
python
def derivatives(self, x, y, n_sersic, R_sersic, k_eff, e1, e2, center_x=0, center_y=0): """ returns df/dx and df/dy of the function """ phi_G, q = param_util.ellipticity2phi_q(e1, e2) e = abs(1. - q) cos_phi = np.cos(phi_G) sin_phi = np.sin(phi_G) x_, y_ =...
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returns df/dx and df/dy of the function
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
add_layer2image
def add_layer2image(grid2d, x_pos, y_pos, kernel, order=1): """ adds a kernel on the grid2d image at position x_pos, y_pos with an interpolated subgrid pixel shift of order=order :param grid2d: 2d pixel grid (i.e. image) :param x_pos: x-position center (pixel coordinate) of the layer to be added :pa...
python
def add_layer2image(grid2d, x_pos, y_pos, kernel, order=1): """ adds a kernel on the grid2d image at position x_pos, y_pos with an interpolated subgrid pixel shift of order=order :param grid2d: 2d pixel grid (i.e. image) :param x_pos: x-position center (pixel coordinate) of the layer to be added :pa...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
add_layer2image_int
def add_layer2image_int(grid2d, x_pos, y_pos, kernel): """ adds a kernel on the grid2d image at position x_pos, y_pos at integer positions of pixel :param grid2d: 2d pixel grid (i.e. image) :param x_pos: x-position center (pixel coordinate) of the layer to be added :param y_pos: y-position center (p...
python
def add_layer2image_int(grid2d, x_pos, y_pos, kernel): """ adds a kernel on the grid2d image at position x_pos, y_pos at integer positions of pixel :param grid2d: 2d pixel grid (i.e. image) :param x_pos: x-position center (pixel coordinate) of the layer to be added :param y_pos: y-position center (p...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
add_background
def add_background(image, sigma_bkd): """ adds background noise to image :param image: pixel values of image :param sigma_bkd: background noise (sigma) :return: a realisation of Gaussian noise of the same size as image """ if sigma_bkd < 0: raise ValueError("Sigma background is small...
python
def add_background(image, sigma_bkd): """ adds background noise to image :param image: pixel values of image :param sigma_bkd: background noise (sigma) :return: a realisation of Gaussian noise of the same size as image """ if sigma_bkd < 0: raise ValueError("Sigma background is small...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
add_poisson
def add_poisson(image, exp_time): """ adds a poison (or Gaussian) distributed noise with mean given by surface brightness :param image: pixel values (photon counts per unit exposure time) :param exp_time: exposure time :return: Poisson noise realization of input image """ """ adds a pois...
python
def add_poisson(image, exp_time): """ adds a poison (or Gaussian) distributed noise with mean given by surface brightness :param image: pixel values (photon counts per unit exposure time) :param exp_time: exposure time :return: Poisson noise realization of input image """ """ adds a pois...
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adds a poison (or Gaussian) distributed noise with mean given by surface brightness :param image: pixel values (photon counts per unit exposure time) :param exp_time: exposure time :return: Poisson noise realization of input image
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
re_size_array
def re_size_array(x_in, y_in, input_values, x_out, y_out): """ resizes 2d array (i.e. image) to new coordinates. So far only works with square output aligned with coordinate axis. :param x_in: :param y_in: :param input_values: :param x_out: :param y_out: :return: """ interp_2d = ...
python
def re_size_array(x_in, y_in, input_values, x_out, y_out): """ resizes 2d array (i.e. image) to new coordinates. So far only works with square output aligned with coordinate axis. :param x_in: :param y_in: :param input_values: :param x_out: :param y_out: :return: """ interp_2d = ...
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resizes 2d array (i.e. image) to new coordinates. So far only works with square output aligned with coordinate axis. :param x_in: :param y_in: :param input_values: :param x_out: :param y_out: :return:
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
symmetry_average
def symmetry_average(image, symmetry): """ symmetry averaged image :param image: :param symmetry: :return: """ img_sym = np.zeros_like(image) angle = 360./symmetry for i in range(symmetry): img_sym += rotateImage(image, angle*i) img_sym /= symmetry return img_sym
python
def symmetry_average(image, symmetry): """ symmetry averaged image :param image: :param symmetry: :return: """ img_sym = np.zeros_like(image) angle = 360./symmetry for i in range(symmetry): img_sym += rotateImage(image, angle*i) img_sym /= symmetry return img_sym
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
findOverlap
def findOverlap(x_mins, y_mins, min_distance): """ finds overlapping solutions, deletes multiples and deletes non-solutions and if it is not a solution, deleted as well """ n = len(x_mins) idex = [] for i in range(n): if i == 0: pass else: for j in range(0...
python
def findOverlap(x_mins, y_mins, min_distance): """ finds overlapping solutions, deletes multiples and deletes non-solutions and if it is not a solution, deleted as well """ n = len(x_mins) idex = [] for i in range(n): if i == 0: pass else: for j in range(0...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
coordInImage
def coordInImage(x_coord, y_coord, numPix, deltapix): """ checks whether image positions are within the pixel image in units of arcsec if not: remove it :param imcoord: image coordinate (in units of angels) [[x,y,delta,magnification][...]] :type imcoord: (n,4) numpy array :returns: image posit...
python
def coordInImage(x_coord, y_coord, numPix, deltapix): """ checks whether image positions are within the pixel image in units of arcsec if not: remove it :param imcoord: image coordinate (in units of angels) [[x,y,delta,magnification][...]] :type imcoord: (n,4) numpy array :returns: image posit...
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checks whether image positions are within the pixel image in units of arcsec if not: remove it :param imcoord: image coordinate (in units of angels) [[x,y,delta,magnification][...]] :type imcoord: (n,4) numpy array :returns: image positions within the pixel image
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
re_size
def re_size(image, factor=1): """ resizes image with nx x ny to nx/factor x ny/factor :param image: 2d image with shape (nx,ny) :param factor: integer >=1 :return: """ if factor < 1: raise ValueError('scaling factor in re-sizing %s < 1' %factor) f = int(factor) nx, ny = np.sh...
python
def re_size(image, factor=1): """ resizes image with nx x ny to nx/factor x ny/factor :param image: 2d image with shape (nx,ny) :param factor: integer >=1 :return: """ if factor < 1: raise ValueError('scaling factor in re-sizing %s < 1' %factor) f = int(factor) nx, ny = np.sh...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
rebin_image
def rebin_image(bin_size, image, wht_map, sigma_bkg, ra_coords, dec_coords, idex_mask): """ rebins pixels, updates cutout image, wht_map, sigma_bkg, coordinates, PSF :param bin_size: number of pixels (per axis) to merge :return: """ numPix = int(len(image)/bin_size) numPix_precut = numPix * ...
python
def rebin_image(bin_size, image, wht_map, sigma_bkg, ra_coords, dec_coords, idex_mask): """ rebins pixels, updates cutout image, wht_map, sigma_bkg, coordinates, PSF :param bin_size: number of pixels (per axis) to merge :return: """ numPix = int(len(image)/bin_size) numPix_precut = numPix * ...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
rebin_coord_transform
def rebin_coord_transform(factor, x_at_radec_0, y_at_radec_0, Mpix2coord, Mcoord2pix): """ adopt coordinate system and transformation between angular and pixel coordinates of a re-binned image :param bin_size: :param ra_0: :param dec_0: :param x_0: :param y_0: :param Matrix: :param M...
python
def rebin_coord_transform(factor, x_at_radec_0, y_at_radec_0, Mpix2coord, Mcoord2pix): """ adopt coordinate system and transformation between angular and pixel coordinates of a re-binned image :param bin_size: :param ra_0: :param dec_0: :param x_0: :param y_0: :param Matrix: :param M...
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train
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
stack_images
def stack_images(image_list, wht_list, sigma_list): """ stacks images and saves new image as a fits file :param image_name_list: list of image_names to be stacked :return: """ image_stacked = np.zeros_like(image_list[0]) wht_stacked = np.zeros_like(image_stacked) sigma_stacked = 0. f...
python
def stack_images(image_list, wht_list, sigma_list): """ stacks images and saves new image as a fits file :param image_name_list: list of image_names to be stacked :return: """ image_stacked = np.zeros_like(image_list[0]) wht_stacked = np.zeros_like(image_stacked) sigma_stacked = 0. f...
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sibirrer/lenstronomy
lenstronomy/Util/image_util.py
cut_edges
def cut_edges(image, numPix): """ cuts out the edges of a 2d image and returns re-sized image to numPix center is well defined for odd pixel sizes. :param image: 2d numpy array :param numPix: square size of cut out image :return: cutout image with size numPix """ nx, ny = image.shape ...
python
def cut_edges(image, numPix): """ cuts out the edges of a 2d image and returns re-sized image to numPix center is well defined for odd pixel sizes. :param image: 2d numpy array :param numPix: square size of cut out image :return: cutout image with size numPix """ nx, ny = image.shape ...
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cuts out the edges of a 2d image and returns re-sized image to numPix center is well defined for odd pixel sizes. :param image: 2d numpy array :param numPix: square size of cut out image :return: cutout image with size numPix
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Util/image_util.py#L267-L291
sibirrer/lenstronomy
lenstronomy/Cosmo/cosmo_solver.py
InvertCosmo._make_interpolation
def _make_interpolation(self): """ creates an interpolation grid in H_0, omega_m and computes quantities in Dd and Ds_Dds :return: """ H0_range = np.linspace(10, 100, 90) omega_m_range = np.linspace(0.05, 1, 95) grid2d = np.dstack(np.meshgrid(H0_range, omega_m_ran...
python
def _make_interpolation(self): """ creates an interpolation grid in H_0, omega_m and computes quantities in Dd and Ds_Dds :return: """ H0_range = np.linspace(10, 100, 90) omega_m_range = np.linspace(0.05, 1, 95) grid2d = np.dstack(np.meshgrid(H0_range, omega_m_ran...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Cosmo/cosmo_solver.py#L66-L85
sibirrer/lenstronomy
lenstronomy/Cosmo/cosmo_solver.py
InvertCosmo.get_cosmo
def get_cosmo(self, Dd, Ds_Dds): """ return the values of H0 and omega_m computed with an interpolation :param Dd: flat :param Ds_Dds: float :return: """ if not hasattr(self, '_f_H0') or not hasattr(self, '_f_omega_m'): self._make_interpolation() ...
python
def get_cosmo(self, Dd, Ds_Dds): """ return the values of H0 and omega_m computed with an interpolation :param Dd: flat :param Ds_Dds: float :return: """ if not hasattr(self, '_f_H0') or not hasattr(self, '_f_omega_m'): self._make_interpolation() ...
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return the values of H0 and omega_m computed with an interpolation :param Dd: flat :param Ds_Dds: float :return:
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/numerical_profile_integrals.py
ProfileIntegrals.mass_enclosed_3d
def mass_enclosed_3d(self, r, kwargs_profile): """ computes the mass enclosed within a sphere of radius r :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 3d mass enclosed of r """ kwargs = copy.deepcopy(kw...
python
def mass_enclosed_3d(self, r, kwargs_profile): """ computes the mass enclosed within a sphere of radius r :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 3d mass enclosed of r """ kwargs = copy.deepcopy(kw...
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computes the mass enclosed within a sphere of radius r :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 3d mass enclosed of r
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/numerical_profile_integrals.py
ProfileIntegrals.density_2d
def density_2d(self, r, kwargs_profile): """ computes the projected density along the line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 2d projected density at projected radius r """ kwargs = c...
python
def density_2d(self, r, kwargs_profile): """ computes the projected density along the line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 2d projected density at projected radius r """ kwargs = c...
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computes the projected density along the line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: 2d projected density at projected radius r
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/numerical_profile_integrals.py
ProfileIntegrals.mass_enclosed_2d
def mass_enclosed_2d(self, r, kwargs_profile): """ computes the mass enclosed the projected line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: projected mass enclosed radius r """ kwargs = copy....
python
def mass_enclosed_2d(self, r, kwargs_profile): """ computes the mass enclosed the projected line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: projected mass enclosed radius r """ kwargs = copy....
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computes the mass enclosed the projected line-of-sight :param r: radius (arcsec) :param kwargs_profile: keyword argument list with lens model parameters :return: projected mass enclosed radius r
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train
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sibirrer/lenstronomy
lenstronomy/Data/imaging_data.py
Data.shift_coordinate_grid
def shift_coordinate_grid(self, x_shift, y_shift, pixel_unit=False): """ shifts the coordinate system :param x_shif: shift in x (or RA) :param y_shift: shift in y (or DEC) :param pixel_unit: bool, if True, units of pixels in input, otherwise RA/DEC :return: updated data c...
python
def shift_coordinate_grid(self, x_shift, y_shift, pixel_unit=False): """ shifts the coordinate system :param x_shif: shift in x (or RA) :param y_shift: shift in y (or DEC) :param pixel_unit: bool, if True, units of pixels in input, otherwise RA/DEC :return: updated data c...
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shifts the coordinate system :param x_shif: shift in x (or RA) :param y_shift: shift in y (or DEC) :param pixel_unit: bool, if True, units of pixels in input, otherwise RA/DEC :return: updated data class with change in coordinate system
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Data/imaging_data.py#L93-L102
sibirrer/lenstronomy
lenstronomy/Data/imaging_data.py
Data.C_D
def C_D(self): """ Covariance matrix of all pixel values in 2d numpy array (only diagonal component) The covariance matrix is estimated from the data. WARNING: For low count statistics, the noise in the data may lead to biased estimates of the covariance matrix. :return: covaria...
python
def C_D(self): """ Covariance matrix of all pixel values in 2d numpy array (only diagonal component) The covariance matrix is estimated from the data. WARNING: For low count statistics, the noise in the data may lead to biased estimates of the covariance matrix. :return: covaria...
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Covariance matrix of all pixel values in 2d numpy array (only diagonal component) The covariance matrix is estimated from the data. WARNING: For low count statistics, the noise in the data may lead to biased estimates of the covariance matrix. :return: covariance matrix of all pixel values in 2...
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train
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sibirrer/lenstronomy
lenstronomy/Data/imaging_data.py
Data.covariance_matrix
def covariance_matrix(self, data, background_rms=1, exposure_map=1, noise_map=None, verbose=False): """ returns a diagonal matrix for the covariance estimation which describes the error Notes: - the exposure map must be positive definite. Values that deviate too much from the mean expo...
python
def covariance_matrix(self, data, background_rms=1, exposure_map=1, noise_map=None, verbose=False): """ returns a diagonal matrix for the covariance estimation which describes the error Notes: - the exposure map must be positive definite. Values that deviate too much from the mean expo...
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/Solver/lens_equation_solver.py
LensEquationSolver.image_position_stochastic
def image_position_stochastic(self, source_x, source_y, kwargs_lens, search_window=10, precision_limit=10**(-10), arrival_time_sort=True, x_center=0, y_center=0, num_random=1000, verbose=False): """ Solves the lens equation stochastical...
python
def image_position_stochastic(self, source_x, source_y, kwargs_lens, search_window=10, precision_limit=10**(-10), arrival_time_sort=True, x_center=0, y_center=0, num_random=1000, verbose=False): """ Solves the lens equation stochastical...
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Solves the lens equation stochastically with the scipy minimization routine on the quadratic distance between the backwards ray-shooted proposed image position and the source position. Credits to Giulia Pagano :param source_x: source position :param source_y: source position :pa...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Solver/lens_equation_solver.py#L22-L55
sibirrer/lenstronomy
lenstronomy/LensModel/Solver/lens_equation_solver.py
LensEquationSolver.image_position_from_source
def image_position_from_source(self, sourcePos_x, sourcePos_y, kwargs_lens, min_distance=0.1, search_window=10, precision_limit=10**(-10), num_iter_max=100, arrival_time_sort=True, initial_guess_cut=True, verbose=False, x_center=0, y_center=0, num_ra...
python
def image_position_from_source(self, sourcePos_x, sourcePos_y, kwargs_lens, min_distance=0.1, search_window=10, precision_limit=10**(-10), num_iter_max=100, arrival_time_sort=True, initial_guess_cut=True, verbose=False, x_center=0, y_center=0, num_ra...
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finds image position source position and lense model :param sourcePos_x: source position in units of angle :param sourcePos_y: source position in units of angle :param kwargs_lens: lens model parameters as keyword arguments :param min_distance: minimum separation to consider for two ima...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Solver/lens_equation_solver.py#L70-L130
sibirrer/lenstronomy
lenstronomy/LensModel/Solver/lens_equation_solver.py
LensEquationSolver.sort_arrival_times
def sort_arrival_times(self, x_mins, y_mins, kwargs_lens): """ sort arrival times (fermat potential) of image positions in increasing order of light travel time :param x_mins: ra position of images :param y_mins: dec position of images :param kwargs_lens: keyword arguments of len...
python
def sort_arrival_times(self, x_mins, y_mins, kwargs_lens): """ sort arrival times (fermat potential) of image positions in increasing order of light travel time :param x_mins: ra position of images :param y_mins: dec position of images :param kwargs_lens: keyword arguments of len...
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sort arrival times (fermat potential) of image positions in increasing order of light travel time :param x_mins: ra position of images :param y_mins: dec position of images :param kwargs_lens: keyword arguments of lens model :return: sorted lists of x_mins and y_mins
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train
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sibirrer/lenstronomy
lenstronomy/PointSource/point_source_param.py
PointSourceParam.check_positive_flux
def check_positive_flux(cls, kwargs_ps): """ check whether inferred linear parameters are positive :param kwargs_ps: :return: bool """ pos_bool = True for kwargs in kwargs_ps: point_amp = kwargs['point_amp'] for amp in point_amp: ...
python
def check_positive_flux(cls, kwargs_ps): """ check whether inferred linear parameters are positive :param kwargs_ps: :return: bool """ pos_bool = True for kwargs in kwargs_ps: point_amp = kwargs['point_amp'] for amp in point_amp: ...
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check whether inferred linear parameters are positive :param kwargs_ps: :return: bool
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source_param.py#L194-L208
sibirrer/lenstronomy
lenstronomy/Workflow/fitting_sequence.py
FittingSequence.best_fit_likelihood
def best_fit_likelihood(self): """ returns the log likelihood of the best fit model of the current state of this class :return: log likelihood, float """ kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps, kwargs_cosmo = self.best_fit(bijective=False) param_class =...
python
def best_fit_likelihood(self): """ returns the log likelihood of the best fit model of the current state of this class :return: log likelihood, float """ kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps, kwargs_cosmo = self.best_fit(bijective=False) param_class =...
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returns the log likelihood of the best fit model of the current state of this class :return: log likelihood, float
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train
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sibirrer/lenstronomy
lenstronomy/Workflow/fitting_sequence.py
FittingSequence.mcmc
def mcmc(self, n_burn, n_run, walkerRatio, sigma_scale=1, threadCount=1, init_samples=None, re_use_samples=True): """ MCMC routine :param n_burn: number of burn in iterations (will not be saved) :param n_run: number of MCMC iterations that are saved :param walkerRatio: ratio of ...
python
def mcmc(self, n_burn, n_run, walkerRatio, sigma_scale=1, threadCount=1, init_samples=None, re_use_samples=True): """ MCMC routine :param n_burn: number of burn in iterations (will not be saved) :param n_run: number of MCMC iterations that are saved :param walkerRatio: ratio of ...
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MCMC routine :param n_burn: number of burn in iterations (will not be saved) :param n_run: number of MCMC iterations that are saved :param walkerRatio: ratio of walkers/number of free parameters :param sigma_scale: scaling of the initial parameter spread relative to the width in the ini...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Workflow/fitting_sequence.py#L129-L167
sibirrer/lenstronomy
lenstronomy/Workflow/fitting_sequence.py
FittingSequence.pso
def pso(self, n_particles, n_iterations, sigma_scale=1, print_key='PSO', threadCount=1): """ Particle Swarm Optimization :param n_particles: number of particles in the Particle Swarm Optimization :param n_iterations: number of iterations in the optimization process :param sigma_...
python
def pso(self, n_particles, n_iterations, sigma_scale=1, print_key='PSO', threadCount=1): """ Particle Swarm Optimization :param n_particles: number of particles in the Particle Swarm Optimization :param n_iterations: number of iterations in the optimization process :param sigma_...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Workflow/fitting_sequence.py#L169-L196
sibirrer/lenstronomy
lenstronomy/Workflow/fitting_sequence.py
FittingSequence.psf_iteration
def psf_iteration(self, num_iter=10, no_break=True, stacking_method='median', block_center_neighbour=0, keep_psf_error_map=True, psf_symmetry=1, psf_iter_factor=1, verbose=True, compute_bands=None): """ iterative PSF reconstruction :param num_iter: number of iterations in the p...
python
def psf_iteration(self, num_iter=10, no_break=True, stacking_method='median', block_center_neighbour=0, keep_psf_error_map=True, psf_symmetry=1, psf_iter_factor=1, verbose=True, compute_bands=None): """ iterative PSF reconstruction :param num_iter: number of iterations in the p...
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iterative PSF reconstruction :param num_iter: number of iterations in the process :param no_break: bool, if False will break the process as soon as one step lead to a wors reconstruction then the previous step :param stacking_method: string, 'median' and 'mean' supported :param block_ce...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Workflow/fitting_sequence.py#L198-L239
sibirrer/lenstronomy
lenstronomy/Workflow/fitting_sequence.py
FittingSequence.align_images
def align_images(self, n_particles=10, n_iterations=10, lowerLimit=-0.2, upperLimit=0.2, threadCount=1, compute_bands=None): """ aligns the coordinate systems of different exposures within a fixed model parameterisation by executing a PSO with relative coordinate shifts as f...
python
def align_images(self, n_particles=10, n_iterations=10, lowerLimit=-0.2, upperLimit=0.2, threadCount=1, compute_bands=None): """ aligns the coordinate systems of different exposures within a fixed model parameterisation by executing a PSO with relative coordinate shifts as f...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Workflow/fitting_sequence.py#L241-L277
sibirrer/lenstronomy
lenstronomy/Workflow/fitting_sequence.py
FittingSequence.update_settings
def update_settings(self, kwargs_model={}, kwargs_constraints={}, kwargs_likelihood={}, lens_add_fixed=[], source_add_fixed=[], lens_light_add_fixed=[], ps_add_fixed=[], cosmo_add_fixed=[], lens_remove_fixed=[], source_remove_fixed=[], lens_light_remove_fixed=[], ps_remove_fixe...
python
def update_settings(self, kwargs_model={}, kwargs_constraints={}, kwargs_likelihood={}, lens_add_fixed=[], source_add_fixed=[], lens_light_add_fixed=[], ps_add_fixed=[], cosmo_add_fixed=[], lens_remove_fixed=[], source_remove_fixed=[], lens_light_remove_fixed=[], ps_remove_fixe...
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updates lenstronomy settings "on the fly" :param kwargs_model: kwargs, specified keyword arguments overwrite the existing ones :param kwargs_constraints: kwargs, specified keyword arguments overwrite the existing ones :param kwargs_likelihood: kwargs, specified keyword arguments overwrite the e...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Workflow/fitting_sequence.py#L279-L307
sibirrer/lenstronomy
lenstronomy/ImSim/de_lens.py
get_param_WLS
def get_param_WLS(A, C_D_inv, d, inv_bool=True): """ returns the parameter values given :param A: response matrix Nd x Ns (Nd = # data points, Ns = # parameters) :param C_D_inv: inverse covariance matrix of the data, Nd x Nd, diagonal form :param d: data array, 1-d Nd :param inv_bool: boolean, w...
python
def get_param_WLS(A, C_D_inv, d, inv_bool=True): """ returns the parameter values given :param A: response matrix Nd x Ns (Nd = # data points, Ns = # parameters) :param C_D_inv: inverse covariance matrix of the data, Nd x Nd, diagonal form :param d: data array, 1-d Nd :param inv_bool: boolean, w...
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returns the parameter values given :param A: response matrix Nd x Ns (Nd = # data points, Ns = # parameters) :param C_D_inv: inverse covariance matrix of the data, Nd x Nd, diagonal form :param d: data array, 1-d Nd :param inv_bool: boolean, wheter returning also the inverse matrix or just solve the lin...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/ImSim/de_lens.py#L7-L38
sibirrer/lenstronomy
lenstronomy/GalKin/anisotropy.py
MamonLokasAnisotropy.K
def K(self, r, R, kwargs): """ equation A16 im Mamon & Lokas :param r: 3d radius :param R: projected 2d radius :return: """ u = r / R if np.min(u) < 1: raise ValueError("3d radius is smaller than projected radius! Does not make sense.") ...
python
def K(self, r, R, kwargs): """ equation A16 im Mamon & Lokas :param r: 3d radius :param R: projected 2d radius :return: """ u = r / R if np.min(u) < 1: raise ValueError("3d radius is smaller than projected radius! Does not make sense.") ...
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equation A16 im Mamon & Lokas :param r: 3d radius :param R: projected 2d radius :return:
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train
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sibirrer/lenstronomy
lenstronomy/GalKin/anisotropy.py
MamonLokasAnisotropy.beta_r
def beta_r(self, r, kwargs): """ returns the anisotorpy parameter at a given radius :param r: :return: """ if self._type == 'const': return self.const_beta(kwargs) elif self._type == 'OsipkovMerritt': return self.ospikov_meritt(r, kwargs) ...
python
def beta_r(self, r, kwargs): """ returns the anisotorpy parameter at a given radius :param r: :return: """ if self._type == 'const': return self.const_beta(kwargs) elif self._type == 'OsipkovMerritt': return self.ospikov_meritt(r, kwargs) ...
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train
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sibirrer/lenstronomy
lenstronomy/GalKin/anisotropy.py
MamonLokasAnisotropy._B
def _B(self, x, a, b): """ incomplete Beta function as described in Mamon&Lokas A13 :param x: :param a: :param b: :return: """ return special.betainc(a, b, x) * special.beta(a, b)
python
def _B(self, x, a, b): """ incomplete Beta function as described in Mamon&Lokas A13 :param x: :param a: :param b: :return: """ return special.betainc(a, b, x) * special.beta(a, b)
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train
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sibirrer/lenstronomy
lenstronomy/GalKin/anisotropy.py
Anisotropy.beta_r
def beta_r(self, r, kwargs): """ returns the anisotorpy parameter at a given radius :param r: :return: """ if self._type == 'const': return self.const_beta(kwargs) elif self._type == 'r_ani': return self.beta_r_ani(r, kwargs) else: ...
python
def beta_r(self, r, kwargs): """ returns the anisotorpy parameter at a given radius :param r: :return: """ if self._type == 'const': return self.const_beta(kwargs) elif self._type == 'r_ani': return self.beta_r_ani(r, kwargs) else: ...
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train
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sibirrer/lenstronomy
lenstronomy/SimulationAPI/data_api.py
DataAPI.data_class
def data_class(self): """ creates a Data() instance of lenstronomy based on knowledge of the observation :return: instance of Data() class """ x_grid, y_grid, ra_at_xy_0, dec_at_xy_0, x_at_radec_0, y_at_radec_0, Mpix2coord, Mcoord2pix = util.make_grid_with_coordtransform( ...
python
def data_class(self): """ creates a Data() instance of lenstronomy based on knowledge of the observation :return: instance of Data() class """ x_grid, y_grid, ra_at_xy_0, dec_at_xy_0, x_at_radec_0, y_at_radec_0, Mpix2coord, Mcoord2pix = util.make_grid_with_coordtransform( ...
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creates a Data() instance of lenstronomy based on knowledge of the observation :return: instance of Data() class
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train
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sibirrer/lenstronomy
lenstronomy/SimulationAPI/data_api.py
DataAPI.psf_class
def psf_class(self): """ creates instance of PSF() class based on knowledge of the observations For the full possibility of how to create such an instance, see the PSF() class documentation :return: instance of PSF() class """ if self._psf_type == 'GAUSSIAN': ...
python
def psf_class(self): """ creates instance of PSF() class based on knowledge of the observations For the full possibility of how to create such an instance, see the PSF() class documentation :return: instance of PSF() class """ if self._psf_type == 'GAUSSIAN': ...
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sibirrer/lenstronomy
lenstronomy/Workflow/update_manager.py
UpdateManager.update_options
def update_options(self, kwargs_model, kwargs_constraints, kwargs_likelihood): """ updates the options by overwriting the kwargs with the new ones being added/changed WARNING: some updates may not be valid depending on the model options. Use carefully! :param kwargs_model: :para...
python
def update_options(self, kwargs_model, kwargs_constraints, kwargs_likelihood): """ updates the options by overwriting the kwargs with the new ones being added/changed WARNING: some updates may not be valid depending on the model options. Use carefully! :param kwargs_model: :para...
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updates the options by overwriting the kwargs with the new ones being added/changed WARNING: some updates may not be valid depending on the model options. Use carefully! :param kwargs_model: :param kwargs_constraints: :param kwargs_likelihood: :return:
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sibirrer/lenstronomy
lenstronomy/Workflow/update_manager.py
UpdateManager.update_limits
def update_limits(self, change_source_lower_limit=None, change_source_upper_limit=None): """ updates the limits (lower and upper) of the update manager instance :param change_source_lower_limit: [[i_model, ['param_name', ...], [value1, value2, ...]]] :return: updates internal state of l...
python
def update_limits(self, change_source_lower_limit=None, change_source_upper_limit=None): """ updates the limits (lower and upper) of the update manager instance :param change_source_lower_limit: [[i_model, ['param_name', ...], [value1, value2, ...]]] :return: updates internal state of l...
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train
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sibirrer/lenstronomy
lenstronomy/Workflow/update_manager.py
UpdateManager.update_fixed
def update_fixed(self, kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps, kwargs_cosmo, lens_add_fixed=[], source_add_fixed=[], lens_light_add_fixed=[], ps_add_fixed=[], cosmo_add_fixed=[], lens_remove_fixed=[], source_remove_fixed=[], lens_light_remove_fixed=[], ps_remo...
python
def update_fixed(self, kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps, kwargs_cosmo, lens_add_fixed=[], source_add_fixed=[], lens_light_add_fixed=[], ps_add_fixed=[], cosmo_add_fixed=[], lens_remove_fixed=[], source_remove_fixed=[], lens_light_remove_fixed=[], ps_remo...
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adds the values of the keyword arguments that are stated in the _add_fixed to the existing fixed arguments. :param kwargs_lens: :param kwargs_source: :param kwargs_lens_light: :param kwargs_ps: :param kwargs_cosmo: :param lens_add_fixed: :param source_add_fixed: ...
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train
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sibirrer/lenstronomy
lenstronomy/GalKin/analytic_kinematics.py
AnalyticKinematics.vel_disp
def vel_disp(self, gamma, theta_E, r_eff, r_ani, R_slit, dR_slit, FWHM, rendering_number=1000): """ computes the averaged LOS velocity dispersion in the slit (convolved) :param gamma: power-law slope of the mass profile (isothermal = 2) :param theta_E: Einstein radius of the lens (in ar...
python
def vel_disp(self, gamma, theta_E, r_eff, r_ani, R_slit, dR_slit, FWHM, rendering_number=1000): """ computes the averaged LOS velocity dispersion in the slit (convolved) :param gamma: power-law slope of the mass profile (isothermal = 2) :param theta_E: Einstein radius of the lens (in ar...
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computes the averaged LOS velocity dispersion in the slit (convolved) :param gamma: power-law slope of the mass profile (isothermal = 2) :param theta_E: Einstein radius of the lens (in arcseconds) :param r_eff: half light radius of the Hernquist profile (or as an approximation of any other prof...
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train
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sibirrer/lenstronomy
lenstronomy/GalKin/analytic_kinematics.py
AnalyticKinematics.vel_disp_one
def vel_disp_one(self, gamma, rho0_r0_gamma, r_eff, r_ani, R_slit, dR_slit, FWHM): """ computes one realisation of the velocity dispersion realized in the slit :param gamma: power-law slope of the mass profile (isothermal = 2) :param rho0_r0_gamma: combination of Einstein radius and pow...
python
def vel_disp_one(self, gamma, rho0_r0_gamma, r_eff, r_ani, R_slit, dR_slit, FWHM): """ computes one realisation of the velocity dispersion realized in the slit :param gamma: power-law slope of the mass profile (isothermal = 2) :param rho0_r0_gamma: combination of Einstein radius and pow...
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computes one realisation of the velocity dispersion realized in the slit :param gamma: power-law slope of the mass profile (isothermal = 2) :param rho0_r0_gamma: combination of Einstein radius and power-law slope as equation (14) in Suyu+ 2010 :param r_eff: half light radius of the Hernquist pr...
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train
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sibirrer/lenstronomy
lenstronomy/GalKin/analytic_kinematics.py
AnalyticKinematics.R_r
def R_r(self, r): """ draws a random projection from radius r in 2d and 1d :param r: 3d radius :return: R, x, y """ phi = np.random.uniform(0, 2*np.pi) theta = np.random.uniform(0, np.pi) x = r * np.sin(theta) * np.cos(phi) y = r * np.sin(theta) * ...
python
def R_r(self, r): """ draws a random projection from radius r in 2d and 1d :param r: 3d radius :return: R, x, y """ phi = np.random.uniform(0, 2*np.pi) theta = np.random.uniform(0, np.pi) x = r * np.sin(theta) * np.cos(phi) y = r * np.sin(theta) * ...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/GalKin/analytic_kinematics.py#L101-L112
sibirrer/lenstronomy
lenstronomy/GalKin/analytic_kinematics.py
AnalyticKinematics.sigma_s2
def sigma_s2(self, r, R, r_ani, a, gamma, rho0_r0_gamma): """ projected velocity dispersion :param r: :param R: :param r_ani: :param a: :param gamma: :param phi_E: :return: """ beta = self._beta_ani(r, r_ani) return (1 - bet...
python
def sigma_s2(self, r, R, r_ani, a, gamma, rho0_r0_gamma): """ projected velocity dispersion :param r: :param R: :param r_ani: :param a: :param gamma: :param phi_E: :return: """ beta = self._beta_ani(r, r_ani) return (1 - bet...
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projected velocity dispersion :param r: :param R: :param r_ani: :param a: :param gamma: :param phi_E: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/GalKin/analytic_kinematics.py#L144-L156
sibirrer/lenstronomy
lenstronomy/GalKin/analytic_kinematics.py
AnalyticKinematics.sigma_r2
def sigma_r2(self, r, a, gamma, rho0_r0_gamma, r_ani): """ equation (19) in Suyu+ 2010 """ # first term prefac1 = 4*np.pi * const.G * a**(-gamma) * rho0_r0_gamma / (3-gamma) prefac2 = r * (r + a)**3/(r**2 + r_ani**2) hyp1 = vel_util.hyp_2F1(a=2+gamma, b=gamma, c=3...
python
def sigma_r2(self, r, a, gamma, rho0_r0_gamma, r_ani): """ equation (19) in Suyu+ 2010 """ # first term prefac1 = 4*np.pi * const.G * a**(-gamma) * rho0_r0_gamma / (3-gamma) prefac2 = r * (r + a)**3/(r**2 + r_ani**2) hyp1 = vel_util.hyp_2F1(a=2+gamma, b=gamma, c=3...
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equation (19) in Suyu+ 2010
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/GalKin/analytic_kinematics.py#L158-L168
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.ellipticity_lens_light
def ellipticity_lens_light(self, kwargs_lens_light, center_x=0, center_y=0, model_bool_list=None, deltaPix=None, numPix=None): """ make sure that the window covers all the light, otherwise the moments may give to low answers. :param kwargs_lens_light: :par...
python
def ellipticity_lens_light(self, kwargs_lens_light, center_x=0, center_y=0, model_bool_list=None, deltaPix=None, numPix=None): """ make sure that the window covers all the light, otherwise the moments may give to low answers. :param kwargs_lens_light: :par...
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make sure that the window covers all the light, otherwise the moments may give to low answers. :param kwargs_lens_light: :param center_x: :param center_y: :param model_bool_list: :param deltaPix: :param numPix: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L42-L66
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.half_light_radius_lens
def half_light_radius_lens(self, kwargs_lens_light, center_x=0, center_y=0, model_bool_list=None, deltaPix=None, numPix=None): """ computes numerically the half-light-radius of the deflector light and the total photon flux :param kwargs_lens_light: :return: """ if model_...
python
def half_light_radius_lens(self, kwargs_lens_light, center_x=0, center_y=0, model_bool_list=None, deltaPix=None, numPix=None): """ computes numerically the half-light-radius of the deflector light and the total photon flux :param kwargs_lens_light: :return: """ if model_...
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computes numerically the half-light-radius of the deflector light and the total photon flux :param kwargs_lens_light: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L68-L86
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.half_light_radius_source
def half_light_radius_source(self, kwargs_source, center_x=0, center_y=0, deltaPix=None, numPix=None): """ computes numerically the half-light-radius of the deflector light and the total photon flux :param kwargs_source: :return: """ if numPix is None: numPix...
python
def half_light_radius_source(self, kwargs_source, center_x=0, center_y=0, deltaPix=None, numPix=None): """ computes numerically the half-light-radius of the deflector light and the total photon flux :param kwargs_source: :return: """ if numPix is None: numPix...
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computes numerically the half-light-radius of the deflector light and the total photon flux :param kwargs_source: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L88-L104
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis._lens_light_internal
def _lens_light_internal(self, x_grid, y_grid, kwargs_lens_light, model_bool_list=None): """ evaluates only part of the light profiles :param x_grid: :param y_grid: :param kwargs_lens_light: :return: """ if model_bool_list is None: model_bool_...
python
def _lens_light_internal(self, x_grid, y_grid, kwargs_lens_light, model_bool_list=None): """ evaluates only part of the light profiles :param x_grid: :param y_grid: :param kwargs_lens_light: :return: """ if model_bool_list is None: model_bool_...
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evaluates only part of the light profiles :param x_grid: :param y_grid: :param kwargs_lens_light: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L106-L122
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.multi_gaussian_lens_light
def multi_gaussian_lens_light(self, kwargs_lens_light, model_bool_list=None, e1=0, e2=0, n_comp=20, deltaPix=None, numPix=None): """ multi-gaussian decomposition of the lens light profile (in 1-dimension) :param kwargs_lens_light: :param n_comp: :return: """ if '...
python
def multi_gaussian_lens_light(self, kwargs_lens_light, model_bool_list=None, e1=0, e2=0, n_comp=20, deltaPix=None, numPix=None): """ multi-gaussian decomposition of the lens light profile (in 1-dimension) :param kwargs_lens_light: :param n_comp: :return: """ if '...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L124-L147
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.multi_gaussian_lens
def multi_gaussian_lens(self, kwargs_lens, model_bool_list=None, e1=0, e2=0, n_comp=20): """ multi-gaussian lens model in convergence space :param kwargs_lens: :param n_comp: :return: """ if 'center_x' in kwargs_lens[0]: center_x = kwargs_lens[0]['cen...
python
def multi_gaussian_lens(self, kwargs_lens, model_bool_list=None, e1=0, e2=0, n_comp=20): """ multi-gaussian lens model in convergence space :param kwargs_lens: :param n_comp: :return: """ if 'center_x' in kwargs_lens[0]: center_x = kwargs_lens[0]['cen...
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multi-gaussian lens model in convergence space :param kwargs_lens: :param n_comp: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L149-L175
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.flux_components
def flux_components(self, kwargs_light, n_grid=400, delta_grid=0.01, deltaPix=0.05, type="lens"): """ computes the total flux in each component of the model :param kwargs_light: :param n_grid: :param delta_grid: :return: """ flux_list = [] R_h_lis...
python
def flux_components(self, kwargs_light, n_grid=400, delta_grid=0.01, deltaPix=0.05, type="lens"): """ computes the total flux in each component of the model :param kwargs_light: :param n_grid: :param delta_grid: :return: """ flux_list = [] R_h_lis...
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computes the total flux in each component of the model :param kwargs_light: :param n_grid: :param delta_grid: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L177-L204
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.error_map_source
def error_map_source(self, kwargs_source, x_grid, y_grid, cov_param): """ variance of the linear source reconstruction in the source plane coordinates, computed by the diagonal elements of the covariance matrix of the source reconstruction as a sum of the errors of the basis set. ...
python
def error_map_source(self, kwargs_source, x_grid, y_grid, cov_param): """ variance of the linear source reconstruction in the source plane coordinates, computed by the diagonal elements of the covariance matrix of the source reconstruction as a sum of the errors of the basis set. ...
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variance of the linear source reconstruction in the source plane coordinates, computed by the diagonal elements of the covariance matrix of the source reconstruction as a sum of the errors of the basis set. :param kwargs_source: keyword arguments of source model :param x_grid: x-axis of...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L206-L226
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.light2mass_interpol
def light2mass_interpol(lens_light_model_list, kwargs_lens_light, numPix=100, deltaPix=0.05, subgrid_res=5, center_x=0, center_y=0): """ takes a lens light model and turns it numerically in a lens model (with all lensmodel quantities computed on a grid). Then provides an interpolated grid for th...
python
def light2mass_interpol(lens_light_model_list, kwargs_lens_light, numPix=100, deltaPix=0.05, subgrid_res=5, center_x=0, center_y=0): """ takes a lens light model and turns it numerically in a lens model (with all lensmodel quantities computed on a grid). Then provides an interpolated grid for th...
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takes a lens light model and turns it numerically in a lens model (with all lensmodel quantities computed on a grid). Then provides an interpolated grid for the quantities. :param kwargs_lens_light: lens light keyword argument list :param numPix: number of pixels per axis for the return interpo...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L253-L303
sibirrer/lenstronomy
lenstronomy/Analysis/lens_analysis.py
LensAnalysis.mass_fraction_within_radius
def mass_fraction_within_radius(self, kwargs_lens, center_x, center_y, theta_E, numPix=100): """ computes the mean convergence of all the different lens model components within a spherical aperture :param kwargs_lens: lens model keyword argument list :param center_x: center of the apert...
python
def mass_fraction_within_radius(self, kwargs_lens, center_x, center_y, theta_E, numPix=100): """ computes the mean convergence of all the different lens model components within a spherical aperture :param kwargs_lens: lens model keyword argument list :param center_x: center of the apert...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Analysis/lens_analysis.py#L305-L324
sibirrer/lenstronomy
lenstronomy/PointSource/point_source.py
PointSource.update_search_window
def update_search_window(self, search_window, x_center, y_center): """ update the search area for the lens equation solver :param search_window: search_window: window size of the image position search with the lens equation solver. :param x_center: center of search window :param...
python
def update_search_window(self, search_window, x_center, y_center): """ update the search area for the lens equation solver :param search_window: search_window: window size of the image position search with the lens equation solver. :param x_center: center of search window :param...
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update the search area for the lens equation solver :param search_window: search_window: window size of the image position search with the lens equation solver. :param x_center: center of search window :param y_center: center of search window :return: updated self instances
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source.py#L60-L69
sibirrer/lenstronomy
lenstronomy/PointSource/point_source.py
PointSource.point_source_list
def point_source_list(self, kwargs_ps, kwargs_lens, k=None): """ returns the coordinates and amplitudes of all point sources in a single array :param kwargs_ps: :param kwargs_lens: :return: """ ra_list, dec_list = self.image_position(kwargs_ps, kwargs_lens, k=k) ...
python
def point_source_list(self, kwargs_ps, kwargs_lens, k=None): """ returns the coordinates and amplitudes of all point sources in a single array :param kwargs_ps: :param kwargs_lens: :return: """ ra_list, dec_list = self.image_position(kwargs_ps, kwargs_lens, k=k) ...
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returns the coordinates and amplitudes of all point sources in a single array :param kwargs_ps: :param kwargs_lens: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source.py#L140-L156
sibirrer/lenstronomy
lenstronomy/PointSource/point_source.py
PointSource.image_amplitude
def image_amplitude(self, kwargs_ps, kwargs_lens, k=None): """ returns the image amplitudes :param kwargs_ps: :param kwargs_lens: :return: """ amp_list = [] for i, model in enumerate(self._point_source_list): if k is None or k == i: ...
python
def image_amplitude(self, kwargs_ps, kwargs_lens, k=None): """ returns the image amplitudes :param kwargs_ps: :param kwargs_lens: :return: """ amp_list = [] for i, model in enumerate(self._point_source_list): if k is None or k == i: ...
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returns the image amplitudes :param kwargs_ps: :param kwargs_lens: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source.py#L168-L184
sibirrer/lenstronomy
lenstronomy/PointSource/point_source.py
PointSource.source_amplitude
def source_amplitude(self, kwargs_ps, kwargs_lens): """ returns the source amplitudes :param kwargs_ps: :param kwargs_lens: :return: """ amp_list = [] for i, model in enumerate(self._point_source_list): amp_list.append(model.source_amplitude(k...
python
def source_amplitude(self, kwargs_ps, kwargs_lens): """ returns the source amplitudes :param kwargs_ps: :param kwargs_lens: :return: """ amp_list = [] for i, model in enumerate(self._point_source_list): amp_list.append(model.source_amplitude(k...
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returns the source amplitudes :param kwargs_ps: :param kwargs_lens: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source.py#L186-L197
sibirrer/lenstronomy
lenstronomy/PointSource/point_source.py
PointSource.check_image_positions
def check_image_positions(self, kwargs_ps, kwargs_lens, tolerance=0.001): """ checks whether the point sources in kwargs_ps satisfy the lens equation with a tolerance (computed by ray-tracing in the source plane) :param kwargs_ps: :param kwargs_lens: :param tolerance: ...
python
def check_image_positions(self, kwargs_ps, kwargs_lens, tolerance=0.001): """ checks whether the point sources in kwargs_ps satisfy the lens equation with a tolerance (computed by ray-tracing in the source plane) :param kwargs_ps: :param kwargs_lens: :param tolerance: ...
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checks whether the point sources in kwargs_ps satisfy the lens equation with a tolerance (computed by ray-tracing in the source plane) :param kwargs_ps: :param kwargs_lens: :param tolerance: :return: bool: True, if requirement on tolerance is fulfilled, False if not.
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source.py#L258-L277
sibirrer/lenstronomy
lenstronomy/PointSource/point_source.py
PointSource.re_normalize_flux
def re_normalize_flux(self, kwargs_ps, norm_factor): """ renormalizes the point source amplitude keywords by a factor :param kwargs_ps_updated: :param norm_factor: :return: """ for i, model in enumerate(self.point_source_type_list): if model == 'UNLEN...
python
def re_normalize_flux(self, kwargs_ps, norm_factor): """ renormalizes the point source amplitude keywords by a factor :param kwargs_ps_updated: :param norm_factor: :return: """ for i, model in enumerate(self.point_source_type_list): if model == 'UNLEN...
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renormalizes the point source amplitude keywords by a factor :param kwargs_ps_updated: :param norm_factor: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/PointSource/point_source.py#L279-L295
sibirrer/lenstronomy
lenstronomy/LensModel/lens_model_extensions.py
LensModelExtensions.magnification_finite
def magnification_finite(self, x_pos, y_pos, kwargs_lens, source_sigma=0.003, window_size=0.1, grid_number=100, shape="GAUSSIAN", polar_grid=False, aspect_ratio=0.5): """ returns the magnification of an extended source with Gaussian light profile :param x_pos: x-axis...
python
def magnification_finite(self, x_pos, y_pos, kwargs_lens, source_sigma=0.003, window_size=0.1, grid_number=100, shape="GAUSSIAN", polar_grid=False, aspect_ratio=0.5): """ returns the magnification of an extended source with Gaussian light profile :param x_pos: x-axis...
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returns the magnification of an extended source with Gaussian light profile :param x_pos: x-axis positons of point sources :param y_pos: y-axis position of point sources :param kwargs_lens: lens model kwargs :param source_sigma: Gaussian sigma in arc sec in source :param window_s...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/lens_model_extensions.py#L25-L71
sibirrer/lenstronomy
lenstronomy/LensModel/lens_model_extensions.py
LensModelExtensions._tiling_crit
def _tiling_crit(self, edge1, edge2, edge_90, max_order, kwargs_lens): """ tiles a rectangular triangle and compares the signs of the magnification :param edge1: [ra_coord, dec_coord, magnification] :param edge2: [ra_coord, dec_coord, magnification] :param edge_90: [ra_coord, de...
python
def _tiling_crit(self, edge1, edge2, edge_90, max_order, kwargs_lens): """ tiles a rectangular triangle and compares the signs of the magnification :param edge1: [ra_coord, dec_coord, magnification] :param edge2: [ra_coord, dec_coord, magnification] :param edge_90: [ra_coord, de...
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tiles a rectangular triangle and compares the signs of the magnification :param edge1: [ra_coord, dec_coord, magnification] :param edge2: [ra_coord, dec_coord, magnification] :param edge_90: [ra_coord, dec_coord, magnification] :param max_order: maximal order to fold triangle :r...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/lens_model_extensions.py#L106-L142
sibirrer/lenstronomy
lenstronomy/LensModel/lens_model_extensions.py
LensModelExtensions.effective_einstein_radius
def effective_einstein_radius(self, kwargs_lens_list, k=None, spacing=1000): """ computes the radius with mean convergence=1 :param kwargs_lens: :param spacing: number of annular bins to compute the convergence (resolution of the Einstein radius estimate) :return: """ ...
python
def effective_einstein_radius(self, kwargs_lens_list, k=None, spacing=1000): """ computes the radius with mean convergence=1 :param kwargs_lens: :param spacing: number of annular bins to compute the convergence (resolution of the Einstein radius estimate) :return: """ ...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/lens_model_extensions.py#L178-L212
sibirrer/lenstronomy
lenstronomy/LensModel/lens_model_extensions.py
LensModelExtensions.external_lensing_effect
def external_lensing_effect(self, kwargs_lens, lens_model_internal_bool=None): """ computes deflection, shear and convergence at (0,0) for those part of the lens model not included in the main deflector :param kwargs_lens: :return: """ alpha0_x, alpha0_y = 0, 0 k...
python
def external_lensing_effect(self, kwargs_lens, lens_model_internal_bool=None): """ computes deflection, shear and convergence at (0,0) for those part of the lens model not included in the main deflector :param kwargs_lens: :return: """ alpha0_x, alpha0_y = 0, 0 k...
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computes deflection, shear and convergence at (0,0) for those part of the lens model not included in the main deflector :param kwargs_lens: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/lens_model_extensions.py#L214-L235
sibirrer/lenstronomy
lenstronomy/LensModel/lens_model_extensions.py
LensModelExtensions.lens_center
def lens_center(self, kwargs_lens, k=None, bool_list=None, numPix=200, deltaPix=0.01, center_x_init=0, center_y_init=0): """ computes the convergence weighted center of a lens model :param kwargs_lens: lens model keyword argument list :param bool_list: bool list (optional) to include ce...
python
def lens_center(self, kwargs_lens, k=None, bool_list=None, numPix=200, deltaPix=0.01, center_x_init=0, center_y_init=0): """ computes the convergence weighted center of a lens model :param kwargs_lens: lens model keyword argument list :param bool_list: bool list (optional) to include ce...
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computes the convergence weighted center of a lens model :param kwargs_lens: lens model keyword argument list :param bool_list: bool list (optional) to include certain models or not :return: center_x, center_y
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/lens_model_extensions.py#L255-L276
sibirrer/lenstronomy
lenstronomy/LensModel/lens_model_extensions.py
LensModelExtensions.profile_slope
def profile_slope(self, kwargs_lens_list, lens_model_internal_bool=None, num_points=10): """ computes the logarithmic power-law slope of a profile :param kwargs_lens_list: lens model keyword argument list :param lens_model_internal_bool: bool list, indicate which part of the model to co...
python
def profile_slope(self, kwargs_lens_list, lens_model_internal_bool=None, num_points=10): """ computes the logarithmic power-law slope of a profile :param kwargs_lens_list: lens model keyword argument list :param lens_model_internal_bool: bool list, indicate which part of the model to co...
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computes the logarithmic power-law slope of a profile :param kwargs_lens_list: lens model keyword argument list :param lens_model_internal_bool: bool list, indicate which part of the model to consider :param num_points: number of estimates around the Einstein radius :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/lens_model_extensions.py#L278-L303
sibirrer/lenstronomy
lenstronomy/LensModel/numeric_lens_differentials.py
NumericLens.kappa
def kappa(self, x, y, kwargs, diff=diff): """ computes the convergence :return: kappa """ f_xx, f_xy, f_yx, f_yy = self.hessian(x, y, kwargs, diff=diff) kappa = 1./2 * (f_xx + f_yy) return kappa
python
def kappa(self, x, y, kwargs, diff=diff): """ computes the convergence :return: kappa """ f_xx, f_xy, f_yx, f_yy = self.hessian(x, y, kwargs, diff=diff) kappa = 1./2 * (f_xx + f_yy) return kappa
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computes the convergence :return: kappa
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/numeric_lens_differentials.py#L13-L20
sibirrer/lenstronomy
lenstronomy/LensModel/numeric_lens_differentials.py
NumericLens.gamma
def gamma(self, x, y, kwargs, diff=diff): """ computes the shear :return: gamma1, gamma2 """ f_xx, f_xy, f_yx, f_yy = self.hessian(x, y, kwargs, diff=diff) gamma1 = 1./2 * (f_xx - f_yy) gamma2 = f_xy return gamma1, gamma2
python
def gamma(self, x, y, kwargs, diff=diff): """ computes the shear :return: gamma1, gamma2 """ f_xx, f_xy, f_yx, f_yy = self.hessian(x, y, kwargs, diff=diff) gamma1 = 1./2 * (f_xx - f_yy) gamma2 = f_xy return gamma1, gamma2
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computes the shear :return: gamma1, gamma2
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/numeric_lens_differentials.py#L22-L30
sibirrer/lenstronomy
lenstronomy/LensModel/numeric_lens_differentials.py
NumericLens.magnification
def magnification(self, x, y, kwargs, diff=diff): """ computes the magnification :return: potential """ f_xx, f_xy, f_yx, f_yy = self.hessian(x, y, kwargs, diff=diff) det_A = (1 - f_xx) * (1 - f_yy) - f_xy*f_yx return 1/det_A
python
def magnification(self, x, y, kwargs, diff=diff): """ computes the magnification :return: potential """ f_xx, f_xy, f_yx, f_yy = self.hessian(x, y, kwargs, diff=diff) det_A = (1 - f_xx) * (1 - f_yy) - f_xy*f_yx return 1/det_A
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computes the magnification :return: potential
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/numeric_lens_differentials.py
NumericLens.hessian
def hessian(self, x, y, kwargs, diff=diff): """ computes the differentials f_xx, f_yy, f_xy from f_x and f_y :return: f_xx, f_xy, f_yx, f_yy """ alpha_ra, alpha_dec = self.alpha(x, y, kwargs) alpha_ra_dx, alpha_dec_dx = self.alpha(x + diff, y, kwargs) alpha_ra_dy...
python
def hessian(self, x, y, kwargs, diff=diff): """ computes the differentials f_xx, f_yy, f_xy from f_x and f_y :return: f_xx, f_xy, f_yx, f_yy """ alpha_ra, alpha_dec = self.alpha(x, y, kwargs) alpha_ra_dx, alpha_dec_dx = self.alpha(x + diff, y, kwargs) alpha_ra_dy...
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computes the differentials f_xx, f_yy, f_xy from f_x and f_y :return: f_xx, f_xy, f_yx, f_yy
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train
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sibirrer/lenstronomy
lenstronomy/Cosmo/background.py
Background.D_dt
def D_dt(self, z_lens, z_source): """ time-delay distance :param z_lens: redshift of lens :param z_source: redshift of source :return: time-delay distance in units of Mpc """ return self.D_xy(0, z_lens) * self.D_xy(0, z_source) / self.D_xy(z_lens, z_source) * (1 ...
python
def D_dt(self, z_lens, z_source): """ time-delay distance :param z_lens: redshift of lens :param z_source: redshift of source :return: time-delay distance in units of Mpc """ return self.D_xy(0, z_lens) * self.D_xy(0, z_source) / self.D_xy(z_lens, z_source) * (1 ...
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time-delay distance :param z_lens: redshift of lens :param z_source: redshift of source :return: time-delay distance in units of Mpc
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train
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sibirrer/lenstronomy
lenstronomy/Cosmo/background.py
Background.rho_crit
def rho_crit(self): """ critical density :return: value in M_sol/Mpc^3 """ h = self.cosmo.H(0).value / 100. return 3 * h ** 2 / (8 * np.pi * const.G) * 10 ** 10 * const.Mpc / const.M_sun
python
def rho_crit(self): """ critical density :return: value in M_sol/Mpc^3 """ h = self.cosmo.H(0).value / 100. return 3 * h ** 2 / (8 * np.pi * const.G) * 10 ** 10 * const.Mpc / const.M_sun
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critical density :return: value in M_sol/Mpc^3
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train
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sibirrer/lenstronomy
lenstronomy/LightModel/Profiles/shapelets.py
Shapelets.hermval
def hermval(self, x, n_array, tensor=True): """ computes the Hermit polynomial as numpy.polynomial.hermite.hermval difference: for values more than sqrt(n_max + 1) * cut_scale, the value is set to zero this should be faster and numerically stable :param x: array of values ...
python
def hermval(self, x, n_array, tensor=True): """ computes the Hermit polynomial as numpy.polynomial.hermite.hermval difference: for values more than sqrt(n_max + 1) * cut_scale, the value is set to zero this should be faster and numerically stable :param x: array of values ...
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computes the Hermit polynomial as numpy.polynomial.hermite.hermval difference: for values more than sqrt(n_max + 1) * cut_scale, the value is set to zero this should be faster and numerically stable :param x: array of values :param n_array: list of coeffs in H_n :param cut_scale...
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train
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sibirrer/lenstronomy
lenstronomy/LightModel/Profiles/shapelets.py
Shapelets.H_n
def H_n(self, n, x): """ constructs the Hermite polynomial of order n at position x (dimensionless) :param n: The n'the basis function. :type name: int. :param x: 1-dim position (dimensionless) :type state: float or numpy array. :returns: array-- H_n(x). ...
python
def H_n(self, n, x): """ constructs the Hermite polynomial of order n at position x (dimensionless) :param n: The n'the basis function. :type name: int. :param x: 1-dim position (dimensionless) :type state: float or numpy array. :returns: array-- H_n(x). ...
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constructs the Hermite polynomial of order n at position x (dimensionless) :param n: The n'the basis function. :type name: int. :param x: 1-dim position (dimensionless) :type state: float or numpy array. :returns: array-- H_n(x). :raises: AttributeError, KeyError
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train
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sibirrer/lenstronomy
lenstronomy/LightModel/Profiles/shapelets.py
Shapelets.pre_calc
def pre_calc(self, x, y, beta, n_order, center_x, center_y): """ calculates the H_n(x) and H_n(y) for a given x-array and y-array :param x: :param y: :param amp: :param beta: :param n_order: :param center_x: :param center_y: :return: list o...
python
def pre_calc(self, x, y, beta, n_order, center_x, center_y): """ calculates the H_n(x) and H_n(y) for a given x-array and y-array :param x: :param y: :param amp: :param beta: :param n_order: :param center_x: :param center_y: :return: list o...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LightModel/Profiles/shapelets.py#L113-L139
sibirrer/lenstronomy
lenstronomy/LightModel/Profiles/shapelets.py
ShapeletSet.decomposition
def decomposition(self, image, x, y, n_max, beta, deltaPix, center_x=0, center_y=0): """ decomposes an image into the shapelet coefficients in same order as for the function call :param image: :param x: :param y: :param n_max: :param beta: :param center_x:...
python
def decomposition(self, image, x, y, n_max, beta, deltaPix, center_x=0, center_y=0): """ decomposes an image into the shapelet coefficients in same order as for the function call :param image: :param x: :param y: :param n_max: :param beta: :param center_x:...
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/Optimizer/particle_swarm.py
ParticleSwarmOptimizer._sample
def _sample(self, maxIter=1000, c1=1.193, c2=1.193, lookback = 0.25, standard_dev = None): """ Launches the PSO. Yields the complete swarm per iteration :param maxIter: maximum iterations :param c1: cognitive weight :param c2: social weight :param lookback: percentange o...
python
def _sample(self, maxIter=1000, c1=1.193, c2=1.193, lookback = 0.25, standard_dev = None): """ Launches the PSO. Yields the complete swarm per iteration :param maxIter: maximum iterations :param c1: cognitive weight :param c2: social weight :param lookback: percentange o...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Optimizer/particle_swarm.py#L40-L92
sibirrer/lenstronomy
lenstronomy/LensModel/Optimizer/particle_swarm.py
ParticleSwarmOptimizer._optimize
def _optimize(self, maxIter=1000, c1=1.193, c2=1.193, lookback=0.25, standard_dev=None): """ :param maxIter: maximum number of swarm iterations :param c1: social weight :param c2: personal weight :param lookback: how many particles to assess when considering convergence ...
python
def _optimize(self, maxIter=1000, c1=1.193, c2=1.193, lookback=0.25, standard_dev=None): """ :param maxIter: maximum number of swarm iterations :param c1: social weight :param c2: personal weight :param lookback: how many particles to assess when considering convergence ...
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:param maxIter: maximum number of swarm iterations :param c1: social weight :param c2: personal weight :param lookback: how many particles to assess when considering convergence :param standard_dev: the standard deviation of the last lookback # of particles used to determine convergence ...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Optimizer/particle_swarm.py#L94-L112
sibirrer/lenstronomy
lenstronomy/LensModel/Optimizer/particle_swarm.py
Particle.create
def create(cls, paramCount): """ Creates a new particle without position, velocity and -inf as fitness """ return Particle(numpy.array([[]]*paramCount), numpy.array([[]]*paramCount), -numpy.Inf)
python
def create(cls, paramCount): """ Creates a new particle without position, velocity and -inf as fitness """ return Particle(numpy.array([[]]*paramCount), numpy.array([[]]*paramCount), -numpy.Inf)
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Creates a new particle without position, velocity and -inf as fitness
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Optimizer/particle_swarm.py#L167-L174
sibirrer/lenstronomy
lenstronomy/LensModel/Optimizer/particle_swarm.py
Particle.copy
def copy(self): """ Creates a copy of itself """ return Particle(copy(self.position), copy(self.velocity), self.fitness)
python
def copy(self): """ Creates a copy of itself """ return Particle(copy(self.position), copy(self.velocity), self.fitness)
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/Optimizer/particle_swarm.py#L182-L188
sibirrer/lenstronomy
lenstronomy/ImSim/MultiBand/multi_data_base.py
MultiDataBase.reset_point_source_cache
def reset_point_source_cache(self, bool=True): """ deletes all the cache in the point source class and saves it from then on :return: """ for imageModel in self._imageModel_list: imageModel.reset_point_source_cache(bool=bool)
python
def reset_point_source_cache(self, bool=True): """ deletes all the cache in the point source class and saves it from then on :return: """ for imageModel in self._imageModel_list: imageModel.reset_point_source_cache(bool=bool)
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train
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sibirrer/lenstronomy
lenstronomy/Util/analysis_util.py
moments
def moments(I_xy_input, x, y): """ compute quadrupole moments from a light distribution :param I_xy: light distribution :param x: x-coordinates of I_xy :param y: y-coordinates of I_xy :return: Q_xx, Q_xy, Q_yy """ I_xy = copy.deepcopy(I_xy_input) background = np.minimum(0, np.min(I_...
python
def moments(I_xy_input, x, y): """ compute quadrupole moments from a light distribution :param I_xy: light distribution :param x: x-coordinates of I_xy :param y: y-coordinates of I_xy :return: Q_xx, Q_xy, Q_yy """ I_xy = copy.deepcopy(I_xy_input) background = np.minimum(0, np.min(I_...
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compute quadrupole moments from a light distribution :param I_xy: light distribution :param x: x-coordinates of I_xy :param y: y-coordinates of I_xy :return: Q_xx, Q_xy, Q_yy
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/Util/analysis_util.py#L93-L112
sibirrer/lenstronomy
lenstronomy/Util/analysis_util.py
ellipticities
def ellipticities(I_xy, x, y): """ compute ellipticities of a light distribution :param I_xy: :param x: :param y: :return: """ Q_xx, Q_xy, Q_yy, bkg = moments(I_xy, x, y) norm = Q_xx + Q_yy + 2 * np.sqrt(Q_xx*Q_yy - Q_xy**2) e1 = (Q_xx - Q_yy) / norm e2 = 2 * Q_xy / norm ...
python
def ellipticities(I_xy, x, y): """ compute ellipticities of a light distribution :param I_xy: :param x: :param y: :return: """ Q_xx, Q_xy, Q_yy, bkg = moments(I_xy, x, y) norm = Q_xx + Q_yy + 2 * np.sqrt(Q_xx*Q_yy - Q_xy**2) e1 = (Q_xx - Q_yy) / norm e2 = 2 * Q_xy / norm ...
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compute ellipticities of a light distribution :param I_xy: :param x: :param y: :return:
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane.ray_shooting
def ray_shooting(self, theta_x, theta_y, kwargs_lens, k=None): """ ray-tracing (backwards light cone) :param theta_x: angle in x-direction on the image :param theta_y: angle in y-direction on the image :param kwargs_lens: :return: angles in the source plane """ ...
python
def ray_shooting(self, theta_x, theta_y, kwargs_lens, k=None): """ ray-tracing (backwards light cone) :param theta_x: angle in x-direction on the image :param theta_y: angle in y-direction on the image :param kwargs_lens: :return: angles in the source plane """ ...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L52-L73
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane.ray_shooting_partial
def ray_shooting_partial(self, x, y, alpha_x, alpha_y, z_start, z_stop, kwargs_lens, keep_range=False, include_z_start=False): """ ray-tracing through parts of the coin, starting with (x,y) and angles (alpha_x, alpha_y) at redshift z_start and then backwards to redsh...
python
def ray_shooting_partial(self, x, y, alpha_x, alpha_y, z_start, z_stop, kwargs_lens, keep_range=False, include_z_start=False): """ ray-tracing through parts of the coin, starting with (x,y) and angles (alpha_x, alpha_y) at redshift z_start and then backwards to redsh...
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ray-tracing through parts of the coin, starting with (x,y) and angles (alpha_x, alpha_y) at redshift z_start and then backwards to redshfit z_stop :param x: co-moving position [Mpc] :param y: co-moving position [Mpc] :param alpha_x: ray angle at z_start [arcsec] :param alpha_y: ...
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane.ray_shooting_partial_steps
def ray_shooting_partial_steps(self, x, y, alpha_x, alpha_y, z_start, z_stop, kwargs_lens, include_z_start=False): """ ray-tracing through parts of the coin, starting with (x,y) and angles (alpha_x, alpha_y) at redshift z_start and then backwards to redshfit z_stop. ...
python
def ray_shooting_partial_steps(self, x, y, alpha_x, alpha_y, z_start, z_stop, kwargs_lens, include_z_start=False): """ ray-tracing through parts of the coin, starting with (x,y) and angles (alpha_x, alpha_y) at redshift z_start and then backwards to redshfit z_stop. ...
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ray-tracing through parts of the coin, starting with (x,y) and angles (alpha_x, alpha_y) at redshift z_start and then backwards to redshfit z_stop. This function differs from 'ray_shooting_partial' in that it returns the angular position of the ray at each lens plane. :param x: co-movi...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L119-L188
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane.arrival_time
def arrival_time(self, theta_x, theta_y, kwargs_lens, k=None): """ light travel time relative to a straight path through the coordinate (0,0) Negative sign means earlier arrival time :param theta_x: angle in x-direction on the image :param theta_y: angle in y-direction on the im...
python
def arrival_time(self, theta_x, theta_y, kwargs_lens, k=None): """ light travel time relative to a straight path through the coordinate (0,0) Negative sign means earlier arrival time :param theta_x: angle in x-direction on the image :param theta_y: angle in y-direction on the im...
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light travel time relative to a straight path through the coordinate (0,0) Negative sign means earlier arrival time :param theta_x: angle in x-direction on the image :param theta_y: angle in y-direction on the image :param kwargs_lens: :return: travel time in unit of days
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane.alpha
def alpha(self, theta_x, theta_y, kwargs_lens, k=None): """ reduced deflection angle :param theta_x: angle in x-direction :param theta_y: angle in y-direction :param kwargs_lens: lens model kwargs :return: """ beta_x, beta_y = self.ray_shooting(theta_x, t...
python
def alpha(self, theta_x, theta_y, kwargs_lens, k=None): """ reduced deflection angle :param theta_x: angle in x-direction :param theta_y: angle in y-direction :param kwargs_lens: lens model kwargs :return: """ beta_x, beta_y = self.ray_shooting(theta_x, t...
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reduced deflection angle :param theta_x: angle in x-direction :param theta_y: angle in y-direction :param kwargs_lens: lens model kwargs :return:
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane.hessian
def hessian(self, theta_x, theta_y, kwargs_lens, k=None, diff=0.00000001): """ computes the hessian components f_xx, f_yy, f_xy from f_x and f_y with numerical differentiation :param theta_x: x-position (preferentially arcsec) :type theta_x: numpy array :param theta_y: y-positio...
python
def hessian(self, theta_x, theta_y, kwargs_lens, k=None, diff=0.00000001): """ computes the hessian components f_xx, f_yy, f_xy from f_x and f_y with numerical differentiation :param theta_x: x-position (preferentially arcsec) :type theta_x: numpy array :param theta_y: y-positio...
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computes the hessian components f_xx, f_yy, f_xy from f_x and f_y with numerical differentiation :param theta_x: x-position (preferentially arcsec) :type theta_x: numpy array :param theta_y: y-position (preferentially arcsec) :type theta_y: numpy array :param kwargs_lens: list o...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L237-L264
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane._reduced2physical_deflection
def _reduced2physical_deflection(self, alpha_reduced, idex_lens): """ alpha_reduced = D_ds/Ds alpha_physical :param alpha_reduced: reduced deflection angle :param z_lens: lens redshift :param z_source: source redshift :return: physical deflection angle """ ...
python
def _reduced2physical_deflection(self, alpha_reduced, idex_lens): """ alpha_reduced = D_ds/Ds alpha_physical :param alpha_reduced: reduced deflection angle :param z_lens: lens redshift :param z_source: source redshift :return: physical deflection angle """ ...
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alpha_reduced = D_ds/Ds alpha_physical :param alpha_reduced: reduced deflection angle :param z_lens: lens redshift :param z_source: source redshift :return: physical deflection angle
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L278-L289
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane._geometrical_delay
def _geometrical_delay(self, alpha_x, alpha_y, delta_T): """ geometrical delay (evaluated at z=0) of a light ray with an angle relative to the shortest path :param alpha_x: angle relative to a straight path :param alpha_y: angle relative to a straight path :param delta_T: transv...
python
def _geometrical_delay(self, alpha_x, alpha_y, delta_T): """ geometrical delay (evaluated at z=0) of a light ray with an angle relative to the shortest path :param alpha_x: angle relative to a straight path :param alpha_y: angle relative to a straight path :param delta_T: transv...
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geometrical delay (evaluated at z=0) of a light ray with an angle relative to the shortest path :param alpha_x: angle relative to a straight path :param alpha_y: angle relative to a straight path :param delta_T: transversal diameter distance between the start and end of the ray :return:...
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train
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sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane._lensing_potential2time_delay
def _lensing_potential2time_delay(self, potential, z_lens, z_source): """ transforms the lensing potential (in units arcsec^2) to a gravitational time-delay as measured at z=0 :param potential: lensing potential :param z_lens: redshift of the deflector :param z_source: redshift ...
python
def _lensing_potential2time_delay(self, potential, z_lens, z_source): """ transforms the lensing potential (in units arcsec^2) to a gravitational time-delay as measured at z=0 :param potential: lensing potential :param z_lens: redshift of the deflector :param z_source: redshift ...
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transforms the lensing potential (in units arcsec^2) to a gravitational time-delay as measured at z=0 :param potential: lensing potential :param z_lens: redshift of the deflector :param z_source: redshift of source for the definition of the lensing quantities :return: gravitational time...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L318-L329
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane._co_moving2angle
def _co_moving2angle(self, x, y, idex): """ transforms co-moving distances Mpc into angles on the sky (radian) :param x: co-moving distance :param y: co-moving distance :param z_lens: redshift of plane :return: angles on the sky """ T_z = self._T_z_list[i...
python
def _co_moving2angle(self, x, y, idex): """ transforms co-moving distances Mpc into angles on the sky (radian) :param x: co-moving distance :param y: co-moving distance :param z_lens: redshift of plane :return: angles on the sky """ T_z = self._T_z_list[i...
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transforms co-moving distances Mpc into angles on the sky (radian) :param x: co-moving distance :param y: co-moving distance :param z_lens: redshift of plane :return: angles on the sky
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L331-L344
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane._co_moving2angle_source
def _co_moving2angle_source(self, x, y): """ special case of the co_moving2angle definition at the source redshift :param x: :param y: :return: """ T_z = self._T_z_source theta_x = x / T_z theta_y = y / T_z return theta_x, theta_y
python
def _co_moving2angle_source(self, x, y): """ special case of the co_moving2angle definition at the source redshift :param x: :param y: :return: """ T_z = self._T_z_source theta_x = x / T_z theta_y = y / T_z return theta_x, theta_y
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special case of the co_moving2angle definition at the source redshift :param x: :param y: :return:
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L346-L357
sibirrer/lenstronomy
lenstronomy/LensModel/multi_plane.py
MultiPlane._ray_step
def _ray_step(self, x, y, alpha_x, alpha_y, delta_T): """ ray propagation with small angle approximation :param x: co-moving x-position :param y: co-moving y-position :param alpha_x: deflection angle in x-direction at (x, y) :param alpha_y: deflection angle in y-directio...
python
def _ray_step(self, x, y, alpha_x, alpha_y, delta_T): """ ray propagation with small angle approximation :param x: co-moving x-position :param y: co-moving y-position :param alpha_x: deflection angle in x-direction at (x, y) :param alpha_y: deflection angle in y-directio...
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ray propagation with small angle approximation :param x: co-moving x-position :param y: co-moving y-position :param alpha_x: deflection angle in x-direction at (x, y) :param alpha_y: deflection angle in y-direction at (x, y) :param delta_T: transversal angular diameter distance ...
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train
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/multi_plane.py#L359-L372