| { |
| "model_id": "EleutherAI/enformer-official-rough", |
| "enformer_pytorch_version": "0.8.0", |
| "pytorch_version": "1.13.1+cu116", |
| "python_version": "3.10", |
| "cuda_version": "11.6", |
| "git_commit": "N/A - not a git repository", |
| "genome_build": "hg38", |
| "fasta_path_or_identifier": "/home/lkim2/enformer_GTEX/GTEX_data/data/38.fa", |
| "tissue": "Whole_Blood", |
| "input_length": 196608, |
| "human_output_shape": "896 x 5313", |
| "cage_track_ids": [ |
| 4950 |
| ], |
| "tss_bin_aggregation": "mean of bins 447,448,449", |
| "input_to_output_coordinate_mapping": "standard enformer central crop", |
| "gene_strand_handling": "none - TSS bin used regardless of strand", |
| "genotype_handling": "standardized genotype matrix provided, not re-standardized", |
| "ref_alt_orientation": "enformer_effect = log1p(ALT) - log1p(REF)", |
| "batch_size": 8, |
| "gpu": "cuda", |
| "numerical_precision": "float32", |
| "number_of_genes": 100, |
| "number_of_donors": 574, |
| "number_of_variants": 7179, |
| "number_of_snp_gene_pairs": 7334, |
| "number_of_excluded_variants": 0, |
| "random_seed": "none" |
| } |
