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--- |
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license: cc-by-sa-4.0 |
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tags: |
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- biology |
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- rna |
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- genomics |
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--- |
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# Overview |
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Protein localization is an annotation of the subcellular compartments that proteins are found in. This task is a multilabel classification -- proteins can be found in more than one compartment. |
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This dataset is redistributed as part of mRNABench: https://github.com/morrislab/mRNABench |
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# Data Format |
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Description of data columns: |
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- `target`: Multihot labelling of cellular components that a protein appear in. |
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The label positions correspond to: `[Cytosol, Nucleoli, Microtubules, Vesicles, Centrosome, Mitochondria, Golgi apparatus, Nucleoplasm, Nuclear bodies, Endoplasmic reticulum, Nuclear speckles, Plasma membrane]` |
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- `cds`: Binary track which reports position of first nucleotide in each codon in CDS. |
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- `splice`: Binary track which reports position of the 3' end of each exon, indicating splice sites. |
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# Data Source |
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This dataset is a Hugging Face redistribution of the subcellar localization data from [Protein Atlas](https://proteinatlas.org) (Thul, P. J. et al. 2017), which is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. |
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Original paper: https://www.science.org/doi/10.1126/science.aal3321 |
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Original dataset source: https://www.proteinatlas.org/ |
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Citation: Thul, P. J. et al. A subcellular map of the human proteome. Science 356 (2017) |
