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daler/trackhub | trackhub/track.py | BaseTrack._str_subgroups | def _str_subgroups(self):
"""
helper function to render subgroups as a string
"""
if not self.subgroups:
return ""
return ['subGroups %s'
% ' '.join(['%s=%s' % (k, v) for (k, v) in
self.subgroups.items()])] | python | def _str_subgroups(self):
"""
helper function to render subgroups as a string
"""
if not self.subgroups:
return ""
return ['subGroups %s'
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daler/trackhub | trackhub/track.py | CompositeTrack.add_subgroups | def add_subgroups(self, subgroups):
"""
Add a list of SubGroupDefinition objects to this composite.
Note that in contrast to :meth:`BaseTrack`, which takes a single
dictionary indicating the particular subgroups for the track, this
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"""
Add a list of SubGroupDefinition objects to this composite.
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daler/trackhub | trackhub/track.py | CompositeTrack.add_subtrack | def add_subtrack(self, subtrack):
"""
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self.subtracks.append(subtrack) | python | def add_subtrack(self, subtrack):
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Add a child :class:`Track`.
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daler/trackhub | trackhub/track.py | CompositeTrack.add_view | def add_view(self, view):
"""
Add a ViewTrack object to this composite.
:param view:
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self.views.append(view) | python | def add_view(self, view):
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daler/trackhub | trackhub/track.py | CompositeTrack._str_subgroups | def _str_subgroups(self):
"""
renders subgroups to a list of strings
"""
s = []
i = 0
# if there are any views, there must be a subGroup1 view View tag=val
# as the first one. So create it automatically here
if len(self.views) > 0:
mapping =... | python | def _str_subgroups(self):
"""
renders subgroups to a list of strings
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daler/trackhub | trackhub/track.py | ViewTrack.add_tracks | def add_tracks(self, subtracks):
"""
Add one or more tracks to this view.
subtracks : Track or iterable of Tracks
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for subtrack in subtrack... | python | def add_tracks(self, subtracks):
"""
Add one or more tracks to this view.
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daler/trackhub | trackhub/track.py | SuperTrack.add_tracks | def add_tracks(self, subtracks):
"""
Add one or more tracks.
subtrack : Track or iterable of Tracks
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Add one or more tracks.
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mozilla/python_moztelemetry | moztelemetry/scalar.py | Scalar._parse_scalars | def _parse_scalars(scalars):
"""Parse the scalars from the YAML file content to a dictionary of ScalarType(s).
:return: A dictionary { 'full.scalar.label': ScalarType }
"""
scalar_dict = {}
# Scalars are defined in a fixed two-level hierarchy within the definition file.
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mozilla/python_moztelemetry | moztelemetry/parse_scalars.py | load_scalars | def load_scalars(filename, strict_type_checks=True):
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daler/trackhub | trackhub/base.py | HubComponent.add_child | def add_child(self, child):
"""
Adds self as parent to child, and then adds child.
"""
child.parent = self
self.children.append(child)
return child | python | def add_child(self, child):
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Adds self as parent to child, and then adds child.
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child.parent = self
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daler/trackhub | trackhub/base.py | HubComponent.add_parent | def add_parent(self, parent):
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daler/trackhub | trackhub/base.py | HubComponent.root | def root(self, cls=None, level=0):
"""
Returns the top-most HubComponent in the hierarchy.
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a ... | python | def root(self, cls=None, level=0):
"""
Returns the top-most HubComponent in the hierarchy.
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daler/trackhub | trackhub/base.py | HubComponent.leaves | def leaves(self, cls, level=0, intermediate=False):
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Returns an iterator of the HubComponent leaves that are of class `cls`.
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daler/trackhub | trackhub/base.py | HubComponent.render | def render(self, staging=None):
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Renders the object to file, returning a list of created files.
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/emails.py | send_request_email | def send_request_email(
authorised_text, authorised_role, authorised_persons, application,
link, is_secret):
"""Sends an email to admin asking to approve user application"""
context = CONTEXT.copy()
context['requester'] = application.applicant
context['link'] = link
context['is_secre... | python | def send_request_email(
authorised_text, authorised_role, authorised_persons, application,
link, is_secret):
"""Sends an email to admin asking to approve user application"""
context = CONTEXT.copy()
context['requester'] = application.applicant
context['link'] = link
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/emails.py | send_invite_email | def send_invite_email(application, link, is_secret):
""" Sends an email inviting someone to create an account"""
if not application.applicant.email:
return
context = CONTEXT.copy()
context['receiver'] = application.applicant
context['application'] = application
context['link'] = link
... | python | def send_invite_email(application, link, is_secret):
""" Sends an email inviting someone to create an account"""
if not application.applicant.email:
return
context = CONTEXT.copy()
context['receiver'] = application.applicant
context['application'] = application
context['link'] = link
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/emails.py | send_approved_email | def send_approved_email(
application, created_person, created_account, link, is_secret):
"""Sends an email informing person application is approved"""
if not application.applicant.email:
return
context = CONTEXT.copy()
context['receiver'] = application.applicant
context['application... | python | def send_approved_email(
application, created_person, created_account, link, is_secret):
"""Sends an email informing person application is approved"""
if not application.applicant.email:
return
context = CONTEXT.copy()
context['receiver'] = application.applicant
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Karaage-Cluster/karaage | karaage/people/models.py | _add_person_to_group | def _add_person_to_group(person, group):
""" Call datastores after adding a person to a group. """
from karaage.datastores import add_accounts_to_group
from karaage.datastores import add_accounts_to_project
from karaage.datastores import add_accounts_to_institute
a_list = person.account_set
add... | python | def _add_person_to_group(person, group):
""" Call datastores after adding a person to a group. """
from karaage.datastores import add_accounts_to_group
from karaage.datastores import add_accounts_to_project
from karaage.datastores import add_accounts_to_institute
a_list = person.account_set
add... | [
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Karaage-Cluster/karaage | karaage/people/models.py | _remove_person_from_group | def _remove_person_from_group(person, group):
""" Call datastores after removing a person from a group. """
from karaage.datastores import remove_accounts_from_group
from karaage.datastores import remove_accounts_from_project
from karaage.datastores import remove_accounts_from_institute
a_list = pe... | python | def _remove_person_from_group(person, group):
""" Call datastores after removing a person from a group. """
from karaage.datastores import remove_accounts_from_group
from karaage.datastores import remove_accounts_from_project
from karaage.datastores import remove_accounts_from_institute
a_list = pe... | [
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Karaage-Cluster/karaage | karaage/people/models.py | _members_changed | def _members_changed(
sender, instance, action, reverse, model, pk_set, **kwargs):
"""
Hook that executes whenever the group members are changed.
"""
if action == "post_add":
if not reverse:
group = instance
for person in model.objects.filter(pk__in=pk_set):
... | python | def _members_changed(
sender, instance, action, reverse, model, pk_set, **kwargs):
"""
Hook that executes whenever the group members are changed.
"""
if action == "post_add":
if not reverse:
group = instance
for person in model.objects.filter(pk__in=pk_set):
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daler/trackhub | trackhub/helpers.py | dimensions_from_subgroups | def dimensions_from_subgroups(s):
"""
Given a sorted list of subgroups, return a string appropriate to provide as
a composite track's `dimensions` arg.
Parameters
----------
s : list of SubGroup objects (or anything with a `name` attribute)
"""
letters = 'XYABCDEFGHIJKLMNOPQRSTUVWZ'
... | python | def dimensions_from_subgroups(s):
"""
Given a sorted list of subgroups, return a string appropriate to provide as
a composite track's `dimensions` arg.
Parameters
----------
s : list of SubGroup objects (or anything with a `name` attribute)
"""
letters = 'XYABCDEFGHIJKLMNOPQRSTUVWZ'
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daler/trackhub | trackhub/helpers.py | filter_composite_from_subgroups | def filter_composite_from_subgroups(s):
"""
Given a sorted list of subgroups, return a string appropriate to provide as
the a composite track's `filterComposite` argument
>>> import trackhub
>>> trackhub.helpers.filter_composite_from_subgroups(['cell', 'ab', 'lab', 'knockdown'])
'dimA dimB'
... | python | def filter_composite_from_subgroups(s):
"""
Given a sorted list of subgroups, return a string appropriate to provide as
the a composite track's `filterComposite` argument
>>> import trackhub
>>> trackhub.helpers.filter_composite_from_subgroups(['cell', 'ab', 'lab', 'knockdown'])
'dimA dimB'
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daler/trackhub | trackhub/helpers.py | hex2rgb | def hex2rgb(h):
"""
Convert hex colors to RGB tuples
Parameters
----------
h : str
String hex color value
>>> hex2rgb("#ff0033")
'255,0,51'
"""
if not h.startswith('#') or len(h) != 7:
raise ValueError("Does not look like a hex color: '{0}'".format(h))
return ',... | python | def hex2rgb(h):
"""
Convert hex colors to RGB tuples
Parameters
----------
h : str
String hex color value
>>> hex2rgb("#ff0033")
'255,0,51'
"""
if not h.startswith('#') or len(h) != 7:
raise ValueError("Does not look like a hex color: '{0}'".format(h))
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daler/trackhub | trackhub/helpers.py | sanitize | def sanitize(s, strict=True):
"""
Sanitize a string.
Spaces are converted to underscore; if strict=True they are then removed.
Parameters
----------
s : str
String to sanitize
strict : bool
If True, only alphanumeric characters are allowed. If False, a limited
set ... | python | def sanitize(s, strict=True):
"""
Sanitize a string.
Spaces are converted to underscore; if strict=True they are then removed.
Parameters
----------
s : str
String to sanitize
strict : bool
If True, only alphanumeric characters are allowed. If False, a limited
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daler/trackhub | trackhub/helpers.py | auto_track_url | def auto_track_url(track):
"""
Automatically sets the bigDataUrl for `track`.
Requirements:
* the track must be fully connected, such that its root is a Hub object
* the root Hub object must have the Hub.url attribute set
* the track must have the `source` attribute set
"""
... | python | def auto_track_url(track):
"""
Automatically sets the bigDataUrl for `track`.
Requirements:
* the track must be fully connected, such that its root is a Hub object
* the root Hub object must have the Hub.url attribute set
* the track must have the `source` attribute set
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daler/trackhub | trackhub/helpers.py | show_rendered_files | def show_rendered_files(results_dict):
"""
Parses a nested dictionary returned from :meth:`Hub.render` and just prints
the resulting files.
"""
for k, v in results_dict.items():
if isinstance(v, string_types):
print("rendered file: %s (created by: %s)" % (v, k))
else:
... | python | def show_rendered_files(results_dict):
"""
Parses a nested dictionary returned from :meth:`Hub.render` and just prints
the resulting files.
"""
for k, v in results_dict.items():
if isinstance(v, string_types):
print("rendered file: %s (created by: %s)" % (v, k))
else:
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daler/trackhub | trackhub/helpers.py | print_rendered_results | def print_rendered_results(results_dict):
"""
Pretty-prints the rendered results dictionary.
Rendered results can be multiply-nested dictionaries; this uses JSON
serialization to print a nice representation.
"""
class _HubComponentEncoder(json.JSONEncoder):
def default(self, o):
... | python | def print_rendered_results(results_dict):
"""
Pretty-prints the rendered results dictionary.
Rendered results can be multiply-nested dictionaries; this uses JSON
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"""
class _HubComponentEncoder(json.JSONEncoder):
def default(self, o):
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daler/trackhub | trackhub/helpers.py | example_bigbeds | def example_bigbeds():
"""
Returns list of example bigBed files
"""
hits = []
d = data_dir()
for fn in os.listdir(d):
fn = os.path.join(d, fn)
if os.path.splitext(fn)[-1] == '.bigBed':
hits.append(os.path.abspath(fn))
return hits | python | def example_bigbeds():
"""
Returns list of example bigBed files
"""
hits = []
d = data_dir()
for fn in os.listdir(d):
fn = os.path.join(d, fn)
if os.path.splitext(fn)[-1] == '.bigBed':
hits.append(os.path.abspath(fn))
return hits | [
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_colour | def get_colour(index):
""" get color number index. """
colours = [
'red', 'blue', 'green', 'pink',
'yellow', 'magenta', 'orange', 'cyan',
]
default_colour = 'purple'
if index < len(colours):
return colours[index]
else:
return default_colour | python | def get_colour(index):
""" get color number index. """
colours = [
'red', 'blue', 'green', 'pink',
'yellow', 'magenta', 'orange', 'cyan',
]
default_colour = 'purple'
if index < len(colours):
return colours[index]
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return default_colour | [
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_project_trend_graph_url | def get_project_trend_graph_url(project, start, end):
"""Generates a bar graph for a project. """
filename = get_project_trend_graph_filename(project, start, end)
urls = {
'graph_url': urlparse.urljoin(GRAPH_URL, filename + ".png"),
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"""Generates a bar graph for a project. """
filename = get_project_trend_graph_filename(project, start, end)
urls = {
'graph_url': urlparse.urljoin(GRAPH_URL, filename + ".png"),
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_institute_graph_url | def get_institute_graph_url(start, end):
""" Pie chart comparing institutes usage. """
filename = get_institute_graph_filename(start, end)
urls = {
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'data_url': urlparse.urljoin(GRAPH_URL, filename + ".csv"),
}
return urls | python | def get_institute_graph_url(start, end):
""" Pie chart comparing institutes usage. """
filename = get_institute_graph_filename(start, end)
urls = {
'graph_url': urlparse.urljoin(GRAPH_URL, filename + ".png"),
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_machine_graph_url | def get_machine_graph_url(start, end):
""" Pie chart comparing machines usage. """
filename = get_machine_graph_filename(start, end)
urls = {
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}
return urls | python | def get_machine_graph_url(start, end):
""" Pie chart comparing machines usage. """
filename = get_machine_graph_filename(start, end)
urls = {
'graph_url': urlparse.urljoin(GRAPH_URL, filename + ".png"),
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_trend_graph_url | def get_trend_graph_url(start, end):
""" Total trend graph for machine category. """
filename = get_trend_graph_filename(start, end)
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""" Total trend graph for machine category. """
filename = get_trend_graph_filename(start, end)
urls = {
'graph_url': urlparse.urljoin(GRAPH_URL, filename + ".png"),
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_institute_trend_graph_url | def get_institute_trend_graph_url(institute, start, end):
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""" Institute trend graph for machine category. """
filename = get_institute_trend_graph_filename(institute, start, end)
urls = {
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Karaage-Cluster/karaage | karaage/plugins/kgusage/graphs.py | get_institutes_trend_graph_urls | def get_institutes_trend_graph_urls(start, end):
""" Get all institute trend graphs. """
graph_list = []
for institute in Institute.objects.all():
urls = get_institute_trend_graph_url(institute, start, end)
urls['institute'] = institute
graph_list.append(urls)
return graph_list | python | def get_institutes_trend_graph_urls(start, end):
""" Get all institute trend graphs. """
graph_list = []
for institute in Institute.objects.all():
urls = get_institute_trend_graph_url(institute, start, end)
urls['institute'] = institute
graph_list.append(urls)
return graph_list | [
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Karaage-Cluster/karaage | karaage/common/context_processors.py | common | def common(request):
""" Set context with common variables. """
ctx = {
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'org_name': settings.ACCOUNTS_ORG_NAME,
'accounts_email': settings.ACCOUNTS_EMAIL,
'is_admin': is_admin(request),
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""" Set context with common variables. """
ctx = {
'SHIB_SUPPORTED': settings.SHIB_SUPPORTED,
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'accounts_email': settings.ACCOUNTS_EMAIL,
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/__init__.py | context_processor | def context_processor(request):
""" Set context with common variables. """
from .models import Application
ctx = {}
if request.user.is_authenticated:
person = request.user
my_applications = Application.objects.get_for_applicant(person)
requires_attention = Application.objects.re... | python | def context_processor(request):
""" Set context with common variables. """
from .models import Application
ctx = {}
if request.user.is_authenticated:
person = request.user
my_applications = Application.objects.get_for_applicant(person)
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Karaage-Cluster/karaage | karaage/people/managers.py | PersonManager._create_user | def _create_user(
self, username, email, short_name, full_name,
institute, password, is_admin, **extra_fields):
"""Creates a new active person. """
# Create Person
person = self.model(
username=username, email=email,
short_name=short_name, full_na... | python | def _create_user(
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institute, password, is_admin, **extra_fields):
"""Creates a new active person. """
# Create Person
person = self.model(
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Karaage-Cluster/karaage | karaage/people/managers.py | PersonManager.create_user | def create_user(
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Karaage-Cluster/karaage | karaage/people/managers.py | PersonManager.create_superuser | def create_superuser(
self, username, email, short_name, full_name,
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""" Creates a new person with super powers. """
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... | python | def create_superuser(
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/templatetags/applications.py | application_state | def application_state(context, application):
""" Render current state of application, verbose. """
new_context = {
'roles': context['roles'],
'org_name': context['org_name'],
'application': application,
}
nodelist = template.loader.get_template(
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""" Render current state of application, verbose. """
new_context = {
'roles': context['roles'],
'org_name': context['org_name'],
'application': application,
}
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/templatetags/applications.py | application_simple_state | def application_simple_state(context, application):
""" Render current state of application, verbose. """
state_machine = get_state_machine(application)
state = state_machine.get_state(application)
return state.name | python | def application_simple_state(context, application):
""" Render current state of application, verbose. """
state_machine = get_state_machine(application)
state = state_machine.get_state(application)
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Karaage-Cluster/karaage | karaage/plugins/kgapplications/templatetags/applications.py | do_application_actions_plus | def do_application_actions_plus(parser, token):
""" Render actions available with extra text. """
nodelist = parser.parse(('end_application_actions',))
parser.delete_first_token()
return ApplicationActionsPlus(nodelist) | python | def do_application_actions_plus(parser, token):
""" Render actions available with extra text. """
nodelist = parser.parse(('end_application_actions',))
parser.delete_first_token()
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daler/trackhub | trackhub/upload.py | run | def run(cmds, **kwargs):
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Wrapper around subprocess.run, with unicode decoding of output.
Additional kwargs are passed to subprocess.run.
"""
proc = sp.Popen(cmds, bufsize=-1, stdout=sp.PIPE, stderr=sp.STDOUT,
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for line in proc.stdout:
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"""
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Additional kwargs are passed to subprocess.run.
"""
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daler/trackhub | trackhub/upload.py | symlink | def symlink(target, linkname):
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Create a symlink to `target` called `linkname`.
Converts `target` and `linkname` to absolute paths; creates
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"""
target = os.path.abspath(target)
linkname = os.path.abspath(linkname)
if not os.path.exists(target):
... | python | def symlink(target, linkname):
"""
Create a symlink to `target` called `linkname`.
Converts `target` and `linkname` to absolute paths; creates
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"""
target = os.path.abspath(target)
linkname = os.path.abspath(linkname)
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daler/trackhub | trackhub/upload.py | upload | def upload(host, user, local_dir, remote_dir, rsync_options=RSYNC_OPTIONS):
"""
Upload a file or directory via rsync.
Parameters
----------
host : str or None
If None, omit the host part and just transfer locally
user : str or None
If None, omit the user part
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"""
Upload a file or directory via rsync.
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----------
host : str or None
If None, omit the host part and just transfer locally
user : str or None
If None, omit the user part
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If None, omit the host part and just transfer locally
user : str or None
If None, omit the user part
local_dir : str
If a directory, a trailing "/" will be added.
remote_dir : str
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daler/trackhub | trackhub/upload.py | local_link | def local_link(local_fn, remote_fn, staging):
"""
Creates a symlink to a local staging area.
The link name is built from `remote_fn`, but the absolute path is put
inside the staging directory.
Example
-------
If we have the following initial setup::
cwd="/home/user"
local... | python | def local_link(local_fn, remote_fn, staging):
"""
Creates a symlink to a local staging area.
The link name is built from `remote_fn`, but the absolute path is put
inside the staging directory.
Example
-------
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cwd="/home/user"
local... | [
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daler/trackhub | trackhub/upload.py | stage | def stage(x, staging):
"""
Stage an object to the `staging` directory.
If the object is a Track and is one of the types that needs an index file
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"""
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# Objects that don'... | python | def stage(x, staging):
"""
Stage an object to the `staging` directory.
If the object is a Track and is one of the types that needs an index file
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daler/trackhub | trackhub/upload.py | stage_hub | def stage_hub(hub, staging=None):
"""
Stage a hub by symlinking all its connected files to a local directory.
"""
linknames = []
if staging is None:
staging = tempfile.mkdtemp()
for obj, level in hub.leaves(base.HubComponent, intermediate=True):
linknames.extend(stage(obj, stagin... | python | def stage_hub(hub, staging=None):
"""
Stage a hub by symlinking all its connected files to a local directory.
"""
linknames = []
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staging = tempfile.mkdtemp()
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daler/trackhub | trackhub/upload.py | upload_hub | def upload_hub(hub, host, remote_dir, user=None, port=22, rsync_options=RSYNC_OPTIONS, staging=None):
"""
Renders, stages, and uploads a hub.
"""
hub.render()
if staging is None:
staging = tempfile.mkdtemp()
staging, linknames = stage_hub(hub, staging=staging)
local_dir = os.path.joi... | python | def upload_hub(hub, host, remote_dir, user=None, port=22, rsync_options=RSYNC_OPTIONS, staging=None):
"""
Renders, stages, and uploads a hub.
"""
hub.render()
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Karaage-Cluster/karaage | karaage/projects/xmlrpc.py | get_project_members | def get_project_members(machine, project_id):
"""
Returns list of usernames given a project id
"""
try:
project = Project.objects.get(pid=project_id)
except Project.DoesNotExist:
return 'Project not found'
return [x.username for x in project.group.members.all()] | python | def get_project_members(machine, project_id):
"""
Returns list of usernames given a project id
"""
try:
project = Project.objects.get(pid=project_id)
except Project.DoesNotExist:
return 'Project not found'
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Karaage-Cluster/karaage | karaage/projects/xmlrpc.py | get_projects | def get_projects(machine):
"""
Returns list of project ids
"""
query = Project.active.all()
return [x.pid for x in query] | python | def get_projects(machine):
"""
Returns list of project ids
"""
query = Project.active.all()
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Karaage-Cluster/karaage | karaage/projects/xmlrpc.py | get_project | def get_project(username, project, machine_name=None):
"""
Used in the submit filter to make sure user is in project
"""
try:
account = Account.objects.get(
username=username,
date_deleted__isnull=True)
except Account.DoesNotExist:
return "Account '%s' not fo... | python | def get_project(username, project, machine_name=None):
"""
Used in the submit filter to make sure user is in project
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try:
account = Account.objects.get(
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date_deleted__isnull=True)
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Karaage-Cluster/karaage | karaage/projects/xmlrpc.py | get_users_projects | def get_users_projects(user):
"""
List projects a user is part of
"""
person = user
projects = person.projects.filter(is_active=True)
return 0, [x.pid for x in projects] | python | def get_users_projects(user):
"""
List projects a user is part of
"""
person = user
projects = person.projects.filter(is_active=True)
return 0, [x.pid for x in projects] | [
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Karaage-Cluster/karaage | karaage/common/simple.py | direct_to_template | def direct_to_template(
request, template, extra_context=None, mimetype=None, **kwargs):
"""
Render a given template with any extra URL parameters in the context as
``{{ params }}``.
"""
if extra_context is None:
extra_context = {}
dictionary = {'params': kwargs}
for key, val... | python | def direct_to_template(
request, template, extra_context=None, mimetype=None, **kwargs):
"""
Render a given template with any extra URL parameters in the context as
``{{ params }}``.
"""
if extra_context is None:
extra_context = {}
dictionary = {'params': kwargs}
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Karaage-Cluster/karaage | karaage/common/simple.py | redirect_to | def redirect_to(request, url, permanent=True, query_string=False, **kwargs):
r"""
Redirect to a given URL.
The given url may contain dict-style string formatting, which will be
interpolated against the params in the URL. For example, to redirect from
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r"""
Redirect to a given URL.
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Karaage-Cluster/karaage | karaage/common/passwords.py | assert_strong_password | def assert_strong_password(username, password, old_password=None):
"""Raises ValueError if the password isn't strong.
Returns the password otherwise."""
# test the length
try:
minlength = settings.MIN_PASSWORD_LENGTH
except AttributeError:
minlength = 12
if len(password) < minl... | python | def assert_strong_password(username, password, old_password=None):
"""Raises ValueError if the password isn't strong.
Returns the password otherwise."""
# test the length
try:
minlength = settings.MIN_PASSWORD_LENGTH
except AttributeError:
minlength = 12
if len(password) < minl... | [
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | _lookup | def _lookup(cls: str) -> LdapObjectClass:
""" Lookup module.class. """
if isinstance(cls, str):
module_name, _, name = cls.rpartition(".")
module = importlib.import_module(module_name)
try:
cls = getattr(module, name)
except AttributeError:
raise Attribute... | python | def _lookup(cls: str) -> LdapObjectClass:
""" Lookup module.class. """
if isinstance(cls, str):
module_name, _, name = cls.rpartition(".")
module = importlib.import_module(module_name)
try:
cls = getattr(module, name)
except AttributeError:
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.save_account | def save_account(self, account: Account) -> None:
""" Account was saved. """
person = account.person
if self._primary_group == 'institute':
lgroup = self._get_group(person.institute.group.name)
elif self._primary_group == 'default_project':
if account.default_proj... | python | def save_account(self, account: Account) -> None:
""" Account was saved. """
person = account.person
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lgroup = self._get_group(person.institute.group.name)
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.delete_account | def delete_account(self, account):
""" Account was deleted. """
try:
luser = self._get_account(account.username)
groups = luser['groups'].load(database=self._database)
for group in groups:
changes = changeset(group, {})
changes = group.... | python | def delete_account(self, account):
""" Account was deleted. """
try:
luser = self._get_account(account.username)
groups = luser['groups'].load(database=self._database)
for group in groups:
changes = changeset(group, {})
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.set_account_password | def set_account_password(self, account, raw_password):
""" Account's password was changed. """
luser = self._get_account(account.username)
changes = changeset(luser, {
'password': raw_password,
})
save(changes, database=self._database) | python | def set_account_password(self, account, raw_password):
""" Account's password was changed. """
luser = self._get_account(account.username)
changes = changeset(luser, {
'password': raw_password,
})
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.set_account_username | def set_account_username(self, account, old_username, new_username):
""" Account's username was changed. """
luser = self._get_account(old_username)
rename(luser, database=self._database, uid=new_username) | python | def set_account_username(self, account, old_username, new_username):
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.add_account_to_group | def add_account_to_group(self, account, group):
""" Add account to group. """
lgroup: OpenldapGroup = self._get_group(group.name)
person: OpenldapAccount = self._get_account(account.username)
changes = changeset(lgroup, {})
changes = lgroup.add_member(changes, person)
sa... | python | def add_account_to_group(self, account, group):
""" Add account to group. """
lgroup: OpenldapGroup = self._get_group(group.name)
person: OpenldapAccount = self._get_account(account.username)
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.get_account_details | def get_account_details(self, account):
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except ObjectDoesNotExist:
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.save_group | def save_group(self, group):
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try:
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Karaage-Cluster/karaage | karaage/datastores/ldap.py | DataStore.delete_group | def delete_group(self, group):
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mozilla/python_moztelemetry | moztelemetry/stats.py | _rank | def _rank(sample):
"""
Assign numeric ranks to all values in the sample.
The ranks begin with 1 for the smallest value. When there are groups of
tied values, assign a rank equal to the midpoint of unadjusted rankings.
E.g.::
>>> rank({3: 1, 5: 4, 9: 1})
{3: 1.0, 5: 3.5, 9: 6.0}
... | python | def _rank(sample):
"""
Assign numeric ranks to all values in the sample.
The ranks begin with 1 for the smallest value. When there are groups of
tied values, assign a rank equal to the midpoint of unadjusted rankings.
E.g.::
>>> rank({3: 1, 5: 4, 9: 1})
{3: 1.0, 5: 3.5, 9: 6.0}
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mozilla/python_moztelemetry | moztelemetry/stats.py | _tie_correct | def _tie_correct(sample):
"""
Returns the tie correction value for U.
See: https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.tiecorrect.html
"""
tc = 0
n = sum(sample.values())
if n < 2:
return 1.0 # Avoid a ``ZeroDivisionError``.
for k in sorted(sample.keys()... | python | def _tie_correct(sample):
"""
Returns the tie correction value for U.
See: https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.tiecorrect.html
"""
tc = 0
n = sum(sample.values())
if n < 2:
return 1.0 # Avoid a ``ZeroDivisionError``.
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mozilla/python_moztelemetry | moztelemetry/stats.py | ndtr | def ndtr(a):
"""
Returns the area under the Gaussian probability density function,
integrated from minus infinity to x.
See: https://docs.scipy.org/doc/scipy/reference/generated/scipy.special.ndtr.html#scipy.special.ndtr
"""
sqrth = math.sqrt(2) / 2
x = float(a) * sqrth
z = abs(x)
... | python | def ndtr(a):
"""
Returns the area under the Gaussian probability density function,
integrated from minus infinity to x.
See: https://docs.scipy.org/doc/scipy/reference/generated/scipy.special.ndtr.html#scipy.special.ndtr
"""
sqrth = math.sqrt(2) / 2
x = float(a) * sqrth
z = abs(x)
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mozilla/python_moztelemetry | moztelemetry/stats.py | mann_whitney_u | def mann_whitney_u(sample1, sample2, use_continuity=True):
"""
Computes the Mann-Whitney rank test on both samples.
Each sample is expected to be of the form::
{1: 5, 2: 20, 3: 12, ...}
Returns a named tuple with:
``u`` equal to min(U for sample1, U for sample2), and
``p`` equ... | python | def mann_whitney_u(sample1, sample2, use_continuity=True):
"""
Computes the Mann-Whitney rank test on both samples.
Each sample is expected to be of the form::
{1: 5, 2: 20, 3: 12, ...}
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mozilla/python_moztelemetry | moztelemetry/spark.py | deprecated | def deprecated(func):
"""This is a decorator which can be used to mark functions
as deprecated. It will result in a warning being emitted
when the function is used."""
def newFunc(*args, **kwargs):
print("Call to deprecated function %s." % func.__name__)
return func(*args, **kwargs)
... | python | def deprecated(func):
"""This is a decorator which can be used to mark functions
as deprecated. It will result in a warning being emitted
when the function is used."""
def newFunc(*args, **kwargs):
print("Call to deprecated function %s." % func.__name__)
return func(*args, **kwargs)
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mozilla/python_moztelemetry | moztelemetry/spark.py | get_pings | def get_pings(sc, app=None, build_id=None, channel=None, doc_type='saved_session',
fraction=1.0, schema=None, source_name='telemetry', source_version='4',
submission_date=None, version=None):
""" Returns a RDD of Telemetry submissions for a given filtering criteria.
:param sc: an in... | python | def get_pings(sc, app=None, build_id=None, channel=None, doc_type='saved_session',
fraction=1.0, schema=None, source_name='telemetry', source_version='4',
submission_date=None, version=None):
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mozilla/python_moztelemetry | moztelemetry/spark.py | get_pings_properties | def get_pings_properties(pings, paths, only_median=False, with_processes=False,
histograms_url=None, additional_histograms=None):
"""
Returns a RDD of a subset of properties of pings. Child histograms are
automatically merged with the parent histogram.
If one of the paths point... | python | def get_pings_properties(pings, paths, only_median=False, with_processes=False,
histograms_url=None, additional_histograms=None):
"""
Returns a RDD of a subset of properties of pings. Child histograms are
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mozilla/python_moztelemetry | moztelemetry/spark.py | get_one_ping_per_client | def get_one_ping_per_client(pings):
"""
Returns a single ping for each client in the RDD.
THIS METHOD IS NOT RECOMMENDED: The ping to be returned is essentially
selected at random. It is also expensive as it requires data to be
shuffled around. It should be run only after extracting a subset with
... | python | def get_one_ping_per_client(pings):
"""
Returns a single ping for each client in the RDD.
THIS METHOD IS NOT RECOMMENDED: The ping to be returned is essentially
selected at random. It is also expensive as it requires data to be
shuffled around. It should be run only after extracting a subset with
... | [
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Karaage-Cluster/karaage | karaage/common/decorators.py | admin_required | def admin_required(function=None):
"""
Decorator for views that checks that the user is an administrator,
redirecting to the log-in page if necessary.
"""
def check_perms(user):
# if user not logged in, show login form
if not user.is_authenticated:
return False
# ... | python | def admin_required(function=None):
"""
Decorator for views that checks that the user is an administrator,
redirecting to the log-in page if necessary.
"""
def check_perms(user):
# if user not logged in, show login form
if not user.is_authenticated:
return False
# ... | [
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Karaage-Cluster/karaage | karaage/common/decorators.py | login_required | def login_required(function=None):
"""
Decorator for views that checks that the user is logged in, redirecting
to the log-in page if necessary.
"""
def check_perms(user):
# if user not logged in, show login form
if not user.is_authenticated:
return False
# if this... | python | def login_required(function=None):
"""
Decorator for views that checks that the user is logged in, redirecting
to the log-in page if necessary.
"""
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# if user not logged in, show login form
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Karaage-Cluster/karaage | karaage/common/decorators.py | xmlrpc_machine_required | def xmlrpc_machine_required(function=None):
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"""
def actual_decorator(func):
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"""
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore._call | def _call(self, command, ignore_errors=None):
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ignore_errors = []
cmd = []
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cmd.extend([self._path, "-iP"])
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""" Call remote command with logging. """
if ignore_errors is None:
ignore_errors = []
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore._read_output | def _read_output(self, command):
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cmd.extend(self._prefix)
cmd.extend([self._path, "-iP"])
cmd.extend(command)
command = cmd
logger.debug("Cmd %s" % command)
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cmd = []
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore.get_project | def get_project(self, projectname):
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results = self._read_output(cmd)
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore.get_users_in_project | def get_users_in_project(self, projectname):
""" Get list of users in project from Slurm. """
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results = self._read_output(cmd)
user_list = []
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... | python | def get_users_in_project(self, projectname):
""" Get list of users in project from Slurm. """
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results = self._read_output(cmd)
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore.get_projects_in_user | def get_projects_in_user(self, username):
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results = self._read_output(cmd)
project_list = []
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project_list.append(result["Account"])
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results = self._read_output(cmd)
project_list = []
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore._save_account | def _save_account(self, account, username):
""" Called when account is created/updated. With username override. """
# retrieve default project, or use null project if none
default_project_name = self._null_project
if account.default_project is not None:
default_project_name ... | python | def _save_account(self, account, username):
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore._delete_account | def _delete_account(self, username):
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# account deleted
ds_user = self.get_user(username)
if ds_user is not None:
self._call(["delete", "user", "name=%s" % username])
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# account deleted
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore.save_project | def save_project(self, project):
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pid = project.pid
# project created
# project updated
if project.is_active:
# project is not deleted
logger.debug("project is active")
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# project created
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Karaage-Cluster/karaage | karaage/datastores/slurm.py | SlurmDataStore.delete_project | def delete_project(self, project):
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pid = project.pid
# project deleted
ds_project = self.get_project(pid)
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self._call(["delete", "account", "name=%s" % pid])
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Karaage-Cluster/karaage | karaage/projects/lookups.py | ProjectLookup.get_query | def get_query(self, q, request):
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either implement this method yourself or set the search_field
in the LookupChannel class definition
"""
return Project.objects.filter(
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daler/trackhub | trackhub/trackdb.py | TrackDb.add_tracks | def add_tracks(self, track):
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Add a track or iterable of tracks.
Parameters
----------
track : iterable or Track
Iterable of :class:`Track` objects, or a single :class:`Track`
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"""
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Add a track or iterable of tracks.
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Karaage-Cluster/karaage | karaage/management/commands/unlock_training_accounts.py | nicepass | def nicepass(alpha=8, numeric=4):
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"""
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"""
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"""
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Karaage-Cluster/karaage | karaage/people/lookups.py | PersonLookup.get_query | def get_query(self, q, request):
""" return a query set searching for the query string q
either implement this method yourself or set the search_field
in the LookupChannel class definition
"""
return Person.objects.filter(
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either implement this method yourself or set the search_field
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Karaage-Cluster/karaage | karaage/people/lookups.py | GroupLookup.format_match | def format_match(self, obj):
"""
(HTML) formatted item for display in the dropdown
"""
result = [escape(obj.name)]
if obj.description:
result.append(escape(obj.description))
return " ".join(result) | python | def format_match(self, obj):
"""
(HTML) formatted item for display in the dropdown
"""
result = [escape(obj.name)]
if obj.description:
result.append(escape(obj.description))
return " ".join(result) | [
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Karaage-Cluster/karaage | karaage/common/trace.py | loggable | def loggable(obj):
"""Return "True" if the obj implements the minimum Logger API
required by the 'trace' decorator.
"""
if isinstance(obj, logging.Logger):
return True
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... | python | def loggable(obj):
"""Return "True" if the obj implements the minimum Logger API
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"""
if isinstance(obj, logging.Logger):
return True
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return (inspect.isclass(obj)
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Karaage-Cluster/karaage | karaage/common/trace.py | _formatter_self | def _formatter_self(name, value):
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"""
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return '%s = <%s obj... | python | def _formatter_self(name, value):
"""Format the "self" variable and value on instance methods.
"""
__mname = value.__module__
if __mname != '__main__':
return '%s = <%s.%s object at 0x%x>' \
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Karaage-Cluster/karaage | karaage/common/trace.py | _formatter_class | def _formatter_class(name, value):
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return "%s = <type '%s'>" % (name, value.__name__) | python | def _formatter_class(name, value):
"""Format the "klass" variable and value on class methods.
"""
__mname = value.__module__
if __mname != '__main__':
return "%s = <type '%s.%s'>" % (name, __mname, value.__name__)
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